AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680035493.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035493.01.T01 MTR_6g022720 96.766 402 8 3 1 401 1 398 0.0 798
MsG0680035493.01.T01 MTR_6g022720 96.758 401 8 3 1 400 1 397 0.0 797
MsG0680035493.01.T01 MTR_3g086010 70.516 407 111 3 1 401 1 404 0.0 600
MsG0680035493.01.T01 MTR_3g086010 62.385 109 41 0 473 581 404 512 7.64e-39 150
MsG0680035493.01.T01 MTR_3g080070 53.871 607 191 11 1 592 1 533 0.0 575
MsG0680035493.01.T01 MTR_1g111570 50.803 498 172 3 84 581 64 488 1.28e-175 507
MsG0680035493.01.T01 MTR_7g102900 71.827 323 91 0 79 401 41 363 4.44e-169 486
MsG0680035493.01.T01 MTR_1g062950 65.470 362 116 4 43 401 25 380 1.98e-162 473
MsG0680035493.01.T01 MTR_1g062950 51.546 97 47 0 473 569 380 476 8.28e-26 111
MsG0680035493.01.T01 MTR_3g107980 45.424 590 222 10 1 582 1 498 8.40e-161 469
MsG0680035493.01.T01 MTR_1g011460 54.975 402 159 3 1 401 1 381 5.23e-154 452
MsG0680035493.01.T01 MTR_1g011460 46.512 129 68 1 455 582 363 491 5.58e-28 118
MsG0680035493.01.T01 MTR_4g113020 54.975 402 166 4 1 401 1 388 6.18e-152 442
MsG0680035493.01.T01 MTR_4g113020 54.975 402 166 4 1 401 1 388 7.87e-151 444
MsG0680035493.01.T01 MTR_4g113020 39.344 122 72 1 473 592 388 509 3.83e-21 97.4
MsG0680035493.01.T01 MTR_1g112940 45.763 295 158 1 107 401 46 338 3.25e-91 289
MsG0680035493.01.T01 MTR_1g112940 35.789 95 57 2 473 565 338 430 2.40e-12 69.7
MsG0680035493.01.T01 MTR_7g102920 47.619 105 53 1 467 569 15 119 8.93e-28 108
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680035493.01.T01 AT3G26020 56.314 586 186 8 1 573 1 529 0.0 625
MsG0680035493.01.T01 AT3G26020 54.717 583 183 8 1 573 1 512 0.0 600
MsG0680035493.01.T01 AT3G26020 54.717 583 183 8 1 573 1 512 0.0 600
MsG0680035493.01.T01 AT3G26020 54.717 583 183 8 1 573 1 512 0.0 600
MsG0680035493.01.T01 AT4G15415 65.661 431 141 2 1 429 1 426 0.0 583
MsG0680035493.01.T01 AT4G15415 68.983 403 118 2 1 401 1 398 0.0 578
MsG0680035493.01.T01 AT4G15415 56.557 122 52 1 473 594 398 518 2.86e-38 148
MsG0680035493.01.T01 AT4G15415 68.983 403 118 2 1 401 1 398 0.0 578
MsG0680035493.01.T01 AT4G15415 56.557 122 52 1 473 594 398 518 2.86e-38 148
MsG0680035493.01.T01 AT4G15415 68.983 403 118 2 1 401 1 398 0.0 578
MsG0680035493.01.T01 AT4G15415 56.557 122 52 1 473 594 398 518 2.86e-38 148
MsG0680035493.01.T01 AT4G15415 68.983 403 118 2 1 401 1 398 0.0 578
MsG0680035493.01.T01 AT4G15415 56.557 122 52 1 473 594 398 518 2.86e-38 148
MsG0680035493.01.T01 AT3G21650 67.523 428 103 5 1 401 1 419 0.0 578
MsG0680035493.01.T01 AT3G21650 58.036 112 45 2 473 583 419 529 6.13e-35 139
MsG0680035493.01.T01 AT3G21650 67.523 428 103 5 1 401 1 419 0.0 578
MsG0680035493.01.T01 AT3G21650 58.036 112 45 2 473 583 419 529 6.13e-35 139
MsG0680035493.01.T01 AT3G26020 68.127 411 120 2 1 401 1 410 0.0 572
MsG0680035493.01.T01 AT3G26020 68.127 411 120 2 1 401 1 410 0.0 572
MsG0680035493.01.T01 AT3G26020 68.127 411 120 2 1 401 1 410 0.0 572
MsG0680035493.01.T01 AT3G26020 68.127 411 120 2 1 401 1 410 0.0 572
MsG0680035493.01.T01 AT1G13460 71.547 362 97 1 40 401 34 389 0.0 561
MsG0680035493.01.T01 AT1G13460 64.646 99 35 0 473 571 389 487 1.89e-37 145
MsG0680035493.01.T01 AT1G13460 71.547 362 97 1 40 401 34 389 0.0 561
MsG0680035493.01.T01 AT1G13460 64.646 99 35 0 473 571 389 487 1.89e-37 145
MsG0680035493.01.T01 AT3G09880 51.543 551 188 5 24 569 8 484 0.0 523
MsG0680035493.01.T01 AT3G26030 60.494 405 128 6 1 401 1 377 1.17e-170 494
MsG0680035493.01.T01 AT3G26030 60.000 95 38 0 473 567 377 471 5.21e-33 132
MsG0680035493.01.T01 AT5G03470 59.901 404 143 3 1 401 1 388 1.04e-164 479
MsG0680035493.01.T01 AT5G03470 47.872 94 49 0 473 566 388 481 9.26e-26 111
MsG0680035493.01.T01 AT5G25510 55.112 401 162 4 1 401 1 383 1.34e-150 443
MsG0680035493.01.T01 AT5G25510 48.718 117 59 1 473 588 383 499 1.04e-27 117
MsG0680035493.01.T01 AT3G54930 53.989 376 154 2 28 401 39 397 3.78e-136 403
MsG0680035493.01.T01 AT3G54930 53.989 376 154 2 28 401 39 397 4.01e-135 404
MsG0680035493.01.T01 AT3G54930 48.980 98 50 0 473 570 397 494 5.54e-25 109
MsG0680035493.01.T01 AT3G54930 53.989 376 154 2 28 401 39 397 4.01e-135 404
MsG0680035493.01.T01 AT3G54930 48.980 98 50 0 473 570 397 494 5.54e-25 109

Find 122 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAGAACTCTTAGAAATTT+TGG 0.031274 6:-106748402 MsG0680035493.01.T01:CDS
TCTGATACAATCTTAAAATT+TGG 0.102152 6:+106746173 None:intergenic
CGCTTCATCTTCTCTGAATT+TGG 0.135562 6:+106744502 None:intergenic
TCGAATATACGGCAAATTTA+TGG 0.194695 6:-106748504 MsG0680035493.01.T01:CDS
CCAGAAGTTGAATGAGTTCT+TGG 0.203437 6:+106744380 None:intergenic
TCAACTGCTTCATCCATTTC+AGG 0.207746 6:-106749109 MsG0680035493.01.T01:CDS
TGCTCAAGCAACGTCTTATT+TGG 0.215041 6:+106748078 None:intergenic
CGGAGAGGGCTTTGTTCTTA+TGG 0.229111 6:-106744703 MsG0680035493.01.T01:CDS
TCTAAGGAGGTTATGTTCTT+AGG 0.235934 6:-106748170 MsG0680035493.01.T01:CDS
CTTGAGCAGTTCGCATTTCC+AGG 0.240710 6:-106748063 MsG0680035493.01.T01:CDS
TTGTGTATGAACTTCTTCTT+AGG 0.244523 6:-106748658 MsG0680035493.01.T01:CDS
TCCTATAGTCTTACCTGCTT+TGG 0.258535 6:-106744630 MsG0680035493.01.T01:CDS
TGCAATGCCATTGTGTTTCT+CGG 0.268196 6:+106748421 None:intergenic
GCCGATTTCGATCCCTTCTT+AGG 0.272189 6:+106749214 None:intergenic
CCAAGAACTCATTCAACTTC+TGG 0.285429 6:-106744380 MsG0680035493.01.T01:CDS
GATTCTTGAAGCCTTTGATA+TGG 0.292604 6:-106748726 MsG0680035493.01.T01:CDS
CTGATACAATCTTAAAATTT+GGG 0.294462 6:+106746174 None:intergenic
CGCTATTGGGCATGGGGTAG+GGG 0.295259 6:-106746133 MsG0680035493.01.T01:CDS
