AlfalfaGEDB | MsG0880046823.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046823.01

KEGG: K20043
GO: GO:0005543 GO:0005545 GO:0030136 GO:0030276 GO:0048268
PFAM: PF07651

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046823.01.T01	XP_003609412.1	98.031	457	2	1	260	709	1	457	0	919

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046823.01.T01	Q9LHS0	72.124	452	110	7	268	708	11	457	0	655

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047992.01	MsG0880046823.01	0.805088	1.580548e-49	8.287022e-47
MsG0180000602.01	MsG0880046823.01	0.836483	9.111704e-57	1.149800e-53
MsG0180003637.01	MsG0880046823.01	0.859569	3.776845e-63	1.001866e-59
MsG0180003763.01	MsG0880046823.01	0.831825	1.340336e-55	1.471446e-52
MsG0180004525.01	MsG0880046823.01	0.815129	1.082655e-51	7.401139e-49
MsG0180004916.01	MsG0880046823.01	0.825928	3.587208e-54	3.315779e-51
MsG0180005814.01	MsG0880046823.01	0.846476	2.120765e-59	3.655138e-56
MsG0180006034.01	MsG0880046823.01	0.807691	4.466659e-50	2.504192e-47
MsG0280007207.01	MsG0880046823.01	0.800948	1.134251e-48	5.350347e-46
MsG0280010468.01	MsG0880046823.01	0.814939	1.193158e-51	8.114623e-49

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046823.01.T01	MTR_4g115420	98.031	457	2	1	260	709	1	457	0.0	919
MsG0880046823.01.T01	MTR_4g127440	49.156	474	206	10	263	703	2	473	3.61e-137	416
MsG0880046823.01.T01	MTR_2g037980	62.025	316	100	3	263	559	2	316	1.51e-132	404
MsG0880046823.01.T01	MTR_0530s0020	44.643	448	201	10	268	693	1	423	1.65e-117	363
MsG0880046823.01.T01	MTR_2g008170	32.653	490	255	11	266	690	4	483	8.19e-62	218
MsG0880046823.01.T01	MTR_8g008860	30.533	488	266	13	264	691	2	476	6.60e-59	209
MsG0880046823.01.T01	MTR_4g114960	29.424	486	280	12	266	698	4	479	2.76e-58	208
MsG0880046823.01.T01	MTR_3g080490	34.106	302	181	4	268	552	5	305	1.59e-55	205
MsG0880046823.01.T01	MTR_7g106410	84.000	75	12	0	1	75	1	75	1.10e-36	132
MsG0880046823.01.T01	MTR_3g106900	44.737	152	78	2	264	409	2	153	1.27e-34	140

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046823.01.T01	AT5G35200	72.124	452	110	7	268	708	11	457	0.0	655
MsG0880046823.01.T01	AT5G35200	72.124	452	110	7	268	708	11	457	0.0	655
MsG0880046823.01.T01	AT4G25940	50.996	502	176	10	263	703	2	494	2.59e-150	450
MsG0880046823.01.T01	AT1G14910	51.120	491	196	10	263	713	2	488	9.14e-150	452
MsG0880046823.01.T01	AT2G01600	51.653	484	177	9	263	703	2	471	1.56e-147	442
MsG0880046823.01.T01	AT1G14910	50.305	491	195	11	263	713	2	483	2.78e-144	438
MsG0880046823.01.T01	AT5G57200	63.091	317	98	3	263	561	2	317	1.87e-135	412
MsG0880046823.01.T01	AT1G03050	33.128	486	250	14	268	690	6	479	3.27e-66	230
MsG0880046823.01.T01	AT4G02650	29.522	481	278	8	268	690	6	483	8.78e-57	204
MsG0880046823.01.T01	AT4G32285	28.876	516	285	7	267	702	4	517	5.07e-55	199

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Find 181 sgRNAs with CRISPR-Local

