AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000437.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000437.01.T01 MTR_1g015970 88.385 551 26 1 1 551 39 551 0.0 1008
MsG0180000437.01.T01 MTR_1g015980 74.684 553 98 5 1 548 39 554 0.0 829
MsG0180000437.01.T01 MTR_1g015910 70.290 552 124 3 1 551 22 534 0.0 804
MsG0180000437.01.T01 MTR_1g015910 70.290 552 124 3 1 551 65 577 0.0 803
MsG0180000437.01.T01 MTR_1g015940 76.987 478 49 2 11 488 54 470 0.0 746
MsG0180000437.01.T01 MTR_2g099950 49.362 549 233 5 1 545 1 508 0.0 540
MsG0180000437.01.T01 MTR_2g099950 49.362 549 233 5 1 545 64 571 0.0 539
MsG0180000437.01.T01 MTR_5g066380 47.748 555 240 8 1 543 55 571 0.0 533
MsG0180000437.01.T01 MTR_8g017410 49.180 549 234 5 1 545 67 574 0.0 530
MsG0180000437.01.T01 MTR_8g017410 49.180 549 234 5 1 545 21 528 0.0 529
MsG0180000437.01.T01 MTR_7g105050 46.069 547 253 4 1 545 67 573 3.13e-175 507
MsG0180000437.01.T01 MTR_1g059700 45.971 546 252 5 1 543 60 565 1.98e-174 505
MsG0180000437.01.T01 MTR_8g017410 54.286 350 154 3 1 346 67 414 8.46e-134 396
MsG0180000437.01.T01 MTR_4g101630 40.182 550 274 9 1 543 19 520 6.18e-130 390
MsG0180000437.01.T01 MTR_4g101630 40.182 550 274 9 1 543 131 632 3.36e-128 389
MsG0180000437.01.T01 MTR_3g008530 39.706 544 282 7 1 543 123 621 3.13e-127 386
MsG0180000437.01.T01 MTR_1g015920 57.831 83 32 2 213 295 34 113 1.58e-24 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000437.01.T01 AT3G13790 50.903 554 222 7 1 545 1 513 0.0 551
MsG0180000437.01.T01 AT3G13790 50.903 554 222 7 1 545 1 513 0.0 551
MsG0180000437.01.T01 AT3G13790 50.903 554 222 7 1 545 1 513 0.0 551
MsG0180000437.01.T01 AT3G13790 50.903 554 222 7 1 545 68 580 0.0 550
MsG0180000437.01.T01 AT3G13790 50.903 554 222 7 1 545 71 583 0.0 550
MsG0180000437.01.T01 AT1G55120 48.468 555 237 6 1 545 19 534 0.0 540
MsG0180000437.01.T01 AT1G55120 48.468 555 237 6 1 545 18 533 0.0 540
MsG0180000437.01.T01 AT1G55120 48.468 555 237 6 1 545 58 573 0.0 540
MsG0180000437.01.T01 AT1G55120 48.468 555 237 6 1 545 43 558 0.0 539
MsG0180000437.01.T01 AT5G11920 48.732 552 237 7 1 547 36 546 0.0 527
MsG0180000437.01.T01 AT5G11920 48.732 552 237 7 1 547 1 511 0.0 527
MsG0180000437.01.T01 AT3G13784 47.368 551 241 7 1 543 9 518 3.11e-178 513
MsG0180000437.01.T01 AT3G13784 47.368 551 241 7 1 543 59 568 1.42e-177 513
MsG0180000437.01.T01 AT3G13784 47.368 551 241 7 1 543 62 571 2.43e-177 513
MsG0180000437.01.T01 AT3G13784 47.368 551 241 7 1 543 62 571 2.62e-177 512
MsG0180000437.01.T01 AT3G52600 44.973 547 264 7 1 542 1 515 4.36e-161 469
MsG0180000437.01.T01 AT3G52600 44.973 547 264 7 1 542 13 527 9.18e-161 469
MsG0180000437.01.T01 AT2G36190 44.872 546 265 6 1 542 69 582 1.53e-160 470
MsG0180000437.01.T01 AT3G52600 44.973 547 264 7 1 542 67 581 4.72e-160 469
MsG0180000437.01.T01 AT5G11920 54.570 372 162 5 1 367 36 405 3.76e-142 417
MsG0180000437.01.T01 AT1G12240 37.770 556 286 11 1 543 140 648 3.79e-119 366
MsG0180000437.01.T01 AT1G62660 37.750 551 292 11 1 543 27 534 2.35e-114 350
MsG0180000437.01.T01 AT1G62660 37.523 549 296 10 1 543 125 632 3.37e-113 350
MsG0180000437.01.T01 AT1G62660 36.400 500 269 10 52 543 8 466 3.30e-95 299
MsG0180000437.01.T01 AT1G62660 36.400 500 269 10 52 543 8 466 3.30e-95 299

