AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015516.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015516.01.T01 MTR_3g071620 98.901 273 3 0 252 524 317 589 0.0 563
MsG0380015516.01.T01 MTR_3g071620 99.134 231 2 0 1 231 1 231 7.79e-160 467
MsG0380015516.01.T01 MTR_2g055850 34.899 447 234 9 5 399 82 523 2.13e-70 235
MsG0380015516.01.T01 MTR_4g112340 33.962 424 224 9 28 398 109 529 1.94e-66 225
MsG0380015516.01.T01 MTR_5g092560 34.633 436 221 10 33 413 93 519 6.50e-60 211
MsG0380015516.01.T01 MTR_4g068990 34.707 461 233 13 13 413 67 519 3.95e-59 209
MsG0380015516.01.T01 MTR_6g082080 34.324 370 187 9 7 329 5 365 3.88e-51 181
MsG0380015516.01.T01 MTR_7g056830 34.324 370 187 9 7 329 5 365 6.63e-51 180
MsG0380015516.01.T01 MTR_2g041140 32.398 392 210 6 6 346 131 518 1.87e-50 184
MsG0380015516.01.T01 MTR_3g049990 33.420 383 190 8 6 333 142 514 3.93e-50 184
MsG0380015516.01.T01 MTR_8g097000 30.233 430 237 10 10 380 284 709 7.07e-49 180
MsG0380015516.01.T01 MTR_4g079320 31.300 377 200 7 22 344 25 396 1.31e-48 180
MsG0380015516.01.T01 MTR_8g027780 30.628 382 193 10 10 327 102 475 2.57e-48 176
MsG0380015516.01.T01 MTR_5g090120 30.303 363 199 7 4 317 69 426 3.88e-48 176
MsG0380015516.01.T01 MTR_3g449250 31.034 348 186 6 19 317 93 435 1.50e-46 171
MsG0380015516.01.T01 MTR_8g027775 28.406 433 240 11 10 381 98 521 2.86e-46 170
MsG0380015516.01.T01 MTR_3g449250 31.034 348 186 6 19 317 93 435 2.96e-46 171
MsG0380015516.01.T01 MTR_4g112320 30.084 359 194 9 105 409 3 358 4.32e-46 166
MsG0380015516.01.T01 MTR_6g005320 31.768 362 180 8 22 319 255 613 4.90e-46 171
MsG0380015516.01.T01 MTR_4g134170 32.020 406 196 13 22 359 293 686 1.28e-45 170
MsG0380015516.01.T01 MTR_1g054630 34.694 343 159 9 39 319 177 516 7.57e-45 167
MsG0380015516.01.T01 MTR_2g032630 30.227 397 208 10 26 366 506 889 1.05e-44 169
MsG0380015516.01.T01 MTR_3g083690 34.593 344 159 9 39 319 168 508 1.22e-44 166
MsG0380015516.01.T01 MTR_6g005550 31.445 353 190 7 26 330 175 523 1.63e-44 167
MsG0380015516.01.T01 MTR_1g095810 29.396 381 204 9 15 339 146 517 2.25e-44 165
MsG0380015516.01.T01 MTR_5g027840 33.333 360 179 9 14 319 104 456 8.23e-44 162
MsG0380015516.01.T01 MTR_2g007000 29.491 373 211 8 22 345 510 879 4.81e-43 164
MsG0380015516.01.T01 MTR_1g026830 29.086 361 193 7 15 319 148 501 3.23e-42 159
MsG0380015516.01.T01 MTR_2g100230 30.579 363 192 10 6 319 93 444 7.18e-41 154
MsG0380015516.01.T01 MTR_7g109720 31.624 351 188 8 26 327 242 589 1.28e-40 156
MsG0380015516.01.T01 MTR_4g105100 30.352 369 185 10 27 330 200 561 2.31e-38 149
MsG0380015516.01.T01 MTR_8g042690 27.363 402 219 10 39 379 41 430 1.44e-37 144
MsG0380015516.01.T01 MTR_5g092560 32.803 314 150 8 155 413 1 308 2.24e-37 145
MsG0380015516.01.T01 MTR_4g114120 33.242 364 167 14 39 331 163 521 1.81e-36 144
MsG0380015516.01.T01 MTR_1g012420 28.809 361 197 9 9 319 42 392 6.96e-36 139
MsG0380015516.01.T01 MTR_8g027780 29.651 344 170 10 10 289 102 437 1.21e-35 139
