AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000602.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000602.01.T01 MTR_1g012520 51.923 312 78 5 42 292 1 301 5.95e-90 282
MsG0180000602.01.T01 MTR_1g012520 57.037 135 22 1 195 329 452 550 1.30e-36 139
MsG0180000602.01.T01 MTR_3g107280 40.864 301 109 7 50 292 10 299 4.01e-53 184
MsG0180000602.01.T01 MTR_3g107280 31.720 186 83 2 188 329 363 548 1.06e-16 81.3
MsG0180000602.01.T01 MTR_4g114640 34.241 257 131 9 70 309 21 256 7.95e-27 111
MsG0180000602.01.T01 MTR_4g114640 48.148 135 57 4 197 329 417 540 7.94e-26 108
MsG0180000602.01.T01 MTR_4g114650 49.630 135 55 4 197 329 387 510 3.28e-26 109
MsG0180000602.01.T01 MTR_4g114650 38.208 212 117 5 76 282 30 232 6.77e-26 108
MsG0180000602.01.T01 MTR_4g114650 49.630 135 55 4 197 329 383 506 3.42e-26 109
MsG0180000602.01.T01 MTR_4g114650 38.208 212 117 5 76 282 26 228 7.20e-26 108
MsG0180000602.01.T01 MTR_4g114650 49.630 135 55 4 197 329 438 561 3.54e-26 109
MsG0180000602.01.T01 MTR_4g114650 38.208 212 117 5 76 282 81 283 8.48e-26 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000602.01.T01 AT2G25490 35.207 338 147 10 42 325 1 320 7.23e-45 162
MsG0180000602.01.T01 AT2G25490 33.333 186 77 4 188 329 353 535 6.13e-20 90.9
MsG0180000602.01.T01 AT5G25350 31.790 324 141 9 46 321 5 296 4.04e-34 132
MsG0180000602.01.T01 AT5G25350 38.587 184 68 3 191 329 346 529 1.05e-22 99.4

Find 74 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGATATAACCTTAAGATT+TGG 0.265371 1:+8505632 None:intergenic
CTTCAACAAGTTGAATTAAC+TGG 0.274879 1:-8504995 MsG0180000602.01.T01:CDS
CCTTCTTTCCTTCCAAGCTT+CGG 0.280846 1:+8506021 None:intergenic
CAGGAAGAAATTTGCTTCCT+TGG 0.285276 1:+8506365 None:intergenic
CTTCTTTCCTTCCAAGCTTC+GGG 0.291790 1:+8506022 None:intergenic
CTCAAATGACGAGAATAAAA+TGG 0.294170 1:-8506083 MsG0180000602.01.T01:CDS
TAGATATAACCTTAAGATTT+GGG 0.344478 1:+8505633 None:intergenic
GTTGAATTAACTGGACTTAA+GGG 0.349439 1:-8504986 MsG0180000602.01.T01:CDS
AGGAAGAAATTTGCTTCCTT+GGG 0.350453 1:+8506366 None:intergenic
GCAAATTTCTTCCTGTCTCT+TGG 0.351075 1:-8506357 MsG0180000602.01.T01:CDS
CTCGAAATTCTGAACCTTGA+AGG 0.357149 1:-8504833 MsG0180000602.01.T01:CDS
AGTTGAATTAACTGGACTTA+AGG 0.362492 1:-8504987 MsG0180000602.01.T01:CDS
TCTTAATTTGTTATGTGGTA+TGG 0.378874 1:-8506784 MsG0180000602.01.T01:CDS
GCACAATCGTTTATGTTCTC+AGG 0.383637 1:-8506423 MsG0180000602.01.T01:CDS
TTAAGTGGTGAAATTTCAAC+TGG 0.385627 1:-8506749 MsG0180000602.01.T01:CDS
GCCTCTTTGAGATCTTTAGA+AGG 0.392355 1:-8506212 MsG0180000602.01.T01:CDS
CCCTGGTCAATCTGCATGGT+TGG 0.402559 1:-8504859 MsG0180000602.01.T01:CDS
ATCCATTAGCGATCTCAATA+AGG 0.403036 1:+8505812 None:intergenic
GAAAGTGACTGTGAAGAGTT+TGG 0.407597 1:-8506061 MsG0180000602.01.T01:CDS