Find 109 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTCATGACTATTACTTTAT+TGG 0.083132 1:+6004461 MsG0180000437.01.T01:CDS
ATTCCTGATGTAAAATTTAC+AGG 0.237883 1:+6004512 MsG0180000437.01.T01:CDS
TATCAAATGATCTCATAAAT+TGG 0.252410 1:+6003919 MsG0180000437.01.T01:CDS
TAAGGATCAGATAGATTCTT+TGG 0.280907 1:-6004092 None:intergenic
AACATTTGGTCATGAGAAAA+TGG 0.293056 1:+6003881 MsG0180000437.01.T01:CDS
AAAAGGATGGGCTGGTCTTC+AGG 0.293113 1:+6004664 MsG0180000437.01.T01:CDS
GGTTATATTGGTAGAATAAA+TGG 0.306959 1:-6003848 None:intergenic
AGACAATTCCAAGGAAGTTT+TGG 0.313956 1:+6004810 MsG0180000437.01.T01:intron
CTAAGAACAGGAGAATATTA+TGG 0.318622 1:+6004600 MsG0180000437.01.T01:CDS
GAGTTGAAGTCGGTGAATTC+CGG 0.322187 1:+6004168 MsG0180000437.01.T01:CDS
TGACCAAATGTTGCTGCATC+AGG 0.325786 1:-6003870 None:intergenic
GGATCAACTGTTGAAGTAAA+AGG 0.330439 1:+6004932 MsG0180000437.01.T01:CDS
ATCTCCAAAACTCTCTATAA+TGG 0.332421 1:-6005860 None:intergenic
CACTTTACAGGTCTTCATTA+CGG 0.345350 1:+6005657 MsG0180000437.01.T01:intron
GGCAAGGAAATGATGGAAAA+TGG 0.346822 1:+6004207 MsG0180000437.01.T01:CDS
TTGCTGCATCAGGGTTATAT+TGG 0.350746 1:-6003860 None:intergenic
AGGTCCATTATAGAGAGTTT+TGG 0.351375 1:+6005856 MsG0180000437.01.T01:CDS
AGTGAAAATGACATTCAAAA+AGG 0.353647 1:+6004647 MsG0180000437.01.T01:CDS
AGAGGACAACAATATCTTTC+CGG 0.357585 1:+6005223 MsG0180000437.01.T01:CDS
GCATCAAGAAAAGGCATGAT+AGG 0.363674 1:+6005159 MsG0180000437.01.T01:CDS
AAGGAATTGAGATTTGACTA+TGG 0.364788 1:+6004542 MsG0180000437.01.T01:CDS
ACTTTACAGGTCTTCATTAC+GGG 0.371486 1:+6005658 MsG0180000437.01.T01:intron
ATCTATCTGATCCTTACTTA+AGG 0.376390 1:+6004099 MsG0180000437.01.T01:CDS
GTCAAAGATAGTTGCATATG+AGG 0.378605 1:-6005696 None:intergenic
GTAATCATTGGTGCGCAAAA+TGG 0.381654 1:+6004233 MsG0180000437.01.T01:CDS
AGCATGAAGCAAGCAGAGTT+TGG 0.386544 1:+6006003 MsG0180000437.01.T01:CDS
TTATCAAGCCAAAACTTCCT+TGG 0.387614 1:-6004818 None:intergenic
AACTCAGCACTTTGTAGATC+AGG 0.394334 1:-6005087 None:intergenic
AACCCTGATGCAGCAACATT+TGG 0.398188 1:+6003867 MsG0180000437.01.T01:CDS
AGTTGAAGTCGGTGAATTCC+GGG 0.403765 1:+6004169 MsG0180000437.01.T01:CDS
AACTATTTCACTTAGAAGCT+TGG 0.408959 1:+6005736 MsG0180000437.01.T01:CDS
AAATGGAGTTGATACAACTA+TGG 0.410792 1:+6004391 MsG0180000437.01.T01:CDS
GTCGATGTTACAGTTCTAGA+TGG 0.420868 1:+6005403 MsG0180000437.01.T01:CDS
ACAGGACCAATGTACTATAA+AGG 0.424990 1:+6003819 None:intergenic
TTTCCTTGCCATGCAGTTGA+AGG 0.426112 1:-6004194 None:intergenic
TTTATGTCACCAGGTATACT+TGG 0.431266 1:-6003966 None:intergenic
CTTCAACAGTTGATCCACTT+TGG 0.431811 1:-6004925 None:intergenic
TAAGAACAGGAGAATATTAT+GGG 0.436477 1:+6004601 MsG0180000437.01.T01:CDS
AAAGGCATGATAGGGCCATT+TGG 0.439504 1:+6005168 MsG0180000437.01.T01:CDS
TGGAAAATATGTATCTGATC+AGG 0.445267 1:+6004481 MsG0180000437.01.T01:CDS
GACATAAACAGTTGTTGGTC+AGG 0.447820 1:+6003981 MsG0180000437.01.T01:CDS
TTCTTTGCAACAGATGGTAC+TGG 0.449332 1:+6004323 MsG0180000437.01.T01:CDS
TCTATCTGATCCTTACTTAA+GGG 0.453904 1:+6004100 MsG0180000437.01.T01:CDS
GTGTATATCAATAACACAAA+TGG 0.454605 1:+6004374 MsG0180000437.01.T01:CDS
AAAAGGTATCACTGCATCTC+AGG 0.460368 1:+6004949 MsG0180000437.01.T01:CDS
AAACCTGCTATGTTGTATAC+AGG 0.465299 1:+6004029 MsG0180000437.01.T01:CDS
TGATCCTTACTTAAGGGAAT+GGG 0.475429 1:+6004106 MsG0180000437.01.T01:CDS
TCTGTTGCAAAGAAAGGTAT+AGG 0.475934 1:-6004314 None:intergenic