MsG0380015516.01.T01 MTR_4g010565 28.726 369 203 10 9 327 119 477 2.10e-35 139
MsG0380015516.01.T01 MTR_6g056080 27.764 407 220 9 22 357 109 512 5.00e-35 139
MsG0380015516.01.T01 MTR_4g068990 32.476 311 155 8 155 413 1 308 1.11e-34 137
MsG0380015516.01.T01 MTR_4g125970 28.490 351 196 7 22 325 47 389 1.12e-34 135
MsG0380015516.01.T01 MTR_4g125970 28.490 351 196 7 22 325 64 406 3.09e-34 134
MsG0380015516.01.T01 MTR_3g107420 27.978 361 200 9 9 319 42 392 6.15e-34 133
MsG0380015516.01.T01 MTR_8g018400 28.406 345 192 8 22 319 47 383 2.19e-33 131
MsG0380015516.01.T01 MTR_2g438110 26.667 345 198 8 22 319 40 376 4.60e-33 130
MsG0380015516.01.T01 MTR_7g100820 30.163 368 193 12 15 331 131 485 5.94e-33 133
MsG0380015516.01.T01 MTR_1g102410 27.962 422 230 11 22 373 50 467 1.04e-32 132
MsG0380015516.01.T01 MTR_7g076800 27.701 361 207 10 2 316 126 478 1.14e-32 131
MsG0380015516.01.T01 MTR_7g076830 27.424 361 208 9 2 316 128 480 1.17e-32 131
MsG0380015516.01.T01 MTR_2g066050 31.956 363 175 13 11 316 50 397 1.78e-32 130
MsG0380015516.01.T01 MTR_2g039960 27.920 351 196 8 22 324 47 388 2.00e-32 129
MsG0380015516.01.T01 MTR_7g076820 27.424 361 208 9 2 316 135 487 2.41e-32 130
MsG0380015516.01.T01 MTR_6g033070 29.132 357 182 12 22 319 146 490 5.89e-32 129
MsG0380015516.01.T01 MTR_2g099620 27.536 345 195 6 22 319 31 367 1.40e-31 126
MsG0380015516.01.T01 MTR_2g099620 27.536 345 195 6 22 319 47 383 1.91e-31 126
MsG0380015516.01.T01 MTR_1g022305 29.755 326 189 9 15 330 4 299 7.80e-31 125
MsG0380015516.01.T01 MTR_3g467550 34.361 227 144 4 2 226 71 294 2.39e-29 122
MsG0380015516.01.T01 MTR_3g467550 42.308 78 45 0 254 331 377 454 6.26e-12 68.6
MsG0380015516.01.T01 MTR_6g039840 27.717 368 197 11 22 325 116 478 2.94e-29 122
MsG0380015516.01.T01 MTR_8g027770 34.259 216 133 5 10 219 197 409 3.66e-29 122
MsG0380015516.01.T01 MTR_3g467550 33.962 212 136 3 15 226 118 325 9.26e-29 119
MsG0380015516.01.T01 MTR_3g467550 33.962 212 136 3 15 226 118 325 3.78e-28 118
MsG0380015516.01.T01 MTR_3g467550 42.308 78 45 0 254 331 408 485 6.83e-12 68.2
MsG0380015516.01.T01 MTR_5g069330 26.776 366 207 10 15 330 8 362 2.07e-27 114
MsG0380015516.01.T01 MTR_5g069330 26.776 366 207 10 15 330 4 358 3.17e-27 114
MsG0380015516.01.T01 MTR_4g105100 32.114 246 138 8 27 256 200 432 5.07e-26 112
MsG0380015516.01.T01 MTR_2g043360 36.667 180 88 4 254 407 279 458 9.55e-24 104
MsG0380015516.01.T01 MTR_2g043360 36.667 180 88 4 254 407 397 576 1.47e-23 105
MsG0380015516.01.T01 MTR_2g043360 30.189 212 128 3 34 226 60 270 4.95e-23 103
MsG0380015516.01.T01 MTR_4g059460 29.098 244 142 5 7 226 37 273 1.79e-23 104
MsG0380015516.01.T01 MTR_4g059460 36.667 180 88 4 254 407 400 579 2.83e-23 103
MsG0380015516.01.T01 MTR_4g459350 30.052 193 130 4 7 197 34 223 1.23e-21 95.1
MsG0380015516.01.T01 MTR_0915s0010 31.343 201 130 4 29 229 2 194 2.69e-21 94.4
MsG0380015516.01.T01 MTR_3g107420 30.415 217 138 5 9 222 42 248 8.79e-21 93.6
MsG0380015516.01.T01 MTR_4g077370 33.333 204 125 5 15 216 251 445 1.65e-19 91.7