CTTAAGGGAGTCACAGATGC+TGG 0.425211 1:-8504971 MsG0180000602.01.T01:CDS
GGCCTTATTGAGATCGCTAA+TGG 0.425507 1:-8505814 MsG0180000602.01.T01:CDS
ATCTCAAAGAGGCACTCATC+TGG 0.426649 1:+8506222 None:intergenic
AAAGTTCTGCCCAAATCTTA+AGG 0.427807 1:-8505642 MsG0180000602.01.T01:CDS
AATTCTCTTAATTTGTTATG+TGG 0.431254 1:-8506789 MsG0180000602.01.T01:CDS
AAAGCCTTGTCGGAAATTGC+AGG 0.435432 1:+8505754 None:intergenic
AACGATTGTGCAAAATCATC+AGG 0.438671 1:+8506435 None:intergenic
CATTCTCCATCGAAAACAAA+TGG 0.441047 1:+8506282 None:intergenic
CAGAAGCATAAGCCAGCGTT+TGG 0.444467 1:+8506149 None:intergenic
GCACTCCTTTCTTCACCAAC+AGG 0.449873 1:+8506186 None:intergenic
AGGGATACTTTCCCGAAGCT+TGG 0.451548 1:-8506033 MsG0180000602.01.T01:CDS
AACTTTAACAAGACCAGCCT+CGG 0.457238 1:+8504925 None:intergenic
CAACTTGAGGGCCAAGAGAC+AGG 0.463141 1:+8506346 None:intergenic
CCGAAGCTTGGAAGGAAAGA+AGG 0.469354 1:-8506021 MsG0180000602.01.T01:CDS
AATGATAACTCGGTCAGATT+CGG 0.472690 1:+8505709 None:intergenic
AACTGCGGTTAAAGCCTTGT+CGG 0.474915 1:+8505744 None:intergenic
TTGCTTGAGAGCTCCGAGGC+TGG 0.476623 1:-8504938 MsG0180000602.01.T01:CDS
CTGCTTGTGTTTCCAAACGC+TGG 0.478903 1:-8506161 MsG0180000602.01.T01:CDS
CAGGGATGAAACTACTTTGT+CGG 0.506121 1:+8504877 None:intergenic
TCTTAAGGTTATATCTATCA+AGG 0.507799 1:-8505627 MsG0180000602.01.T01:CDS
GCCTCGGAGCTCTCAAGCAA+TGG 0.512849 1:+8504941 None:intergenic
GGTTGCCTGTTGGTGAAGAA+AGG 0.514240 1:-8506191 MsG0180000602.01.T01:CDS
TTGTCTAGCATTCGCAATGA+AGG 0.520108 1:-8505680 MsG0180000602.01.T01:CDS
TCCAACCATGCAGATTGACC+AGG 0.536554 1:+8504858 None:intergenic
ATACTTTCCCGAAGCTTGGA+AGG 0.537764 1:-8506029 MsG0180000602.01.T01:CDS
TCATCCCTGGTCAATCTGCA+TGG 0.552095 1:-8504863 MsG0180000602.01.T01:CDS
CTGTGAAGAGTTTGGAGGTG+AGG 0.561043 1:-8506053 MsG0180000602.01.T01:CDS
GATAGTAGACATCAACTTGA+GGG 0.562773 1:+8506334 None:intergenic
CGACAAAGTAGTTTCATCCC+TGG 0.562846 1:-8504876 MsG0180000602.01.T01:CDS
TGGATAATCATGTGGTTAAG+TGG 0.567277 1:-8506764 MsG0180000602.01.T01:CDS
TGTGAAGAGTTTGGAGGTGA+GGG 0.567927 1:-8506052 MsG0180000602.01.T01:CDS
ATATCTATCAAGGACTGTGC+CGG 0.574521 1:-8505617 MsG0180000602.01.T01:intron
TTAAGGGAGTCACAGATGCT+GGG 0.582917 1:-8504970 MsG0180000602.01.T01:CDS
AAATTGCAGGGCATTTGCAA+AGG 0.585154 1:+8505767 None:intergenic
CTTGTTAAAGTTAATCTCAG+TGG 0.588339 1:-8504914 MsG0180000602.01.T01:CDS
AATGAAGGTCTACAAGCCAT+TGG 0.590793 1:-8505665 MsG0180000602.01.T01:CDS
TTTATTCTCGTCATTTGAGG+AGG 0.593111 1:+8506087 None:intergenic
ATTTGGGCAGAACTTTCCAA+TGG 0.599132 1:+8505649 None:intergenic
AAGCCTTGTCGGAAATTGCA+GGG 0.607035 1:+8505755 None:intergenic
GGAAGAAATTTGCTTCCTTG+GGG 0.618210 1:+8506367 None:intergenic
ATCTTTAGAAGGTTGCCTGT+TGG 0.625556 1:-8506201 MsG0180000602.01.T01:CDS