CATCGTCGACTCTATATATC+CGG 0.476036 1:-6005242 None:intergenic
CTGATCCTTACTTAAGGGAA+TGG 0.477383 1:+6004105 MsG0180000437.01.T01:CDS
GATAACAGAAAAGCATAGAA+AGG 0.482074 1:+6005435 MsG0180000437.01.T01:CDS
ATGTAAAATTTACAGGAACT+TGG 0.482891 1:+6004519 MsG0180000437.01.T01:CDS
GGCAATCAAATCAATATCAC+TGG 0.492113 1:+6004893 MsG0180000437.01.T01:CDS
GTACCATCTGTTGCAAAGAA+AGG 0.493447 1:-6004320 None:intergenic
GGTGCGCAAAATGGCGATGA+AGG 0.496572 1:+6004242 MsG0180000437.01.T01:CDS
ACTGCATGGCAAGGAAATGA+TGG 0.498338 1:+6004200 MsG0180000437.01.T01:CDS
GAACAATATGCATCAAGAAA+AGG 0.506692 1:+6005150 MsG0180000437.01.T01:CDS
ATACCTTTCTTTGCAACAGA+TGG 0.509617 1:+6004317 MsG0180000437.01.T01:CDS
CTGGTGACATAAACAGTTGT+TGG 0.512139 1:+6003976 MsG0180000437.01.T01:CDS
ATATTGTTGTCCTCTCTGCC+TGG 0.512873 1:-6005215 None:intergenic
GCTAAAGCTTGCAAACCAAA+TGG 0.522260 1:-6005183 None:intergenic
TTATCTCAGAACTGAATGCT+TGG 0.526377 1:+6005980 MsG0180000437.01.T01:CDS
TCTTGAGGATCAACTTCACT+TGG 0.527016 1:-6005117 None:intergenic
GCCATGCAGTTGAAGGATCC+CGG 0.529392 1:-6004187 None:intergenic
ACAGGAGAATATTATGGGCA+TGG 0.535196 1:+6004606 MsG0180000437.01.T01:CDS
TGGTCATGAGAAAATGGTAT+GGG 0.536881 1:+6003887 MsG0180000437.01.T01:CDS
GGTGGTATATGCAGATTGAC+AGG 0.537844 1:+6005836 MsG0180000437.01.T01:intron
CAGTTCTAGATGGAAGTACA+TGG 0.542076 1:+6005413 MsG0180000437.01.T01:CDS
TGTTCTTTACAGAGTTCTTG+AGG 0.543126 1:-6005132 None:intergenic
TTGGTCATGAGAAAATGGTA+TGG 0.544520 1:+6003886 MsG0180000437.01.T01:CDS
ATAACAGAAAAGCATAGAAA+GGG 0.544752 1:+6005436 MsG0180000437.01.T01:CDS
ATTCCTGTATACAACATAGC+AGG 0.545924 1:-6004032 None:intergenic
ATTGAGATTTGACTATGGAA+AGG 0.547063 1:+6004547 MsG0180000437.01.T01:CDS
CAACAACTGTTTATGTCACC+AGG 0.549416 1:-6003975 None:intergenic
CATCTTTATGTATTCAACAA+TGG 0.558641 1:+6005943 MsG0180000437.01.T01:CDS
CATCAAGAAAAGGCATGATA+GGG 0.558806 1:+6005160 MsG0180000437.01.T01:CDS
ATATTCTCCTGTTCTTAGCA+TGG 0.560528 1:-6004595 None:intergenic
CAGGAGAATATTATGGGCAT+GGG 0.561703 1:+6004607 MsG0180000437.01.T01:CDS
CCACTAGGTGGAGTCATCAA+AGG 0.562008 1:-6004146 None:intergenic
ATCAGATAGATTCTTTGGCA+TGG 0.562603 1:-6004087 None:intergenic
GGCTCAGCCACTATACTCCC+AGG 0.563694 1:+6004002 MsG0180000437.01.T01:CDS
TCCGGGATCCTTCAACTGCA+TGG 0.567033 1:+6004186 MsG0180000437.01.T01:CDS
TTTGTGTTATTGATATACAC+AGG 0.571855 1:-6004371 None:intergenic
GAGAATATTATGGGCATGGG+CGG 0.571936 1:+6004610 MsG0180000437.01.T01:CDS
TGATGATAAGTGACCAGACC+AGG 0.572252 1:+6005277 MsG0180000437.01.T01:CDS
AATTATTCTTTACAAAAGTG+AGG 0.574500 1:+6004268 MsG0180000437.01.T01:CDS
TAAACTCCTTTATAGTACAT+TGG 0.575331 1:-6003825 None:intergenic
AAAATTTACAGGAACTTGGA+AGG 0.576790 1:+6004523 MsG0180000437.01.T01:CDS
TGATATTGATTTGATTGCCA+CGG 0.594415 1:-6004889 None:intergenic
ATGGGAAGCAATTAATGCAA+TGG 0.594697 1:+6004843 MsG0180000437.01.T01:CDS
GACCAAATGTTGCTGCATCA+GGG 0.599733 1:-6003869 None:intergenic
TCACAATGTAGACAATTCCA+AGG 0.599864 1:+6004801 MsG0180000437.01.T01:intron
TCACCGACTTCAACTCCACT+AGG 0.605450 1:-6004161 None:intergenic
AGCTTTAGCATCAAAAGACC+AGG 0.607871 1:+6005197 MsG0180000437.01.T01:CDS
GATCCTTCAACTGCATGGCA+AGG 0.615553 1:+6004191 MsG0180000437.01.T01:CDS
AAGGAAATGATGGAAAATGG+AGG 0.623713 1:+6004210 MsG0180000437.01.T01:CDS
GGAAAATGGAGGGTAATCAT+TGG 0.627171 1:+6004221 MsG0180000437.01.T01:CDS