Find 661 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACTTGGAGCTCTTA+AGG	0.379703	8:-78762078	MsG0880046823.01.T01:CDS
AAAATGCTAGCTATAATCCA+TGG	0.481886	8:-78757479	MsG0880046823.01.T01:CDS
AAAGATGACTCGAGTCCAAA+TGG	0.496856	8:-78760768	MsG0880046823.01.T01:intron
AAATGCTAGCTATAATCCAT+GGG	0.626464	8:-78757478	MsG0880046823.01.T01:CDS
AACAAATCTGTCTCAACAAG+TGG	0.503835	8:+78766236	None:intergenic
AACAGTCAAGTCCGGAATCA+CGG	0.536625	8:-78766445	MsG0880046823.01.T01:CDS
AACAGTCGCATCGGGAACCC+AGG	0.509447	8:+78766406	None:intergenic
AACAGTTTGAGAAAAGCACT+TGG	0.582322	8:-78762089	MsG0880046823.01.T01:CDS
AACCGATATGCCATTCACAC+CGG	0.623608	8:-78766039	MsG0880046823.01.T01:CDS
AACCGGTGTGAATGGCATAT+CGG	0.470813	8:+78766037	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGCTAGCTATAATCCA+TGG	-	Chr8:78768769-78768788	MsG0880046823.01.T01:CDS	30.0%
AAACAACTGCTAATTTGGAA+TGG	-	Chr8:78767901-78767920	MsG0880046823.01.T01:intron	30.0%
AAAGGGATAGTTTGAGAAAA+AGG	+	Chr8:78758913-78758932	None:intergenic	30.0%
AAATCGAACCTAAAATCTTG+AGG	-	Chr8:78763359-78763378	MsG0880046823.01.T01:intron	30.0%
AAATGCTAGCTATAATCCAT+GGG	-	Chr8:78768770-78768789	MsG0880046823.01.T01:CDS	30.0%
AACAATAGTAATTGGATCGT+TGG	-	Chr8:78767563-78767582	MsG0880046823.01.T01:intron	30.0%
AAGCTCTTGATATATACAGA+AGG	-	Chr8:78766433-78766452	MsG0880046823.01.T01:CDS	30.0%
AAGTAAAGGGGTTTACATAT+AGG	-	Chr8:78762772-78762791	MsG0880046823.01.T01:intron	30.0%
AATAAACCTACATGATCCAA+CGG	+	Chr8:78761355-78761374	None:intergenic	30.0%
AATAAGTGAGATGACCTATT+TGG	-	Chr8:78768675-78768694	MsG0880046823.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	78757455	78768815	78757455	ID=MsG0880046823.01;Name=MsG0880046823.01
Chr8	mRNA	78757455	78768815	78757455	ID=MsG0880046823.01.T01;Parent=MsG0880046823.01;Name=MsG0880046823.01.T01;_AED=0.47;_eAED=0.47;_QI=0\|0.81\|0.82\|0.88\|1\|1\|17\|0\|713
Chr8	exon	78757455	78757565	78757455	ID=MsG0880046823.01.T01:exon:18925;Parent=MsG0880046823.01.T01
Chr8	exon	78758037	78758149	78758037	ID=MsG0880046823.01.T01:exon:18924;Parent=MsG0880046823.01.T01
Chr8	exon	78758783	78758855	78758783	ID=MsG0880046823.01.T01:exon:18923;Parent=MsG0880046823.01.T01
Chr8	exon	78758982	78759137	78758982	ID=MsG0880046823.01.T01:exon:18922;Parent=MsG0880046823.01.T01
Chr8	exon	78759458	78759535	78759458	ID=MsG0880046823.01.T01:exon:18921;Parent=MsG0880046823.01.T01
Chr8	exon	78759635	78759715	78759635	ID=MsG0880046823.01.T01:exon:18920;Parent=MsG0880046823.01.T01
Chr8	exon	78759803	78759868	78759803	ID=MsG0880046823.01.T01:exon:18919;Parent=MsG0880046823.01.T01
Chr8	exon	78759945	78760010	78759945	ID=MsG0880046823.01.T01:exon:18918;Parent=MsG0880046823.01.T01
Chr8	exon	78760095	78760145	78760095	ID=MsG0880046823.01.T01:exon:18917;Parent=MsG0880046823.01.T01
Chr8	exon	78760246	78760329	78760246	ID=MsG0880046823.01.T01:exon:18916;Parent=MsG0880046823.01.T01
Chr8	exon	78760578	78760678	78760578	ID=MsG0880046823.01.T01:exon:18915;Parent=MsG0880046823.01.T01
Chr8	exon	78760769	78760910	78760769	ID=MsG0880046823.01.T01:exon:18914;Parent=MsG0880046823.01.T01
Chr8	exon	78761446	78761522	78761446	ID=MsG0880046823.01.T01:exon:18913;Parent=MsG0880046823.01.T01
Chr8	exon	78761862	78761931	78761862	ID=MsG0880046823.01.T01:exon:18912;Parent=MsG0880046823.01.T01
Chr8	exon	78762034	78762155	78762034	ID=MsG0880046823.01.T01:exon:18911;Parent=MsG0880046823.01.T01
Chr8	exon	78765976	78766500	78765976	ID=MsG0880046823.01.T01:exon:18910;Parent=MsG0880046823.01.T01
Chr8	exon	78768590	78768815	78768590	ID=MsG0880046823.01.T01:exon:18909;Parent=MsG0880046823.01.T01
Chr8	CDS	78768590	78768815	78768590	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78765976	78766500	78765976	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78762034	78762155	78762034	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78761862	78761931	78761862	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78761446	78761522	78761446	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78760769	78760910	78760769	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78760578	78760678	78760578	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78760246	78760329	78760246	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78760095	78760145	78760095	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78759945	78760010	78759945	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78759803	78759868	78759803	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78759635	78759715	78759635	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78759458	78759535	78759458	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78758982	78759137	78758982	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78758783	78758855	78758783	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78758037	78758149	78758037	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01
Chr8	CDS	78757455	78757565	78757455	ID=MsG0880046823.01.T01:cds;Parent=MsG0880046823.01.T01

