AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027219.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027219.01.T01 MTR_0076s0020 88.604 351 3 1 51 364 3 353 0.0 625
MsG0580027219.01.T01 MTR_8g069905 68.876 347 71 1 51 360 5 351 2.63e-173 487
MsG0580027219.01.T01 MTR_7g018310 65.642 358 102 5 20 357 17 373 2.62e-166 470
MsG0580027219.01.T01 MTR_0003s0660 62.005 379 102 6 20 357 17 394 1.85e-160 456
MsG0580027219.01.T01 MTR_7g018320 63.006 346 102 6 20 357 17 344 3.33e-148 423
MsG0580027219.01.T01 MTR_7g018290 62.500 344 90 5 52 357 6 348 3.34e-145 415
MsG0580027219.01.T01 MTR_4g118320 38.012 342 150 8 55 341 5 339 6.25e-62 202
MsG0580027219.01.T01 MTR_2g020990 37.644 348 147 9 55 342 5 342 5.30e-61 200
MsG0580027219.01.T01 MTR_0076s0010 98.000 50 0 1 1 50 1 49 1.85e-23 92.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027219.01.T01 AT3G25570 64.535 344 82 3 51 354 3 346 2.99e-151 430
MsG0580027219.01.T01 AT3G25570 64.535 344 82 3 51 354 3 346 2.99e-151 430
MsG0580027219.01.T01 AT5G15950 57.778 360 106 6 51 364 3 362 1.67e-141 406
MsG0580027219.01.T01 AT5G15950 57.778 360 106 6 51 364 3 362 1.67e-141 406
MsG0580027219.01.T01 AT3G02470 58.046 348 105 5 51 357 3 350 3.23e-139 400
MsG0580027219.01.T01 AT3G02470 58.046 348 105 5 51 357 3 350 3.23e-139 400
MsG0580027219.01.T01 AT3G02470 58.046 348 105 5 51 357 3 350 3.23e-139 400
MsG0580027219.01.T01 AT5G18930 40.118 339 150 6 55 341 5 342 4.76e-70 223
MsG0580027219.01.T01 AT3G17717 49.351 77 38 1 225 300 51 127 8.75e-20 84.7

Find 93 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTCACAGATCTGACTTTA+AGG 0.158308 5:+56442830 None:intergenic
AAGTCACATATTTCAGAATT+TGG 0.203322 5:+56442492 None:intergenic
CAGAGTAAACATGCCAATTC+TGG 0.233926 5:+56442665 None:intergenic
AGGCAGCACGGCTTATATTA+TGG 0.244404 5:-56442704 MsG0580027219.01.T01:CDS
AATCCCACCCATATTGAAAT+TGG 0.267826 5:-56442866 MsG0580027219.01.T01:CDS
CACCCATTCCAAGCCCTTCT+AGG 0.285576 5:+56442196 None:intergenic
TGGGATTGCAAGCAGTAATT+TGG 0.289958 5:+56442882 None:intergenic
CGTGAAGAGAGGAGCCTAGA+AGG 0.310976 5:-56442210 MsG0580027219.01.T01:CDS
GGACTCGGCCAATTTCAATA+TGG 0.320655 5:+56442858 None:intergenic
CAGCAGTCTTGACAAACTTT+TGG 0.352416 5:+56442160 None:intergenic
GGGTTGTTCGCTGGATGTTA+AGG 0.371228 5:-56442241 MsG0580027219.01.T01:CDS
TCTTGTAGGCATAAACAAAA+AGG 0.372256 5:+56442929 None:intergenic
AGATCTGACTTTAAGGGAAA+TGG 0.377918 5:+56442837 None:intergenic
GCCATGTCAGTTTCTGCAAT+TGG 0.378208 5:-56443141 MsG0580027219.01.T01:intron
GCATAACTGAACCCATCTTC+TGG 0.388865 5:+56442399 None:intergenic