TGCAATCAACGAACCAGTTT+TGG 0.299534 6:-106744408 MsG0680035493.01.T01:CDS
GGTAGTTTGTCAGCTTCTTA+TGG 0.300351 6:-106749016 MsG0680035493.01.T01:CDS
TATCATTGGTCACCCGCTAT+TGG 0.302593 6:-106746147 MsG0680035493.01.T01:CDS
TTCGGCTAATGGCAAGTTTA+CGG 0.305424 6:-106748828 MsG0680035493.01.T01:CDS
CCGCTATTGGGCATGGGGTA+GGG 0.309394 6:-106746134 MsG0680035493.01.T01:CDS
TATCTACTCAAGTATGAGTT+TGG 0.317421 6:-106745923 MsG0680035493.01.T01:CDS
GATTATGTTTCTTCGGCTAA+TGG 0.321853 6:-106748839 MsG0680035493.01.T01:CDS
TCCTTAGAACTATTCGTTAT+CGG 0.321886 6:+106748185 None:intergenic
GTGGAAGCGCTTGGAAGAAA+TGG 0.343081 6:-106744444 MsG0680035493.01.T01:CDS
AACTTTCTTATAAATAAATT+CGG 0.345450 6:+106748953 None:intergenic
TACGCGGATTATTGAAATAC+TGG 0.351788 6:-106748208 MsG0680035493.01.T01:CDS
TGAGTTTGGAGTAAGCTTAT+TGG 0.354712 6:-106745909 MsG0680035493.01.T01:CDS
ATTAGAATCAACACCTGAAA+TGG 0.355742 6:+106749096 None:intergenic
AAATTCGGCTTCTCCGAATT+CGG 0.357165 6:+106748968 None:intergenic
ACAATCTTAAAATTTGGGTT+TGG 0.379335 6:+106746179 None:intergenic
TTCATTTGTTCTCAGATTGT+TGG 0.381751 6:-106748582 MsG0680035493.01.T01:CDS
ACTTGTGGATTATGTTTCTT+CGG 0.388817 6:-106748846 MsG0680035493.01.T01:CDS
TTACTGCATCACACAGTTTG+TGG 0.393097 6:-106748261 MsG0680035493.01.T01:CDS
TCATACACAATTTGCAAGTA+AGG 0.395495 6:+106748671 None:intergenic
ATCATTGGTCACCCGCTATT+GGG 0.398156 6:-106746146 MsG0680035493.01.T01:CDS
CCCGCTATTGGGCATGGGGT+AGG 0.399446 6:-106746135 MsG0680035493.01.T01:CDS
ACAGTTCTTCATCGAATATA+CGG 0.403419 6:-106748515 MsG0680035493.01.T01:CDS
TGATACATCGGTATGCATTT+CGG 0.403855 6:+106748296 None:intergenic
GCTAACTTTGCATCGGTCTC+AGG 0.406016 6:+106748623 None:intergenic
GTTGATTCTAATTCGAGTAT+TGG 0.407662 6:-106749085 MsG0680035493.01.T01:CDS
ACCTAAGAAGGGATCGAAAT+CGG 0.416991 6:-106749215 MsG0680035493.01.T01:CDS
GGCGGCAAGTAGGCCTCAAT+TGG 0.423903 6:-106744354 MsG0680035493.01.T01:CDS
TAGGATCCTCTGAATCAAAA+AGG 0.434877 6:+106748558 None:intergenic
GCAGTTCGCATTTCCAGGTC+TGG 0.436117 6:-106748058 MsG0680035493.01.T01:intron
AATAATGAAGGAGGAGGAGG+AGG 0.442207 6:-106749187 MsG0680035493.01.T01:CDS
GCCGATAACGAATAGTTCTA+AGG 0.444394 6:-106748186 MsG0680035493.01.T01:CDS
TGGTCACCCGCTATTGGGCA+TGG 0.446287 6:-106746141 MsG0680035493.01.T01:CDS
AAACGTCAGCAAGATCTTCT+CGG 0.446671 6:-106744558 MsG0680035493.01.T01:CDS
TGCTCAAGCAGATATTAAAT+AGG 0.447685 6:-106749240 MsG0680035493.01.T01:CDS
AGGAGAGCTTGAGGAAGTCT+TGG 0.447799 6:-106748150 MsG0680035493.01.T01:CDS
ATTAAATAGGATACCTAAGA+AGG 0.447907 6:-106749227 MsG0680035493.01.T01:CDS
AGCAAAATGCACGGAGCCAC+TGG 0.449006 6:-106744607 MsG0680035493.01.T01:CDS
TTCTTCCAAGCGCTTCCACC+TGG 0.450283 6:+106744448 None:intergenic
GTTCTTGGAGAAACCAAAAC+TGG 0.462358 6:+106744395 None:intergenic
TATTGGGCATGGGGTAGGGG+TGG 0.463692 6:-106746130 MsG0680035493.01.T01:CDS
TGACGTTTATTGTCAAGCTT+CGG 0.466697 6:+106744573 None:intergenic
TTCGAAGAACATCAAAGAAA+AGG 0.473524 6:-106748894 MsG0680035493.01.T01:CDS
GAAAATAATGAAGGAGGAGG+AGG 0.475886 6:-106749190 MsG0680035493.01.T01:CDS
AACAGTGTAAGAAGCAGTTA+TGG 0.475929 6:-106749136 MsG0680035493.01.T01:CDS
ATTTGCAAGTAAGGCCATGC+AGG 0.476606 6:+106748680 None:intergenic
AAGAGTCTCATCTTACAAAC+CGG 0.481713 6:-106746103 MsG0680035493.01.T01:intron
TCCAAAGCAGGTAAGACTAT+AGG 0.488189 6:+106744629 None:intergenic
GGTCACCCGCTATTGGGCAT+GGG 0.488305 6:-106746140 MsG0680035493.01.T01:CDS
ATTGTATCAGAGTCTATCAT+TGG 0.489809 6:-106746161 MsG0680035493.01.T01:CDS
TTTCTTTGATGTTCTTCGAA+GGG 0.490593 6:+106748897 None:intergenic
GGCCATGCAGGGTCCATTGA+AGG 0.490968 6:+106748692 None:intergenic
TTTCTACGAAATGCAAAGAA+TGG 0.497542 6:-106745849 MsG0680035493.01.T01:intron
TTCGGAACGTCACGAAAACT+CGG 0.504048 6:+106748986 None:intergenic
TGGAAGCGCTTGGAAGAAAT+GGG 0.506396 6:-106744443 MsG0680035493.01.T01:CDS
AGAAGCCAGGTGGAAGCGCT+TGG 0.507285 6:-106744453 MsG0680035493.01.T01:CDS
TTGTCAAGCTTCGGACGGCT+TGG 0.511126 6:+106744582 None:intergenic
ATACATTTCTGAAACTCTGC+AGG 0.519757 6:+106748116 None:intergenic
TTCGGACGGCTTGGTTCCAG+TGG 0.524027 6:+106744591 None:intergenic
TCAAGCAACGTCTTATTTGG+CGG 0.529422 6:+106748081 None:intergenic
AACTCATTCAACTTCTGGTA+AGG 0.533066 6:-106744375 MsG0680035493.01.T01:CDS
GGATGAAGAAGAGCCTTCAA+TGG 0.533922 6:-106748705 MsG0680035493.01.T01:CDS
GAATTTGCAGGTAGCGGAGA+GGG 0.534974 6:-106744717 MsG0680035493.01.T01:intron
ACAAACACTTGTCGAACTTG+TGG 0.536221 6:-106748861 MsG0680035493.01.T01:CDS
CCTACCCCATGCCCAATAGC+GGG 0.544828 6:+106746135 None:intergenic
CTCTTCTTCATCCATATCAA+AGG 0.545730 6:+106748715 None:intergenic
TGCAGAGTTTCAGAAATGTA+TGG 0.550256 6:-106748114 MsG0680035493.01.T01:CDS
TTCAAGGATCAATCCAATTG+AGG 0.551028 6:+106744341 None:intergenic
ATGCATTTCGGTTTATGAAG+AGG 0.551411 6:+106748308 None:intergenic
ACTAATAGATTTACCAGACC+TGG 0.551432 6:+106748045 None:intergenic
TGAAGTCAAAACAAGAAGCC+AGG 0.557839 6:-106744466 MsG0680035493.01.T01:CDS
AGCCTTCAATGGACCCTGCA+TGG 0.559891 6:-106748694 MsG0680035493.01.T01:CDS
ATGCACTCCTCGTAGAATGC+AGG 0.566412 6:+106744527 None:intergenic
AGCTTGTGCTCTTCTTTCAG+TGG 0.566763 6:+106748353 None:intergenic
TTCAAGTAATCCCTCTCTCT+AGG 0.567697 6:+106748539 None:intergenic
TCAAGAATCTTGTTCTTGCG+AGG 0.571690 6:+106748740 None:intergenic
GATTCTAATTCGAGTATTGG+AGG 0.573707 6:-106749082 MsG0680035493.01.T01:CDS
TTCAGAGGATCCTAGAGAGA+GGG 0.575462 6:-106748549 MsG0680035493.01.T01:CDS
CCCTACCCCATGCCCAATAG+CGG 0.588204 6:+106746134 None:intergenic
AAATCGGCGGAAAATAATGA+AGG 0.589197 6:-106749199 MsG0680035493.01.T01:CDS
GTCACCCGCTATTGGGCATG+GGG 0.589367 6:-106746139 MsG0680035493.01.T01:CDS