MsG0380015516.01.T01 MTR_4g077370 34.615 208 96 8 15 213 3 179 1.65e-16 82.4
MsG0380015516.01.T01 MTR_1g083130 33.649 211 115 5 26 222 36 235 2.39e-19 92.0
MsG0380015516.01.T01 MTR_3g118120 32.515 163 96 6 41 194 157 314 2.57e-16 82.0
MsG0380015516.01.T01 MTR_2g063080 26.923 208 136 4 4 200 99 301 5.00e-16 81.3
MsG0380015516.01.T01 MTR_7g057250 52.778 72 34 0 254 325 514 585 5.69e-16 81.6
MsG0380015516.01.T01 MTR_7g057250 30.526 190 107 6 26 194 173 358 2.31e-15 79.7
MsG0380015516.01.T01 MTR_5g077690 27.551 196 112 4 20 190 33 223 8.25e-12 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015516.01.T01 AT1G71370 57.374 556 175 6 1 495 1 555 0.0 623
MsG0380015516.01.T01 AT1G71280 44.341 539 179 12 1 495 1 462 1.48e-131 390
MsG0380015516.01.T01 AT5G05450 80.263 228 44 1 7 233 8 235 1.50e-124 377
MsG0380015516.01.T01 AT5G05450 64.621 277 92 1 254 524 317 593 2.49e-120 366
MsG0380015516.01.T01 AT1G71280 55.625 320 93 6 1 282 1 309 1.50e-106 322
MsG0380015516.01.T01 AT3G18600 34.852 439 231 9 10 398 86 519 1.95e-72 241
MsG0380015516.01.T01 AT5G65900 33.038 451 246 8 10 409 151 596 3.16e-70 236
MsG0380015516.01.T01 AT5G54910 33.917 457 243 10 14 419 72 520 1.36e-63 221
MsG0380015516.01.T01 AT1G77030 31.683 404 209 10 22 371 35 425 5.93e-51 187
MsG0380015516.01.T01 AT5G63630 31.019 432 229 13 10 379 51 475 2.14e-50 181
MsG0380015516.01.T01 AT4G16630 33.795 361 180 7 22 330 174 527 2.98e-50 184
MsG0380015516.01.T01 AT5G63630 32.908 392 194 11 10 337 245 631 2.92e-49 181
MsG0380015516.01.T01 AT3G06480 34.366 355 177 9 26 330 446 794 7.41e-49 182
MsG0380015516.01.T01 AT3G58570 35.569 343 156 8 39 319 170 509 1.66e-48 178
MsG0380015516.01.T01 AT5G60990 33.811 349 167 8 39 329 33 375 2.82e-48 174
MsG0380015516.01.T01 AT2G42520 35.569 343 156 9 39 319 183 522 4.59e-47 174
MsG0380015516.01.T01 AT2G42520 35.569 343 156 9 39 319 183 522 4.59e-47 174
MsG0380015516.01.T01 AT2G42520 35.569 343 156 9 39 319 183 522 4.59e-47 174
MsG0380015516.01.T01 AT4G33370 29.921 381 202 9 15 339 99 470 1.04e-46 171
MsG0380015516.01.T01 AT5G08620 30.105 382 203 8 10 331 77 454 1.60e-46 171
MsG0380015516.01.T01 AT3G58510 33.952 377 174 12 13 319 141 512 2.01e-46 171
MsG0380015516.01.T01 AT3G58510 33.952 377 174 12 13 319 141 512 2.01e-46 171
MsG0380015516.01.T01 AT3G58510 33.952 377 174 12 13 319 141 512 2.01e-46 171
MsG0380015516.01.T01 AT5G51280 29.659 381 203 9 15 339 148 519 3.05e-46 171
MsG0380015516.01.T01 AT3G22330 31.304 345 183 7 22 317 111 450 3.79e-46 171
MsG0380015516.01.T01 AT3G09620 31.395 344 213 6 22 345 404 744 4.02e-46 174
MsG0380015516.01.T01 AT3G09620 31.395 344 213 6 22 345 403 743 4.21e-46 173
MsG0380015516.01.T01 AT5G08610 30.691 391 204 8 10 337 379 765 6.85e-46 172
MsG0380015516.01.T01 AT3G01540 30.380 395 203 10 26 366 169 545 2.09e-44 166
MsG0380015516.01.T01 AT3G01540 30.380 395 203 10 26 366 169 545 2.18e-44 166
MsG0380015516.01.T01 AT3G01540 30.380 395 203 10 26 366 169 545 2.18e-44 166