GCTGTCCTTGATGGCTACTT+TGG 0.400659 5:-56442739 MsG0580027219.01.T01:CDS
ATCTCTCACAAAATCCCAAC+TGG 0.403145 5:-56443037 MsG0580027219.01.T01:CDS
GATGGCTACTTTGGAAAGCT+TGG 0.406979 5:-56442730 MsG0580027219.01.T01:CDS
CAGCACTTAAGTGTTGATCT+AGG 0.408052 5:+56442126 None:intergenic
ATGGCTACTTTGGAAAGCTT+GGG 0.411273 5:-56442729 MsG0580027219.01.T01:CDS
GAAGAAGTAGCTGTCCTTGA+TGG 0.417679 5:-56442748 MsG0580027219.01.T01:CDS
GGCAGCACGGCTTATATTAT+GGG 0.419414 5:-56442703 MsG0580027219.01.T01:CDS
TACTTTGGAAAGCTTGGGTC+AGG 0.421656 5:-56442724 MsG0580027219.01.T01:CDS
TGCAAGCAAGTCGTTTGAGC+AGG 0.423080 5:-56442262 MsG0580027219.01.T01:CDS
GTGTGTAGACAGAGTCGTTT+GGG 0.432980 5:+56442623 None:intergenic
GATCCGATGAAGCCCAGAAT+TGG 0.434903 5:-56442678 MsG0580027219.01.T01:CDS
GGTTGTTCGCTGGATGTTAA+GGG 0.435015 5:-56442240 MsG0580027219.01.T01:CDS
CCTCACAGATCTGACTTTAA+GGG 0.436074 5:+56442831 None:intergenic
TGAAGGATTTGAAAAGAGGT+TGG 0.442885 5:-56443115 MsG0580027219.01.T01:CDS
ATTCATGTTACTCCAGAAGA+TGG 0.452259 5:-56442411 MsG0580027219.01.T01:CDS
ACAGCTACAGAAAACTCATT+TGG 0.455280 5:+56442297 None:intergenic
GTTTGAGCAGGGTTGTTCGC+TGG 0.461205 5:-56442250 MsG0580027219.01.T01:CDS
GAGAGGAGCCTAGAAGGGCT+TGG 0.469686 5:-56442204 MsG0580027219.01.T01:CDS
GACAGAGTCGTTTGGGCTCA+CGG 0.470139 5:+56442630 None:intergenic
AGCAATGAATCTGAATGAAT+TGG 0.470356 5:-56442346 MsG0580027219.01.T01:CDS
AGTGGCGATGAGGGAAAGAC+TGG 0.471304 5:+56442776 None:intergenic
CAGTAATTTGGTAGTACCAC+AGG 0.471609 5:+56442894 None:intergenic
AGCCTAGAAGGGCTTGGAAT+GGG 0.471610 5:-56442198 MsG0580027219.01.T01:CDS
GACTCGGCCAATTTCAATAT+GGG 0.472381 5:+56442859 None:intergenic
TATGCAAGCTTTGAGACTGC+TGG 0.481178 5:-56442381 MsG0580027219.01.T01:CDS
AGAGTAAACATGCCAATTCT+GGG 0.482441 5:+56442666 None:intergenic
ATCAAGGACAGCTACTTCTT+CGG 0.483365 5:+56442750 None:intergenic
AGTGTGTAGACAGAGTCGTT+TGG 0.483944 5:+56442622 None:intergenic
GAAACAATGGTGCACTCAGC+TGG 0.491991 5:+56443000 None:intergenic
CTACAGAAAACTCATTTGGT+TGG 0.492466 5:+56442301 None:intergenic
GACTTTAAGGGAAATGGACT+CGG 0.492549 5:+56442843 None:intergenic
TGACGATTTACTACTACTAC+TGG 0.495409 5:+56443578 None:intergenic
TGAGGGAAAGACTGGGCACC+AGG 0.502643 5:+56442784 None:intergenic
CAGCTACTTCTTCGGAAAAG+TGG 0.518616 5:+56442758 None:intergenic
TGCAAGAATCTCATCCAGTT+GGG 0.520638 5:+56443023 None:intergenic
AACTTCTTGATTCCACCGTT+AGG 0.527282 5:+56443504 None:intergenic
TATTCAATGAATTCTGTTGA+GGG 0.527553 5:-56442450 MsG0580027219.01.T01:CDS
CTAGATCAACACTTAAGTGC+TGG 0.535337 5:-56442125 MsG0580027219.01.T01:CDS
GTGCAAGAATCTCATCCAGT+TGG 0.545202 5:+56443022 None:intergenic