GGATAGTAGACATCAACTTG+AGG 0.626268 1:+8506333 None:intergenic
ACACGTGATCTCTTCTGAGG+TGG 0.627046 1:+8506312 None:intergenic
ACAAGACTCTAATGATAACT+CGG 0.627065 1:+8505699 None:intergenic
ATGCCCTGCAATTTCCGACA+AGG 0.628954 1:-8505758 MsG0180000602.01.T01:CDS
CGGACACTTCTTTGCAACTG+CGG 0.631276 1:+8505729 None:intergenic
CTGACACGTGATCTCTTCTG+AGG 0.633789 1:+8506309 None:intergenic
AGTGACTGTGAAGAGTTTGG+AGG 0.636749 1:-8506058 MsG0180000602.01.T01:CDS
TCCATTGCTTGAGAGCTCCG+AGG 0.656114 1:-8504942 MsG0180000602.01.T01:CDS
ACCTTCTAAAGATCTCAAAG+AGG 0.665153 1:+8506211 None:intergenic
CCAACCATGCAGATTGACCA+GGG 0.686419 1:+8504859 None:intergenic
GGTTTGTGTATAACCCACCA+TGG 0.686541 1:+8506388 None:intergenic
ATGTGGTATGGATAATCATG+TGG 0.688044 1:-8506772 MsG0180000602.01.T01:CDS
TAAGTGGTGAAATTTCAACT+GGG 0.713039 1:-8506748 MsG0180000602.01.T01:intron
TGGGTTATACACAAACCCCA+AGG 0.726645 1:-8506382 MsG0180000602.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATCTATAAGATTAGTATT+TGG - Chr1:8504901-8504920 MsG0180000602.01.T01:CDS 20.0%
!! ATAGATATAACCTTAAGATT+TGG + Chr1:8505979-8505998 None:intergenic 20.0%
!! GATCTATAAGATTAGTATTT+GGG - Chr1:8504902-8504921 MsG0180000602.01.T01:CDS 20.0%
!! TAGATATAACCTTAAGATTT+GGG + Chr1:8505978-8505997 None:intergenic 20.0%
!!! AATTCTCTTAATTTGTTATG+TGG - Chr1:8504819-8504838 MsG0180000602.01.T01:CDS 20.0%
!!! TTTTACTTTTCTGATATCAT+AGG - Chr1:8505033-8505052 MsG0180000602.01.T01:intron 20.0%
! TCTTAAGGTTATATCTATCA+AGG - Chr1:8505981-8506000 MsG0180000602.01.T01:intron 25.0%
! TTTATGGAATGTTTCTTTGT+TGG - Chr1:8505764-8505783 MsG0180000602.01.T01:CDS 25.0%
!!! ACATAGTTTTGATTGATTAG+CGG - Chr1:8504936-8504955 MsG0180000602.01.T01:CDS 25.0%
!!! TCTTAATTTGTTATGTGGTA+TGG - Chr1:8504824-8504843 MsG0180000602.01.T01:CDS 25.0%
!!! TGATATTTTTACAACCTTCA+AGG + Chr1:8506792-8506811 None:intergenic 25.0%
ACAAGACTCTAATGATAACT+CGG + Chr1:8505912-8505931 None:intergenic 30.0%
AGTTGAATTAACTGGACTTA+AGG - Chr1:8506621-8506640 MsG0180000602.01.T01:intron 30.0%
CTAACATTTGGAGGAAATTA+AGG + Chr1:8506155-8506174 None:intergenic 30.0%
CTATAAGATTAGTATTTGGG+AGG - Chr1:8504905-8504924 MsG0180000602.01.T01:CDS 30.0%
CTCAAATGACGAGAATAAAA+TGG - Chr1:8505525-8505544 MsG0180000602.01.T01:intron 30.0%
CTTGTTAAAGTTAATCTCAG+TGG - Chr1:8506694-8506713 MsG0180000602.01.T01:intron 30.0%
GTTGAATTAACTGGACTTAA+GGG - Chr1:8506622-8506641 MsG0180000602.01.T01:intron 30.0%
TAAGTGGTGAAATTTCAACT+GGG - Chr1:8504860-8504879 MsG0180000602.01.T01:CDS 30.0%
TTAAGTGGTGAAATTTCAAC+TGG - Chr1:8504859-8504878 MsG0180000602.01.T01:CDS 30.0%
! AAAGAGAAAGACTTTAGAGA+AGG + Chr1:8505747-8505766 None:intergenic 30.0%
! AGATGTACGCTTTTCAAATT+AGG + Chr1:8506295-8506314 None:intergenic 30.0%