TATGTTCTTAGGAGAGCTTG+AGG 0.590882 6:-106748159 MsG0680035493.01.T01:CDS
CTTCTGGTAAGGCGGCAAGT+AGG 0.600779 6:-106744364 MsG0680035493.01.T01:CDS
AGAATCTTGTTCTTGCGAGG+TGG 0.601131 6:+106748743 None:intergenic
GCGGAAAATAATGAAGGAGG+AGG 0.607722 6:-106749193 MsG0680035493.01.T01:CDS
TTAAATAGGATACCTAAGAA+GGG 0.617716 6:-106749226 MsG0680035493.01.T01:CDS
AATTCAAAATTAAATCTGAA+CGG 0.618131 6:-106749037 MsG0680035493.01.T01:CDS
ACGGAACAAATTTATTGACA+CGG 0.619498 6:+106748778 None:intergenic
GAGGTGGAGTAGTCAATGTA+CGG 0.622680 6:+106748759 None:intergenic
ATTCAGAGGATCCTAGAGAG+AGG 0.623951 6:-106748550 MsG0680035493.01.T01:CDS
GATAACTGCTGGTGATACAT+CGG 0.626424 6:+106748284 None:intergenic
CTGCTTTGGAGCAAAATGCA+CGG 0.629092 6:-106744616 MsG0680035493.01.T01:CDS
TTTGAAACCGAGAAACACAA+TGG 0.629712 6:-106748428 MsG0680035493.01.T01:CDS
TCATTCAACTTCTGGTAAGG+CGG 0.636487 6:-106744372 MsG0680035493.01.T01:CDS
GTTTATTGTCAAGCTTCGGA+CGG 0.637653 6:+106744577 None:intergenic
TTTGCAAGTAAGGCCATGCA+GGG 0.637736 6:+106748681 None:intergenic
TGATGCAGTAAGATAACTGC+TGG 0.645298 6:+106748273 None:intergenic
CTTGCTGATACGATTATACG+CGG 0.666213 6:-106748224 MsG0680035493.01.T01:CDS
CACTGATCCTGCATTCTACG+AGG 0.670410 6:-106744534 MsG0680035493.01.T01:CDS
TGAATTTGCAGGTAGCGGAG+AGG 0.675624 6:-106744718 MsG0680035493.01.T01:intron
GATAACGAATAGTTCTAAGG+AGG 0.676971 6:-106748183 MsG0680035493.01.T01:CDS
TCGGCGGAAAATAATGAAGG+AGG 0.683812 6:-106749196 MsG0680035493.01.T01:CDS
AGTCAAAACAAGAAGCCAGG+TGG 0.689319 6:-106744463 MsG0680035493.01.T01:CDS
AAGCGCTTGGAAGAAATGGG+AGG 0.713502 6:-106744440 MsG0680035493.01.T01:CDS
TAAGAAGGGATCGAAATCGG+CGG 0.721098 6:-106749212 MsG0680035493.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTTTCTTATAAATAAATT+CGG + Chr6:106744640-106744659 None:intergenic 10.0%
!! AATTTATGTTTGAAAATTTA+TGG - Chr6:106745978-106745997 MsG0680035493.01.T01:intron 10.0%
!! GATTAATGTAAAATAAAATA+AGG - Chr6:106746615-106746634 MsG0680035493.01.T01:intron 10.0%
!!! AAAATTTTGTGATAAAAAAT+CGG - Chr6:106747136-106747155 MsG0680035493.01.T01:intron 10.0%
!!! TTTTTTTTTTACATCAAATA+GGG - Chr6:106748099-106748118 MsG0680035493.01.T01:CDS 10.0%
!!! TTTTTTTTTTTACATCAAAT+AGG - Chr6:106748098-106748117 MsG0680035493.01.T01:CDS 10.0%
!! AATTCAAAATTAAATCTGAA+CGG - Chr6:106744553-106744572 MsG0680035493.01.T01:CDS 15.0%
!! AGGATTTATAGAATATTTAA+AGG - Chr6:106747103-106747122 MsG0680035493.01.T01:intron 15.0%
!! TTAACAAAAATCAAGTTAAA+GGG + Chr6:106748418-106748437 None:intergenic 15.0%
!!! AAATTTTGTGATAAAAAATC+GGG - Chr6:106747137-106747156 MsG0680035493.01.T01:intron 15.0%
!!! GTTTTGTAAAATTATACAAT+AGG - Chr6:106746593-106746612 MsG0680035493.01.T01:intron 15.0%
!!! TCTAAATTTTATATGAACAT+TGG - Chr6:106746128-106746147 MsG0680035493.01.T01:CDS 15.0%
!!! TTTTTTTTCCTAAATTTTCA+AGG + Chr6:106748752-106748771 None:intergenic 15.0%
!! AAAGAAAGGAAAAAAACTAT+AGG + Chr6:106747228-106747247 None:intergenic 20.0%
!! AAGAAAGGAAAAAAACTATA+GGG + Chr6:106747227-106747246 None:intergenic 20.0%
!! AGACTATATATAATCAAATG+TGG + Chr6:106747317-106747336 None:intergenic 20.0%
!! AGATTACAAGAATAAAGTTA+TGG + Chr6:106748831-106748850 None:intergenic 20.0%
!! CTGATACAATCTTAAAATTT+GGG + Chr6:106747419-106747438 None:intergenic 20.0%
!! GACTATATATAATCAAATGT+GGG + Chr6:106747316-106747335 None:intergenic 20.0%
!! GTTAACAAAAATCAAGTTAA+AGG + Chr6:106748419-106748438 None:intergenic 20.0%
!! TAACAAAAATCAAGTTAAAG+GGG + Chr6:106748417-106748436 None:intergenic 20.0%
!! TCTGATACAATCTTAAAATT+TGG + Chr6:106747420-106747439 None:intergenic 20.0%
!!! AACTAATTAGTCAAATTTTC+AGG + Chr6:106747804-106747823 None:intergenic 20.0%
!!! AATGGTTTCATTTATTTTCA+AGG + Chr6:106748708-106748727 None:intergenic 20.0%
!!! AATTTTGTGATAAAAAATCG+GGG - Chr6:106747138-106747157 MsG0680035493.01.T01:intron 20.0%
!!! ACAAAGTATTCAAACTATTA+AGG + Chr6:106747601-106747620 None:intergenic 20.0%
!!! ACATGTTTTCATTTTCTAAA+TGG + Chr6:106748726-106748745 None:intergenic 20.0%
!!! TCTGAAAATTTGTTTATAAG+TGG - Chr6:106747334-106747353 MsG0680035493.01.T01:intron 20.0%
!!! TTTTATATGAACATTGGTTT+TGG - Chr6:106746134-106746153 MsG0680035493.01.T01:CDS 20.0%
!!! TTTTCCTTTCTTTTTCATTT+GGG - Chr6:106747235-106747254 MsG0680035493.01.T01:intron 20.0%
!!! TTTTTCCTTTCTTTTTCATT+TGG - Chr6:106747234-106747253 MsG0680035493.01.T01:intron 20.0%
! AAAATACATCATTTCCAGAA+TGG - Chr6:106747866-106747885 MsG0680035493.01.T01:intron 25.0%
! ACTTCTATATACTTGTGTAA+TGG + Chr6:106746473-106746492 None:intergenic 25.0%
! ATCACATAACTACTATAAAG+AGG + Chr6:106748320-106748339 None:intergenic 25.0%
! ATCGGGAAAATAATATACAT+TGG - Chr6:106746957-106746976 MsG0680035493.01.T01:intron 25.0%
! ATTAAATAGGATACCTAAGA+AGG - Chr6:106744363-106744382 MsG0680035493.01.T01:CDS 25.0%
! TATAAGCTGTAATAGTCATT+TGG - Chr6:106746558-106746577 MsG0680035493.01.T01:intron 25.0%
! TATCAGCTGAAAATATTTGA+AGG - Chr6:106747083-106747102 MsG0680035493.01.T01:intron 25.0%
! TATTTGATTAATAAGAAGCG+TGG - Chr6:106745803-106745822 MsG0680035493.01.T01:intron 25.0%
! TCACATAACTACTATAAAGA+GGG + Chr6:106748319-106748338 None:intergenic 25.0%
! TCTCTCTTCAATACATTTAT+TGG - Chr6:106746707-106746726 MsG0680035493.01.T01:intron 25.0%
! TGTCATTAAACATGAGAAAT+AGG - Chr6:106745740-106745759 MsG0680035493.01.T01:intron 25.0%
! TTAAATAGGATACCTAAGAA+GGG - Chr6:106744364-106744383 MsG0680035493.01.T01:CDS 25.0%
! TTAACCCAAATGAAAAAGAA+AGG + Chr6:106747242-106747261 None:intergenic 25.0%
!! ACAATCTTAAAATTTGGGTT+TGG + Chr6:106747414-106747433 None:intergenic 25.0%