CTTCGGAAAAGTGGCGATGA+GGG 0.545675 5:+56442767 None:intergenic
ATCTTAAACCCCTCCCGTGA+GGG 0.547240 5:+56443058 None:intergenic
ATGCCAATTCTGGGCTTCAT+CGG 0.548303 5:+56442675 None:intergenic
GCTTTCCAAAGTAGCCATCA+AGG 0.551420 5:+56442734 None:intergenic
GTCTTCAATGCTGTATCCGA+GGG 0.553166 5:+56443533 None:intergenic
ATCTTCTGGAGTAACATGAA+TGG 0.557011 5:+56442413 None:intergenic
GAGCCTAGAAGGGCTTGGAA+TGG 0.557133 5:-56442199 MsG0580027219.01.T01:CDS
AATGAATCTGAATGAATTGG+TGG 0.561345 5:-56442343 MsG0580027219.01.T01:CDS
GTCAACATCGTCATTTGCTA+AGG 0.561466 5:+56442975 None:intergenic
TTCATGTTACTCCAGAAGAT+GGG 0.561810 5:-56442410 MsG0580027219.01.T01:CDS
TTATTCAATGAATTCTGTTG+AGG 0.563786 5:-56442451 MsG0580027219.01.T01:CDS
AATGAGCTAATGGAGTCTAA+AGG 0.565907 5:-56443615 None:intergenic
CGGCCAATTTCAATATGGGT+GGG 0.578309 5:+56442863 None:intergenic
GTGAAGAGAGGAGCCTAGAA+GGG 0.583585 5:-56442209 MsG0580027219.01.T01:CDS
CTAGAAGGGCTTGGAATGGG+TGG 0.585068 5:-56442195 MsG0580027219.01.T01:CDS
GCAAGCAAGTCGTTTGAGCA+GGG 0.585251 5:-56442261 MsG0580027219.01.T01:CDS
ATTGAAGACATTCGTCCTAA+CGG 0.595565 5:-56443519 MsG0580027219.01.T01:CDS
TCGGCCAATTTCAATATGGG+TGG 0.595661 5:+56442862 None:intergenic
AAAGCTTGGGTCAGGCAGCA+CGG 0.596517 5:-56442716 MsG0580027219.01.T01:CDS
TGTCTTCAATGCTGTATCCG+AGG 0.610451 5:+56443532 None:intergenic
TCTGAATGAATTGGTGGTGA+AGG 0.612452 5:-56442337 MsG0580027219.01.T01:CDS
AGGGATACTGTCGTGAAGAG+AGG 0.619171 5:-56442221 MsG0580027219.01.T01:CDS
TCTTCGGAAAAGTGGCGATG+AGG 0.619318 5:+56442766 None:intergenic
TTATTCTACGAAGCTCCCCT+CGG 0.625181 5:-56443549 MsG0580027219.01.T01:CDS
GAGCTAATGGAGTCTAAAGG+AGG 0.647473 5:-56443612 None:intergenic
TGGGCTCACGGAATCTGCAG+AGG 0.650938 5:+56442642 None:intergenic
ATTTGCTAAGGAAGAAACAA+TGG 0.659529 5:+56442987 None:intergenic
GCTGGACTCAGACAGAACAT+AGG 0.663634 5:+56442951 None:intergenic
AGCACGGCTTATATTATGGG+TGG 0.666611 5:-56442700 MsG0580027219.01.T01:CDS
GATCTTAAACCCCTCCCGTG+AGG 0.672665 5:+56443057 None:intergenic
GTGGCGATGAGGGAAAGACT+GGG 0.690654 5:+56442777 None:intergenic
CCCTTAAAGTCAGATCTGTG+AGG 0.691736 5:-56442831 MsG0580027219.01.T01:CDS
AAGATCATAATCAAAACCTG+TGG 0.691808 5:-56442910 MsG0580027219.01.T01:CDS
GAAGACATTCGTCCTAACGG+TGG 0.692317 5:-56443516 MsG0580027219.01.T01:CDS
TTTGTCAAGACTGCTGACTG+TGG 0.698640 5:-56442153 MsG0580027219.01.T01:CDS
GAATTCATTGAATAACCACA+AGG 0.720077 5:+56442459 None:intergenic
AGGTGAATGAACACTCACGT+TGG 0.738781 5:+56443464 None:intergenic
AGATCTGTGAGGTACACCCG+AGG 0.738828 5:-56442820 MsG0580027219.01.T01:CDS
