AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000640.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000640.01.T01 MTR_1g011460 93.320 494 9 1 96 565 1 494 0.0 935
MsG0180000640.01.T01 MTR_3g107980 76.248 501 84 6 96 563 1 499 0.0 769
MsG0180000640.01.T01 MTR_4g113020 57.285 501 174 6 96 560 1 497 0.0 584
MsG0180000640.01.T01 MTR_6g022720 51.670 509 202 4 96 562 1 507 0.0 524
MsG0180000640.01.T01 MTR_3g086010 50.973 514 202 5 96 561 1 512 2.21e-177 511
MsG0180000640.01.T01 MTR_1g062950 55.297 472 183 4 105 552 13 480 1.84e-175 505
MsG0180000640.01.T01 MTR_3g080070 55.459 458 179 2 128 561 67 523 2.84e-173 501
MsG0180000640.01.T01 MTR_4g113020 62.943 367 121 4 96 451 1 363 5.33e-167 480
MsG0180000640.01.T01 MTR_1g111570 48.283 495 220 7 96 561 1 488 6.93e-156 455
MsG0180000640.01.T01 MTR_6g022720 55.526 371 146 2 96 448 1 370 4.81e-146 427
MsG0180000640.01.T01 MTR_7g102900 59.517 331 127 2 121 448 9 335 5.46e-133 392
MsG0180000640.01.T01 MTR_1g112940 39.651 401 211 4 174 548 39 434 1.55e-107 330
MsG0180000640.01.T01 MTR_7g102920 58.252 103 43 0 446 548 17 119 1.47e-32 121
MsG0180000640.01.T01 MTR_7g081250 61.538 52 20 0 14 65 60 111 5.30e-15 71.6
MsG0180000640.01.T01 MTR_8g027132 85.714 35 5 0 3 37 114 148 4.89e-12 64.3
MsG0180000640.01.T01 MTR_4g028270 72.500 40 11 0 1 40 41 80 9.68e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000640.01.T01 AT5G25510 69.661 501 116 4 96 565 1 496 0.0 717
MsG0180000640.01.T01 AT4G15415 54.241 507 188 7 96 560 1 505 0.0 532
MsG0180000640.01.T01 AT4G15415 54.241 507 188 7 96 560 1 505 0.0 532
MsG0180000640.01.T01 AT4G15415 54.241 507 188 7 96 560 1 505 0.0 532
MsG0180000640.01.T01 AT4G15415 54.241 507 188 7 96 560 1 505 0.0 532
MsG0180000640.01.T01 AT3G21650 51.685 534 182 7 96 560 1 527 0.0 530
MsG0180000640.01.T01 AT3G21650 51.685 534 182 7 96 560 1 527 0.0 530
MsG0180000640.01.T01 AT1G13460 61.962 418 134 2 157 550 71 487 0.0 527
MsG0180000640.01.T01 AT1G13460 61.962 418 134 2 157 550 71 487 0.0 527
MsG0180000640.01.T01 AT3G26020 54.420 509 177 7 96 550 1 508 0.0 523
MsG0180000640.01.T01 AT3G26020 54.420 509 177 7 96 550 1 508 0.0 523
MsG0180000640.01.T01 AT3G26020 54.420 509 177 7 96 550 1 508 0.0 523
MsG0180000640.01.T01 AT3G26020 54.420 509 177 7 96 550 1 508 0.0 523
MsG0180000640.01.T01 AT3G09880 53.196 485 194 4 96 548 1 484 2.19e-170 493
MsG0180000640.01.T01 AT5G03470 50.000 486 204 4 96 546 1 482 1.53e-164 478
MsG0180000640.01.T01 AT3G26030 49.687 479 203 7 96 545 1 470 3.32e-157 458
MsG0180000640.01.T01 AT4G15415 58.221 371 136 5 96 448 1 370 1.53e-146 429
MsG0180000640.01.T01 AT3G54930 47.930 459 212 3 116 549 38 494 2.39e-146 431
MsG0180000640.01.T01 AT3G54930 47.930 459 212 3 116 549 38 494 2.39e-146 431
MsG0180000640.01.T01 AT3G26020 45.607 535 176 9 96 545 1 505 2.42e-142 421
MsG0180000640.01.T01 AT3G26020 45.607 535 176 9 96 545 1 505 2.42e-142 421
MsG0180000640.01.T01 AT3G26020 45.607 535 176 9 96 545 1 505 2.42e-142 421
MsG0180000640.01.T01 AT3G26020 45.315 523 212 11 96 545 1 522 7.90e-138 410
MsG0180000640.01.T01 AT3G54930 48.802 334 168 2 116 448 38 369 4.47e-107 327

Find 136 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACCTTTGGTGCCATTTA+AGG 0.157149 1:-9060000 MsG0180000640.01.T01:CDS
ATCTTGTCATACTAACTTTA+AGG 0.180792 1:-9058198 MsG0180000640.01.T01:CDS
TTTCCTGCCAGCATGGTTTC+TGG 0.193282 1:-9060026 MsG0180000640.01.T01:CDS
GTTAATCGATTTCCGAATAA+AGG 0.213531 1:+9059473 None:intergenic
TCCGAGATACCCCTGCATTT+TGG 0.227257 1:+9058025 None:intergenic
CCATGCCTCCTTTCGCTTCT+CGG 0.228238 1:+9058148 None:intergenic
GCATTTGGAACATCCTTAAA+TGG 0.232790 1:+9059987 None:intergenic
CTTGCACAAGCCTAAATCTT+TGG 0.243418 1:-9059307 MsG0180000640.01.T01:CDS
GGGTTAGTACTTGTATTTAA+TGG 0.247643 1:+9057759 None:intergenic
GGGTGAATTGGAAGAAATTT+TGG 0.250951 1:-9059151 MsG0180000640.01.T01:CDS
TTCATAATCCCGACTGTATA+TGG 0.251601 1:-9062055 MsG0180000640.01.T01:CDS
GGAGGCTATGGTGTTACTTC+TGG 0.263230 1:-9057965 MsG0180000640.01.T01:three_prime_UTR
GCCAGTCTCAAACCTGTAAT+TGG 0.271717 1:-9058107 MsG0180000640.01.T01:CDS
TCTTTCTGACTATTTGTTAC+TGG 0.282188 1:+9059186 None:intergenic
TTGCACAAGCCTAAATCTTT+GGG 0.291105 1:-9059306 MsG0180000640.01.T01:CDS
CCACCTAATTATAGGGCTAA+TGG 0.304137 1:-9059753 MsG0180000640.01.T01:CDS
ACAGCAGTATTTCCAATTAC+AGG 0.317685 1:+9058095 None:intergenic
ATTGTTGGGTGGCGGCATTT+TGG 0.328941 1:-9057992 MsG0180000640.01.T01:three_prime_UTR
TAAGCGGTTTGTTAAAATAC+TGG 0.331723 1:-9059209 MsG0180000640.01.T01:CDS
CGAATTGAATAGCGATTTAC+CGG 0.353226 1:+9057679 None:intergenic
ACACCATTAGCCCTATAATT+AGG 0.353783 1:+9059750 None:intergenic
TGAGTTAAGTTTATAACTGC+TGG 0.354348 1:+9058266 None:intergenic
GGTTTCTGGTATTGAACCTT+TGG 0.364040 1:-9060012 MsG0180000640.01.T01:CDS
CAGCGCCACCCTGCGGTCGC+TGG 0.367997 1:+9060081 None:intergenic
TAATATCAGAAAGATGTTCT+TGG 0.368168 1:-9058243 MsG0180000640.01.T01:CDS
TGGTGCATAGACCCTTTATT+CGG 0.370706 1:-9059485 MsG0180000640.01.T01:CDS
GAGCTATATAATGAGCAGTT+TGG 0.373159 1:+9062087 None:intergenic
ATTGGTTGATTTCAGCTTCT+GGG 0.393019 1:-9060210 MsG0180000640.01.T01:intron
TTAATCGATTTCCGAATAAA+GGG 0.397324 1:+9059474 None:intergenic