CCACCTAGTGGAGTTGAAGT+CGG 0.629703 1:+6004158 MsG0180000437.01.T01:CDS
ACTGGAGAAACACTCCAAAG+TGG 0.631213 1:+6004911 MsG0180000437.01.T01:CDS
GCTATTGAACCAAGTATACC+TGG 0.633518 1:+6003957 MsG0180000437.01.T01:CDS
TTACAGGTCTTCATTACGGG+AGG 0.640875 1:+6005661 MsG0180000437.01.T01:intron
CCTTTGATGACTCCACCTAG+TGG 0.641854 1:+6004146 MsG0180000437.01.T01:CDS
CAACAATGGAAGTCAGAATG+TGG 0.643239 1:+6005957 MsG0180000437.01.T01:CDS
AGGAAATGATGGAAAATGGA+GGG 0.651406 1:+6004211 MsG0180000437.01.T01:CDS
CGGATATATAGAGTCGACGA+TGG 0.658526 1:+6005243 MsG0180000437.01.T01:CDS
CATCAAAAGACCAGGCAGAG+AGG 0.668940 1:+6005205 MsG0180000437.01.T01:CDS
GGTCATGAGAAAATGGTATG+GGG 0.676642 1:+6003888 MsG0180000437.01.T01:CDS
CCGACTTCAACTCCACTAGG+TGG 0.683686 1:-6004158 None:intergenic
GAACTGTAACATCGACAATG+TGG 0.693946 1:-6005396 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATATATAATTGTGTAA+CGG - Chr1:6004732-6004751 None:intergenic 10.0%
!!! TTTTTTAATTTAACTTTTCA+AGG + Chr1:6005038-6005057 MsG0180000437.01.T01:intron 10.0%
!! AATAGTGTAAAAAAATAACC+TGG - Chr1:6005298-6005317 None:intergenic 20.0%
!! AATTATTCTTTACAAAAGTG+AGG + Chr1:6004268-6004287 MsG0180000437.01.T01:CDS 20.0%
!! ACAAATAAACAACACTTATA+AGG - Chr1:6005775-6005794 None:intergenic 20.0%
!! TATCAAATGATCTCATAAAT+TGG + Chr1:6003919-6003938 MsG0180000437.01.T01:CDS 20.0%
!! TTATAACTATTATCTAGATC+AGG - Chr1:6004756-6004775 None:intergenic 20.0%
!!! AGAATGTTGATTTTATCAAA+GGG + Chr1:6005488-6005507 MsG0180000437.01.T01:CDS 20.0%
!!! TTTTATTTTAGTTTCGTGAT+AGG + Chr1:6004689-6004708 MsG0180000437.01.T01:intron 20.0%
! AAAATGACATTCAAAAAGGA+TGG + Chr1:6004651-6004670 MsG0180000437.01.T01:CDS 25.0%
! AAATGACATTCAAAAAGGAT+GGG + Chr1:6004652-6004671 MsG0180000437.01.T01:CDS 25.0%
! AGTGAAAATGACATTCAAAA+AGG + Chr1:6004647-6004666 MsG0180000437.01.T01:CDS 25.0%
! ATATACACAGGAAAAAAATC+TGG - Chr1:6004362-6004381 None:intergenic 25.0%
! ATGTAAAATTTACAGGAACT+TGG + Chr1:6004519-6004538 MsG0180000437.01.T01:CDS 25.0%
! ATTCCTGATGTAAAATTTAC+AGG + Chr1:6004512-6004531 MsG0180000437.01.T01:CDS 25.0%
! CAATGAGACTTATATAATCA+AGG + Chr1:6005519-6005538 MsG0180000437.01.T01:intron 25.0%
! CATCTTTATGTATTCAACAA+TGG + Chr1:6005943-6005962 MsG0180000437.01.T01:CDS 25.0%
! GGTTATATTGGTAGAATAAA+TGG - Chr1:6003851-6003870 None:intergenic 25.0%
! GTGTATATCAATAACACAAA+TGG + Chr1:6004374-6004393 MsG0180000437.01.T01:CDS 25.0%
! TAAGAACAGGAGAATATTAT+GGG + Chr1:6004601-6004620 MsG0180000437.01.T01:CDS 25.0%
!! AGTTTTTCTAACTCTTCAAT+TGG - Chr1:6004869-6004888 None:intergenic 25.0%
!! ATAACAGAAAAGCATAGAAA+GGG + Chr1:6005436-6005455 MsG0180000437.01.T01:CDS 25.0%
!! TCTTTTTCTGTAGCAAATAA+AGG - Chr1:6005919-6005938 None:intergenic 25.0%
!! TTTGTGTTATTGATATACAC+AGG - Chr1:6004374-6004393 None:intergenic 25.0%
!!! AAGTGAAATAGTTTTGAGAT+TGG - Chr1:6005729-6005748 None:intergenic 25.0%
!!! AGTGAAATAGTTTTGAGATT+GGG - Chr1:6005728-6005747 None:intergenic 25.0%
!!! CACTATTCAAACTTATTTTG+CGG + Chr1:6005311-6005330 MsG0180000437.01.T01:intron 25.0%
!!! GAGAATGTTGATTTTATCAA+AGG + Chr1:6005487-6005506 MsG0180000437.01.T01:CDS 25.0%
AAAATTTACAGGAACTTGGA+AGG + Chr1:6004523-6004542 MsG0180000437.01.T01:CDS 30.0%
AACATTTGGTCATGAGAAAA+TGG + Chr1:6003881-6003900 MsG0180000437.01.T01:CDS 30.0%