TCTTCAATGCTGTATCCGAG+GGG 0.754164 5:+56443534 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CCAAAATACATATATTATCA+AGG + Chr5:56442266-56442285 None:intergenic 20.0%
!! GAGTTTGGAAAAAAAAAAAT+AGG + Chr5:56442339-56442358 None:intergenic 20.0%
!!! AGCTTTTTTTGTTTTTGTTT+AGG - Chr5:56442435-56442454 MsG0580027219.01.T01:CDS 20.0%
!!! CCTTGATAATATATGTATTT+TGG - Chr5:56442263-56442282 MsG0580027219.01.T01:CDS 20.0%
! AAGTCACATATTTCAGAATT+TGG + Chr5:56443218-56443237 None:intergenic 25.0%
! TATTCAATGAATTCTGTTGA+GGG - Chr5:56443257-56443276 MsG0580027219.01.T01:intron 25.0%
! TTATTCAATGAATTCTGTTG+AGG - Chr5:56443256-56443275 MsG0580027219.01.T01:intron 25.0%
!!! TTTGGAAAGATGTATTTTGA+AGG + Chr5:56442476-56442495 None:intergenic 25.0%
AAGATCATAATCAAAACCTG+TGG - Chr5:56442797-56442816 MsG0580027219.01.T01:CDS 30.0%
AATGAATCTGAATGAATTGG+TGG - Chr5:56443364-56443383 MsG0580027219.01.T01:intron 30.0%
AGCAATGAATCTGAATGAAT+TGG - Chr5:56443361-56443380 MsG0580027219.01.T01:intron 30.0%
GAATTCATTGAATAACCACA+AGG + Chr5:56443251-56443270 None:intergenic 30.0%
TCTTGTAGGCATAAACAAAA+AGG + Chr5:56442781-56442800 None:intergenic 30.0%
! ATTTGCTAAGGAAGAAACAA+TGG + Chr5:56442723-56442742 None:intergenic 30.0%
!!! GGTTTTGATTATGATCTTGT+AGG + Chr5:56442795-56442814 None:intergenic 30.0%
!!! GTTTTGAAGGATTTGAAAAG+AGG - Chr5:56442588-56442607 MsG0580027219.01.T01:intron 30.0%
AAAGACACACAGAAGAAACA+AGG + Chr5:56442532-56442551 None:intergenic 35.0%
AATCCCACCCATATTGAAAT+TGG - Chr5:56442841-56442860 MsG0580027219.01.T01:CDS 35.0%
ACAGCTACAGAAAACTCATT+TGG + Chr5:56443413-56443432 None:intergenic 35.0%
AGAGTAAACATGCCAATTCT+GGG + Chr5:56443044-56443063 None:intergenic 35.0%
ATAAAAAACTGCTTGCATGC+AGG + Chr5:56442414-56442433 None:intergenic 35.0%
ATCAGTATGGAATATCAGGA+TGG + Chr5:56442382-56442401 None:intergenic 35.0%
ATTCATGTTACTCCAGAAGA+TGG - Chr5:56443296-56443315 MsG0580027219.01.T01:intron 35.0%
ATTGAAGACATTCGTCCTAA+CGG - Chr5:56442188-56442207 MsG0580027219.01.T01:CDS 35.0%
CTACAGAAAACTCATTTGGT+TGG + Chr5:56443409-56443428 None:intergenic 35.0%
GAGAATCAGTATGGAATATC+AGG + Chr5:56442386-56442405 None:intergenic 35.0%
TAAAAAACTGCTTGCATGCA+GGG + Chr5:56442413-56442432 None:intergenic 35.0%
TGAAGGATTTGAAAAGAGGT+TGG - Chr5:56442592-56442611 MsG0580027219.01.T01:intron 35.0%
TGACGATTTACTACTACTAC+TGG + Chr5:56442132-56442151 None:intergenic 35.0%
TTCATGTTACTCCAGAAGAT+GGG - Chr5:56443297-56443316 MsG0580027219.01.T01:intron 35.0%
! AGATCTGACTTTAAGGGAAA+TGG + Chr5:56442873-56442892 None:intergenic 35.0%
!! ATCTTCTGGAGTAACATGAA+TGG + Chr5:56443297-56443316 None:intergenic 35.0%