ACCTAGTATTTCCGCAGTCT+TGG 0.404175 1:-9062018 MsG0180000640.01.T01:CDS
AACTATGTTGGATCTATTGT+TGG 0.406775 1:-9062176 MsG0180000640.01.T01:CDS
AACAATAGATCCAACATAGT+TGG 0.418698 1:+9062178 None:intergenic
GAATCTAAAACATACAAACT+TGG 0.422915 1:+9057715 None:intergenic
AACTTGGGCAGTTGTCAAAC+AGG 0.425178 1:+9057731 None:intergenic
TAACGGGATTGCTGAGTTGT+TGG 0.427203 1:-9059412 MsG0180000640.01.T01:CDS
ATAACAATGCTTGCTAGCTT+CGG 0.430662 1:+9059231 None:intergenic
GGTCATTGTTCCATAAGAAA+AGG 0.432269 1:+9058378 None:intergenic
TATTTAATGGAGAGCAACTA+AGG 0.434977 1:+9057772 None:intergenic
TCGGAATCCTCAGGAATTGT+TGG 0.438357 1:-9058007 MsG0180000640.01.T01:three_prime_UTR
TTGATATTCTTATCTAGTGC+TGG 0.438360 1:+9058302 None:intergenic
TCCAAAATGCAGGGGTATCT+CGG 0.438892 1:-9058026 MsG0180000640.01.T01:three_prime_UTR
GATTACTACTTTGTGGTACA+TGG 0.440598 1:-9057918 MsG0180000640.01.T01:three_prime_UTR
CGCCACCCTGCGGTCGCTGG+TGG 0.446485 1:+9060084 None:intergenic
ATCCTATGTTTGATCCTGCT+TGG 0.447732 1:-9059695 MsG0180000640.01.T01:CDS
TAGGGTTTATGGGAAGTTCA+TGG 0.454043 1:-9059505 MsG0180000640.01.T01:CDS
ATCTAGTGCTGGAAATATGA+TGG 0.458021 1:+9058313 None:intergenic
AGATGTGAAAAGGAAAACTT+TGG 0.460993 1:-9059877 MsG0180000640.01.T01:CDS
TCCAATTACAGGTTTGAGAC+TGG 0.462838 1:+9058106 None:intergenic
GCAGTTGTCAAACAGGCTCT+CGG 0.466239 1:+9057738 None:intergenic
ACAATAGATCCAACATAGTT+GGG 0.475473 1:+9062179 None:intergenic
GTGGTACATGGTTTACCTCA+TGG 0.476362 1:-9057906 MsG0180000640.01.T01:three_prime_UTR
TAAAAGCCACCAGCGACCGC+AGG 0.477797 1:-9060090 MsG0180000640.01.T01:CDS
GCTGTTTGATTACTACTTTG+TGG 0.479604 1:-9057925 MsG0180000640.01.T01:three_prime_UTR
CAGAAAGATGTTCTTGGAGA+TGG 0.481131 1:-9058237 MsG0180000640.01.T01:CDS
GGCTGTGTTTCCTGCCAGCA+TGG 0.481767 1:-9060033 MsG0180000640.01.T01:CDS
AGATTCTAGTTGAAGCAAAC+CGG 0.482479 1:-9057698 MsG0180000640.01.T01:three_prime_UTR
TTCAAACAATCTCTTTCTCT+AGG 0.484649 1:+9059540 None:intergenic
CGGAATCCTCAGGAATTGTT+GGG 0.484671 1:-9058006 MsG0180000640.01.T01:three_prime_UTR
GCTGTGGATTTCCAAAATGC+AGG 0.486877 1:-9058036 MsG0180000640.01.T01:three_prime_UTR
AGTTGCAAATGTGGCCAAGC+AGG 0.488605 1:+9059681 None:intergenic
AGATGCTTCTAATGTGGTTC+AGG 0.489331 1:-9062225 MsG0180000640.01.T01:CDS
TATTACGCAGTTCTTAGAAA+AGG 0.492907 1:-9059256 MsG0180000640.01.T01:CDS
ATCAAACAATTCAAGCAACT+TGG 0.497011 1:+9059572 None:intergenic
ACATTTGATTTCACTGATCC+TGG 0.499527 1:-9059918 MsG0180000640.01.T01:CDS
CTACACATTGCAAGAATAGC+AGG 0.504754 1:+9059807 None:intergenic
CAGTTGTCAAACAGGCTCTC+GGG 0.510469 1:+9057739 None:intergenic
GTCATTGTTCCATAAGAAAA+GGG 0.512682 1:+9058379 None:intergenic
TTCTCAGCAACATTCTTACC+AGG 0.517344 1:+9059900 None:intergenic
TCATAAACAAGTTGCAAATG+TGG 0.518027 1:+9059672 None:intergenic
GCTTGAATTGTTTGATTCTG+AGG 0.525615 1:-9059565 MsG0180000640.01.T01:CDS
CTCTTCAATCCATATACAGT+CGG 0.527760 1:+9062046 None:intergenic
AAGATTTAGGCTTGTGCAAG+GGG 0.529195 1:+9059310 None:intergenic
GAGTTAAGTTTATAACTGCT+GGG 0.529706 1:+9058267 None:intergenic
CAACAACATCCCAACTATGT+TGG 0.530294 1:-9062188 MsG0180000640.01.T01:CDS
AGGGGTATCTCGGAATCCTC+AGG 0.531363 1:-9058016 MsG0180000640.01.T01:three_prime_UTR
TTCAACGTGTCTTGATGCTA+AGG 0.531979 1:-9059628 MsG0180000640.01.T01:CDS
TCTCAGTTTCAATCACGAAT+CGG 0.533096 1:+9059439 None:intergenic
ATTGAAACTGAGAAACATAA+CGG 0.535729 1:-9059429 MsG0180000640.01.T01:CDS
GCCAAGACTGCGGAAATACT+AGG 0.538679 1:+9062017 None:intergenic
ATTTGCTCTACCTTTGAAAG+AGG 0.540618 1:-9059364 MsG0180000640.01.T01:CDS
GAAAACTGATTCAGATGGGT+CGG 0.541158 1:-9060141 MsG0180000640.01.T01:CDS
TTGCTGAGAAAGATGTGAAA+AGG 0.544023 1:-9059887 MsG0180000640.01.T01:CDS
AAAACTGATTCAGATGGGTC+GGG 0.544453 1:-9060140 MsG0180000640.01.T01:CDS
AAAGGCTCATGCAGTGGATG+TGG 0.546897 1:-9057873 MsG0180000640.01.T01:three_prime_UTR
ACATCGAAAACTGATTCAGA+TGG 0.548086 1:-9060146 MsG0180000640.01.T01:CDS
AATCTAAAACATACAAACTT+GGG 0.548356 1:+9057716 None:intergenic
AGTAACAAATAGTCAGAAAG+AGG 0.549106 1:-9059184 MsG0180000640.01.T01:CDS
TCTTCAATCCATATACAGTC+GGG 0.549173 1:+9062047 None:intergenic
TTGAAACTGAGAAACATAAC+GGG 0.549613 1:-9059428 MsG0180000640.01.T01:CDS
CCGAGAAGCGAAAGGAGGCA+TGG 0.554722 1:-9058148 MsG0180000640.01.T01:CDS
CTGTGGATTTCCAAAATGCA+GGG 0.556847 1:-9058035 MsG0180000640.01.T01:three_prime_UTR
ATAAGAATATCAAAAGCCAC+TGG 0.557117 1:-9058292 MsG0180000640.01.T01:CDS
TGATGGGCAGTATCACTTGA+CGG 0.557965 1:+9058330 None:intergenic
ATACCAGAAACCATGCTGGC+AGG 0.558392 1:+9060023 None:intergenic
CCTCAGGAATTGTTGGGTGG+CGG 0.558446 1:-9058000 MsG0180000640.01.T01:three_prime_UTR
AAAGATTTAGGCTTGTGCAA+GGG 0.560195 1:+9059309 None:intergenic
AAGGTACATACACAGAAAGA+AGG 0.561279 1:+9057808 None:intergenic
CTAAGGACTGTAATGTAAGA+AGG 0.561780 1:+9057789 None:intergenic
TGCACAAGCCTAAATCTTTG+GGG 0.562777 1:-9059305 MsG0180000640.01.T01:CDS
TCTAGTGCTGGAAATATGAT+GGG 0.566737 1:+9058314 None:intergenic
CAAAGATTTAGGCTTGTGCA+AGG 0.572618 1:+9059308 None:intergenic
GACTATTTCAGGTAGCTGAA+AGG 0.579450 1:-9058403 MsG0180000640.01.T01:intron
GTTGATTCCCAACGTACTGC+CGG 0.580380 1:-9060113 MsG0180000640.01.T01:CDS
TTATAACTGCTGGGTTCCAG+TGG 0.581090 1:+9058276 None:intergenic