MsG0380015516.01.T01 AT3G01540 30.380 395 203 10 26 366 169 545 2.18e-44 166
MsG0380015516.01.T01 AT3G22310 30.172 348 185 7 22 318 123 463 3.69e-43 162
MsG0380015516.01.T01 AT3G22310 30.172 348 185 7 22 318 123 463 4.40e-43 162
MsG0380015516.01.T01 AT5G14610 30.203 394 213 10 22 366 168 548 1.49e-42 161
MsG0380015516.01.T01 AT1G16280 34.940 332 158 9 39 319 82 406 1.52e-42 159
MsG0380015516.01.T01 AT5G14610 30.203 394 213 10 22 366 168 548 1.64e-42 161
MsG0380015516.01.T01 AT5G14610 30.203 394 213 10 22 366 176 556 1.91e-42 161
MsG0380015516.01.T01 AT1G31970 31.551 374 192 10 7 321 104 472 2.42e-42 159
MsG0380015516.01.T01 AT2G33730 31.319 364 181 9 22 319 320 680 3.04e-42 161
MsG0380015516.01.T01 AT1G20920 29.759 373 210 7 22 345 536 905 5.43e-42 161
MsG0380015516.01.T01 AT1G20920 29.759 373 210 7 22 345 536 905 5.43e-42 161
MsG0380015516.01.T01 AT1G20920 29.759 373 210 7 22 345 536 905 5.43e-42 161
MsG0380015516.01.T01 AT1G20920 29.759 373 210 7 22 345 536 905 5.43e-42 161
MsG0380015516.01.T01 AT1G20920 29.759 373 210 7 22 345 536 905 5.43e-42 161
MsG0380015516.01.T01 AT1G20920 29.759 373 210 7 22 345 536 905 5.43e-42 161
MsG0380015516.01.T01 AT5G14610 29.765 383 207 9 33 366 48 417 8.05e-42 157
MsG0380015516.01.T01 AT5G14610 29.765 383 207 9 33 366 48 417 8.05e-42 157
MsG0380015516.01.T01 AT1G20920 29.759 373 210 7 22 345 198 567 2.12e-41 159
MsG0380015516.01.T01 AT5G14610 30.548 383 204 10 33 366 247 616 3.27e-41 158
MsG0380015516.01.T01 AT1G55150 30.726 358 185 10 15 319 101 448 3.80e-40 152
MsG0380015516.01.T01 AT5G63120 31.214 346 179 8 26 319 176 514 4.44e-40 153
MsG0380015516.01.T01 AT2G07750 28.929 439 241 13 6 380 367 798 6.32e-40 155
MsG0380015516.01.T01 AT5G26742 30.746 335 168 8 40 318 127 453 6.59e-40 154
MsG0380015516.01.T01 AT5G26742 30.746 335 168 8 40 318 127 453 6.63e-40 154
MsG0380015516.01.T01 AT1G55150 31.268 355 187 10 15 319 126 473 7.36e-40 152
MsG0380015516.01.T01 AT3G09720 30.704 355 184 10 26 331 152 493 1.05e-39 152
MsG0380015516.01.T01 AT3G09720 30.704 355 184 10 26 331 152 493 1.05e-39 152
MsG0380015516.01.T01 AT5G26742 31.138 334 165 9 41 318 36 360 1.19e-39 153
MsG0380015516.01.T01 AT2G47330 30.682 352 193 7 22 325 235 583 2.46e-39 153
MsG0380015516.01.T01 AT3G06480 34.185 313 150 9 26 288 446 752 3.78e-39 152
MsG0380015516.01.T01 AT1G63250 28.276 435 249 11 6 380 320 751 5.49e-39 152
MsG0380015516.01.T01 AT1G28180 32.716 324 167 8 44 319 2 322 1.34e-38 145
MsG0380015516.01.T01 AT1G51380 27.479 353 197 10 15 319 24 365 9.04e-37 140
MsG0380015516.01.T01 AT4G00660 27.424 361 208 9 2 316 117 469 2.89e-35 138
MsG0380015516.01.T01 AT4G00660 27.424 361 208 9 2 316 117 469 2.89e-35 138
MsG0380015516.01.T01 AT5G11170 28.184 369 205 9 9 327 42 400 6.59e-35 136
MsG0380015516.01.T01 AT5G11200 28.184 369 205 9 9 327 42 400 6.59e-35 136
MsG0380015516.01.T01 AT3G19760 27.451 357 196 10 13 319 35 378 1.28e-34 135
MsG0380015516.01.T01 AT3G61240 26.870 361 210 9 2 316 110 462 6.21e-34 134