!! GAGAGTTTTTACATGATAAA+TGG - Chr6:106748461-106748480 MsG0680035493.01.T01:CDS 25.0%
!! TCAAATATTTTCAGCTGATA+TGG + Chr6:106747083-106747102 None:intergenic 25.0%
!!! AGTTATACTGATTTTTGTGT+GGG - Chr6:106746210-106746229 MsG0680035493.01.T01:intron 25.0%
!!! ATTTTGGGAAGTATAATCAA+CGG - Chr6:106745204-106745223 MsG0680035493.01.T01:intron 25.0%
!!! TAGTTATACTGATTTTTGTG+TGG - Chr6:106746209-106746228 MsG0680035493.01.T01:intron 25.0%
AAAATGCATGAGTAAATAGC+AGG + Chr6:106746777-106746796 None:intergenic 30.0%
ACAGTTCTTCATCGAATATA+CGG - Chr6:106745075-106745094 MsG0680035493.01.T01:intron 30.0%
ACATAACTACTATAAAGAGG+GGG + Chr6:106748317-106748336 None:intergenic 30.0%
ACGGAACAAATTTATTGACA+CGG + Chr6:106744815-106744834 None:intergenic 30.0%
ATAGTAGTTATGTGATCTGA+GGG - Chr6:106748324-106748343 MsG0680035493.01.T01:CDS 30.0%
ATAGTCAGTTTGGATCATAT+TGG - Chr6:106747526-106747545 MsG0680035493.01.T01:intron 30.0%
ATGACAATGATTGTGTTTCT+AGG + Chr6:106748137-106748156 None:intergenic 30.0%
ATGACACAACAACACAAAAA+AGG + Chr6:106745726-106745745 None:intergenic 30.0%
ATGTCAAATAGCAGCTATAA+AGG + Chr6:106746400-106746419 None:intergenic 30.0%
ATTAGAATCAACACCTGAAA+TGG + Chr6:106744497-106744516 None:intergenic 30.0%
ATTATTGACAACACTTACAC+TGG - Chr6:106745635-106745654 MsG0680035493.01.T01:intron 30.0%
ATTGTATCAGAGTCTATCAT+TGG - Chr6:106747429-106747448 MsG0680035493.01.T01:intron 30.0%
CACATAACTACTATAAAGAG+GGG + Chr6:106748318-106748337 None:intergenic 30.0%
CATGTCTTCCTTGAAAATTT+AGG - Chr6:106748741-106748760 MsG0680035493.01.T01:CDS 30.0%
CTATGATGCATTATTCTGTA+TGG - Chr6:106748793-106748812 MsG0680035493.01.T01:CDS 30.0%
GATTCACATAGATATTGCAT+TGG - Chr6:106746243-106746262 MsG0680035493.01.T01:intron 30.0%
GGGAAAATAATATACATTGG+AGG - Chr6:106746960-106746979 MsG0680035493.01.T01:intron 30.0%
GTTTATAAGTGGAAACTAGA+CGG - Chr6:106747345-106747364 MsG0680035493.01.T01:intron 30.0%
TATAGTAGTTATGTGATCTG+AGG - Chr6:106748323-106748342 MsG0680035493.01.T01:CDS 30.0%
TATCTACTCAAGTATGAGTT+TGG - Chr6:106747667-106747686 MsG0680035493.01.T01:intron 30.0%
TATCTAGAAAGAACACAAAC+CGG + Chr6:106747509-106747528 None:intergenic 30.0%
TCATACACAATTTGCAAGTA+AGG + Chr6:106744922-106744941 None:intergenic 30.0%
TCCTTAGAACTATTCGTTAT+CGG + Chr6:106745408-106745427 None:intergenic 30.0%
TCGAATATACGGCAAATTTA+TGG - Chr6:106745086-106745105 MsG0680035493.01.T01:intron 30.0%
TCTCGGTTTCAAAAATGAAT+CGG + Chr6:106745155-106745174 None:intergenic 30.0%
TGCTCAAGCAGATATTAAAT+AGG - Chr6:106744350-106744369 MsG0680035493.01.T01:CDS 30.0%
TTAATTGCATCTGAATTTGC+AGG - Chr6:106748861-106748880 MsG0680035493.01.T01:CDS 30.0%
TTCATTTGTTCTCAGATTGT+TGG - Chr6:106745008-106745027 MsG0680035493.01.T01:intron 30.0%
TTCGAAGAACATCAAAGAAA+AGG - Chr6:106744696-106744715 MsG0680035493.01.T01:CDS 30.0%
TTCTTTCTAGATAGTCAGTT+TGG - Chr6:106747516-106747535 MsG0680035493.01.T01:intron 30.0%
TTGTGTATGAACTTCTTCTT+AGG - Chr6:106744932-106744951 MsG0680035493.01.T01:intron 30.0%
TTTCTACGAAATGCAAAGAA+TGG - Chr6:106747741-106747760 MsG0680035493.01.T01:intron 30.0%
TTTCTTTGATGTTCTTCGAA+GGG + Chr6:106744696-106744715 None:intergenic 30.0%
TTTGTTAACATCTCCTTATG+TGG - Chr6:106748430-106748449 MsG0680035493.01.T01:CDS 30.0%
! ACAAGGAAAACCATTTTGTA+GGG - Chr6:106747378-106747397 MsG0680035493.01.T01:intron 30.0%
! ACTTGTGGATTATGTTTCTT+CGG - Chr6:106744744-106744763 MsG0680035493.01.T01:intron 30.0%
! ATTGTCATTTGTCACCTTAT+TGG - Chr6:106748149-106748168 MsG0680035493.01.T01:CDS 30.0%
! CAAATATTGTTTTCTGTACC+AGG + Chr6:106748652-106748671 None:intergenic 30.0%
! GCAGAACTCTTAGAAATTTT+GGG - Chr6:106745189-106745208 MsG0680035493.01.T01:intron 30.0%
! GTTGATTCTAATTCGAGTAT+TGG - Chr6:106744505-106744524 MsG0680035493.01.T01:CDS 30.0%
! GTTTAAGACTGAAGAGTTTA+AGG + Chr6:106747274-106747293 None:intergenic 30.0%
! TACAAGGAAAACCATTTTGT+AGG - Chr6:106747377-106747396 MsG0680035493.01.T01:intron 30.0%
! TGCAGAACTCTTAGAAATTT+TGG - Chr6:106745188-106745207 MsG0680035493.01.T01:intron 30.0%
! TTTTCTTTGATGTTCTTCGA+AGG + Chr6:106744697-106744716 None:intergenic 30.0%
!! AAAGGTGTTATAGTAATGAC+TGG + Chr6:106746382-106746401 None:intergenic 30.0%
!! ATGCTGTTTACAATGTTTTG+TGG - Chr6:106746032-106746051 MsG0680035493.01.T01:intron 30.0%
!! GAACTCTTTTTCTACTTTTC+TGG - Chr6:106746064-106746083 MsG0680035493.01.T01:intron 30.0%
!! TGGACAACGGAATTTTAAAA+AGG + Chr6:106748628-106748647 None:intergenic 30.0%
!! TTCATTTAGCTTTGATCCAA+TGG - Chr6:106747970-106747989 MsG0680035493.01.T01:intron 30.0%
!! TTGATTGCTTTTCTGATGAA+CGG + Chr6:106745120-106745139 None:intergenic 30.0%
!!! GATATTTTGATGCCAAAGTA+AGG - Chr6:106748252-106748271 MsG0680035493.01.T01:CDS 30.0%
!!! GCATGCTACATTCTTATTTT+TGG - Chr6:106747711-106747730 MsG0680035493.01.T01:intron 30.0%
!!! GCTACATTCTTATTTTTGGA+AGG - Chr6:106747715-106747734 MsG0680035493.01.T01:intron 30.0%
!!! GTTATACTGATTTTTGTGTG+GGG - Chr6:106746211-106746230 MsG0680035493.01.T01:intron 30.0%
!!! TTACTTTTAAAACCTCACTC+AGG - Chr6:106746644-106746663 MsG0680035493.01.T01:intron 30.0%
AAATCAAATAGACCCTATCG+TGG + Chr6:106748065-106748084 None:intergenic 35.0%
AAATCGGCGGAAAATAATGA+AGG - Chr6:106744391-106744410 MsG0680035493.01.T01:CDS 35.0%
AAATGGAAGTTGAACCTCAT+AGG - Chr6:106748478-106748497 MsG0680035493.01.T01:CDS 35.0%
AACAGTGTAAGAAGCAGTTA+TGG - Chr6:106744454-106744473 MsG0680035493.01.T01:CDS 35.0%
AACTCAGATTCATGAAGAGA+TGG + Chr6:106748589-106748608 None:intergenic 35.0%
AACTCATTCAACTTCTGGTA+AGG - Chr6:106749215-106749234 MsG0680035493.01.T01:CDS 35.0%
AACTGAAGATATGCAAGATC+AGG + Chr6:106746826-106746845 None:intergenic 35.0%