CTAGCAAGCATTGTTATAAG+CGG 0.585033 1:-9059225 MsG0180000640.01.T01:CDS
CATGCAGTTCATGTCATCAA+AGG 0.587233 1:+9058062 None:intergenic
GACTGCGGAAATACTAGGTG+GGG 0.587498 1:+9062022 None:intergenic
ATTGAAACGAGCTTCTTCGT+CGG 0.594489 1:-9060054 MsG0180000640.01.T01:CDS
CTCGGAAGCCGAGAAGCGAA+AGG 0.595900 1:-9058156 MsG0180000640.01.T01:CDS
AATGGTGTTGTTGCTAGTGG+TGG 0.597850 1:-9059735 MsG0180000640.01.T01:CDS
AAAAGCCACCAGCGACCGCA+GGG 0.600230 1:-9060089 MsG0180000640.01.T01:CDS
CATGAACTGCATGCTAGCTG+TGG 0.602145 1:-9058052 MsG0180000640.01.T01:exon
TTCAATACCAGAAACCATGC+TGG 0.603743 1:+9060019 None:intergenic
ACATCCTTAAATGGCACCAA+AGG 0.607400 1:+9059996 None:intergenic
GCACAAGCCTAAATCTTTGG+GGG 0.609126 1:-9059304 MsG0180000640.01.T01:CDS
TAAGAACTGCGTAATACAGA+AGG 0.612374 1:+9059263 None:intergenic
GCTAATGGTGTTGTTGCTAG+TGG 0.615309 1:-9059738 MsG0180000640.01.T01:CDS
AGACTGCGGAAATACTAGGT+GGG 0.617443 1:+9062021 None:intergenic
AGGAACACAAAATCTTCTTG+TGG 0.618445 1:-9059344 MsG0180000640.01.T01:CDS
ATTCTTGCATGTTAGACGTG+AGG 0.621182 1:-9062114 MsG0180000640.01.T01:CDS
CATCGAAAACTGATTCAGAT+GGG 0.628447 1:-9060145 MsG0180000640.01.T01:CDS
TTGTCATACTAACTTTAAGG+AGG 0.630616 1:-9058195 MsG0180000640.01.T01:CDS
GAGCAATCAAATTTACAATG+TGG 0.630738 1:+9058357 None:intergenic
AATCCTCAGGAATTGTTGGG+TGG 0.636915 1:-9058003 MsG0180000640.01.T01:three_prime_UTR
CCATTAGCCCTATAATTAGG+TGG 0.638080 1:+9059753 None:intergenic
AATCAAATGTCACACAACAA+AGG 0.641518 1:+9059931 None:intergenic
AATTACAGGTTTGAGACTGG+CGG 0.648674 1:+9058109 None:intergenic
GGAATCAGATGCTTCTAATG+TGG 0.659861 1:-9062231 MsG0180000640.01.T01:CDS
GGAAGCCGAGAAGCGAAAGG+AGG 0.671731 1:-9058153 MsG0180000640.01.T01:CDS
AAGACTGCGGAAATACTAGG+TGG 0.673991 1:+9062020 None:intergenic
AATGAAGCAGCGCCACCCTG+CGG 0.677523 1:+9060074 None:intergenic
GGCCAAGCAGGATCAAACAT+AGG 0.678457 1:+9059693 None:intergenic
CCGCCACCCAACAATTCCTG+AGG 0.682346 1:+9058000 None:intergenic
AGCCACCAGCGACCGCAGGG+TGG 0.692570 1:-9060086 MsG0180000640.01.T01:CDS
TAAATCAAAAGCCAAGACTG+CGG 0.694072 1:+9062007 None:intergenic
TGTGGATTTCCAAAATGCAG+GGG 0.697463 1:-9058034 MsG0180000640.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAGTGATATAAAAAAA+TGG - Chr1:9058657-9058676 MsG0180000640.01.T01:intron 10.0%
!! AAATTTATGTCAAATTATAA+TGG + Chr1:9058994-9059013 None:intergenic 10.0%
!!! AACTTTAAAGTAAATATAAT+TGG + Chr1:9061055-9061074 None:intergenic 10.0%
!!! ACTTTAAAGTAAATATAATT+GGG + Chr1:9061054-9061073 None:intergenic 10.0%
!!! ATGGTTTAATTTATTTTTTA+AGG - Chr1:9058741-9058760 MsG0180000640.01.T01:intron 10.0%
!!! ATTTATTTTTTAAGGTAAAT+AGG - Chr1:9058749-9058768 MsG0180000640.01.T01:intron 10.0%
!!! ATTTTTCATTTTATTTTTCA+AGG + Chr1:9059045-9059064 None:intergenic 10.0%
!!! AATAACAGAAACATATTTTT+GGG + Chr1:9058495-9058514 None:intergenic 15.0%
!!! ACAATTTTTTTAGATGAATT+TGG + Chr1:9059260-9059279 None:intergenic 15.0%
!!! AGTAATTCCTTTTTTTTTTA+AGG - Chr1:9058852-9058871 MsG0180000640.01.T01:intron 15.0%
!!! TTCACATTTTCTATAAAAAT+TGG - Chr1:9059296-9059315 MsG0180000640.01.T01:CDS 15.0%
!!! TTTGAAAACAATTTTACATA+GGG - Chr1:9060398-9060417 MsG0180000640.01.T01:intron 15.0%
!! AAATCAAATCTTGAAAATTG+TGG + Chr1:9059483-9059502 None:intergenic 20.0%
!! ACTTATAATGACATATAGTT+GGG + Chr1:9061088-9061107 None:intergenic 20.0%
!! GATATAAAAAAATGGAAAGA+CGG - Chr1:9058665-9058684 MsG0180000640.01.T01:intron 20.0%
!! TTTACAAAAGAGATATCAAT+GGG - Chr1:9058204-9058223 MsG0180000640.01.T01:CDS 20.0%
!!! AATCTAAAACATACAAACTT+GGG + Chr1:9062208-9062227 None:intergenic 20.0%
!!! ATGTTATTTTTCCATTCAAA+AGG - Chr1:9060938-9060957 MsG0180000640.01.T01:intron 20.0%
!!! ATTCCTTTTTTTTTTAAGGA+TGG - Chr1:9058856-9058875 MsG0180000640.01.T01:intron 20.0%
!!! CTTGAAAATTTTACCTTTTT+AGG - Chr1:9059588-9059607 MsG0180000640.01.T01:CDS 20.0%
!!! GAATAACAGAAACATATTTT+TGG + Chr1:9058496-9058515 None:intergenic 20.0%
!!! GTTTGAAAACAATTTTACAT+AGG - Chr1:9060397-9060416 MsG0180000640.01.T01:intron 20.0%
!!! TAAAAGTATCGCTTAAAATT+TGG - Chr1:9058457-9058476 MsG0180000640.01.T01:intron 20.0%
!!! TAAAATTTTCAAGAAATGCA+GGG + Chr1:9059581-9059600 None:intergenic 20.0%
!!! TTATGTCAAATTATAATGGA+TGG + Chr1:9058990-9059009 None:intergenic 20.0%
!!! TTTCTTTCTCCATTTTTTTA+TGG - Chr1:9059108-9059127 MsG0180000640.01.T01:intron 20.0%
!!! TTTTTTGTCAACTAAACTAA+TGG - Chr1:9058722-9058741 MsG0180000640.01.T01:intron 20.0%
! AAGAAAAAGAGAGAAAACAA+AGG + Chr1:9059085-9059104 None:intergenic 25.0%
! AAGTTACTACAACTAGTATT+TGG + Chr1:9058701-9058720 None:intergenic 25.0%
! ACCATGTATTATACTTTCAA+GGG + Chr1:9061114-9061133 None:intergenic 25.0%
! AGAAAAAGAGAGAAAACAAA+GGG + Chr1:9059084-9059103 None:intergenic 25.0%
! ATCTTGTCATACTAACTTTA+AGG - Chr1:9061723-9061742 MsG0180000640.01.T01:intron 25.0%
! ATGAATTTGGAAAAAGATGA+TGG + Chr1:9059247-9059266 None:intergenic 25.0%
! ATTGAAACTGAGAAACATAA+CGG - Chr1:9060492-9060511 MsG0180000640.01.T01:intron 25.0%
! CAACTATATGTCATTATAAG+TGG - Chr1:9061087-9061106 MsG0180000640.01.T01:intron 25.0%
! CACTTATAATGACATATAGT+TGG + Chr1:9061089-9061108 None:intergenic 25.0%
! CTTTACAAAAGAGATATCAA+TGG - Chr1:9058203-9058222 MsG0180000640.01.T01:CDS 25.0%