! ATTTTGCACCACAGTTAAAA+AGG + Chr1:8506438-8506457 None:intergenic 30.0%
! CATTTTATTCTCGTCATTTG+AGG + Chr1:8505527-8505546 None:intergenic 30.0%
! CTTCAACAAGTTGAATTAAC+TGG - Chr1:8506613-8506632 MsG0180000602.01.T01:intron 30.0%
!! AAGCAGTTTGTTGAATTTGA+TGG - Chr1:8505095-8505114 MsG0180000602.01.T01:intron 30.0%
!! ATTACCCAATTTGGGTTTTT+CGG - Chr1:8506409-8506428 MsG0180000602.01.T01:CDS 30.0%
!! CAAAATGAAGGCTTTTTCTA+TGG - Chr1:8506452-8506471 MsG0180000602.01.T01:CDS 30.0%
!! CTCTAAAGTCTTTCTCTTTA+TGG - Chr1:8505748-8505767 MsG0180000602.01.T01:CDS 30.0%
!!! TTGAGAAGTTTGTTTTGCAT+AGG - Chr1:8505064-8505083 MsG0180000602.01.T01:intron 30.0%
AAAGCGTACATCTTCATAAG+TGG - Chr1:8506302-8506321 MsG0180000602.01.T01:CDS 35.0%
AAAGTTCTGCCCAAATCTTA+AGG - Chr1:8505966-8505985 MsG0180000602.01.T01:intron 35.0%
AACGATTGTGCAAAATCATC+AGG + Chr1:8505176-8505195 None:intergenic 35.0%
AAGCGTACATCTTCATAAGT+GGG - Chr1:8506303-8506322 MsG0180000602.01.T01:CDS 35.0%
AAGTGATTCACAAGAGATAC+AGG + Chr1:8506519-8506538 None:intergenic 35.0%
AATAGCAGCAAGTCTAACAT+CGG + Chr1:8505616-8505635 None:intergenic 35.0%
AATGATAACTCGGTCAGATT+CGG + Chr1:8505902-8505921 None:intergenic 35.0%
ATCACTTGAAAGCCTACAAT+TGG - Chr1:8506372-8506391 MsG0180000602.01.T01:CDS 35.0%
ATCCATTAGCGATCTCAATA+AGG + Chr1:8505799-8505818 None:intergenic 35.0%
ATGTGGTATGGATAATCATG+TGG - Chr1:8504836-8504855 MsG0180000602.01.T01:CDS 35.0%
CATTCTCCATCGAAAACAAA+TGG + Chr1:8505329-8505348 None:intergenic 35.0%
GAGGAAATTAAGGACAAGAT+CGG + Chr1:8506145-8506164 None:intergenic 35.0%
GATAGTAGACATCAACTTGA+GGG + Chr1:8505277-8505296 None:intergenic 35.0%
TGGATAATCATGTGGTTAAG+TGG - Chr1:8504844-8504863 MsG0180000602.01.T01:CDS 35.0%
TTAACTGTGGTGCAAAATGA+AGG - Chr1:8506440-8506459 MsG0180000602.01.T01:CDS 35.0%
TTTATTCTCGTCATTTGAGG+AGG + Chr1:8505524-8505543 None:intergenic 35.0%
! ACCTTCTAAAGATCTCAAAG+AGG + Chr1:8505400-8505419 None:intergenic 35.0%
! AGGAAGAAATTTGCTTCCTT+GGG + Chr1:8505245-8505264 None:intergenic 35.0%
!! AATTCAACTTGTTGAAGCTG+AGG + Chr1:8506610-8506629 None:intergenic 35.0%
!! AGTGTTCCATTTGTTTTCGA+TGG - Chr1:8505320-8505339 MsG0180000602.01.T01:intron 35.0%
!! CATTTGTTTTCGATGGAGAA+TGG - Chr1:8505327-8505346 MsG0180000602.01.T01:intron 35.0%
!! TGTTTCTTTGTTGGTGATGA+AGG - Chr1:8505773-8505792 MsG0180000602.01.T01:CDS 35.0%
AACAGCTTCAATCCCAACAT+CGG + Chr1:8506260-8506279 None:intergenic 40.0%
AACTTTAACAAGACCAGCCT+CGG + Chr1:8506686-8506705 None:intergenic 40.0%
AATGAAGGTCTACAAGCCAT+TGG - Chr1:8505943-8505962 MsG0180000602.01.T01:intron 40.0%
ACAACTTTCCGAGTACAGAA+AGG + Chr1:8506586-8506605 None:intergenic 40.0%
ACCCAAATTGGGTAATTCTG+TGG + Chr1:8506405-8506424 None:intergenic 40.0%
AGCTAGAGAGAGATCAGAAA+CGG + Chr1:8506094-8506113 None:intergenic 40.0%
