AlfalfaGEDB | MsG0180000706.01

M. sativa cultivar ZhongmuNo.1 / MsG0180000706.01

KEGG: -
GO: GO:0005515
PFAM: PF01535 PF12854 PF13041

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000706.01.T01	XP_013465747.1	86.542	535	72	0	6	540	55	589	0	946

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000706.01.T01	Q8L6Y3	47.159	528	270	3	10	534	54	575	4.37E-159	469

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000706.01.T01	A0A072VDB6	86.542	535	72	0	6	540	55	589	0.0	946

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0180000706.01	MsG0380015516.01	PPI
MsG0380016313.01	MsG0180000706.01	PPI

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000706.01.T01	MTR_1g010020	86.542	535	72	0	6	540	55	589	0.0	946
MsG0180000706.01.T01	MTR_1g010020	86.174	528	73	0	6	533	36	563	0.0	929
MsG0180000706.01.T01	MTR_6g079590	34.133	375	242	3	91	464	247	617	4.58e-65	223
MsG0180000706.01.T01	MTR_6g079590	30.444	473	287	4	96	531	77	544	1.07e-53	192
MsG0180000706.01.T01	MTR_6g079590	30.612	441	268	3	78	518	164	566	1.31e-53	192
MsG0180000706.01.T01	MTR_6g079590	25.968	439	322	1	100	538	46	481	4.03e-45	168
MsG0180000706.01.T01	MTR_6g079590	26.500	400	289	2	117	516	30	424	5.29e-40	154
MsG0180000706.01.T01	MTR_6g079590	29.151	271	154	5	91	326	352	619	2.57e-27	116
MsG0180000706.01.T01	MTR_6g079590	24.653	288	217	0	241	528	44	331	3.72e-24	107
MsG0180000706.01.T01	MTR_8g107050	31.304	460	277	3	95	519	174	629	1.65e-64	223

Showing 1 to 10 of 1,537 entries

Previous1 2 3 4 5…154Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180000706.01.T01	AT5G24830	47.159	528	270	3	10	534	54	575	4.46e-160	469
MsG0180000706.01.T01	AT1G74580	31.178	433	292	3	88	518	223	651	8.82e-66	228
MsG0180000706.01.T01	AT1G74580	28.054	442	315	1	75	516	105	543	6.21e-53	192
MsG0180000706.01.T01	AT1G74580	27.619	315	154	4	88	331	398	709	3.01e-31	129
MsG0180000706.01.T01	AT1G74580	24.883	426	277	5	92	516	16	399	1.72e-24	108
MsG0180000706.01.T01	AT1G74580	31.178	433	292	3	88	518	223	651	8.82e-66	228
MsG0180000706.01.T01	AT1G74580	28.054	442	315	1	75	516	105	543	6.21e-53	192
MsG0180000706.01.T01	AT1G74580	27.619	315	154	4	88	331	398	709	3.01e-31	129
MsG0180000706.01.T01	AT1G74580	24.883	426	277	5	92	516	16	399	1.72e-24	108
MsG0180000706.01.T01	AT1G74580	31.178	433	292	3	88	518	223	651	8.82e-66	228

Showing 1 to 10 of 1,908 entries

Previous1 2 3 4 5…191Next

Find 102 sgRNAs with CRISPR-Local

Find 128 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACTAAATGATGATAA+CGG	0.530580	1:-10036038	MsG0180000706.01.T01:CDS
AAATTATAAGTAACCACATC+AGG	0.515039	1:+10035375	None:intergenic
AACAATCTTGAGCGTTCAGC+TGG	0.491956	1:+10036718	None:intergenic
AACACATTGAAAACAGCACG+CGG	0.660723	1:+10036660	None:intergenic
AACCTAATCATTGACTCTTA+TGG	0.305445	1:-10035567	MsG0180000706.01.T01:CDS
AAGGAAGAGATGCCCACAGA+AGG	0.604473	1:-10035405	MsG0180000706.01.T01:CDS
AATATATCCTTGGTAAAGAT+AGG	0.437779	1:-10036479	MsG0180000706.01.T01:CDS
ACACATTGAAAACAGCACGC+GGG	0.744594	1:+10036661	None:intergenic
ACCCACAACCATATTGTAAA+TGG	0.180194	1:-10036317	MsG0180000706.01.T01:CDS
ACCCATTTACAATATGGTTG+TGG	0.442741	1:+10036315	None:intergenic