! GATCTATTGCCATAAAAAAA+TGG + Chr1:9059120-9059139 None:intergenic 25.0%
! GTGAGAGTTAACTTAAAATT+AGG + Chr1:9058625-9058644 None:intergenic 25.0%
! TAATATCAGAAAGATGTTCT+TGG - Chr1:9061678-9061697 MsG0180000640.01.T01:intron 25.0%
! TCAAAGTTTAGTCTGATATA+AGG - Chr1:9058421-9058440 MsG0180000640.01.T01:intron 25.0%
! TTGTATAAAGTTTGTCTCTT+GGG + Chr1:9058350-9058369 None:intergenic 25.0%
! TTTGTATAAAGTTTGTCTCT+TGG + Chr1:9058351-9058370 None:intergenic 25.0%
!! AAATGTAAAAGGTTTGGAAT+TGG - Chr1:9059693-9059712 MsG0180000640.01.T01:CDS 25.0%
!! AATACATGGTGAATCATTTT+GGG - Chr1:9061124-9061143 MsG0180000640.01.T01:intron 25.0%
!! ACAATTTTACATAGGGTTTA+TGG - Chr1:9060405-9060424 MsG0180000640.01.T01:intron 25.0%
!! AGTTTTTCCACCTAATTATA+GGG - Chr1:9060161-9060180 MsG0180000640.01.T01:CDS 25.0%
!! CAATTTTACATAGGGTTTAT+GGG - Chr1:9060406-9060425 MsG0180000640.01.T01:intron 25.0%
!! GAATCTAAAACATACAAACT+TGG + Chr1:9062209-9062228 None:intergenic 25.0%
!! TAATACATGGTGAATCATTT+TGG - Chr1:9061123-9061142 MsG0180000640.01.T01:intron 25.0%
!! TTAATCGATTTCCGAATAAA+GGG + Chr1:9060450-9060469 None:intergenic 25.0%
!! TTGATTTTTACATCAATGCA+TGG - Chr1:9059496-9059515 MsG0180000640.01.T01:CDS 25.0%
!!! AATTTTGGAAGCAATTAACA+TGG - Chr1:9060785-9060804 MsG0180000640.01.T01:intron 25.0%
!!! AGTTGGATTTTAATCTATTC+TGG - Chr1:9061239-9061258 MsG0180000640.01.T01:intron 25.0%
!!! ATTCTTTTTTCTGTTCAACA+TGG - Chr1:9061496-9061515 MsG0180000640.01.T01:intron 25.0%
!!! GATTTTGATTGTTTCTTGAT+GGG - Chr1:9059668-9059687 MsG0180000640.01.T01:CDS 25.0%
!!! GTAAAATTTTCAAGAAATGC+AGG + Chr1:9059582-9059601 None:intergenic 25.0%
!!! GTTTTTTCTGAATCTTATAG+CGG - Chr1:9057669-9057688 MsG0180000640.01.T01:three_prime_UTR 25.0%
!!! TGATTTTGATTGTTTCTTGA+TGG - Chr1:9059667-9059686 MsG0180000640.01.T01:CDS 25.0%
!!! TTTTAATCTATTCTGGAATG+AGG - Chr1:9061246-9061265 MsG0180000640.01.T01:intron 25.0%
AACAATAGATCCAACATAGT+TGG + Chr1:9057746-9057765 None:intergenic 30.0%
AACTATGTTGGATCTATTGT+TGG - Chr1:9057745-9057764 MsG0180000640.01.T01:three_prime_UTR 30.0%
AACTTAAAATTAGGTTCTGC+AGG + Chr1:9058616-9058635 None:intergenic 30.0%
AATCAAATGTCACACAACAA+AGG + Chr1:9059993-9060012 None:intergenic 30.0%
AATGGAAAGGAATCTTAGTT+GGG + Chr1:9059165-9059184 None:intergenic 30.0%
ACAATAGATCCAACATAGTT+GGG + Chr1:9057745-9057764 None:intergenic 30.0%
AGATGTGAAAAGGAAAACTT+TGG - Chr1:9060044-9060063 MsG0180000640.01.T01:CDS 30.0%
AGTAACAAATAGTCAGAAAG+AGG - Chr1:9060737-9060756 MsG0180000640.01.T01:intron 30.0%
ATAAGAATATCAAAAGCCAC+TGG - Chr1:9061629-9061648 MsG0180000640.01.T01:intron 30.0%
ATAATGACATATAGTTGGGT+AGG + Chr1:9061084-9061103 None:intergenic 30.0%
ATCAAACAATTCAAGCAACT+TGG + Chr1:9060352-9060371 None:intergenic 30.0%
ATTGAGATCCACATATGAAA+TGG + Chr1:9059547-9059566 None:intergenic 30.0%
CACCATGTATTATACTTTCA+AGG + Chr1:9061115-9061134 None:intergenic 30.0%
CGTCCATCCTTAAAAAAAAA+AGG + Chr1:9058862-9058881 None:intergenic 30.0%
GAGCAATCAAATTTACAATG+TGG + Chr1:9061567-9061586 None:intergenic 30.0%
GTCATTGTTCCATAAGAAAA+GGG + Chr1:9061545-9061564 None:intergenic 30.0%
TAAAAACTGCCAAAACACTA+GGG + Chr1:9061429-9061448 None:intergenic 30.0%
TAACTGTGATCAACTTGTAT+TGG + Chr1:9058050-9058069 None:intergenic 30.0%
TATTACGCAGTTCTTAGAAA+AGG - Chr1:9060665-9060684 MsG0180000640.01.T01:intron 30.0%
TATTTAATGGAGAGCAACTA+AGG + Chr1:9062152-9062171 None:intergenic 30.0%
TCATAAACAAGTTGCAAATG+TGG + Chr1:9060252-9060271 None:intergenic 30.0%
TCATCATATAGTGAAACGAA+TGG + Chr1:9058179-9058198 None:intergenic 30.0%
TTAAAAACTGCCAAAACACT+AGG + Chr1:9061430-9061449 None:intergenic 30.0%
TTCAAACAATCTCTTTCTCT+AGG + Chr1:9060384-9060403 None:intergenic 30.0%
TTGAAACTGAGAAACATAAC+GGG - Chr1:9060493-9060512 MsG0180000640.01.T01:intron 30.0%
TTGAGATCCACATATGAAAT+GGG + Chr1:9059546-9059565 None:intergenic 30.0%
TTGATATTCTTATCTAGTGC+TGG + Chr1:9061622-9061641 None:intergenic 30.0%
TTGTCAATCTTTATGCACTT+TGG - Chr1:9061395-9061414 MsG0180000640.01.T01:intron 30.0%
! AAGTTCATCTTTTCAGCATT+TGG + Chr1:9059952-9059971 None:intergenic 30.0%
! AATCCTAATAGTGTTTTCCA+AGG - Chr1:9058294-9058313 MsG0180000640.01.T01:CDS 30.0%
! AATGCATGCAAGATTTTTGT+TGG + Chr1:9059199-9059218 None:intergenic 30.0%
! ATACATGGTGAATCATTTTG+GGG - Chr1:9061125-9061144 MsG0180000640.01.T01:intron 30.0%
! ATGCATGCAAGATTTTTGTT+GGG + Chr1:9059198-9059217 None:intergenic 30.0%
! ATTTTGTGTTCCTCTTTCAA+AGG + Chr1:9060570-9060589 None:intergenic 30.0%
! GAGTTTTTCCACCTAATTAT+AGG - Chr1:9060160-9060179 MsG0180000640.01.T01:CDS 30.0%
! GATTGGATGTTTAAGTTATG+AGG + Chr1:9058561-9058580 None:intergenic 30.0%
! GGGTTAGTACTTGTATTTAA+TGG + Chr1:9062165-9062184 None:intergenic 30.0%
! GTTAATCGATTTCCGAATAA+AGG + Chr1:9060451-9060470 None:intergenic 30.0%
! TCCCTTGAAAGTATAATACA+TGG - Chr1:9061110-9061129 MsG0180000640.01.T01:intron 30.0%
! TCTTTCTGACTATTTGTTAC+TGG + Chr1:9060738-9060757 None:intergenic 30.0%
! TGTTTTCAACTTTCCTCTTT+TGG - Chr1:9059431-9059450 MsG0180000640.01.T01:CDS 30.0%
! TTGTCATACTAACTTTAAGG+AGG - Chr1:9061726-9061745 MsG0180000640.01.T01:intron 30.0%
!! ACAATTTTACCTGAAAGTGT+AGG + Chr1:9060869-9060888 None:intergenic 30.0%