ATATCTATCAAGGACTGTGC+CGG - Chr1:8505991-8506010 MsG0180000602.01.T01:intron 40.0%
ATTTGGGCAGAACTTTCCAA+TGG + Chr1:8505962-8505981 None:intergenic 40.0%
CAACTTTCCGAGTACAGAAA+GGG + Chr1:8506585-8506604 None:intergenic 40.0%
CAGGGATGAAACTACTTTGT+CGG + Chr1:8506734-8506753 None:intergenic 40.0%
CCAAAGAAGTCGAAGAAAAC+AGG + Chr1:8506041-8506060 None:intergenic 40.0%
CTAGCTGTTATTGGACACTA+TGG - Chr1:8506108-8506127 MsG0180000602.01.T01:CDS 40.0%
CTCGAAATTCTGAACCTTGA+AGG - Chr1:8506775-8506794 MsG0180000602.01.T01:CDS 40.0%
GAAAGTGACTGTGAAGAGTT+TGG - Chr1:8505547-8505566 MsG0180000602.01.T01:intron 40.0%
GATCTCTCTCTAGCTGTTAT+TGG - Chr1:8506099-8506118 MsG0180000602.01.T01:CDS 40.0%
GCAAATTTCTTCCTGTCTCT+TGG - Chr1:8505251-8505270 MsG0180000602.01.T01:intron 40.0%
GCACAATCGTTTATGTTCTC+AGG - Chr1:8505185-8505204 MsG0180000602.01.T01:intron 40.0%
GCCACAGAATTACCCAATTT+GGG - Chr1:8506401-8506420 MsG0180000602.01.T01:CDS 40.0%
GGATAGTAGACATCAACTTG+AGG + Chr1:8505278-8505297 None:intergenic 40.0%
TGCCACAGAATTACCCAATT+TGG - Chr1:8506400-8506419 MsG0180000602.01.T01:CDS 40.0%
TGGGTTATGGGAAATGCTAA+TGG - Chr1:8506187-8506206 MsG0180000602.01.T01:CDS 40.0%
TTCAAGTGATATAGCAGCCT+TGG + Chr1:8506362-8506381 None:intergenic 40.0%
TTGTCTAGCATTCGCAATGA+AGG - Chr1:8505928-8505947 MsG0180000602.01.T01:intron 40.0%
! AAATTGCAGGGCATTTGCAA+AGG + Chr1:8505844-8505863 None:intergenic 40.0%
! ATCTTTAGAAGGTTGCCTGT+TGG - Chr1:8505407-8505426 MsG0180000602.01.T01:intron 40.0%
! CAGGAAGAAATTTGCTTCCT+TGG + Chr1:8505246-8505265 None:intergenic 40.0%
! CCTGTTTTCTTCGACTTCTT+TGG - Chr1:8506038-8506057 MsG0180000602.01.T01:CDS 40.0%
! CGGATTGATTTCATTCACCA+AGG - Chr1:8506342-8506361 MsG0180000602.01.T01:CDS 40.0%
! GGAAGAAATTTGCTTCCTTG+GGG + Chr1:8505244-8505263 None:intergenic 40.0%
! GTGATAACTTTTGCCATGGT+GGG - Chr1:8505207-8505226 MsG0180000602.01.T01:intron 40.0%
! TCAGGTGATAACTTTTGCCA+TGG - Chr1:8505203-8505222 MsG0180000602.01.T01:intron 40.0%
! TTTCTATGGTGAGCTGCTTT+GGG - Chr1:8506466-8506485 MsG0180000602.01.T01:CDS 40.0%
! TTTTCTATGGTGAGCTGCTT+TGG - Chr1:8506465-8506484 MsG0180000602.01.T01:CDS 40.0%
!! GACTTCTTTGGTTCTGACAA+AGG - Chr1:8506050-8506069 MsG0180000602.01.T01:CDS 40.0%
!! GCCTCTTTGAGATCTTTAGA+AGG - Chr1:8505396-8505415 MsG0180000602.01.T01:intron 40.0%
AAAGGTGAAGCTTCAAGCAC+TGG - Chr1:8506068-8506087 MsG0180000602.01.T01:CDS 45.0%
AACGCTACCCTTTCTGTACT+CGG - Chr1:8506575-8506594 MsG0180000602.01.T01:intron 45.0%
AATGTTAGTGAGAGAGGCTC+TGG - Chr1:8506167-8506186 MsG0180000602.01.T01:CDS 45.0%
AGTGACTGTGAAGAGTTTGG+AGG - Chr1:8505550-8505569 MsG0180000602.01.T01:intron 45.0%
ATACTTTCCCGAAGCTTGGA+AGG - Chr1:8505579-8505598 MsG0180000602.01.T01:intron 45.0%