!! GACTTTGATTTTGAACCTTG+TGG - Chr5:56443233-56443252 MsG0580027219.01.T01:intron 35.0%
!!! GTTTCTGCAATTGGTTTTGA+AGG - Chr5:56442575-56442594 MsG0580027219.01.T01:intron 35.0%
AAAAAACTGCTTGCATGCAG+GGG + Chr5:56442412-56442431 None:intergenic 40.0%
AACTTCTTGATTCCACCGTT+AGG + Chr5:56442206-56442225 None:intergenic 40.0%
ACCAATTGCAGAAACTGACA+TGG + Chr5:56442570-56442589 None:intergenic 40.0%
ACCTCACAGATCTGACTTTA+AGG + Chr5:56442880-56442899 None:intergenic 40.0%
AGAGTACAATCGCAAAGAGA+GGG + Chr5:56442499-56442518 None:intergenic 40.0%
AGGAAAAATGAAACTGCCTC+GGG + Chr5:56442906-56442925 None:intergenic 40.0%
ATCAAGGACAGCTACTTCTT+CGG + Chr5:56442960-56442979 None:intergenic 40.0%
ATCTCTCACAAAATCCCAAC+TGG - Chr5:56442670-56442689 MsG0580027219.01.T01:CDS 40.0%
ATGCTTTCTCTCTGTCTAAG+CGG + Chr5:56443125-56443144 None:intergenic 40.0%
CAGAGTAAACATGCCAATTC+TGG + Chr5:56443045-56443064 None:intergenic 40.0%
CAGGAAAAATGAAACTGCCT+CGG + Chr5:56442907-56442926 None:intergenic 40.0%
CCTCACAGATCTGACTTTAA+GGG + Chr5:56442879-56442898 None:intergenic 40.0%
CTAGATCAACACTTAAGTGC+TGG - Chr5:56443582-56443601 MsG0580027219.01.T01:CDS 40.0%
GACTCGGCCAATTTCAATAT+GGG + Chr5:56442851-56442870 None:intergenic 40.0%
GTAGGCATAAACAAAAAGGC+TGG + Chr5:56442777-56442796 None:intergenic 40.0%
GTGTCTTTCTGTTTGAACTG+TGG - Chr5:56442544-56442563 MsG0580027219.01.T01:intron 40.0%
TGCAAGAATCTCATCCAGTT+GGG + Chr5:56442687-56442706 None:intergenic 40.0%
TGGGATTGCAAGCAGTAATT+TGG + Chr5:56442828-56442847 None:intergenic 40.0%
! AAGAGTACAATCGCAAAGAG+AGG + Chr5:56442500-56442519 None:intergenic 40.0%
! ATGGCTACTTTGGAAAGCTT+GGG - Chr5:56442978-56442997 MsG0580027219.01.T01:CDS 40.0%
! CAGCAGTCTTGACAAACTTT+TGG + Chr5:56443550-56443569 None:intergenic 40.0%
! CAGTAATTTGGTAGTACCAC+AGG + Chr5:56442816-56442835 None:intergenic 40.0%
! CTTAGACAGAGAGAAAGCAT+TGG - Chr5:56443125-56443144 MsG0580027219.01.T01:CDS 40.0%
! GACTTTAAGGGAAATGGACT+CGG + Chr5:56442867-56442886 None:intergenic 40.0%
! GTCAACATCGTCATTTGCTA+AGG + Chr5:56442735-56442754 None:intergenic 40.0%
! GTTTTCTGTAGCTGTTCATG+TGG - Chr5:56443418-56443437 MsG0580027219.01.T01:intron 40.0%
!! CAGCACTTAAGTGTTGATCT+AGG + Chr5:56443584-56443603 None:intergenic 40.0%
!! TCTGAATGAATTGGTGGTGA+AGG - Chr5:56443370-56443389 MsG0580027219.01.T01:intron 40.0%
AAAAAGTCCAGGGTCGGAAA+AGG + Chr5:56442624-56442643 None:intergenic 45.0%
ACAATCGCAAAGAGAGGGTT+TGG + Chr5:56442494-56442513 None:intergenic 45.0%
AGCACGGCTTATATTATGGG+TGG - Chr5:56443007-56443026 MsG0580027219.01.T01:CDS 45.0%
AGGCAGCACGGCTTATATTA+TGG - Chr5:56443003-56443022 MsG0580027219.01.T01:CDS 45.0%