AAGAGTCTCATCTTACAAAC+CGG - Chr6:106747487-106747506 MsG0680035493.01.T01:intron 35.0%
AAGAGTGAAAATGTAGGACT+TGG + Chr6:106748037-106748056 None:intergenic 35.0%
ACATGTCACATATCCACATT+AGG - Chr6:106748383-106748402 MsG0680035493.01.T01:CDS 35.0%
ACATTGGAGGAATCATGTTT+AGG - Chr6:106746973-106746992 MsG0680035493.01.T01:intron 35.0%
ACTAATAGATTTACCAGACC+TGG + Chr6:106745548-106745567 None:intergenic 35.0%
AGGTGAACAACTCATAACTA+TGG - Chr6:106746664-106746683 MsG0680035493.01.T01:intron 35.0%
AGTACATTCCCTGTCATTAT+AGG + Chr6:106748227-106748246 None:intergenic 35.0%
AGTTAAGGATTCAACAAGCT+AGG + Chr6:106748187-106748206 None:intergenic 35.0%
ATGCAAAGAATGGTAACTGT+TGG - Chr6:106747751-106747770 MsG0680035493.01.T01:intron 35.0%
ATGCATTTCGGTTTATGAAG+AGG + Chr6:106745285-106745304 None:intergenic 35.0%
ATTAGTCAAAACCCCACAAT+TGG + Chr6:106747201-106747220 None:intergenic 35.0%
CTCACTCTTAAACCTTACTT+TGG + Chr6:106748267-106748286 None:intergenic 35.0%
CTCTTCTTCATCCATATCAA+AGG + Chr6:106744878-106744897 None:intergenic 35.0%
CTTAAGATTCCTGAAAAGGA+AGG - Chr6:106746921-106746940 MsG0680035493.01.T01:intron 35.0%
CTTAAGTGGCATATTCTGAT+TGG - Chr6:106748352-106748371 MsG0680035493.01.T01:CDS 35.0%
GACGATAAGAGTGAAAATGT+AGG + Chr6:106748043-106748062 None:intergenic 35.0%
GATTATGTTTCTTCGGCTAA+TGG - Chr6:106744751-106744770 MsG0680035493.01.T01:intron 35.0%
GATTCTTGAAGCCTTTGATA+TGG - Chr6:106744864-106744883 MsG0680035493.01.T01:intron 35.0%
GCACTTGTAATCATTTCCTT+TGG - Chr6:106747044-106747063 MsG0680035493.01.T01:intron 35.0%
GGAAGGATTCATTACCAATA+AGG + Chr6:106748166-106748185 None:intergenic 35.0%
GTACATTCCCTGTCATTATA+GGG + Chr6:106748226-106748245 None:intergenic 35.0%
GTCACTTAAGATTCCTGAAA+AGG - Chr6:106746917-106746936 MsG0680035493.01.T01:intron 35.0%
GTGTAAGTGAGTGAAATCTT+TGG + Chr6:106747834-106747853 None:intergenic 35.0%
TACATTCCCTGTCATTATAG+GGG + Chr6:106748225-106748244 None:intergenic 35.0%
TACTGAACTTCTCCAATTGT+GGG - Chr6:106747186-106747205 MsG0680035493.01.T01:intron 35.0%
TAGGATCCTCTGAATCAAAA+AGG + Chr6:106745035-106745054 None:intergenic 35.0%
TATAACTACACTCAAGACTC+AGG + Chr6:106746197-106746216 None:intergenic 35.0%
TCTAAGGAGGTTATGTTCTT+AGG - Chr6:106745420-106745439 MsG0680035493.01.T01:intron 35.0%
TGACGTTTATTGTCAAGCTT+CGG + Chr6:106749020-106749039 None:intergenic 35.0%
TGATACATCGGTATGCATTT+CGG + Chr6:106745297-106745316 None:intergenic 35.0%
TGCAGAGTTTCAGAAATGTA+TGG - Chr6:106745476-106745495 MsG0680035493.01.T01:intron 35.0%
! ATGGTTTTCCTTGTAAAGTG+AGG + Chr6:106747372-106747391 None:intergenic 35.0%
! CAATCAGAATATGCCACTTA+AGG + Chr6:106748354-106748373 None:intergenic 35.0%
! CAATGTTTTGTGGTCTTCTA+TGG - Chr6:106746042-106746061 MsG0680035493.01.T01:intron 35.0%
! GAATTTTGAACTTCGACTCA+AGG + Chr6:106747953-106747972 None:intergenic 35.0%
! TACGCGGATTATTGAAATAC+TGG - Chr6:106745382-106745401 MsG0680035493.01.T01:intron 35.0%
! TATTGTTTTCTGTACCAGGA+TGG + Chr6:106748648-106748667 None:intergenic 35.0%
! TCTTTTCGCTAACTTTGCAT+CGG + Chr6:106744977-106744996 None:intergenic 35.0%
! TGAATTTGATGATCCACTGA+AGG + Chr6:106746538-106746557 None:intergenic 35.0%
! TGAGTTTGGAGTAAGCTTAT+TGG - Chr6:106747681-106747700 MsG0680035493.01.T01:intron 35.0%
! TTTGAAACCGAGAAACACAA+TGG - Chr6:106745162-106745181 MsG0680035493.01.T01:intron 35.0%
!! ATACATTTCTGAAACTCTGC+AGG + Chr6:106745477-106745496 None:intergenic 35.0%
!! GATAACGAATAGTTCTAAGG+AGG - Chr6:106745407-106745426 MsG0680035493.01.T01:intron 35.0%
!! GATTCTAATTCGAGTATTGG+AGG - Chr6:106744508-106744527 MsG0680035493.01.T01:CDS 35.0%
!!! AATTGTGGGGTTTTGACTAA+TGG - Chr6:106747200-106747219 MsG0680035493.01.T01:intron 35.0%
AAACGTCAGCAAGATCTTCT+CGG - Chr6:106749032-106749051 MsG0680035493.01.T01:CDS 40.0%
AAATTCGGCTTCTCCGAATT+CGG + Chr6:106744625-106744644 None:intergenic 40.0%
AAGAGTGAGAATACGTGGAT+GGG - Chr6:106748278-106748297 MsG0680035493.01.T01:CDS 40.0%
AAGGATTCAACAAGCTAGGA+AGG + Chr6:106748183-106748202 None:intergenic 40.0%
ACAAACACTTGTCGAACTTG+TGG - Chr6:106744729-106744748 MsG0680035493.01.T01:intron 40.0%
ACACACACCAAAACCAATGT+TGG + Chr6:106746105-106746124 None:intergenic 40.0%
ACATGAGAAATAGGCATCAG+TGG - Chr6:106745749-106745768 MsG0680035493.01.T01:intron 40.0%
ACCTAAGAAGGGATCGAAAT+CGG - Chr6:106744375-106744394 MsG0680035493.01.T01:CDS 40.0%
ACTGAACTTCTCCAATTGTG+GGG - Chr6:106747187-106747206 MsG0680035493.01.T01:intron 40.0%
AGCTGGATATGCACTAAACA+CGG + Chr6:106746744-106746763 None:intergenic 40.0%
AGGCTCATTATTTCCACTAG+TGG + Chr6:106747784-106747803 None:intergenic 40.0%
AGGGGAATTTGAACCTAATG+TGG + Chr6:106748399-106748418 None:intergenic 40.0%
ATGCTTCCCCTATAATGACA+GGG - Chr6:106748216-106748235 MsG0680035493.01.T01:CDS 40.0%
CATACAGTCAATGATCCAAG+TGG + Chr6:106746513-106746532 None:intergenic 40.0%
CCAAGAACTCATTCAACTTC+TGG - Chr6:106749210-106749229 MsG0680035493.01.T01:CDS 40.0%
CCAGAAGTTGAATGAGTTCT+TGG + Chr6:106749213-106749232 None:intergenic 40.0%
CCTAACTCAACCCTACAAAA+TGG + Chr6:106747391-106747410 None:intergenic 40.0%
CGCTTCATCTTCTCTGAATT+TGG + Chr6:106749091-106749110 None:intergenic 40.0%
CTCTCAACACTAACCACATA+AGG + Chr6:106748446-106748465 None:intergenic 40.0%
CTTGCTGATACGATTATACG+CGG - Chr6:106745366-106745385 MsG0680035493.01.T01:intron 40.0%
GAAAATAATGAAGGAGGAGG+AGG - Chr6:106744400-106744419 MsG0680035493.01.T01:CDS 40.0%
GATAACTGCTGGTGATACAT+CGG + Chr6:106745309-106745328 None:intergenic 40.0%
GGTTTAAGAGTGAGAATACG+TGG - Chr6:106748273-106748292 MsG0680035493.01.T01:CDS 40.0%