Gene Sequence

>MsG0880046823.01.T01

ATGCGTCAGAAAAGCCTGCATTCATGCAGACACAATTTGCCAGGGGTTGAGCCAGGGCATGTGCCAGGAGCGCATTTGCCAGGAGCTAAAGCCCTGGTAGGTTCATTTGCGATGAGCAGATTTGCGAGTGATTCTGCTCCTGGCAAAACTCCTGGCAAACGTCCAGTTGCCAAGGCTTTTAGCATTTTTCCAGGGCTTCTGCCCCTGGCAAAATGCAACATTTCTTTAGCGCATGTTGACGTGCTTTCGGATGTAGTGAAACAGTCAAGTCCGGAATCACGGGACGTGGTGGTGGTTCCCTGGGTTCCCGATGCGACTGTTTCGCTCTCATCCTCAATTGTGCATGTAGATGTGCATGGTTTTTCTGTTGACTTGGTTTCCTCCGCTTCTGCCAGGAAGGAGTCATCGGTTCAGCAATTTGTAGTGCACGATGACGTGCAATCTTGCCCCCCAGTCTCTCCACTTGGTCCACTTGTTGAGACAGATTTGTTAACTGATTACGAGAGACTAGAACATAATGACTCACTGTCTATTGTGACATGTAATGTGGGTCCAGATGAACATGGTAACATGGTTTTAGTTGTGCATGAGAACACACACAACAGTCCGAGAATACAACATAACATGGAATTATGGCGTCGTATTCGTGAATATGATGCAAAAGCAACCGATATGCCATTCACACCGGTTTTATCTAAGAAGCAGAAACAACAAATTAAGAAACAAATTCAGGTTGGGAAGTATCAACATAGATTTTGGAATTGTGAGAGGGAGAATATGTCTGGTGGAACGCAGAACAGTTTGAGAAAAGCACTTGGAGCTCTTAAGGACACCACTACTGTCTCATTGGCTAAGGTCAACAGTGGTTACAAGGAGTTGGACATTGCTATCGTTCGAGCAACGAATCATGTTGAACGCCCAGCTAAGGAGAAACACATTCGAGCTACAAGACCTAGGGCTGACGTTGCCTATTGCATCCATGCTCTCGCTAGGCGATTATCAAAGACACATAACTGGGCTGTTGCTTTGAAAACTTTAATTGTCATTCACCGTGCTCTGAGGGAGGTGGATCCCACATTTCATGAAGAACTCATTAATTATGGGAGAAGTAGAAGTCATATGCTCAACATGGCTCATTTTAAAGATGACTCGAGTCCAAATGCATGGGATTTTTCTGCATGGGTTCGCAGTTATGCATTATTTTTGGAGGAAAGGCTGGAATGTTTTCGTGTGTTGAAGTATGACATTGAGGCTGATCGTCCTAGGACCAAAGATTTGGATACTGCAGAATTGCTAGAGCAGTTGCCAGCTTTACAACAGCTTCTCTATCGAGTTATTGGTTGCCAGCCACAAGGAGCAGCTGTAAATAATTTTGTGATTCAGTTAGCACTCCAATTGGTTGCTTCGGAAAGCATTAAAATTTATCAAGCCATTAGTGATGGAACTGTTAATATGGTTGATAAGTTTTTTGAGATGCAACGGGAAGATGCTTTGAAAGCTCTTGATATATACAGAAGGGTTGGGCTGCAGGCTGAGAGACTGTCAGAGTTTTATGAAATATGCCGTAATCTTGATATTGGACGTGGAGAGAAGTTCATCAAAGTTGAGCAGCCCCCATCATCGTTTATGCAAGCCATGGAAGACTATGTCAAAGATGCTCCCCAGGGAGCAATAGTTCGAAAGGATCAGGCCGTTGACAACAAAATTGCTGCTCCAAAAGAAGTTTTGGCTATTGAATACAATAAGGAACCAGAAGTGAAGGAGGAACGTGCACCCTCGCCCCCTCCACCGTCTGAACCTGTGAAAGTGGAAACACCACCAGTACAACCACCACCTGATCTTTTGAATATGGATGATCCTGTTCCGGCTGCTGCAGAATTGGAAGAGAAGAATGCCTTGGCTTTAGCCATCGTTCCCGCTGATCAACAACCTTCTGCTGTTTCAAATCATGCAAATGGAACCGCTGGGTGGGAATTGGCTCTTGTTACAGCTCCTAGCTCAAATGAAAGTGCTGCAGCAGCTAGCAAATTGGCTGGAGGTTTGGACATGCTTACATTAGACAGCCTATATGATGATGCACTGAGAAGAAACAACCAAAATGCTAGCTATAATCCATGGGAGCAAGCACGGCTGGAGGCATGA

Protein sequence

>MsG0880046823.01.T01

MRQKSLHSCRHNLPGVEPGHVPGAHLPGAKALVGSFAMSRFASDSAPGKTPGKRPVAKAFSIFPGLLPLAKCNISLAHVDVLSDVVKQSSPESRDVVVVPWVPDATVSLSSSIVHVDVHGFSVDLVSSASARKESSVQQFVVHDDVQSCPPVSPLGPLVETDLLTDYERLEHNDSLSIVTCNVGPDEHGNMVLVVHENTHNSPRIQHNMELWRRIREYDAKATDMPFTPVLSKKQKQQIKKQIQVGKYQHRFWNCERENMSGGTQNSLRKALGALKDTTTVSLAKVNSGYKELDIAIVRATNHVERPAKEKHIRATRPRADVAYCIHALARRLSKTHNWAVALKTLIVIHRALREVDPTFHEELINYGRSRSHMLNMAHFKDDSSPNAWDFSAWVRSYALFLEERLECFRVLKYDIEADRPRTKDLDTAELLEQLPALQQLLYRVIGCQPQGAAVNNFVIQLALQLVASESIKIYQAISDGTVNMVDKFFEMQREDALKALDIYRRVGLQAERLSEFYEICRNLDIGRGEKFIKVEQPPSSFMQAMEDYVKDAPQGAIVRKDQAVDNKIAAPKEVLAIEYNKEPEVKEERAPSPPPPSEPVKVETPPVQPPPDLLNMDDPVPAAAELEEKNALALAIVPADQQPSAVSNHANGTAGWELALVTAPSSNESAAAASKLAGGLDMLTLDSLYDDALRRNNQNASYNPWEQARLEA*