Showing 1 to 10 of 102 entries

Previous1 2 3 4 5…11Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATCTTGTATGAAATTTGGTC+AGG	+	Chr1:10036158-10036177	None:intergenic	30.0%
ATGATTAGGTTCCATACTAT+AGG	+	Chr1:10036269-10036288	None:intergenic	30.0%
GGTTATTACATTAATGTTGC+AGG	-	Chr1:10035340-10035359	MsG0180000706.01.T01:CDS	30.0%
GTTAGAAAGATGTTAGAATC+TGG	-	Chr1:10035591-10035610	MsG0180000706.01.T01:CDS	30.0%
TAAGAATGGGAAAAGTAATC+AGG	-	Chr1:10035881-10035900	MsG0180000706.01.T01:CDS	30.0%
TAATACATACTGTAAAGTGG+GGG	-	Chr1:10036709-10036728	MsG0180000706.01.T01:CDS	30.0%
TATGCTAGAATACTGAAATC+TGG	-	Chr1:10036650-10036669	MsG0180000706.01.T01:CDS	30.0%
TCATACAAGATGATGATTCA+TGG	-	Chr1:10036167-10036186	MsG0180000706.01.T01:CDS	30.0%
TCTTGGAGTTATGTCTAAAA+TGG	-	Chr1:10036124-10036143	MsG0180000706.01.T01:CDS	30.0%
TTCCATAAGAGTCAATGATT+AGG	+	Chr1:10036283-10036302	None:intergenic	30.0%

Showing 1 to 10 of 128 entries

Previous1 2 3 4 5…13Next

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	10035068	10036799	10035068	ID=MsG0180000706.01;Name=MsG0180000706.01
Chr1	mRNA	10035068	10036799	10035068	ID=MsG0180000706.01.T01;Parent=MsG0180000706.01;Name=MsG0180000706.01.T01;_AED=0.48;_eAED=0.48;_QI=0\|0\|0\|1\|1\|1\|2\|0\|540
Chr1	exon	10036615	10036799	10036615	ID=MsG0180000706.01.T01:exon:977;Parent=MsG0180000706.01.T01
Chr1	exon	10035068	10036505	10035068	ID=MsG0180000706.01.T01:exon:976;Parent=MsG0180000706.01.T01
Chr1	CDS	10036615	10036799	10036615	ID=MsG0180000706.01.T01:cds;Parent=MsG0180000706.01.T01
Chr1	CDS	10035068	10036505	10035068	ID=MsG0180000706.01.T01:cds;Parent=MsG0180000706.01.T01