GTACTGAACTTCTCCAATTG+TGG - Chr6:106747185-106747204 MsG0680035493.01.T01:intron 40.0%
GTTCTTGGAGAAACCAAAAC+TGG + Chr6:106749198-106749217 None:intergenic 40.0%
GTTTATTGTCAAGCTTCGGA+CGG + Chr6:106749016-106749035 None:intergenic 40.0%
TAAAATTCCGTTGTCCATCC+TGG - Chr6:106748631-106748650 MsG0680035493.01.T01:CDS 40.0%
TAAGAGTGAGAATACGTGGA+TGG - Chr6:106748277-106748296 MsG0680035493.01.T01:CDS 40.0%
TATGAGCAAAATCTTCTCCC+TGG + Chr6:106746326-106746345 None:intergenic 40.0%
TATGTTCTTAGGAGAGCTTG+AGG - Chr6:106745431-106745450 MsG0680035493.01.T01:intron 40.0%
TCAACTGCTTCATCCATTTC+AGG - Chr6:106744481-106744500 MsG0680035493.01.T01:CDS 40.0%
TCAAGAATCTTGTTCTTGCG+AGG + Chr6:106744853-106744872 None:intergenic 40.0%
TCATTCAACTTCTGGTAAGG+CGG - Chr6:106749218-106749237 MsG0680035493.01.T01:CDS 40.0%
TCCAAAGCAGGTAAGACTAT+AGG + Chr6:106748964-106748983 None:intergenic 40.0%
TGAAGATATGCAAGATCAGG+AGG + Chr6:106746823-106746842 None:intergenic 40.0%
TGAAGTCAAAACAAGAAGCC+AGG - Chr6:106749124-106749143 MsG0680035493.01.T01:CDS 40.0%
TGATGCAGTAAGATAACTGC+TGG + Chr6:106745320-106745339 None:intergenic 40.0%
TGCAATGCCATTGTGTTTCT+CGG + Chr6:106745172-106745191 None:intergenic 40.0%
TTACTGCATCACACAGTTTG+TGG - Chr6:106745329-106745348 MsG0680035493.01.T01:intron 40.0%
TTCAAGTAATCCCTCTCTCT+AGG + Chr6:106745054-106745073 None:intergenic 40.0%
TTCGGCTAATGGCAAGTTTA+CGG - Chr6:106744762-106744781 MsG0680035493.01.T01:intron 40.0%
TTGCTCATACTTCTCCATGT+GGG - Chr6:106746337-106746356 MsG0680035493.01.T01:intron 40.0%
TTTGCTCATACTTCTCCATG+TGG - Chr6:106746336-106746355 MsG0680035493.01.T01:intron 40.0%
! AAGCATCATAGCGGAAGTTA+AGG + Chr6:106748202-106748221 None:intergenic 40.0%
! AAGGTGTTACGTATTGCATC+GGG - Chr6:106746940-106746959 MsG0680035493.01.T01:intron 40.0%
! CCATTTTGTAGGGTTGAGTT+AGG - Chr6:106747388-106747407 MsG0680035493.01.T01:intron 40.0%
! GATTTTCTGAGTGCCAACAT+TGG - Chr6:106746089-106746108 MsG0680035493.01.T01:intron 40.0%
! GCCGATAACGAATAGTTCTA+AGG - Chr6:106745404-106745423 MsG0680035493.01.T01:intron 40.0%
! GGTAGTTTGTCAGCTTCTTA+TGG - Chr6:106744574-106744593 MsG0680035493.01.T01:CDS 40.0%
! TACGTAACACCTTCCTTTTC+AGG + Chr6:106746933-106746952 None:intergenic 40.0%
! TCCTATAGTCTTACCTGCTT+TGG - Chr6:106748960-106748979 MsG0680035493.01.T01:CDS 40.0%
! TGCAATCAACGAACCAGTTT+TGG - Chr6:106749182-106749201 MsG0680035493.01.T01:CDS 40.0%
! TGCTCAAGCAACGTCTTATT+TGG + Chr6:106745515-106745534 None:intergenic 40.0%
! TTTTCGTGACGTTCCGAATT+CGG - Chr6:106744609-106744628 MsG0680035493.01.T01:CDS 40.0%
!! AAAGGCATGACTTGGCTTTT+GGG - Chr6:106748555-106748574 MsG0680035493.01.T01:CDS 40.0%
!! GAAGGTGTTACGTATTGCAT+CGG - Chr6:106746939-106746958 MsG0680035493.01.T01:intron 40.0%
!! GTTGGACCTTTTTGATTCAG+AGG - Chr6:106745026-106745045 MsG0680035493.01.T01:intron 40.0%
!! TAAAGGCATGACTTGGCTTT+TGG - Chr6:106748554-106748573 MsG0680035493.01.T01:CDS 40.0%
!! TCAAGCAACGTCTTATTTGG+CGG + Chr6:106745512-106745531 None:intergenic 40.0%
!! TTATAGGGGAAGCATCATAG+CGG + Chr6:106748211-106748230 None:intergenic 40.0%
!!! ACATTGGTTTTGGTGTGTGT+TGG - Chr6:106746105-106746124 MsG0680035493.01.T01:CDS 40.0%
AAATTCAACCCCAGCCTCTA+CGG + Chr6:106748509-106748528 None:intergenic 45.0%
AATAATGAAGGAGGAGGAGG+AGG - Chr6:106744403-106744422 MsG0680035493.01.T01:CDS 45.0%
ACACAACTCCCATGTGGTTT+AGG - Chr6:106746300-106746319 MsG0680035493.01.T01:intron 45.0%
AGAATCTTGTTCTTGCGAGG+TGG + Chr6:106744850-106744869 None:intergenic 45.0%
AGAGTGAGAATACGTGGATG+GGG - Chr6:106748279-106748298 MsG0680035493.01.T01:CDS 45.0%
AGCTTGTGCTCTTCTTTCAG+TGG + Chr6:106745240-106745259 None:intergenic 45.0%
AGTCAAAACAAGAAGCCAGG+TGG - Chr6:106749127-106749146 MsG0680035493.01.T01:CDS 45.0%
AGTCGGATCAACTGCTAAGT+TGG + Chr6:106746273-106746292 None:intergenic 45.0%
ATCAAATGTCTACCGCGCTA+AGG + Chr6:106745673-106745692 None:intergenic 45.0%
ATCATTGGTCACCCGCTATT+GGG - Chr6:106747444-106747463 MsG0680035493.01.T01:intron 45.0%
ATGAGTTGTTCACCTGAGTG+AGG + Chr6:106746659-106746678 None:intergenic 45.0%
ATTCAGAGGATCCTAGAGAG+AGG - Chr6:106745040-106745059 MsG0680035493.01.T01:intron 45.0%
ATTTGCAAGTAAGGCCATGC+AGG + Chr6:106744913-106744932 None:intergenic 45.0%
CACTCTTATCGTCCACGATA+GGG - Chr6:106748050-106748069 MsG0680035493.01.T01:intron 45.0%
CTGTATTGAGTATCCCCACA+TGG + Chr6:106746354-106746373 None:intergenic 45.0%
GAGGTGGAGTAGTCAATGTA+CGG + Chr6:106744834-106744853 None:intergenic 45.0%
GATGCTTCCCCTATAATGAC+AGG - Chr6:106748215-106748234 MsG0680035493.01.T01:CDS 45.0%
GATTCATGAAGAGATGGCCT+TGG + Chr6:106748583-106748602 None:intergenic 45.0%
GCATCTGAATTTGCAGGTAG+CGG - Chr6:106748867-106748886 MsG0680035493.01.T01:CDS 45.0%
GCGGAAAATAATGAAGGAGG+AGG - Chr6:106744397-106744416 MsG0680035493.01.T01:CDS 45.0%
GGAGTTGTGTTTCCAAGAGT+CGG + Chr6:106746290-106746309 None:intergenic 45.0%
GGATGAAGAAGAGCCTTCAA+TGG - Chr6:106744885-106744904 MsG0680035493.01.T01:intron 45.0%
GTCGGATCAACTGCTAAGTT+GGG + Chr6:106746272-106746291 None:intergenic 45.0%
TAAGAAGGGATCGAAATCGG+CGG - Chr6:106744378-106744397 MsG0680035493.01.T01:CDS 45.0%
TACCGCGCTAAGGAAAAATC+AGG + Chr6:106745663-106745682 None:intergenic 45.0%
TAGACGGTCCTCACTTTACA+AGG - Chr6:106747361-106747380 MsG0680035493.01.T01:intron 45.0%
TATCATTGGTCACCCGCTAT+TGG - Chr6:106747443-106747462 MsG0680035493.01.T01:intron 45.0%
TCACTCTTATCGTCCACGAT+AGG - Chr6:106748049-106748068 MsG0680035493.01.T01:intron 45.0%
TCGGCGGAAAATAATGAAGG+AGG - Chr6:106744394-106744413 MsG0680035493.01.T01:CDS 45.0%
TGATCCAAGTGGAACAGTTC+TGG + Chr6:106746502-106746521 None:intergenic 45.0%