ATCTGTAACTGCCCTGGATT+TGG - Chr1:8506551-8506570 MsG0180000602.01.T01:intron 45.0%
ATGTTAGTGAGAGAGGCTCT+GGG - Chr1:8506168-8506187 MsG0180000602.01.T01:CDS 45.0%
CCTCCAAATGTTAGTGAGAG+AGG - Chr1:8506161-8506180 MsG0180000602.01.T01:CDS 45.0%
CCTCTCTCACTAACATTTGG+AGG + Chr1:8506164-8506183 None:intergenic 45.0%
CCTTCTTTCCTTCCAAGCTT+CGG + Chr1:8505590-8505609 None:intergenic 45.0%
CGACAAAGTAGTTTCATCCC+TGG - Chr1:8506732-8506751 MsG0180000602.01.T01:intron 45.0%
CTTCTTTCCTTCCAAGCTTC+GGG + Chr1:8505589-8505608 None:intergenic 45.0%
GACGCCGAAAAACCCAAATT+GGG + Chr1:8506416-8506435 None:intergenic 45.0%
GAGCCTCTCTCACTAACATT+TGG + Chr1:8506167-8506186 None:intergenic 45.0%
GATGTTGGGATTGAAGCTGT+TGG - Chr1:8506259-8506278 MsG0180000602.01.T01:CDS 45.0%
GGGATTGAAGCTGTTGGAAA+GGG - Chr1:8506265-8506284 MsG0180000602.01.T01:CDS 45.0%
GGTTTGTGTATAACCCACCA+TGG + Chr1:8505223-8505242 None:intergenic 45.0%
TGGGATTGAAGCTGTTGGAA+AGG - Chr1:8506264-8506283 MsG0180000602.01.T01:CDS 45.0%
TGGGCATTTCTCTCAGACAA+CGG - Chr1:8506322-8506341 MsG0180000602.01.T01:CDS 45.0%
TGGGTTATACACAAACCCCA+AGG - Chr1:8505226-8505245 MsG0180000602.01.T01:intron 45.0%
TGTGAAGAGTTTGGAGGTGA+GGG - Chr1:8505556-8505575 MsG0180000602.01.T01:intron 45.0%
TGTGGCACTCTTCCAATTGT+AGG + Chr1:8506387-8506406 None:intergenic 45.0%
TTAAGGGAGTCACAGATGCT+GGG - Chr1:8506638-8506657 MsG0180000602.01.T01:intron 45.0%
TTATCGATCTGTAACTGCCC+TGG - Chr1:8506545-8506564 MsG0180000602.01.T01:intron 45.0%
! AAAGCCTTGTCGGAAATTGC+AGG + Chr1:8505857-8505876 None:intergenic 45.0%
! AACTGCGGTTAAAGCCTTGT+CGG + Chr1:8505867-8505886 None:intergenic 45.0%
! AAGCCTTGTCGGAAATTGCA+GGG + Chr1:8505856-8505875 None:intergenic 45.0%
! GGTGATAACTTTTGCCATGG+TGG - Chr1:8505206-8505225 MsG0180000602.01.T01:intron 45.0%
!! AGACTTGCTGCTATTGCAGT+TGG - Chr1:8505621-8505640 MsG0180000602.01.T01:CDS 45.0%
!! ATCTCAAAGAGGCACTCATC+TGG + Chr1:8505389-8505408 None:intergenic 45.0%
!! GGCCTTATTGAGATCGCTAA+TGG - Chr1:8505794-8505813 MsG0180000602.01.T01:CDS 45.0%
!! TTCGGCGTCCTTTTTAACTG+TGG - Chr1:8506427-8506446 MsG0180000602.01.T01:CDS 45.0%
ACTGCATCACGAGGAGGATT+AGG - Chr1:8505645-8505664 MsG0180000602.01.T01:CDS 50.0%
AGGGATACTTTCCCGAAGCT+TGG - Chr1:8505575-8505594 MsG0180000602.01.T01:intron 50.0%
ATGCCCTGCAATTTCCGACA+AGG - Chr1:8505850-8505869 MsG0180000602.01.T01:intron 50.0%
CCAACCATGCAGATTGACCA+GGG + Chr1:8506752-8506771 None:intergenic 50.0%
CCGAAGCTTGGAAGGAAAGA+AGG - Chr1:8505587-8505606 MsG0180000602.01.T01:intron 50.0%
CGGACACTTCTTTGCAACTG+CGG + Chr1:8505882-8505901 None:intergenic 50.0%
CTCACAATTGCATCCTGCAG+AGG - Chr1:8506229-8506248 MsG0180000602.01.T01:CDS 50.0%
CTGACACGTGATCTCTTCTG+AGG + Chr1:8505302-8505321 None:intergenic 50.0%
CTGCATCACGAGGAGGATTA+GGG - Chr1:8505646-8505665 MsG0180000602.01.T01:CDS 50.0%