!! AGACTAAACTTTGAGATAGA+GGG + Chr1:9058415-9058434 None:intergenic 30.0%
!! GGATGAAGCAATTTTAATCT+CGG - Chr1:9061747-9061766 MsG0180000640.01.T01:intron 30.0%
!! TAAGCGGTTTGTTAAAATAC+TGG - Chr1:9060712-9060731 MsG0180000640.01.T01:intron 30.0%
!!! TGTAACAAACGTTGTTTTTG+TGG - Chr1:9059404-9059423 MsG0180000640.01.T01:CDS 30.0%
AAAGATTTAGGCTTGTGCAA+GGG + Chr1:9060615-9060634 None:intergenic 35.0%
AAGGTACATACACAGAAAGA+AGG + Chr1:9062116-9062135 None:intergenic 35.0%
ACACCATTAGCCCTATAATT+AGG + Chr1:9060174-9060193 None:intergenic 35.0%
ACAGCAGTATTTCCAATTAC+AGG + Chr1:9061829-9061848 None:intergenic 35.0%
ACCATGCAAACTATAGATCA+AGG + Chr1:9060976-9060995 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG + Chr1:9058286-9058305 None:intergenic 35.0%
AGAAAGGCAACAACAAAACT+AGG + Chr1:9058375-9058394 None:intergenic 35.0%
AGGAACACAAAATCTTCTTG+TGG - Chr1:9060577-9060596 MsG0180000640.01.T01:intron 35.0%
ATGAACAGCTCATCTTATCA+GGG + Chr1:9061189-9061208 None:intergenic 35.0%
CCAATAACAAACTTGATGTG+TGG - Chr1:9058004-9058023 MsG0180000640.01.T01:three_prime_UTR 35.0%
CGAATTGAATAGCGATTTAC+CGG + Chr1:9062245-9062264 None:intergenic 35.0%
CTAAGGACTGTAATGTAAGA+AGG + Chr1:9062135-9062154 None:intergenic 35.0%
CTCTTCAATCCATATACAGT+CGG + Chr1:9057878-9057897 None:intergenic 35.0%
GAAAGGCAACAACAAAACTA+GGG + Chr1:9058374-9058393 None:intergenic 35.0%
GAAAGTCACTGGAAAAATTG+TGG + Chr1:9058539-9058558 None:intergenic 35.0%
GAATGGAAAGGAATCTTAGT+TGG + Chr1:9059166-9059185 None:intergenic 35.0%
GAGCTATATAATGAGCAGTT+TGG + Chr1:9057837-9057856 None:intergenic 35.0%
GATGAAACAAGGGTTTAGAA+AGG + Chr1:9058391-9058410 None:intergenic 35.0%
GATTACTACTTTGTGGTACA+TGG - Chr1:9062003-9062022 MsG0180000640.01.T01:intron 35.0%
GCAAACTATAGATCAAGGAA+TGG + Chr1:9060971-9060990 None:intergenic 35.0%
GCTGTTTGATTACTACTTTG+TGG - Chr1:9061996-9062015 MsG0180000640.01.T01:intron 35.0%
GCTTGAATTGTTTGATTCTG+AGG - Chr1:9060356-9060375 MsG0180000640.01.T01:intron 35.0%
GGTCATTGTTCCATAAGAAA+AGG + Chr1:9061546-9061565 None:intergenic 35.0%
TAAATCAAAAGCCAAGACTG+CGG + Chr1:9057917-9057936 None:intergenic 35.0%
TAAGAACTGCGTAATACAGA+AGG + Chr1:9060661-9060680 None:intergenic 35.0%
TAAGTTATGAGGAAAGTCAC+TGG + Chr1:9058550-9058569 None:intergenic 35.0%
TAGATCTCGTTCACCTAAAA+AGG + Chr1:9059604-9059623 None:intergenic 35.0%
TCACCTTGGAAAACACTATT+AGG + Chr1:9058300-9058319 None:intergenic 35.0%
TCAGAATTGGGAAAACTTTC+TGG - Chr1:9059637-9059656 MsG0180000640.01.T01:CDS 35.0%
TCTCAGTTTCAATCACGAAT+CGG + Chr1:9060485-9060504 None:intergenic 35.0%
TCTTCAATCCATATACAGTC+GGG + Chr1:9057877-9057896 None:intergenic 35.0%
TGAGATCCACATATGAAATG+GGG + Chr1:9059545-9059564 None:intergenic 35.0%
TGGGTGAAATGTAAAAGGTT+TGG - Chr1:9059687-9059706 MsG0180000640.01.T01:CDS 35.0%
TTAACATGGTAGAGTTCCAA+AGG - Chr1:9060799-9060818 MsG0180000640.01.T01:intron 35.0%
TTCATAATCCCGACTGTATA+TGG - Chr1:9057866-9057885 MsG0180000640.01.T01:three_prime_UTR 35.0%
TTCTTAAAACTCAACGATCG+TGG - Chr1:9061309-9061328 MsG0180000640.01.T01:intron 35.0%
TTGCACAAGCCTAAATCTTT+GGG - Chr1:9060615-9060634 MsG0180000640.01.T01:intron 35.0%
TTGCTGAGAAAGATGTGAAA+AGG - Chr1:9060034-9060053 MsG0180000640.01.T01:CDS 35.0%
! AAATTTTCAACAAGCTTCCC+CGG - Chr1:9059749-9059768 MsG0180000640.01.T01:CDS 35.0%
! AATCAGTTTTCGATGTCTTC+CGG + Chr1:9059771-9059790 None:intergenic 35.0%
! AATTGGTTGATTTCAGCTTC+TGG - Chr1:9059710-9059729 MsG0180000640.01.T01:CDS 35.0%
! ACATCGAAAACTGATTCAGA+TGG - Chr1:9059775-9059794 MsG0180000640.01.T01:CDS 35.0%
! ACATTTGATTTCACTGATCC+TGG - Chr1:9060003-9060022 MsG0180000640.01.T01:CDS 35.0%
! AGATTCTAGTTGAAGCAAAC+CGG - Chr1:9062223-9062242 MsG0180000640.01.T01:CDS 35.0%
! ATAACAATGCTTGCTAGCTT+CGG + Chr1:9060693-9060712 None:intergenic 35.0%
! ATCTAGTGCTGGAAATATGA+TGG + Chr1:9061611-9061630 None:intergenic 35.0%
! ATGGATCTGATCCTTTTGAA+TGG + Chr1:9060952-9060971 None:intergenic 35.0%
! ATTGGTTGATTTCAGCTTCT+GGG - Chr1:9059711-9059730 MsG0180000640.01.T01:CDS 35.0%
! ATTTGCTCTACCTTTGAAAG+AGG - Chr1:9060557-9060576 MsG0180000640.01.T01:intron 35.0%
! CAGAAAGAGGTGATGTTTTT+GGG - Chr1:9060750-9060769 MsG0180000640.01.T01:intron 35.0%
! CAGCACTTTTACTCAAACTA+AGG + Chr1:9061366-9061385 None:intergenic 35.0%
! CATCGAAAACTGATTCAGAT+GGG - Chr1:9059776-9059795 MsG0180000640.01.T01:CDS 35.0%
! CCTTTTCAAAACTATCCATG+AGG + Chr1:9062033-9062052 None:intergenic 35.0%
! CTAGCAAGCATTGTTATAAG+CGG - Chr1:9060696-9060715 MsG0180000640.01.T01:intron 35.0%
! CTTGATGGGTGAAATGTAAA+AGG - Chr1:9059682-9059701 MsG0180000640.01.T01:CDS 35.0%
! GATTTTTGTTGGGTGATGAA+TGG + Chr1:9059188-9059207 None:intergenic 35.0%
! GCACTTTCTTTCATGGTTTT+TGG + Chr1:9058968-9058987 None:intergenic 35.0%
! GCATTTGGAACATCCTTAAA+TGG + Chr1:9059937-9059956 None:intergenic 35.0%
! GGGTGAATTGGAAGAAATTT+TGG - Chr1:9060770-9060789 MsG0180000640.01.T01:intron 35.0%
! TCAGAAAGAGGTGATGTTTT+TGG - Chr1:9060749-9060768 MsG0180000640.01.T01:intron 35.0%
! TCCAACTTGAGTTTTCAAAC+AGG + Chr1:9061226-9061245 None:intergenic 35.0%
! TCCTTGATCTATAGTTTGCA+TGG - Chr1:9060972-9060991 MsG0180000640.01.T01:intron 35.0%
! TCTAGTGCTGGAAATATGAT+GGG + Chr1:9061610-9061629 None:intergenic 35.0%