TGCTCATACTTCTCCATGTG+GGG - Chr6:106746338-106746357 MsG0680035493.01.T01:intron 45.0%
TGGATATGCACTAAACACGG+TGG + Chr6:106746741-106746760 None:intergenic 45.0%
TGTGCAGCAGTTTATCCGAA+CGG + Chr6:106746174-106746193 None:intergenic 45.0%
TTAGCAGTTGATCCGACTCT+TGG - Chr6:106746275-106746294 MsG0680035493.01.T01:intron 45.0%
TTCAGAGGATCCTAGAGAGA+GGG - Chr6:106745041-106745060 MsG0680035493.01.T01:intron 45.0%
TTCGGAACGTCACGAAAACT+CGG + Chr6:106744607-106744626 None:intergenic 45.0%
TTCTGTACCAGGATGGACAA+CGG + Chr6:106748641-106748660 None:intergenic 45.0%
TTGACTGTATGTGCCTTCAG+TGG - Chr6:106746522-106746541 MsG0680035493.01.T01:intron 45.0%
TTGGAAACACAACTCCCATG+TGG - Chr6:106746294-106746313 MsG0680035493.01.T01:intron 45.0%
TTTGCAAGTAAGGCCATGCA+GGG + Chr6:106744912-106744931 None:intergenic 45.0%
! CTGAGTTGAACGTCACATGA+TGG - Chr6:106748602-106748621 MsG0680035493.01.T01:CDS 45.0%
! CTGCGATTAAAGGCATGACT+TGG - Chr6:106748547-106748566 MsG0680035493.01.T01:CDS 45.0%
! TGCCTGATTTTTCCTTAGCG+CGG - Chr6:106745658-106745677 MsG0680035493.01.T01:intron 45.0%
! TGGCAGAAGCACAAAACCAA+AGG + Chr6:106747063-106747082 None:intergenic 45.0%
! TTTTTGTGTGGGGATTGTCG+TGG - Chr6:106746221-106746240 MsG0680035493.01.T01:intron 45.0%
!! CTGCTTTGGAGCAAAATGCA+CGG - Chr6:106748974-106748993 MsG0680035493.01.T01:CDS 45.0%
!! TGGAAGCGCTTGGAAGAAAT+GGG - Chr6:106749147-106749166 MsG0680035493.01.T01:CDS 45.0%
!! TGTTGGTGTTGAACCACTAG+TGG - Chr6:106747768-106747787 MsG0680035493.01.T01:intron 45.0%
!!! CTGAGTGCCAACATTGGTTT+TGG - Chr6:106746095-106746114 MsG0680035493.01.T01:intron 45.0%
!!! TGGTTTTGGTGCCATATCTG+CGG - Chr6:106746148-106746167 MsG0680035493.01.T01:CDS 45.0%
!! AAAAAAAAAAAAAAAAACTA+TGG + Chr6:106745888-106745907 None:intergenic 5.0%
!! ATTAATGTAAAATAAAATAA+GGG - Chr6:106746616-106746635 MsG0680035493.01.T01:intron 5.0%
AAGCGCTTGGAAGAAATGGG+AGG - Chr6:106749150-106749169 MsG0680035493.01.T01:CDS 50.0%
AGGAGAGCTTGAGGAAGTCT+TGG - Chr6:106745440-106745459 MsG0680035493.01.T01:intron 50.0%
AGTGAGAATACGTGGATGGG+GGG - Chr6:106748281-106748300 MsG0680035493.01.T01:CDS 50.0%
AGTGCCAGAACTGTTCCACT+TGG - Chr6:106746495-106746514 MsG0680035493.01.T01:intron 50.0%
ATAGGTCTTTCCGTAGAGGC+TGG - Chr6:106748496-106748515 MsG0680035493.01.T01:CDS 50.0%
ATGCACTCCTCGTAGAATGC+AGG + Chr6:106749066-106749085 None:intergenic 50.0%
CACTGATCCTGCATTCTACG+AGG - Chr6:106749056-106749075 MsG0680035493.01.T01:CDS 50.0%
CCTCATAGGTCTTTCCGTAG+AGG - Chr6:106748492-106748511 MsG0680035493.01.T01:CDS 50.0%
CCTCTACGGAAAGACCTATG+AGG + Chr6:106748495-106748514 None:intergenic 50.0%
CTTGAGCAGTTCGCATTTCC+AGG - Chr6:106745527-106745546 MsG0680035493.01.T01:intron 50.0%
GAGTGAGAATACGTGGATGG+GGG - Chr6:106748280-106748299 MsG0680035493.01.T01:CDS 50.0%
GGGGTTGAATTTGAGCCTGA+CGG - Chr6:106748517-106748536 MsG0680035493.01.T01:CDS 50.0%
GGGTTGAATTTGAGCCTGAC+GGG - Chr6:106748518-106748537 MsG0680035493.01.T01:CDS 50.0%
TAGGTCTTTCCGTAGAGGCT+GGG - Chr6:106748497-106748516 MsG0680035493.01.T01:CDS 50.0%
TTCCTGCAACCAATGCATCG+TGG + Chr6:106747930-106747949 None:intergenic 50.0%
! CGGGCTTTGTCTGCGATTAA+AGG - Chr6:106748537-106748556 MsG0680035493.01.T01:CDS 50.0%
! CGTGCATTTTGCTCCAAAGC+AGG + Chr6:106748976-106748995 None:intergenic 50.0%
! GCCGATTTCGATCCCTTCTT+AGG + Chr6:106744379-106744398 None:intergenic 50.0%
! GCTAACTTTGCATCGGTCTC+AGG + Chr6:106744970-106744989 None:intergenic 50.0%
!! CGGAGAGGGCTTTGTTCTTA+TGG - Chr6:106748887-106748906 MsG0680035493.01.T01:CDS 50.0%
!! GAATTTGCAGGTAGCGGAGA+GGG - Chr6:106748873-106748892 MsG0680035493.01.T01:CDS 50.0%
!! GTGGAAGCGCTTGGAAGAAA+TGG - Chr6:106749146-106749165 MsG0680035493.01.T01:CDS 50.0%
!! TGAATTTGCAGGTAGCGGAG+AGG - Chr6:106748872-106748891 MsG0680035493.01.T01:CDS 50.0%
AATCGCAGACAAAGCCCGTC+AGG + Chr6:106748535-106748554 None:intergenic 55.0%
ACTCCCATGTGGTTTAGGCC+AGG - Chr6:106746305-106746324 MsG0680035493.01.T01:intron 55.0%
ACTGTGTGTGTAGCGCTGCA+GGG - Chr6:106748008-106748027 MsG0680035493.01.T01:intron 55.0%
AGAATACGTGGATGGGGGGT+AGG - Chr6:106748285-106748304 MsG0680035493.01.T01:CDS 55.0%
AGCAAAATGCACGGAGCCAC+TGG - Chr6:106748983-106749002 MsG0680035493.01.T01:CDS 55.0%
AGCACTGCACCACGATGCAT+TGG - Chr6:106747918-106747937 MsG0680035493.01.T01:intron 55.0%
AGCCTTCAATGGACCCTGCA+TGG - Chr6:106744896-106744915 MsG0680035493.01.T01:intron 55.0%
AGGTCTTTCCGTAGAGGCTG+GGG - Chr6:106748498-106748517 MsG0680035493.01.T01:CDS 55.0%
CTCCCATGTGGTTTAGGCCA+GGG - Chr6:106746306-106746325 MsG0680035493.01.T01:intron 55.0%
CTCCCTGGCCTAAACCACAT+GGG + Chr6:106746311-106746330 None:intergenic 55.0%
CTTCTGGTAAGGCGGCAAGT+AGG - Chr6:106749226-106749245 MsG0680035493.01.T01:CDS 55.0%
GCAGTTCGCATTTCCAGGTC+TGG - Chr6:106745532-106745551 MsG0680035493.01.T01:intron 55.0%
TAGCAGGAAGCTTCAGCAGC+TGG + Chr6:106746761-106746780 None:intergenic 55.0%
TATCCGAACGGCCGCAGATA+TGG + Chr6:106746162-106746181 None:intergenic 55.0%
TCTCCCTGGCCTAAACCACA+TGG + Chr6:106746312-106746331 None:intergenic 55.0%
TGCATCGTGGTGCAGTGCTA+TGG + Chr6:106747917-106747936 None:intergenic 55.0%
TTCCAGAATGGATCCCCTGC+AGG - Chr6:106747878-106747897 MsG0680035493.01.T01:intron 55.0%
TTCTTCCAAGCGCTTCCACC+TGG + Chr6:106749145-106749164 None:intergenic 55.0%
TTGTCAAGCTTCGGACGGCT+TGG + Chr6:106749011-106749030 None:intergenic 55.0%
!! CACCACGATGCATTGGTTGC+AGG - Chr6:106747925-106747944 MsG0680035493.01.T01:intron 55.0%
!! GACTTGGCTTTTGGGCTCCA+AGG - Chr6:106748563-106748582 MsG0680035493.01.T01:CDS 55.0%
ACACACAGTGCAGTGGCTGC+AGG + Chr6:106747997-106748016 None:intergenic 60.0%