AGGTGAATGAACACTCACGT+TGG + Chr5:56442246-56442265 None:intergenic 45.0%
AGTGTGTAGACAGAGTCGTT+TGG + Chr5:56443088-56443107 None:intergenic 45.0%
ATGCCAATTCTGGGCTTCAT+CGG + Chr5:56443035-56443054 None:intergenic 45.0%
CAGCTACTTCTTCGGAAAAG+TGG + Chr5:56442952-56442971 None:intergenic 45.0%
CCCTTAAAGTCAGATCTGTG+AGG - Chr5:56442876-56442895 MsG0580027219.01.T01:CDS 45.0%
CGGCCAATTTCAATATGGGT+GGG + Chr5:56442847-56442866 None:intergenic 45.0%
GAAGAAGTAGCTGTCCTTGA+TGG - Chr5:56442959-56442978 MsG0580027219.01.T01:CDS 45.0%
GAGGGTCAGAAAAAAGTCCA+GGG + Chr5:56442634-56442653 None:intergenic 45.0%
GCATAACTGAACCCATCTTC+TGG + Chr5:56443311-56443330 None:intergenic 45.0%
GCCATGTCAGTTTCTGCAAT+TGG - Chr5:56442566-56442585 MsG0580027219.01.T01:intron 45.0%
GCTTTCCAAAGTAGCCATCA+AGG + Chr5:56442976-56442995 None:intergenic 45.0%
GGACTCGGCCAATTTCAATA+TGG + Chr5:56442852-56442871 None:intergenic 45.0%
GGCAGCACGGCTTATATTAT+GGG - Chr5:56443004-56443023 MsG0580027219.01.T01:CDS 45.0%
GGTTGTTCGCTGGATGTTAA+GGG - Chr5:56443467-56443486 MsG0580027219.01.T01:intron 45.0%
GTCAGAAAAAAGTCCAGGGT+CGG + Chr5:56442630-56442649 None:intergenic 45.0%
GTCTTCAATGCTGTATCCGA+GGG + Chr5:56442177-56442196 None:intergenic 45.0%
GTGCAAGAATCTCATCCAGT+TGG + Chr5:56442688-56442707 None:intergenic 45.0%
GTGTGTAGACAGAGTCGTTT+GGG + Chr5:56443087-56443106 None:intergenic 45.0%
TCGGCCAATTTCAATATGGG+TGG + Chr5:56442848-56442867 None:intergenic 45.0%
TCTTCAATGCTGTATCCGAG+GGG + Chr5:56442176-56442195 None:intergenic 45.0%
TGAGGGTCAGAAAAAAGTCC+AGG + Chr5:56442635-56442654 None:intergenic 45.0%
TGTCTTCAATGCTGTATCCG+AGG + Chr5:56442178-56442197 None:intergenic 45.0%
TTATTCTACGAAGCTCCCCT+CGG - Chr5:56442158-56442177 MsG0580027219.01.T01:CDS 45.0%
TTTCCTGATGCCAGAGTTCA+CGG + Chr5:56443190-56443209 None:intergenic 45.0%
! GAAATTTCCTTTTCCGACCC+TGG - Chr5:56442614-56442633 MsG0580027219.01.T01:intron 45.0%
! GATGGCTACTTTGGAAAGCT+TGG - Chr5:56442977-56442996 MsG0580027219.01.T01:CDS 45.0%
! TACTTTGGAAAGCTTGGGTC+AGG - Chr5:56442983-56443002 MsG0580027219.01.T01:CDS 45.0%
! TTTGTCAAGACTGCTGACTG+TGG - Chr5:56443554-56443573 MsG0580027219.01.T01:CDS 45.0%
!! CGAGGCAGTTTCATTTTTCC+TGG - Chr5:56442905-56442924 MsG0580027219.01.T01:CDS 45.0%
!! TATGCAAGCTTTGAGACTGC+TGG - Chr5:56443326-56443345 MsG0580027219.01.T01:intron 45.0%
!!! GACTTTTTTCTGACCCTCAC+GGG - Chr5:56442636-56442655 MsG0580027219.01.T01:CDS 45.0%
!!! GGACTTTTTTCTGACCCTCA+CGG - Chr5:56442635-56442654 MsG0580027219.01.T01:CDS 45.0%
AGCCTAGAAGGGCTTGGAAT+GGG - Chr5:56443509-56443528 MsG0580027219.01.T01:CDS 50.0%