CTGCTTGTGTTTCCAAACGC+TGG - Chr1:8505447-8505466 MsG0180000602.01.T01:intron 50.0%
CTGTGAAGAGTTTGGAGGTG+AGG - Chr1:8505555-8505574 MsG0180000602.01.T01:intron 50.0%
CTTAAGGGAGTCACAGATGC+TGG - Chr1:8506637-8506656 MsG0180000602.01.T01:intron 50.0%
GATTCCTTGATCCCCAACAC+CGG + Chr1:8506013-8506032 None:intergenic 50.0%
GCACTCCTTTCTTCACCAAC+AGG + Chr1:8505425-8505444 None:intergenic 50.0%
GCAGAGGAGTAACCGATGTT+GGG - Chr1:8506245-8506264 MsG0180000602.01.T01:CDS 50.0%
GGACGCCGAAAAACCCAAAT+TGG + Chr1:8506417-8506436 None:intergenic 50.0%
GGTCTCAAAGCAGTTGCTAG+TGG - Chr1:8505717-8505736 MsG0180000602.01.T01:CDS 50.0%
TCATCCCTGGTCAATCTGCA+TGG - Chr1:8506745-8506764 MsG0180000602.01.T01:intron 50.0%
TCCAACCATGCAGATTGACC+AGG + Chr1:8506753-8506772 None:intergenic 50.0%
TGCAGAGGAGTAACCGATGT+TGG - Chr1:8506244-8506263 MsG0180000602.01.T01:CDS 50.0%
TGGGATCAAGGATCTGGACT+TGG - Chr1:8506485-8506504 MsG0180000602.01.T01:intron 50.0%
TTAGGGAAGCTTGCAATCCG+TGG - Chr1:8505663-8505682 MsG0180000602.01.T01:CDS 50.0%
! AACATCGGTTACTCCTCTGC+AGG + Chr1:8506245-8506264 None:intergenic 50.0%
! ACACGTGATCTCTTCTGAGG+TGG + Chr1:8505299-8505318 None:intergenic 50.0%
! CAGAAGCATAAGCCAGCGTT+TGG + Chr1:8505462-8505481 None:intergenic 50.0%
! GGTTGCCTGTTGGTGAAGAA+AGG - Chr1:8505417-8505436 MsG0180000602.01.T01:intron 50.0%
!! CTGCTTTGGGATCAAGGATC+TGG - Chr1:8506479-8506498 MsG0180000602.01.T01:intron 50.0%
!! TGAGAGAGGCTCTGGGTTAT+GGG - Chr1:8506175-8506194 MsG0180000602.01.T01:CDS 50.0%
AGGGTAGCGTTGCCAAATCC+AGG + Chr1:8506566-8506585 None:intergenic 55.0%
CAACTTGAGGGCCAAGAGAC+AGG + Chr1:8505265-8505284 None:intergenic 55.0%
CCCTGGTCAATCTGCATGGT+TGG - Chr1:8506749-8506768 MsG0180000602.01.T01:CDS 55.0%
CGTGGAAGCAACTCAGAACG+CGG - Chr1:8505681-8505700 MsG0180000602.01.T01:CDS 55.0%
GCAGTTGGAACTGCATCACG+AGG - Chr1:8505636-8505655 MsG0180000602.01.T01:CDS 55.0%
GGGTAGCGTTGCCAAATCCA+GGG + Chr1:8506565-8506584 None:intergenic 55.0%
GTTGGAACTGCATCACGAGG+AGG - Chr1:8505639-8505658 MsG0180000602.01.T01:CDS 55.0%
GTTGGGGATCAAGGAATCGC+TGG - Chr1:8506015-8506034 MsG0180000602.01.T01:CDS 55.0%
TCCATTGCTTGAGAGCTCCG+AGG - Chr1:8506666-8506685 MsG0180000602.01.T01:intron 55.0%
! ATCAAGGACTGTGCCGGTGT+TGG - Chr1:8505997-8506016 MsG0180000602.01.T01:intron 55.0%
! CGCGTTCTGAGTTGCTTCCA+CGG + Chr1:8505683-8505702 None:intergenic 55.0%
! TCAAGGACTGTGCCGGTGTT+GGG - Chr1:8505998-8506017 MsG0180000602.01.T01:intron 55.0%
!! GGTGAGCTGCTTTGGGATCA+AGG - Chr1:8506473-8506492 MsG0180000602.01.T01:CDS 55.0%
!! GTGAGAGAGGCTCTGGGTTA+TGG - Chr1:8506174-8506193 MsG0180000602.01.T01:CDS 55.0%
GAACGCGGCGTGACAACTCT+AGG - Chr1:8505696-8505715 MsG0180000602.01.T01:CDS 60.0%