AGCCTGCAGGGGATCCATTC+TGG + Chr6:106747883-106747902 None:intergenic 60.0%
ATACGTGGATGGGGGGTAGG+AGG - Chr6:106748288-106748307 MsG0680035493.01.T01:CDS 60.0%
CACACAGTGCAGTGGCTGCA+GGG + Chr6:106747996-106748015 None:intergenic 60.0%
CACTGTGTGTGTAGCGCTGC+AGG - Chr6:106748007-106748026 MsG0680035493.01.T01:intron 60.0%
CCCTACCCCATGCCCAATAG+CGG + Chr6:106747459-106747478 None:intergenic 60.0%
CCGCTATTGGGCATGGGGTA+GGG - Chr6:106747456-106747475 MsG0680035493.01.T01:intron 60.0%
CCTACCCCATGCCCAATAGC+GGG + Chr6:106747458-106747477 None:intergenic 60.0%
CGCTATTGGGCATGGGGTAG+GGG - Chr6:106747457-106747476 MsG0680035493.01.T01:intron 60.0%
CTGTGTGTGTAGCGCTGCAG+GGG - Chr6:106748009-106748028 MsG0680035493.01.T01:intron 60.0%
GCGCTACACACACAGTGCAG+TGG + Chr6:106748004-106748023 None:intergenic 60.0%
GGCCATGCAGGGTCCATTGA+AGG + Chr6:106744901-106744920 None:intergenic 60.0%
GGCGGCAAGTAGGCCTCAAT+TGG - Chr6:106749236-106749255 MsG0680035493.01.T01:CDS 60.0%
GGTCACCCGCTATTGGGCAT+GGG - Chr6:106747450-106747469 MsG0680035493.01.T01:intron 60.0%
GTCACCCGCTATTGGGCATG+GGG - Chr6:106747451-106747470 MsG0680035493.01.T01:intron 60.0%
GTGCCATATCTGCGGCCGTT+CGG - Chr6:106746156-106746175 MsG0680035493.01.T01:CDS 60.0%
TATTGGGCATGGGGTAGGGG+TGG - Chr6:106747460-106747479 MsG0680035493.01.T01:intron 60.0%
TGGTCACCCGCTATTGGGCA+TGG - Chr6:106747449-106747468 MsG0680035493.01.T01:intron 60.0%
!! AGAAGCCAGGTGGAAGCGCT+TGG - Chr6:106749137-106749156 MsG0680035493.01.T01:CDS 60.0%
!! TTCGGACGGCTTGGTTCCAG+TGG + Chr6:106749002-106749021 None:intergenic 60.0%
CCCGCTATTGGGCATGGGGT+AGG - Chr6:106747455-106747474 MsG0680035493.01.T01:intron 65.0%
GTGCAGTGCTGCAGCCTGCA+GGG + Chr6:106747895-106747914 None:intergenic 65.0%
TGCAGTGCTGCAGCCTGCAG+GGG + Chr6:106747894-106747913 None:intergenic 65.0%
TGCAGTGGCTGCAGGGCCAT+TGG + Chr6:106747989-106748008 None:intergenic 65.0%
GGTGCAGTGCTGCAGCCTGC+AGG + Chr6:106747896-106747915 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr6 gene 106744349 106749263 106744349 ID=MsG0680035493.01;Name=MsG0680035493.01
Chr6 mRNA 106744349 106749263 106744349 ID=MsG0680035493.01.T01;Parent=MsG0680035493.01;Name=MsG0680035493.01.T01;_AED=0.38;_eAED=0.45;_QI=0|0|0|1|0.66|0.5|4|0|598
Chr6 exon 106748059 106749263 106748059 ID=MsG0680035493.01.T01:exon:21707;Parent=MsG0680035493.01.T01
Chr6 exon 106746104 106746213 106746104 ID=MsG0680035493.01.T01:exon:21706;Parent=MsG0680035493.01.T01
Chr6 exon 106745850 106745950 106745850 ID=MsG0680035493.01.T01:exon:21705;Parent=MsG0680035493.01.T01
Chr6 exon 106744349 106744729 106744349 ID=MsG0680035493.01.T01:exon:21704;Parent=MsG0680035493.01.T01
Chr6 CDS 106748059 106749263 106748059 ID=MsG0680035493.01.T01:cds;Parent=MsG0680035493.01.T01
Chr6 CDS 106746104 106746213 106746104 ID=MsG0680035493.01.T01:cds;Parent=MsG0680035493.01.T01
Chr6 CDS 106745850 106745950 106745850 ID=MsG0680035493.01.T01:cds;Parent=MsG0680035493.01.T01
Chr6 CDS 106744349 106744729 106744349 ID=MsG0680035493.01.T01:cds;Parent=MsG0680035493.01.T01
Gene Sequence

>MsG0680035493.01.T01

ATGCTCAAGCAGATATTAAATAGGATACCTAAGAAGGGATCGAAATCGGCGGAAAATAATGAAGGAGGAGGAGGAGGAACATCATCTTCTTCTTCAACTGCTTCAAACAGTGTAAGAAGCAGTTATGGAAATTCAACTGCTTCATCCATTTCAGGTGTTGATTCTAATTCGAGTATTGGAGGCGACATGCTTGTACAAGCAATGAATTCAAAATTAAATCTGAACGGTAGTTTGTCAGCTTCTTATGGAGCTTTGCCGAGTTTTCGTGACGTTCCGAATTCGGAGAAGCCGAATTTATTTATAAGAAAGTTGCAAATGTGCTGTGTTTTATTTGACTATACTGACCCTTCGAAGAACATCAAAGAAAAGGAGATTAAGCGACAAACACTTGTCGAACTTGTGGATTATGTTTCTTCGGCTAATGGCAAGTTTACGGATATTATGATGCAAGAAATTGTGAAAACCGTGTCAATAAATTTGTTCCGTACATTGACTACTCCACCTCGCAAGAACAAGATTCTTGAAGCCTTTGATATGGATGAAGAAGAGCCTTCAATGGACCCTGCATGGCCTTACTTGCAAATTGTGTATGAACTTCTTCTTAGGTTTGTCACATCACCTGAGACCGATGCAAAGTTAGCGAAAAGATATGTTGATCATTCATTTGTTCTCAGATTGTTGGACCTTTTTGATTCAGAGGATCCTAGAGAGAGGGATTACTTGAAGACAGTTCTTCATCGAATATACGGCAAATTTATGGTGCATCGACCGTTCATCAGAAAAGCAATCAACAATATATTCTACCGATTCATTTTTGAAACCGAGAAACACAATGGCATTGCAGAACTCTTAGAAATTTTGGGAAGTATAATCAACGGATTTGCTCTGCCACTGAAAGAAGAGCACAAGCTGTTTCTCGTGCGAGCTCTTATTCCTCTTCATAAACCGAAATGCATACCGATGTATCACCAGCAGTTATCTTACTGCATCACACAGTTTGTGGAAAAAGACTGCAAGCTTGCTGATACGATTATACGCGGATTATTGAAATACTGGCCGATAACGAATAGTTCTAAGGAGGTTATGTTCTTAGGAGAGCTTGAGGAAGTCTTGGAAGCGACTCAACCTGCAGAGTTTCAGAAATGTATGGTGCTCTTGTTCCGCCAAATAAGACGTTGCTTGAGCAGTTCGCATTTCCAGGTCTGGGTTGAGTTAGGCCAAACCCAAATTTTAAGATTGTATCAGAGTCTATCATTGGTCACCCGCTATTGGGCATGGGGTAGGGGTGGTGTTAAGAGTCTCATCTTACAAACCGCATTATATCTACTCAAGTATGAGTTTGGAGTAAGCTTATTGGCAGCAATGCATGCTACATTCTTATTTTTGGAAGGAAATTTCTACGAAATGCAAAGAATGGTAGCGGAGAGGGCTTTGTTCTTATGGAATAATGATCACATTGAGAACTTGATCAAACAGAACTACAAAATTATACTTCCTATAGTCTTACCTGCTTTGGAGCAAAATGCACGGAGCCACTGGAACCAAGCCGTCCGAAGCTTGACAATAAACGTCAGCAAGATCTTCTCGGACACTGATCCTGCATTCTACGAGGAGTGCATGACCAAATTCAGAGAAGATGAAGCGCAAGTGAATGATATGAAGTCAAAACAAGAAGCCAGGTGGAAGCGCTTGGAAGAAATGGGAGGCATGAAAGTTGCAATCAACGAACCAGTTTTGGTTTCTCCAAGAACTCATTCAACTTCTGGTAAGGCGGCAAGTAGGCCTCAATTGGATTGA
Protein sequence

>MsG0680035493.01.T01

MLKQILNRIPKKGSKSAENNEGGGGGTSSSSSTASNSVRSSYGNSTASSISGVDSNSSIGGDMLVQAMNSKLNLNGSLSASYGALPSFRDVPNSEKPNLFIRKLQMCCVLFDYTDPSKNIKEKEIKRQTLVELVDYVSSANGKFTDIMMQEIVKTVSINLFRTLTTPPRKNKILEAFDMDEEEPSMDPAWPYLQIVYELLLRFVTSPETDAKLAKRYVDHSFVLRLLDLFDSEDPRERDYLKTVLHRIYGKFMVHRPFIRKAINNIFYRFIFETEKHNGIAELLEILGSIINGFALPLKEEHKLFLVRALIPLHKPKCIPMYHQQLSYCITQFVEKDCKLADTIIRGLLKYWPITNSSKEVMFLGELEEVLEATQPAEFQKCMVLLFRQIRRCLSSSHFQVWVELGQTQILRLYQSLSLVTRYWAWGRGGVKSLILQTALYLLKYEFGVSLLAAMHATFLFLEGNFYEMQRMVAERALFLWNNDHIENLIKQNYKIILPIVLPALEQNARSHWNQAVRSLTINVSKIFSDTDPAFYEECMTKFREDEAQVNDMKSKQEARWKRLEEMGGMKVAINEPVLVSPRTHSTSGKAASRPQLD*