AACTATTTCACTTAGAAGCT+TGG + Chr1:6005736-6005755 MsG0180000437.01.T01:CDS 30.0%
AAGGAATTGAGATTTGACTA+TGG + Chr1:6004542-6004561 MsG0180000437.01.T01:CDS 30.0%
ATCGTTCGATGTTTATCTAA+TGG - Chr1:6005594-6005613 None:intergenic 30.0%
ATCTATCTGATCCTTACTTA+AGG + Chr1:6004099-6004118 MsG0180000437.01.T01:CDS 30.0%
ATCTCCAAAACTCTCTATAA+TGG - Chr1:6005863-6005882 None:intergenic 30.0%
ATTGAGATTTGACTATGGAA+AGG + Chr1:6004547-6004566 MsG0180000437.01.T01:CDS 30.0%
CGTCATGACTATTACTTTAT+TGG + Chr1:6004461-6004480 MsG0180000437.01.T01:CDS 30.0%
CTAAGAACAGGAGAATATTA+TGG + Chr1:6004600-6004619 MsG0180000437.01.T01:CDS 30.0%
GAACAATATGCATCAAGAAA+AGG + Chr1:6005150-6005169 MsG0180000437.01.T01:CDS 30.0%
TAAGGATCAGATAGATTCTT+TGG - Chr1:6004095-6004114 None:intergenic 30.0%
TACATCTATATAGTCGATCT+CGG + Chr1:6005568-6005587 MsG0180000437.01.T01:intron 30.0%
TCTATCTGATCCTTACTTAA+GGG + Chr1:6004100-6004119 MsG0180000437.01.T01:CDS 30.0%
TGGAAAATATGTATCTGATC+AGG + Chr1:6004481-6004500 MsG0180000437.01.T01:CDS 30.0%
TGTAAAAAAATAACCTGGTC+TGG - Chr1:6005293-6005312 None:intergenic 30.0%
! AAAGTGAGGATTTTGTTAAG+TGG + Chr1:6004282-6004301 MsG0180000437.01.T01:CDS 30.0%
! GATAACAGAAAAGCATAGAA+AGG + Chr1:6005435-6005454 MsG0180000437.01.T01:CDS 30.0%
! GGATTTTGTTAAGTGGATAT+TGG + Chr1:6004289-6004308 MsG0180000437.01.T01:CDS 30.0%
! GTTCCTGTAAATTTTACATC+AGG - Chr1:6004518-6004537 None:intergenic 30.0%
! TTAAGTTTTGCACACTTTAC+AGG + Chr1:6005645-6005664 MsG0180000437.01.T01:intron 30.0%
!! AAATGGAGTTGATACAACTA+TGG + Chr1:6004391-6004410 MsG0180000437.01.T01:CDS 30.0%
!! TGATATTGATTTGATTGCCA+CGG - Chr1:6004892-6004911 None:intergenic 30.0%
!!! AAGTTTTGGCTTGATAAGAA+TGG + Chr1:6004824-6004843 MsG0180000437.01.T01:CDS 30.0%
!!! AATGTCATTTTCACTAGAGT+CGG - Chr1:6004642-6004661 None:intergenic 30.0%
!!! AGTTTTGGCTTGATAAGAAT+GGG + Chr1:6004825-6004844 MsG0180000437.01.T01:CDS 30.0%
!!! ATTATAGAGAGTTTTGGAGA+TGG + Chr1:6005862-6005881 MsG0180000437.01.T01:CDS 30.0%
AAACCTGCTATGTTGTATAC+AGG + Chr1:6004029-6004048 MsG0180000437.01.T01:CDS 35.0%
ACTTTACAGGTCTTCATTAC+GGG + Chr1:6005658-6005677 MsG0180000437.01.T01:intron 35.0%
AGACATTGAATCTCTCATTG+AGG + Chr1:6005355-6005374 MsG0180000437.01.T01:intron 35.0%
AGAGGACAACAATATCTTTC+CGG + Chr1:6005223-6005242 MsG0180000437.01.T01:CDS 35.0%
ATACCTTTCTTTGCAACAGA+TGG + Chr1:6004317-6004336 MsG0180000437.01.T01:CDS 35.0%
ATATTCTCCTGTTCTTAGCA+TGG - Chr1:6004598-6004617 None:intergenic 35.0%
ATCAGATAGATTCTTTGGCA+TGG - Chr1:6004090-6004109 None:intergenic 35.0%
ATGGGAAGCAATTAATGCAA+TGG + Chr1:6004843-6004862 MsG0180000437.01.T01:CDS 35.0%
ATTCCTGTATACAACATAGC+AGG - Chr1:6004035-6004054 None:intergenic 35.0%
CACTTTACAGGTCTTCATTA+CGG + Chr1:6005657-6005676 MsG0180000437.01.T01:intron 35.0%
GACATTGAATCTCTCATTGA+GGG + Chr1:6005356-6005375 MsG0180000437.01.T01:intron 35.0%
GGATCAACTGTTGAAGTAAA+AGG + Chr1:6004932-6004951 MsG0180000437.01.T01:CDS 35.0%
GGCAATCAAATCAATATCAC+TGG + Chr1:6004893-6004912 MsG0180000437.01.T01:CDS 35.0%
GTCAAAGATAGTTGCATATG+AGG - Chr1:6005699-6005718 None:intergenic 35.0%
TCACAATGTAGACAATTCCA+AGG + Chr1:6004801-6004820 MsG0180000437.01.T01:intron 35.0%
TGATCCTTACTTAAGGGAAT+GGG + Chr1:6004106-6004125 MsG0180000437.01.T01:CDS 35.0%
TGGTCATGAGAAAATGGTAT+GGG + Chr1:6003887-6003906 MsG0180000437.01.T01:CDS 35.0%