! TGTTCAACATGGACTATTTC+AGG - Chr1:9061507-9061526 MsG0180000640.01.T01:intron 35.0%
! TTGAGTTTTCAAACAGGCAA+AGG + Chr1:9061220-9061239 None:intergenic 35.0%
!! AAGAATTTGTTGACCCAGTT+CGG - Chr1:9058121-9058140 MsG0180000640.01.T01:CDS 35.0%
!! ACTAAACTTTGAGATAGAGG+GGG + Chr1:9058413-9058432 None:intergenic 35.0%
!! CAGACTAAACTTTGAGATAG+AGG + Chr1:9058416-9058435 None:intergenic 35.0%
!! CCACACATCAAGTTTGTTAT+TGG + Chr1:9058007-9058026 None:intergenic 35.0%
!! GACTAAACTTTGAGATAGAG+GGG + Chr1:9058414-9058433 None:intergenic 35.0%
!! TTTTAGGTGAACGAGATCTA+GGG - Chr1:9059604-9059623 MsG0180000640.01.T01:CDS 35.0%
!!! CATGGTTTTTGGTACTTTCA+CGG + Chr1:9058957-9058976 None:intergenic 35.0%
!!! CCTCATGGATAGTTTTGAAA+AGG - Chr1:9062030-9062049 MsG0180000640.01.T01:CDS 35.0%
!!! GGTTGAACTTGTTGATTTTG+TGG - Chr1:9060065-9060084 MsG0180000640.01.T01:CDS 35.0%
!!! GGTTTTTGAGGTTCAGAATT+GGG - Chr1:9059625-9059644 MsG0180000640.01.T01:CDS 35.0%
!!! TTGGGAAAACTTTCTGGTTT+TGG - Chr1:9059643-9059662 MsG0180000640.01.T01:CDS 35.0%
!!! TTTTTAGGTGAACGAGATCT+AGG - Chr1:9059603-9059622 MsG0180000640.01.T01:CDS 35.0%
AAACTTGATGTGTGGAGCAA+GGG - Chr1:9058012-9058031 MsG0180000640.01.T01:three_prime_UTR 40.0%
AAGAACACGTGAACCAAAAG+AGG + Chr1:9059447-9059466 None:intergenic 40.0%
AAGATTTAGGCTTGTGCAAG+GGG + Chr1:9060614-9060633 None:intergenic 40.0%
AAGTAGACCCCCAAAGATTT+AGG + Chr1:9060627-9060646 None:intergenic 40.0%
ACATCCTTAAATGGCACCAA+AGG + Chr1:9059928-9059947 None:intergenic 40.0%
AGATGCTTCTAATGTGGTTC+AGG - Chr1:9057696-9057715 MsG0180000640.01.T01:three_prime_UTR 40.0%
AGGATTGAGTCTCTTGGTTA+CGG + Chr1:9058280-9058299 None:intergenic 40.0%
ATCCTATGTTTGATCCTGCT+TGG - Chr1:9060226-9060245 MsG0180000640.01.T01:intron 40.0%
ATGGATGGCACTTTCTTTCA+TGG + Chr1:9058975-9058994 None:intergenic 40.0%
ATGTGGATCTCAATTTCACG+TGG - Chr1:9059553-9059572 MsG0180000640.01.T01:CDS 40.0%
ATTCTTGCATGTTAGACGTG+AGG - Chr1:9057807-9057826 MsG0180000640.01.T01:three_prime_UTR 40.0%
ATTGAAACGAGCTTCTTCGT+CGG - Chr1:9059867-9059886 MsG0180000640.01.T01:CDS 40.0%
CAAAGATTTAGGCTTGTGCA+AGG + Chr1:9060616-9060635 None:intergenic 40.0%
CAACAACATCCCAACTATGT+TGG - Chr1:9057733-9057752 MsG0180000640.01.T01:three_prime_UTR 40.0%
CAGAAAGATGTTCTTGGAGA+TGG - Chr1:9061684-9061703 MsG0180000640.01.T01:intron 40.0%
CATGCAGTTCATGTCATCAA+AGG + Chr1:9061862-9061881 None:intergenic 40.0%
CATTAACAGCCTACACTTTC+AGG - Chr1:9060857-9060876 MsG0180000640.01.T01:intron 40.0%
CCACCTAATTATAGGGCTAA+TGG - Chr1:9060168-9060187 MsG0180000640.01.T01:CDS 40.0%
CCATTAGCCCTATAATTAGG+TGG + Chr1:9060171-9060190 None:intergenic 40.0%
CTACACATTGCAAGAATAGC+AGG + Chr1:9060117-9060136 None:intergenic 40.0%
CTGTGGATTTCCAAAATGCA+GGG - Chr1:9061886-9061905 MsG0180000640.01.T01:intron 40.0%
CTTCAACCCCATTTCATATG+TGG - Chr1:9059536-9059555 MsG0180000640.01.T01:CDS 40.0%
CTTGCACAAGCCTAAATCTT+TGG - Chr1:9060614-9060633 MsG0180000640.01.T01:intron 40.0%
GAGATTTGCAGTTGCTTCAT+TGG - Chr1:9061147-9061166 MsG0180000640.01.T01:intron 40.0%
GATGAACAGCTCATCTTATC+AGG + Chr1:9061190-9061209 None:intergenic 40.0%
GCCTGTTTGAAAACTCAAGT+TGG - Chr1:9061222-9061241 MsG0180000640.01.T01:intron 40.0%
GGAATCAGATGCTTCTAATG+TGG - Chr1:9057690-9057709 MsG0180000640.01.T01:three_prime_UTR 40.0%
TAGGGTTTATGGGAAGTTCA+TGG - Chr1:9060416-9060435 MsG0180000640.01.T01:intron 40.0%
TCTCTTGGGAACAAACACTA+GGG + Chr1:9058336-9058355 None:intergenic 40.0%
TGCACAAGCCTAAATCTTTG+GGG - Chr1:9060616-9060635 MsG0180000640.01.T01:intron 40.0%
TGGTGCATAGACCCTTTATT+CGG - Chr1:9060436-9060455 MsG0180000640.01.T01:intron 40.0%
TGTGGATTTCCAAAATGCAG+GGG - Chr1:9061887-9061906 MsG0180000640.01.T01:intron 40.0%
TTCAACGTGTCTTGATGCTA+AGG - Chr1:9060293-9060312 MsG0180000640.01.T01:intron 40.0%
TTCAATACCAGAAACCATGC+TGG + Chr1:9059905-9059924 None:intergenic 40.0%
TTCTCAGCAACATTCTTACC+AGG + Chr1:9060024-9060043 None:intergenic 40.0%
TTGTTGGGTGATGAATGGAA+TGG + Chr1:9059183-9059202 None:intergenic 40.0%
! AAAACTGATTCAGATGGGTC+GGG - Chr1:9059781-9059800 MsG0180000640.01.T01:CDS 40.0%
! AATTACAGGTTTGAGACTGG+CGG + Chr1:9061815-9061834 None:intergenic 40.0%
! ATCAGTTTTCGATGTCTTCC+GGG + Chr1:9059770-9059789 None:intergenic 40.0%
! CTGAAAGGACCCTTTTCTTA+TGG - Chr1:9061533-9061552 MsG0180000640.01.T01:intron 40.0%
! CTGAGTTGTTGGAGATTTTC+GGG - Chr1:9060520-9060539 MsG0180000640.01.T01:intron 40.0%
! GAAAACTGATTCAGATGGGT+CGG - Chr1:9059780-9059799 MsG0180000640.01.T01:CDS 40.0%
! GACTATTTCAGGTAGCTGAA+AGG - Chr1:9061518-9061537 MsG0180000640.01.T01:intron 40.0%
! GCTGAGTTGTTGGAGATTTT+CGG - Chr1:9060519-9060538 MsG0180000640.01.T01:intron 40.0%
! TAGTTGGGCTTTCTTGTTGT+TGG + Chr1:9059150-9059169 None:intergenic 40.0%
! TCCAATTACAGGTTTGAGAC+TGG + Chr1:9061818-9061837 None:intergenic 40.0%
!! AACGAGATCTAGGGTTTTTG+AGG - Chr1:9059613-9059632 MsG0180000640.01.T01:CDS 40.0%
!! ATTTTCGGGAGTGTGATTAG+TGG - Chr1:9060534-9060553 MsG0180000640.01.T01:intron 40.0%
!! GGTTTCTGGTATTGAACCTT+TGG - Chr1:9059909-9059928 MsG0180000640.01.T01:CDS 40.0%
!! GTTTGAGTGTTGATTCACCT+TGG + Chr1:9058314-9058333 None:intergenic 40.0%
!! TGAACCTTTGGTGCCATTTA+AGG - Chr1:9059921-9059940 MsG0180000640.01.T01:CDS 40.0%