AGGGATACTGTCGTGAAGAG+AGG - Chr5:56443486-56443505 MsG0580027219.01.T01:CDS 50.0%
ATCTTAAACCCCTCCCGTGA+GGG + Chr5:56442652-56442671 None:intergenic 50.0%
CAGGGGAACGAGAATCAGTA+TGG + Chr5:56442395-56442414 None:intergenic 50.0%
CTTCGGAAAAGTGGCGATGA+GGG + Chr5:56442943-56442962 None:intergenic 50.0%
GAAACAATGGTGCACTCAGC+TGG + Chr5:56442710-56442729 None:intergenic 50.0%
GAAGACATTCGTCCTAACGG+TGG - Chr5:56442191-56442210 MsG0580027219.01.T01:CDS 50.0%
GATCCGATGAAGCCCAGAAT+TGG - Chr5:56443029-56443048 MsG0580027219.01.T01:CDS 50.0%
GCAAGCAAGTCGTTTGAGCA+GGG - Chr5:56443446-56443465 MsG0580027219.01.T01:intron 50.0%
GCTGGACTCAGACAGAACAT+AGG + Chr5:56442759-56442778 None:intergenic 50.0%
GGGTTGTTCGCTGGATGTTA+AGG - Chr5:56443466-56443485 MsG0580027219.01.T01:intron 50.0%
GTGAAGAGAGGAGCCTAGAA+GGG - Chr5:56443498-56443517 MsG0580027219.01.T01:CDS 50.0%
TCTTCGGAAAAGTGGCGATG+AGG + Chr5:56442944-56442963 None:intergenic 50.0%
TGCAAGCAAGTCGTTTGAGC+AGG - Chr5:56443445-56443464 MsG0580027219.01.T01:intron 50.0%
! GCTGTCCTTGATGGCTACTT+TGG - Chr5:56442968-56442987 MsG0580027219.01.T01:CDS 50.0%
! TTTTTCTGACCCTCACGGGA+GGG - Chr5:56442640-56442659 MsG0580027219.01.T01:CDS 50.0%
!!! TTTTTTCTGACCCTCACGGG+AGG - Chr5:56442639-56442658 MsG0580027219.01.T01:CDS 50.0%
AAAGCTTGGGTCAGGCAGCA+CGG - Chr5:56442991-56443010 MsG0580027219.01.T01:CDS 55.0%
AGATCTGTGAGGTACACCCG+AGG - Chr5:56442887-56442906 MsG0580027219.01.T01:CDS 55.0%
AGTGGCGATGAGGGAAAGAC+TGG + Chr5:56442934-56442953 None:intergenic 55.0%
CACCCATTCCAAGCCCTTCT+AGG + Chr5:56443514-56443533 None:intergenic 55.0%
CGTGAAGAGAGGAGCCTAGA+AGG - Chr5:56443497-56443516 MsG0580027219.01.T01:CDS 55.0%
CTAGAAGGGCTTGGAATGGG+TGG - Chr5:56443512-56443531 MsG0580027219.01.T01:CDS 55.0%
GACAGAGTCGTTTGGGCTCA+CGG + Chr5:56443080-56443099 None:intergenic 55.0%
GAGCCTAGAAGGGCTTGGAA+TGG - Chr5:56443508-56443527 MsG0580027219.01.T01:CDS 55.0%
GAGCGCACTGCACAAGAGTT+TGG + Chr5:56442354-56442373 None:intergenic 55.0%
GATCTTAAACCCCTCCCGTG+AGG + Chr5:56442653-56442672 None:intergenic 55.0%
GCCAAGATGACCGTGAACTC+TGG - Chr5:56443177-56443196 MsG0580027219.01.T01:intron 55.0%
GCCAGAGTTCACGGTCATCT+TGG + Chr5:56443181-56443200 None:intergenic 55.0%
GTGGCGATGAGGGAAAGACT+GGG + Chr5:56442933-56442952 None:intergenic 55.0%
GTTTGAGCAGGGTTGTTCGC+TGG - Chr5:56443457-56443476 MsG0580027219.01.T01:intron 55.0%
TGACCGTGAACTCTGGCATC+AGG - Chr5:56443184-56443203 MsG0580027219.01.T01:intron 55.0%
! TTTTCTGACCCTCACGGGAG+GGG - Chr5:56442641-56442660 MsG0580027219.01.T01:CDS 55.0%
GAGAGGAGCCTAGAAGGGCT+TGG - Chr5:56443503-56443522 MsG0580027219.01.T01:CDS 60.0%