TGTTCTTTACAGAGTTCTTG+AGG - Chr1:6005135-6005154 None:intergenic 35.0%
TTATCAAGCCAAAACTTCCT+TGG - Chr1:6004821-6004840 None:intergenic 35.0%
TTATCTCAGAACTGAATGCT+TGG + Chr1:6005980-6005999 MsG0180000437.01.T01:CDS 35.0%
TTGCGAGTTTCATACATATG+AGG + Chr1:6005812-6005831 MsG0180000437.01.T01:intron 35.0%
TTGGTCATGAGAAAATGGTA+TGG + Chr1:6003886-6003905 MsG0180000437.01.T01:CDS 35.0%
TTTATGTCACCAGGTATACT+TGG - Chr1:6003969-6003988 None:intergenic 35.0%
! AAGGAAATGATGGAAAATGG+AGG + Chr1:6004210-6004229 MsG0180000437.01.T01:CDS 35.0%
! AGACAATTCCAAGGAAGTTT+TGG + Chr1:6004810-6004829 MsG0180000437.01.T01:intron 35.0%
! AGGAAATGATGGAAAATGGA+GGG + Chr1:6004211-6004230 MsG0180000437.01.T01:CDS 35.0%
! AGGTCCATTATAGAGAGTTT+TGG + Chr1:6005856-6005875 MsG0180000437.01.T01:CDS 35.0%
! CATCAAGAAAAGGCATGATA+GGG + Chr1:6005160-6005179 MsG0180000437.01.T01:CDS 35.0%
! GCATGGCTAAATTTTGAACT+TGG - Chr1:6004073-6004092 None:intergenic 35.0%
! TCTGTTGCAAAGAAAGGTAT+AGG - Chr1:6004317-6004336 None:intergenic 35.0%
! TTTTCCCATTCCCTTAAGTA+AGG - Chr1:6004113-6004132 None:intergenic 35.0%
! TTTTTGACCATGCTAAGAAC+AGG + Chr1:6004588-6004607 MsG0180000437.01.T01:CDS 35.0%
!! TTAACTTTTCAAGGCTGATG+TGG + Chr1:6005047-6005066 MsG0180000437.01.T01:intron 35.0%
AACTCAGCACTTTGTAGATC+AGG - Chr1:6005090-6005109 None:intergenic 40.0%
ACAGGAGAATATTATGGGCA+TGG + Chr1:6004606-6004625 MsG0180000437.01.T01:CDS 40.0%
CAACAACTGTTTATGTCACC+AGG - Chr1:6003978-6003997 None:intergenic 40.0%
CAACAATGGAAGTCAGAATG+TGG + Chr1:6005957-6005976 MsG0180000437.01.T01:CDS 40.0%
CAGGAGAATATTATGGGCAT+GGG + Chr1:6004607-6004626 MsG0180000437.01.T01:CDS 40.0%
CGAGTTTCATACATATGAGG+TGG + Chr1:6005815-6005834 MsG0180000437.01.T01:intron 40.0%
CTGATCCTTACTTAAGGGAA+TGG + Chr1:6004105-6004124 MsG0180000437.01.T01:CDS 40.0%
CTGGTGACATAAACAGTTGT+TGG + Chr1:6003976-6003995 MsG0180000437.01.T01:CDS 40.0%
CTTCAACAGTTGATCCACTT+TGG - Chr1:6004928-6004947 None:intergenic 40.0%
GAACTGTAACATCGACAATG+TGG - Chr1:6005399-6005418 None:intergenic 40.0%
GAAGAGTTAGAAAAACTCCG+TGG + Chr1:6004872-6004891 MsG0180000437.01.T01:CDS 40.0%
GACATAAACAGTTGTTGGTC+AGG + Chr1:6003981-6004000 MsG0180000437.01.T01:CDS 40.0%
GCTAAAGCTTGCAAACCAAA+TGG - Chr1:6005186-6005205 None:intergenic 40.0%
GCTATTGAACCAAGTATACC+TGG + Chr1:6003957-6003976 MsG0180000437.01.T01:CDS 40.0%
GGAAAATGGAGGGTAATCAT+TGG + Chr1:6004221-6004240 MsG0180000437.01.T01:CDS 40.0%
GGTCATGAGAAAATGGTATG+GGG + Chr1:6003888-6003907 MsG0180000437.01.T01:CDS 40.0%
GTAATCATTGGTGCGCAAAA+TGG + Chr1:6004233-6004252 MsG0180000437.01.T01:CDS 40.0%
GTACCATCTGTTGCAAAGAA+AGG - Chr1:6004323-6004342 None:intergenic 40.0%
GTTTCATACATATGAGGTGG+TGG + Chr1:6005818-6005837 MsG0180000437.01.T01:intron 40.0%
TCTTGAGGATCAACTTCACT+TGG - Chr1:6005120-6005139 None:intergenic 40.0%
TTCTTTGCAACAGATGGTAC+TGG + Chr1:6004323-6004342 MsG0180000437.01.T01:CDS 40.0%
TTGCTGCATCAGGGTTATAT+TGG - Chr1:6003863-6003882 None:intergenic 40.0%
! AACATAGCAGGTTTTTCACC+TGG - Chr1:6004023-6004042 None:intergenic 40.0%
! ACATAGCAGGTTTTTCACCT+GGG - Chr1:6004022-6004041 None:intergenic 40.0%
! AGCTTTAGCATCAAAAGACC+AGG + Chr1:6005197-6005216 MsG0180000437.01.T01:CDS 40.0%
! GCATCAAGAAAAGGCATGAT+AGG + Chr1:6005159-6005178 MsG0180000437.01.T01:CDS 40.0%
! GGAGTCATCAAAGGATTTTG+AGG - Chr1:6004140-6004159 None:intergenic 40.0%