!! TTTTGAAAAGGCTCATGCAG+TGG - Chr1:9062042-9062061 MsG0180000640.01.T01:CDS 40.0%
!!! CATTTTGGTTTTGGAGGCTA+TGG - Chr1:9061944-9061963 MsG0180000640.01.T01:intron 40.0%
!!! CTTGTTGATTTTGTGGCTTG+TGG - Chr1:9060072-9060091 MsG0180000640.01.T01:CDS 40.0%
!!! GCACTTTTTCCCTAGTGTTT+TGG - Chr1:9061417-9061436 MsG0180000640.01.T01:intron 40.0%
!!! GGGTTTTTGAGGTTCAGAAT+TGG - Chr1:9059624-9059643 MsG0180000640.01.T01:CDS 40.0%
!!! GGTGATGTTTTTGGGTGAAT+TGG - Chr1:9060758-9060777 MsG0180000640.01.T01:intron 40.0%
!!! TCATGGTTCCACTGTTTTTG+CGG - Chr1:9060823-9060842 MsG0180000640.01.T01:intron 40.0%
AACTTGGGCAGTTGTCAAAC+AGG + Chr1:9062193-9062212 None:intergenic 45.0%
AAGACTGCGGAAATACTAGG+TGG + Chr1:9057904-9057923 None:intergenic 45.0%
AATCCTCAGGAATTGTTGGG+TGG - Chr1:9061918-9061937 MsG0180000640.01.T01:intron 45.0%
ACAGTGGAACCATGATCCTT+TGG + Chr1:9060818-9060837 None:intergenic 45.0%
ACCTAGTATTTCCGCAGTCT+TGG - Chr1:9057903-9057922 MsG0180000640.01.T01:three_prime_UTR 45.0%
AGACTGCGGAAATACTAGGT+GGG + Chr1:9057903-9057922 None:intergenic 45.0%
AGATAGAGGGGGATGAAACA+AGG + Chr1:9058402-9058421 None:intergenic 45.0%
AGGAATCGTGACACGATTGA+AGG + Chr1:9058596-9058615 None:intergenic 45.0%
AGGTCAATTTGGACCGAACT+GGG + Chr1:9058137-9058156 None:intergenic 45.0%
CAAACTTGATGTGTGGAGCA+AGG - Chr1:9058011-9058030 MsG0180000640.01.T01:three_prime_UTR 45.0%
CAACGATCGTGGAATCTCTA+TGG - Chr1:9061320-9061339 MsG0180000640.01.T01:intron 45.0%
CGGAATCCTCAGGAATTGTT+GGG - Chr1:9061915-9061934 MsG0180000640.01.T01:intron 45.0%
CTGGAAAAATTGTGGCACGA+TGG + Chr1:9058531-9058550 None:intergenic 45.0%
CTTGGTTACGGGAAGAGATT+GGG + Chr1:9058268-9058287 None:intergenic 45.0%
GATAGAGGGGGATGAAACAA+GGG + Chr1:9058401-9058420 None:intergenic 45.0%
GCACAAGCCTAAATCTTTGG+GGG - Chr1:9060617-9060636 MsG0180000640.01.T01:intron 45.0%
GCCAGTCTCAAACCTGTAAT+TGG - Chr1:9061814-9061833 MsG0180000640.01.T01:intron 45.0%
GCTGTGGATTTCCAAAATGC+AGG - Chr1:9061885-9061904 MsG0180000640.01.T01:intron 45.0%
GGAATCGTGACACGATTGAA+GGG + Chr1:9058595-9058614 None:intergenic 45.0%
GGATTGAGTCTCTTGGTTAC+GGG + Chr1:9058279-9058298 None:intergenic 45.0%
GGGTGATGAATGGAATGGAA+AGG + Chr1:9059178-9059197 None:intergenic 45.0%
GGTAGAGTTCCAAAGGATCA+TGG - Chr1:9060806-9060825 MsG0180000640.01.T01:intron 45.0%
GGTCCAAATTGACCTAGTCT+GGG - Chr1:9058142-9058161 MsG0180000640.01.T01:CDS 45.0%
GTCCAAATTGACCTAGTCTG+GGG - Chr1:9058143-9058162 MsG0180000640.01.T01:CDS 45.0%
GTCTCTTGGGAACAAACACT+AGG + Chr1:9058337-9058356 None:intergenic 45.0%
GTGGTACATGGTTTACCTCA+TGG - Chr1:9062015-9062034 MsG0180000640.01.T01:CDS 45.0%
TAACGGGATTGCTGAGTTGT+TGG - Chr1:9060509-9060528 MsG0180000640.01.T01:intron 45.0%
TAGGTCAATTTGGACCGAAC+TGG + Chr1:9058138-9058157 None:intergenic 45.0%
TCCAAATTGACCTAGTCTGG+GGG - Chr1:9058144-9058163 MsG0180000640.01.T01:CDS 45.0%
TCGGAATCCTCAGGAATTGT+TGG - Chr1:9061914-9061933 MsG0180000640.01.T01:intron 45.0%
TCTTGGTTACGGGAAGAGAT+TGG + Chr1:9058269-9058288 None:intergenic 45.0%
TTGGTTACGGGAAGAGATTG+GGG + Chr1:9058267-9058286 None:intergenic 45.0%
! TCAGTTTTCGATGTCTTCCG+GGG + Chr1:9059769-9059788 None:intergenic 45.0%
! TGATGGGCAGTATCACTTGA+CGG + Chr1:9061594-9061613 None:intergenic 45.0%
!! AATGGTGTTGTTGCTAGTGG+TGG - Chr1:9060186-9060205 MsG0180000640.01.T01:CDS 45.0%
!! GCTAATGGTGTTGTTGCTAG+TGG - Chr1:9060183-9060202 MsG0180000640.01.T01:CDS 45.0%
!! TCCAAAATGCAGGGGTATCT+CGG - Chr1:9061895-9061914 MsG0180000640.01.T01:intron 45.0%
!! TTGGGGCTTTGGGTAGAATT+AGG + Chr1:9058250-9058269 None:intergenic 45.0%
!!! GTTCCACTGTTTTTGCGGAT+CGG - Chr1:9060828-9060847 MsG0180000640.01.T01:intron 45.0%
!!! TTCCACTGTTTTTGCGGATC+GGG - Chr1:9060829-9060848 MsG0180000640.01.T01:intron 45.0%
AAAGGCTCATGCAGTGGATG+TGG - Chr1:9062048-9062067 MsG0180000640.01.T01:CDS 50.0%
AGTTGCAAATGTGGCCAAGC+AGG + Chr1:9060243-9060262 None:intergenic 50.0%
ATACCAGAAACCATGCTGGC+AGG + Chr1:9059901-9059920 None:intergenic 50.0%
CAGTTGTCAAACAGGCTCTC+GGG + Chr1:9062185-9062204 None:intergenic 50.0%
CATGAACTGCATGCTAGCTG+TGG - Chr1:9061869-9061888 MsG0180000640.01.T01:intron 50.0%
CGGTCCAAATTGACCTAGTC+TGG - Chr1:9058141-9058160 MsG0180000640.01.T01:CDS 50.0%
GACACGATTGAAGGGCAACA+TGG + Chr1:9058587-9058606 None:intergenic 50.0%
GACTGCGGAAATACTAGGTG+GGG + Chr1:9057902-9057921 None:intergenic 50.0%
GCAGTTGTCAAACAGGCTCT+CGG + Chr1:9062186-9062205 None:intergenic 50.0%
GCCAAGACTGCGGAAATACT+AGG + Chr1:9057907-9057926 None:intergenic 50.0%
GGCCAAGCAGGATCAAACAT+AGG + Chr1:9060231-9060250 None:intergenic 50.0%
TCCCCCAGACTAGGTCAATT+TGG + Chr1:9058148-9058167 None:intergenic 50.0%
TTTCCTGCCAGCATGGTTTC+TGG - Chr1:9059895-9059914 MsG0180000640.01.T01:CDS 50.0%
! GCTTTTACCGGCAGTACGTT+GGG + Chr1:9059818-9059837 None:intergenic 50.0%
! GTTGATTCCCAACGTACTGC+CGG - Chr1:9059808-9059827 MsG0180000640.01.T01:CDS 50.0%
! TCCGAGATACCCCTGCATTT+TGG + Chr1:9061899-9061918 None:intergenic 50.0%
!! ATTGTTGGGTGGCGGCATTT+TGG - Chr1:9061929-9061948 MsG0180000640.01.T01:intron 50.0%
!! GGAGGCTATGGTGTTACTTC+TGG - Chr1:9061956-9061975 MsG0180000640.01.T01:intron 50.0%
!! GGCTTTGGGTAGAATTAGGC+GGG + Chr1:9058246-9058265 None:intergenic 50.0%