TGAGGGAAAGACTGGGCACC+AGG + Chr5:56442926-56442945 None:intergenic 60.0%
TGGGCTCACGGAATCTGCAG+AGG + Chr5:56443068-56443087 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 56442101 56443628 56442101 ID=MsG0580027219.01;Name=MsG0580027219.01
Chr5 mRNA 56442101 56443628 56442101 ID=MsG0580027219.01.T01;Parent=MsG0580027219.01;Name=MsG0580027219.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|3|0|364
Chr5 exon 56443478 56443628 56443478 ID=MsG0580027219.01.T01:exon:12676;Parent=MsG0580027219.01.T01
Chr5 exon 56442633 56443153 56442633 ID=MsG0580027219.01.T01:exon:12675;Parent=MsG0580027219.01.T01
Chr5 exon 56442101 56442523 56442101 ID=MsG0580027219.01.T01:exon:12674;Parent=MsG0580027219.01.T01
Chr5 CDS 56443478 56443628 56443478 ID=MsG0580027219.01.T01:cds;Parent=MsG0580027219.01.T01
Chr5 CDS 56442633 56443153 56442633 ID=MsG0580027219.01.T01:cds;Parent=MsG0580027219.01.T01
Chr5 CDS 56442101 56442523 56442101 ID=MsG0580027219.01.T01:cds;Parent=MsG0580027219.01.T01
Gene Sequence

>MsG0580027219.01.T01

ATGGAGTCTAAAGGAGGTAAAAAGAAGTCCAGTAGTAGTAGTAAATCGTCATCATCATTATTCTACGAAGCTCCCCTCGGATACAGCATTGAAGACATTCGTCCTAACGGTGGAATCAAGAAGTTCAGATCAGCTGCTTACTCCAACGTGATTTCTGCAATTGGTTTTGAAGGATTTGAAAAGAGGTTGGAAATTTCCTTTTCCGACCCTGGACTTTTTTCTGACCCTCACGGGAGGGGTTTAAGATCTCTCACAAAATCCCAACTGGATGAGATTCTTGCACCAGCTGAGTGCACCATTGTTTCTTCCTTAGCAAATGACGATGTTGACTCCTATGTTCTGTCTGAGTCCAGCCTTTTTGTTTATGCCTACAAGATCATAATCAAAACCTGTGGTACTACCAAATTACTGCTTGCAATCCCACCCATATTGAAATTGGCCGAGTCCATTTCCCTTAAAGTCAGATCTGTGAGGTACACCCGAGGCAGTTTCATTTTTCCTGGTGCCCAGTCTTTCCCTCATCGCCACTTTTCCGAAGAAGTAGCTGTCCTTGATGGCTACTTTGGAAAGCTTGGGTCAGGCAGCACGGCTTATATTATGGGTGGATCCGATGAAGCCCAGAATTGGCATGTTTACTCTGCCTCTGCAGATTCCGTGAGCCCAAACGACTCTGAAATTCTTCCAAATTCTGAAATATGTGACTTTGATTTTGAACCTTGTGGTTATTCAATGAATTCTGTTGAGGGTGCTGCTGTTTCTACCATTCATGTTACTCCAGAAGATGGGTTCAGTTATGCAAGCTTTGAGACTGCTGGATATGATTTGAAAGCAATGAATCTGAATGAATTGGTGGTGAAGGTGCTAGCTTGTTTCCAACCAAATGAGTTTTCTGTAGCTGTTCATGTGGACAATGCAAGCAAGTCGTTTGAGCAGGGTTGTTCGCTGGATGTTAAGGGATACTGTCGTGAAGAGAGGAGCCTAGAAGGGCTTGGAATGGGTGGTTCTGTTGTCTACCAAAAGTTTGTCAAGACTGCTGACTGTGGCTCGCCTAGATCAACACTTAAGTGCTGGAAAGATGAAGATGAAGAAGAGTAG
Protein sequence

>MsG0580027219.01.T01

MESKGGKKKSSSSSKSSSSLFYEAPLGYSIEDIRPNGGIKKFRSAAYSNVISAIGFEGFEKRLEISFSDPGLFSDPHGRGLRSLTKSQLDEILAPAECTIVSSLANDDVDSYVLSESSLFVYAYKIIIKTCGTTKLLLAIPPILKLAESISLKVRSVRYTRGSFIFPGAQSFPHRHFSEEVAVLDGYFGKLGSGSTAYIMGGSDEAQNWHVYSASADSVSPNDSEILPNSEICDFDFEPCGYSMNSVEGAAVSTIHVTPEDGFSYASFETAGYDLKAMNLNELVVKVLACFQPNEFSVAVHVDNASKSFEQGCSLDVKGYCREERSLEGLGMGGSVVYQKFVKTADCGSPRSTLKCWKDEDEEE*