! GGCAAGGAAATGATGGAAAA+TGG + Chr1:6004207-6004226 MsG0180000437.01.T01:CDS 40.0%
!! AAAAGGTATCACTGCATCTC+AGG + Chr1:6004949-6004968 MsG0180000437.01.T01:CDS 40.0%
!! CAGTTCTAGATGGAAGTACA+TGG + Chr1:6005413-6005432 MsG0180000437.01.T01:CDS 40.0%
!! CATCGTCGACTCTATATATC+CGG - Chr1:6005245-6005264 None:intergenic 40.0%
!! GTCGATGTTACAGTTCTAGA+TGG + Chr1:6005403-6005422 MsG0180000437.01.T01:CDS 40.0%
!! TTTTTCACCTGGGAGTATAG+TGG - Chr1:6004012-6004031 None:intergenic 40.0%
!!! ATAGAGAGTTTTGGAGATGG+AGG + Chr1:6005865-6005884 MsG0180000437.01.T01:CDS 40.0%
!!! TAGAGAGTTTTGGAGATGGA+GGG + Chr1:6005866-6005885 MsG0180000437.01.T01:CDS 40.0%
AACCCTGATGCAGCAACATT+TGG + Chr1:6003867-6003886 MsG0180000437.01.T01:CDS 45.0%
ACTGCATGGCAAGGAAATGA+TGG + Chr1:6004200-6004219 MsG0180000437.01.T01:CDS 45.0%
ACTGGAGAAACACTCCAAAG+TGG + Chr1:6004911-6004930 MsG0180000437.01.T01:CDS 45.0%
AGCATGAAGCAAGCAGAGTT+TGG + Chr1:6006003-6006022 MsG0180000437.01.T01:CDS 45.0%
AGTTGAAGTCGGTGAATTCC+GGG + Chr1:6004169-6004188 MsG0180000437.01.T01:CDS 45.0%
ATATTGTTGTCCTCTCTGCC+TGG - Chr1:6005218-6005237 None:intergenic 45.0%
CGGATATATAGAGTCGACGA+TGG + Chr1:6005243-6005262 MsG0180000437.01.T01:CDS 45.0%
GACATTCAAAAAGGATGGGC+TGG + Chr1:6004656-6004675 MsG0180000437.01.T01:CDS 45.0%
GACCAAATGTTGCTGCATCA+GGG - Chr1:6003872-6003891 None:intergenic 45.0%
GAGAATATTATGGGCATGGG+CGG + Chr1:6004610-6004629 MsG0180000437.01.T01:CDS 45.0%
GAGTTGAAGTCGGTGAATTC+CGG + Chr1:6004168-6004187 MsG0180000437.01.T01:CDS 45.0%
GGTGGTATATGCAGATTGAC+AGG + Chr1:6005836-6005855 MsG0180000437.01.T01:intron 45.0%
TGACCAAATGTTGCTGCATC+AGG - Chr1:6003873-6003892 None:intergenic 45.0%
TGATGATAAGTGACCAGACC+AGG + Chr1:6005277-6005296 MsG0180000437.01.T01:CDS 45.0%
TTACAGGTCTTCATTACGGG+AGG + Chr1:6005661-6005680 MsG0180000437.01.T01:intron 45.0%
TTTCCTTGCCATGCAGTTGA+AGG - Chr1:6004197-6004216 None:intergenic 45.0%
! AAAGGCATGATAGGGCCATT+TGG + Chr1:6005168-6005187 MsG0180000437.01.T01:CDS 45.0%
CATCAAAAGACCAGGCAGAG+AGG + Chr1:6005205-6005224 MsG0180000437.01.T01:CDS 50.0%
CCACCTAGTGGAGTTGAAGT+CGG + Chr1:6004158-6004177 MsG0180000437.01.T01:CDS 50.0%
CCACTAGGTGGAGTCATCAA+AGG - Chr1:6004149-6004168 None:intergenic 50.0%
GATCCTTCAACTGCATGGCA+AGG + Chr1:6004191-6004210 MsG0180000437.01.T01:CDS 50.0%
! CCTTTGATGACTCCACCTAG+TGG + Chr1:6004146-6004165 MsG0180000437.01.T01:CDS 50.0%
!! AAAAGGATGGGCTGGTCTTC+AGG + Chr1:6004664-6004683 MsG0180000437.01.T01:CDS 50.0%
!! TCACCGACTTCAACTCCACT+AGG - Chr1:6004164-6004183 None:intergenic 50.0%
CCGACTTCAACTCCACTAGG+TGG - Chr1:6004161-6004180 None:intergenic 55.0%
GCCATGCAGTTGAAGGATCC+CGG - Chr1:6004190-6004209 None:intergenic 55.0%
GGTGCGCAAAATGGCGATGA+AGG + Chr1:6004242-6004261 MsG0180000437.01.T01:CDS 55.0%
TCCGGGATCCTTCAACTGCA+TGG + Chr1:6004186-6004205 MsG0180000437.01.T01:CDS 55.0%
GGCTCAGCCACTATACTCCC+AGG + Chr1:6004002-6004021 MsG0180000437.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 6003828 6006044 6003828 ID=MsG0180000437.01;Name=MsG0180000437.01
Chr1 mRNA 6003828 6006044 6003828 ID=MsG0180000437.01.T01;Parent=MsG0180000437.01;Name=MsG0180000437.01.T01;_AED=0.46;_eAED=0.50;_QI=0|0|0|1|1|1|6|0|551
Chr1 exon 6003828 6004685 6003828 ID=MsG0180000437.01.T01:exon:28051;Parent=MsG0180000437.01.T01