!! GGGCTTTGGGTAGAATTAGG+CGG + Chr1:9058247-9058266 None:intergenic 50.0%
!!! TGGCGGCATTTTGGTTTTGG+AGG - Chr1:9061938-9061957 MsG0180000640.01.T01:intron 50.0%
ACGGGAAGAGATTGGGGCTT+TGG + Chr1:9058261-9058280 None:intergenic 55.0%
CACCCGATCCGCAAAAACAG+TGG + Chr1:9060834-9060853 None:intergenic 55.0%
CCATGCCTCCTTTCGCTTCT+CGG + Chr1:9061776-9061795 None:intergenic 55.0%
CCTCAGGAATTGTTGGGTGG+CGG - Chr1:9061921-9061940 MsG0180000640.01.T01:intron 55.0%
CGGGAAGAGATTGGGGCTTT+GGG + Chr1:9058260-9058279 None:intergenic 55.0%
GAAGGGCAACATGGCACGAT+TGG + Chr1:9058578-9058597 None:intergenic 55.0%
! GGCTTTTACCGGCAGTACGT+TGG + Chr1:9059819-9059838 None:intergenic 55.0%
!! AGGGGTATCTCGGAATCCTC+AGG - Chr1:9061905-9061924 MsG0180000640.01.T01:intron 55.0%
!!! GGGTGGCGGCATTTTGGTTT+TGG - Chr1:9061935-9061954 MsG0180000640.01.T01:intron 55.0%
AAAAGCCACCAGCGACCGCA+GGG - Chr1:9059832-9059851 MsG0180000640.01.T01:CDS 60.0%
AATGAAGCAGCGCCACCCTG+CGG + Chr1:9059850-9059869 None:intergenic 60.0%
CCGAGAAGCGAAAGGAGGCA+TGG - Chr1:9061773-9061792 MsG0180000640.01.T01:intron 60.0%
CCGCCACCCAACAATTCCTG+AGG + Chr1:9061924-9061943 None:intergenic 60.0%
CTCGGAAGCCGAGAAGCGAA+AGG - Chr1:9061765-9061784 MsG0180000640.01.T01:intron 60.0%
GGAAGCCGAGAAGCGAAAGG+AGG - Chr1:9061768-9061787 MsG0180000640.01.T01:intron 60.0%
GGCTGTGTTTCCTGCCAGCA+TGG - Chr1:9059888-9059907 MsG0180000640.01.T01:CDS 60.0%
GTTGCTCTCTCCCCCAGACT+AGG + Chr1:9058157-9058176 None:intergenic 60.0%
TAAAAGCCACCAGCGACCGC+AGG - Chr1:9059831-9059850 MsG0180000640.01.T01:CDS 60.0%
! CGGTCGCTGGTGGCTTTTAC+CGG + Chr1:9059830-9059849 None:intergenic 60.0%
AGCCACCAGCGACCGCAGGG+TGG - Chr1:9059835-9059854 MsG0180000640.01.T01:CDS 75.0%
! CAGCGCCACCCTGCGGTCGC+TGG + Chr1:9059843-9059862 None:intergenic 80.0%
! CGCCACCCTGCGGTCGCTGG+TGG + Chr1:9059840-9059859 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 9057667 9062276 9057667 ID=MsG0180000640.01;Name=MsG0180000640.01
Chr1 mRNA 9057667 9062276 9057667 ID=MsG0180000640.01.T01;Parent=MsG0180000640.01;Name=MsG0180000640.01.T01;_AED=0.26;_eAED=0.26;_QI=0|0|0.33|1|1|1|3|403|565
Chr1 exon 9062005 9062276 9062005 ID=MsG0180000640.01.T01:exon:2082;Parent=MsG0180000640.01.T01
Chr1 exon 9059137 9060217 9059137 ID=MsG0180000640.01.T01:exon:2083;Parent=MsG0180000640.01.T01
Chr1 exon 9057667 9058414 9057667 ID=MsG0180000640.01.T01:exon:2084;Parent=MsG0180000640.01.T01
Chr1 CDS 9062005 9062276 9062005 ID=MsG0180000640.01.T01:cds;Parent=MsG0180000640.01.T01
Chr1 CDS 9059137 9060217 9059137 ID=MsG0180000640.01.T01:cds;Parent=MsG0180000640.01.T01
Chr1 CDS 9058070 9058414 9058070 ID=MsG0180000640.01.T01:cds;Parent=MsG0180000640.01.T01
Chr1 three_prime_UTR 9057667 9058069 9057667 ID=MsG0180000640.01.T01:three_prime_utr;Parent=MsG0180000640.01.T01
Gene Sequence

>MsG0180000640.01.T01

ATGTTTTTTCTGAATCTTATAGCGGAATCAGATGCTTCTAATGTGGTTCAGGCGCTGAACACTCATCAACAACATCCCAACTATGTTGGATCTATTGTTGGAGATTGCATTAATTTTAATGTATCTTTTTGTAGTTTAAGATTCTTGCATGTTAGACGTGAGGCTAACCAAACTGCTCATTATATAGCTCAATACTCTCTTCATAATCCCGACTGTATATGGATTGAAGAGACCCCACCTAGTATTTCCGCAGTCTTGGCTTTTGATTTATTCTTCTGGGTTGCAATGCTGAAGCAAATTTTCAACAAGCTTCCCCGGAAGACATCGAAAACTGATTCAGATGGGTCGGGTCGAGTTGATTCCCAACGTACTGCCGGTAAAAGCCACCAGCGACCGCAGGGTGGCGCTGCTTCATTGAAACGAGCTTCTTCGTCGGCTGTGTTTCCTGCCAGCATGGTTTCTGGTATTGAACCTTTGGTGCCATTTAAGGATGTTCCAAATGCTGAAAAGATGAACTTGTTTGTGAGCAAATTGAGCCTTTGTTGTGTGACATTTGATTTCACTGATCCTGGTAAGAATGTTGCTGAGAAAGATGTGAAAAGGAAAACTTTGGTTGAACTTGTTGATTTTGTGGCTTGTGGATCAATGAAATTTAGTGAACCTGCTATTCTTGCAATGTGTAGAATGTGTGCTATTAATTTGTTTAGAGTTTTTCCACCTAATTATAGGGCTAATGGTGTTGTTGCTAGTGGTGGTGAGACTGATGATGATGATCCTATGTTTGATCCTGCTTGGCCACATTTGCAACTTGTTTATGAATTGCTGCTTAAATTTATATCTTCAACGTGTCTTGATGCTAAGGTAGCGAAAAAGTATATCGATCATTCATTCATTTCCAAGTTGCTTGAATTGTTTGATTCTGAGGATCCTAGAGAAAGAGATTGTTTGAAAACAATTTTACATAGGGTTTATGGGAAGTTCATGGTGCATAGACCCTTTATTCGGAAATCGATTAACAACATATTCTACCGATTCGTGATTGAAACTGAGAAACATAACGGGATTGCTGAGTTGTTGGAGATTTTCGGGAGTGTGATTAGTGGATTTGCTCTACCTTTGAAAGAGGAACACAAAATCTTCTTGTGGAGAGTTTTGATCCCCTTGCACAAGCCTAAATCTTTGGGGGTCTACTTTCAGCAACTGTCCTTCTGTATTACGCAGTTCTTAGAAAAGGAACCGAAGCTAGCAAGCATTGTTATAAGCGGTTTGTTAAAATACTGGCCAGTAACAAATAGTCAGAAAGAGGTGATGTTTTTGGGTGAATTGGAAGAAATTTTGGAAGCAATTAACATGGTAGCTGAAAGGACCCTTTTCTTATGGAACAATGACCACATTGTAAATTTGATTGCTCATAACCGTCAAGTGATACTGCCCATCATATTTCCAGCACTAGATAAGAATATCAAAAGCCACTGGAACCCAGCAGTTATAAACTTAACTCATAATATCAGAAAGATGTTCTTGGAGATGGATGAGAAGCTTTTCATATCTTGTCATACTAACTTTAAGGAGGATGAAGCAATTTTAATCTCGGAAGCCGAGAAGCGAAAGGAGGCATGGAAACAACTAGAGCAAGCCGCCAGTCTCAAACCTGTAATTGGAAATACTGCTGTCTTAGTGTCTCCTTTGATGACATGA
Protein sequence

>MsG0180000640.01.T01

MFFLNLIAESDASNVVQALNTHQQHPNYVGSIVGDCINFNVSFCSLRFLHVRREANQTAHYIAQYSLHNPDCIWIEETPPSISAVLAFDLFFWVAMLKQIFNKLPRKTSKTDSDGSGRVDSQRTAGKSHQRPQGGAASLKRASSSAVFPASMVSGIEPLVPFKDVPNAEKMNLFVSKLSLCCVTFDFTDPGKNVAEKDVKRKTLVELVDFVACGSMKFSEPAILAMCRMCAINLFRVFPPNYRANGVVASGGETDDDDPMFDPAWPHLQLVYELLLKFISSTCLDAKVAKKYIDHSFISKLLELFDSEDPRERDCLKTILHRVYGKFMVHRPFIRKSINNIFYRFVIETEKHNGIAELLEIFGSVISGFALPLKEEHKIFLWRVLIPLHKPKSLGVYFQQLSFCITQFLEKEPKLASIVISGLLKYWPVTNSQKEVMFLGELEEILEAINMVAERTLFLWNNDHIVNLIAHNRQVILPIIFPALDKNIKSHWNPAVINLTHNIRKMFLEMDEKLFISCHTNFKEDEAILISEAEKRKEAWKQLEQAASLKPVIGNTAVLVSPLMT*