Gene Sequence

>MsG0180000706.01.T01

ATGTTTGGATATAGCATATTACACGACGAGGATACAGTGTCAGCTATTGGGAGAAAGTGCCAGCTGAACGCTCAAGATTGTTCGTCGCATGACAAGAATTTTGGTGGTGAGAAGGACCCGCGTGCTGTTTTCAATGTGTTGGATACCATGCTAAAGTCTAGTCTAGAGCGTCTGAAGATTATGAGGGAAAATATATCCTTGGTAAAGATAGGTCTTCATGGATATGCATGTCAATATAACAATGCTGAAAATGCAGCCACCATTAGGTTTTTGTGCTTGGAAGGTGAATTGAAAGCTGCTTTGTCGCTTCGAGAAAAAATGATGGAAAAAGGTGTTCTCCCTGACGTATATACCCACAACCATATTGTAAATGGGTTGTGCAAAAATGGGCATATGAATGAGGCAGATTCGCTTGTTAGAAAGATGTTAGAATCTGGTCCTCATCCCAACTGTGTTACTTACAACACCTTAATTAAGGGATATCGCGCTGTCAATAGTATACAAAAAGCTAAGGATCTGTTCACAACCATGTCCAATACTGGTATTCAGCCAAACAGGGTTACATGGAACATAATTGTACGCGCCTTGTGTGAGAAAGGTCAGCTAGAGGAAGCTAGAAATATGCTTGATAAAATACTAAATGATGATAACGGCAAAGATACACCTGATTTAGTGGCTTCAACTACACTTATGGATAATTACTTTAAGAATGGGAAAAGTAATCAGGCTCTTGGTCTTTGGAATGAGATGATTCAAAGGTGTACAAAAGTAGATGTTGTTGCTTATAATGTTCTTATCAATGGATTTTGCCGGAATCAACAGATGCATCTTGCATATGGATATGCATGTGAGATGCTTAAGAAAGGTTTAGTTCCAGATGTTTTTACCTACAATATTCTTATTTGTGCTCTTTGCAAGGAGGGAAAGATTAGTGAAGCTTACTATCTTCTTGGAGTTATGTCTAAAATGGGAGTTATGCCTGACCAAATTTCATACAAGATGATGATTCATGGCCTTTGTTTAAATGAAGATGTTGCGAGAGCAAAAGAATTGCTTTTGTGTATGTTGAATAATTTTATGGTACCCCAACCTATAGTATGGAACCTAATCATTGACTCTTATGGAAGATGCGAAGATCTTAGAAATGCTTTTTTAACAAGAGATCTGATGTTGGCTTCTGGTGTTCTCCCCAATGTATTTACTTATAATGCTTTAATTCTTGCACAATTGAAGAGTGGAAATGTCTACATTGCTCGCTCTCTGAAGGAAGAGATGCCCACAGAAGGTCTTCGTCCTGATGTGGTTACTTATAATTTGTTGATAGGCGGTGCTTTTAATATAGGAGATCTCGATTTAGCGCGTCAACTATGGAATGAGATGGTGCAGAGGGGGTGTGAACCAGATTTAGTAACTCGTACTGAAATTATTAGGTGGTATTGTATCACAGATAACATTAAAGCAGCGGAAGAGCTTTATGCTAGAATACTGAAATCTGGTTCATTGAGGGATCATGTTCCAGTTCAGATTCTTTTTAATACATACTGTAAAGTGGGGGAGCCAATTAGGGCATTTAACATTTATCAAGACTGGCTGAAAAGTAAACAAGACAGTAATTGTTCCTGA

Protein sequence

>MsG0180000706.01.T01

MFGYSILHDEDTVSAIGRKCQLNAQDCSSHDKNFGGEKDPRAVFNVLDTMLKSSLERLKIMRENISLVKIGLHGYACQYNNAENAATIRFLCLEGELKAALSLREKMMEKGVLPDVYTHNHIVNGLCKNGHMNEADSLVRKMLESGPHPNCVTYNTLIKGYRAVNSIQKAKDLFTTMSNTGIQPNRVTWNIIVRALCEKGQLEEARNMLDKILNDDNGKDTPDLVASTTLMDNYFKNGKSNQALGLWNEMIQRCTKVDVVAYNVLINGFCRNQQMHLAYGYACEMLKKGLVPDVFTYNILICALCKEGKISEAYYLLGVMSKMGVMPDQISYKMMIHGLCLNEDVARAKELLLCMLNNFMVPQPIVWNLIIDSYGRCEDLRNAFLTRDLMLASGVLPNVFTYNALILAQLKSGNVYIARSLKEEMPTEGLRPDVVTYNLLIGGAFNIGDLDLARQLWNEMVQRGCEPDLVTRTEIIRWYCITDNIKAAEELYARILKSGSLRDHVPVQILFNTYCKVGEPIRAFNIYQDWLKSKQDSNCS*