Chr1 exon 6004812 6004970 6004812 ID=MsG0180000437.01.T01:exon:28050;Parent=MsG0180000437.01.T01
Chr1 exon 6005060 6005298 6005060 ID=MsG0180000437.01.T01:exon:28049;Parent=MsG0180000437.01.T01
Chr1 exon 6005396 6005509 6005396 ID=MsG0180000437.01.T01:exon:28048;Parent=MsG0180000437.01.T01
Chr1 exon 6005667 6005757 6005667 ID=MsG0180000437.01.T01:exon:28047;Parent=MsG0180000437.01.T01
Chr1 exon 6005850 6006044 6005850 ID=MsG0180000437.01.T01:exon:28046;Parent=MsG0180000437.01.T01
Chr1 CDS 6003828 6004685 6003828 ID=MsG0180000437.01.T01:cds;Parent=MsG0180000437.01.T01
Chr1 CDS 6004812 6004970 6004812 ID=MsG0180000437.01.T01:cds;Parent=MsG0180000437.01.T01
Chr1 CDS 6005060 6005298 6005060 ID=MsG0180000437.01.T01:cds;Parent=MsG0180000437.01.T01
Chr1 CDS 6005396 6005509 6005396 ID=MsG0180000437.01.T01:cds;Parent=MsG0180000437.01.T01
Chr1 CDS 6005667 6005757 6005667 ID=MsG0180000437.01.T01:cds;Parent=MsG0180000437.01.T01
Chr1 CDS 6005850 6006044 6005850 ID=MsG0180000437.01.T01:cds;Parent=MsG0180000437.01.T01
Gene Sequence

>MsG0180000437.01.T01

ATGTACTATAAAGGAGTTTACCATTTATTCTACCAATATAACCCTGATGCAGCAACATTTGGTCATGAGAAAATGGTATGGGGTCATTCTATATCAAATGATCTCATAAATTGGACTCATCTAAATGATGCTATTGAACCAAGTATACCTGGTGACATAAACAGTTGTTGGTCAGGCTCAGCCACTATACTCCCAGGTGAAAAACCTGCTATGTTGTATACAGGAATTGATGAAAATAGACACCAAGTTCAAAATTTAGCCATGCCAAAGAATCTATCTGATCCTTACTTAAGGGAATGGGAAAAACATCCTCAAAATCCTTTGATGACTCCACCTAGTGGAGTTGAAGTCGGTGAATTCCGGGATCCTTCAACTGCATGGCAAGGAAATGATGGAAAATGGAGGGTAATCATTGGTGCGCAAAATGGCGATGAAGGAAAAATTATTCTTTACAAAAGTGAGGATTTTGTTAAGTGGATATTGGATCCTATACCTTTCTTTGCAACAGATGGTACTGGAGTTTGTGAATGTCCAGATTTTTTTCCTGTGTATATCAATAACACAAATGGAGTTGATACAACTATGGAAAATTCAAGCGTTAGACATGTCTTGAAGATAAGCTATCTACGTAGACGTCATGACTATTACTTTATTGGAAAATATGTATCTGATCAGGAAGAGTTTATTCCTGATGTAAAATTTACAGGAACTTGGAAGGAATTGAGATTTGACTATGGAAAGGTTTATGCTTCAAAGTCATTTTTTGACCATGCTAAGAACAGGAGAATATTATGGGCATGGGCGGAAGAGTCCGACTCTAGTGAAAATGACATTCAAAAAGGATGGGCTGGTCTTCAGACAATTCCAAGGAAGTTTTGGCTTGATAAGAATGGGAAGCAATTAATGCAATGGCCAATTGAAGAGTTAGAAAAACTCCGTGGCAATCAAATCAATATCACTGGAGAAACACTCCAAAGTGGATCAACTGTTGAAGTAAAAGGTATCACTGCATCTCAGGCTGATGTGGAAGTCTTGTTTGAGCTACCTGATCTACAAAGTGCTGAGTTGCTAGAACCAAGTGAAGTTGATCCTCAAGAACTCTGTAAAGAACAATATGCATCAAGAAAAGGCATGATAGGGCCATTTGGTTTGCAAGCTTTAGCATCAAAAGACCAGGCAGAGAGGACAACAATATCTTTCCGGATATATAGAGTCGACGATGGATTTAAATGCTTGATGATAAGTGACCAGACCAGCCACATTGTCGATGTTACAGTTCTAGATGGAAGTACATGGATAACAGAAAAGCATAGAAAGGGAAATAAAACAGAAATTGTATTTGATAATGAGAATGTTGATTTTATCAAAGGGTCTTCATTACGGGAGGACGTTGAAAAAACCTCATATGCAACTATCTTTGACATTGATCCCAATCTCAAAACTATTTCACTTAGAAGCTTGATTGACAGGTCCATTATAGAGAGTTTTGGAGATGGAGGGAGAGCTTGCATAACAAGCAGATCTTATCCTTTATTTGCTACAGAAAAAGATGCTCATCTTTATGTATTCAACAATGGAAGTCAGAATGTGGTTATCTCAGAACTGAATGCTTGGAGCATGAAGCAAGCAGAGTTTGGCACAGAAAGTATAATATAG

Protein sequence

>MsG0180000437.01.T01

MYYKGVYHLFYQYNPDAATFGHEKMVWGHSISNDLINWTHLNDAIEPSIPGDINSCWSGSATILPGEKPAMLYTGIDENRHQVQNLAMPKNLSDPYLREWEKHPQNPLMTPPSGVEVGEFRDPSTAWQGNDGKWRVIIGAQNGDEGKIILYKSEDFVKWILDPIPFFATDGTGVCECPDFFPVYINNTNGVDTTMENSSVRHVLKISYLRRRHDYYFIGKYVSDQEEFIPDVKFTGTWKELRFDYGKVYASKSFFDHAKNRRILWAWAEESDSSENDIQKGWAGLQTIPRKFWLDKNGKQLMQWPIEELEKLRGNQINITGETLQSGSTVEVKGITASQADVEVLFELPDLQSAELLEPSEVDPQELCKEQYASRKGMIGPFGLQALASKDQAERTTISFRIYRVDDGFKCLMISDQTSHIVDVTVLDGSTWITEKHRKGNKTEIVFDNENVDFIKGSSLREDVEKTSYATIFDIDPNLKTISLRSLIDRSIIESFGDGGRACITSRSYPLFATEKDAHLYVFNNGSQNVVISELNAWSMKQAEFGTESII*