GCCTCGGAGCTCTCAAGCAA+TGG + Chr1:8506670-8506689 None:intergenic 60.0%
TTGCTTGAGAGCTCCGAGGC+TGG - Chr1:8506670-8506689 MsG0180000602.01.T01:intron 60.0%
! CAAGGACTGTGCCGGTGTTG+GGG - Chr1:8505999-8506018 MsG0180000602.01.T01:intron 60.0%
! TGTGCCGGTGTTGGGGATCA+AGG - Chr1:8506006-8506025 MsG0180000602.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 8504805 8506825 8504805 ID=MsG0180000602.01;Name=MsG0180000602.01
Chr1 mRNA 8504805 8506825 8504805 ID=MsG0180000602.01.T01;Parent=MsG0180000602.01;Name=MsG0180000602.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|0.75|1|1|4|0|329
Chr1 exon 8506749 8506825 8506749 ID=MsG0180000602.01.T01:exon:2373;Parent=MsG0180000602.01.T01
Chr1 exon 8506013 8506494 8506013 ID=MsG0180000602.01.T01:exon:2374;Parent=MsG0180000602.01.T01
Chr1 exon 8505618 8505835 8505618 ID=MsG0180000602.01.T01:exon:2375;Parent=MsG0180000602.01.T01
Chr1 exon 8504805 8505017 8504805 ID=MsG0180000602.01.T01:exon:2376;Parent=MsG0180000602.01.T01
Chr1 CDS 8506749 8506825 8506749 ID=MsG0180000602.01.T01:cds;Parent=MsG0180000602.01.T01
Chr1 CDS 8506013 8506494 8506013 ID=MsG0180000602.01.T01:cds;Parent=MsG0180000602.01.T01
Chr1 CDS 8505618 8505835 8505618 ID=MsG0180000602.01.T01:cds;Parent=MsG0180000602.01.T01
Chr1 CDS 8504805 8505017 8504805 ID=MsG0180000602.01.T01:cds;Parent=MsG0180000602.01.T01
Gene Sequence

>MsG0180000602.01.T01

ATGGGTTTGATCTTAATTCTCTTAATTTGTTATGTGGTATGGATAATCATGTGGTTAAGTGGTGAAATTTCAACTGGACATAGATCATTATGTTTATATGCTCAATTGTTCATTCCTGATGATTTTGCACAATCGTTTATGTTCTCAGGTGATAACTTTTGCCATGGTGGGTTATACACAAACCCCAAGGAAGCAAATTTCTTCCTGTCTCTTGGCCCTCAAGTTGATGTCTACTATCCACCTCAGAAGAGATCACGTGTCAGTGTTCCATTTGTTTTCGATGGAGAATGGTTTGAGCAGAAGCAGAAAACATCTATTGAATCTTTGCCAGATGAGTGCCTCTTTGAGATCTTTAGAAGGTTGCCTGTTGGTGAAGAAAGGAGTGCATCTGCTTGTGTTTCCAAACGCTGGCTTATGCTTCTGAGCAATATTTGCAAGAATGAAATCTGTAGCACAAAAGTACCTCCTCAAATGACGAGAATAAAATGGAAAGTGACTGTGAAGAGTTTGGAGGTGAGGGATACTTTCCCGAAGCTTGGAAGGAAAGAAGGCAACCGATGCCTTATTGAGATCGCTAATGGATGTCAAAAGCTAGAGAAGCTTGACCTTTGCAAATGCCCTGCAATTTCCGACAAGGCTTTAACCGCAGTTGCAAAGAAGTGTCCGAATCTGACCGAGTTATCATTAGAGTCTTGTCTAGCATTCGCAATGAAGGTCTACAAGCCATTGGAAAGTTCTGCCCAAATCTTAAGGTTATATCTATCAAGGACTGTGCCGCTTCAACAAGTTGAATTAACTGGACTTAAGGGAGTCACAGATGCTGGGTTGCTTCCATTGCTTGAGAGCTCCGAGGCTGGTCTTGTTAAAGTTAATCTCAGTGGTTGCATCAATCTTACCGACAAAGTAGTTTCATCCCTGGTCAATCTGCATGGTTGGACTCTCGAAATTCTGAACCTTGAAGGTTGTAAAAATATCATCAATGCTAGCTGA
Protein sequence

>MsG0180000602.01.T01

MGLILILLICYVVWIIMWLSGEISTGHRSLCLYAQLFIPDDFAQSFMFSGDNFCHGGLYTNPKEANFFLSLGPQVDVYYPPQKRSRVSVPFVFDGEWFEQKQKTSIESLPDECLFEIFRRLPVGEERSASACVSKRWLMLLSNICKNEICSTKVPPQMTRIKWKVTVKSLEVRDTFPKLGRKEGNRCLIEIANGCQKLEKLDLCKCPAISDKALTAVAKKCPNLTELSLESCLAFAMKVYKPLESSAQILRLYLSRTVPLQQVELTGLKGVTDAGLLPLLESSEAGLVKVNLSGCINLTDKVVSSLVNLHGWTLEILNLEGCKNIINAS*