MsG0380015516.01.T01 AT3G61240 26.870 361 210 9 2 316 110 462 6.21e-34 134
MsG0380015516.01.T01 AT1G72730 28.451 355 195 9 17 324 47 389 9.54e-34 132
MsG0380015516.01.T01 AT2G45810 26.870 361 210 9 2 316 140 492 2.57e-33 133
MsG0380015516.01.T01 AT3G13920 27.429 350 199 6 22 324 46 387 3.25e-33 131
MsG0380015516.01.T01 AT3G13920 27.429 350 199 6 22 324 46 387 3.41e-33 131
MsG0380015516.01.T01 AT3G13920 27.429 350 199 6 22 324 50 391 3.70e-33 131
MsG0380015516.01.T01 AT3G13920 27.429 350 199 6 22 324 36 377 3.74e-33 130
MsG0380015516.01.T01 AT3G13920 27.019 359 207 6 13 324 32 382 2.21e-32 129
MsG0380015516.01.T01 AT1G54270 28.116 345 193 7 22 319 46 382 4.56e-32 128
MsG0380015516.01.T01 AT5G14610 30.818 318 166 9 22 291 176 487 9.47e-32 128
MsG0380015516.01.T01 AT5G62190 28.852 357 198 9 22 325 103 456 2.35e-31 129
MsG0380015516.01.T01 AT1G54270 28.228 333 184 7 34 319 53 377 8.98e-31 124
MsG0380015516.01.T01 AT5G11170 27.329 322 180 7 54 327 2 317 2.63e-30 121
MsG0380015516.01.T01 AT3G06980 28.610 374 192 13 23 323 382 753 2.71e-28 120
MsG0380015516.01.T01 AT5G63120 29.904 311 159 8 26 284 176 479 1.61e-27 115
MsG0380015516.01.T01 AT5G63120 36.946 203 117 6 26 224 176 371 2.19e-27 115
MsG0380015516.01.T01 AT5G63120 36.946 203 117 6 26 224 176 371 2.19e-27 115
MsG0380015516.01.T01 AT5G63120 36.946 203 117 6 26 224 176 371 2.19e-27 115
MsG0380015516.01.T01 AT4G09730 25.721 416 223 13 22 367 119 518 7.68e-27 115
MsG0380015516.01.T01 AT3G02065 27.642 369 206 12 3 319 103 462 8.80e-27 114
MsG0380015516.01.T01 AT3G02065 27.642 369 206 12 3 319 103 462 8.80e-27 114
MsG0380015516.01.T01 AT3G16840 26.265 415 188 17 26 325 201 612 1.46e-24 108
MsG0380015516.01.T01 AT3G16840 26.265 415 188 17 26 325 202 613 1.51e-24 108
MsG0380015516.01.T01 AT2G40700 33.641 217 126 4 34 233 50 265 1.57e-24 107
MsG0380015516.01.T01 AT2G40700 33.889 180 93 3 254 407 389 568 4.18e-21 97.4
MsG0380015516.01.T01 AT1G51380 31.776 214 134 7 15 227 24 226 1.13e-23 101
MsG0380015516.01.T01 AT1G51380 31.776 214 134 7 15 227 24 226 8.88e-23 99.0
MsG0380015516.01.T01 AT1G51380 31.776 214 134 7 15 227 24 226 1.06e-22 99.0
MsG0380015516.01.T01 AT3G02065 26.606 327 184 10 45 319 3 325 1.76e-22 99.8
MsG0380015516.01.T01 AT5G11200 30.275 218 139 5 9 223 42 249 2.90e-20 94.0
MsG0380015516.01.T01 AT3G53110 25.538 372 207 12 11 320 89 452 9.40e-20 92.8
MsG0380015516.01.T01 AT5G11200 30.233 215 137 5 9 220 42 246 1.05e-19 92.4
MsG0380015516.01.T01 AT4G34910 29.952 207 137 5 22 222 53 257 1.14e-17 86.7
MsG0380015516.01.T01 AT1G12770 28.000 250 155 5 3 230 100 346 2.10e-17 85.9
MsG0380015516.01.T01 AT1G12770 28.000 250 155 5 3 230 100 346 2.10e-17 85.9
MsG0380015516.01.T01 AT4G15850 28.426 197 114 6 17 190 33 225 3.14e-12 69.3
MsG0380015516.01.T01 AT1G28180 35.897 117 70 3 44 157 2 116 1.60e-11 62.0
MsG0380015516.01.T01 AT1G59990 30.093 216 124 7 22 225 87 287 2.63e-11 66.6
MsG0380015516.01.T01 AT1G59990 30.093 216 124 7 22 225 87 287 2.83e-11 66.6

Find 166 sgRNAs with CRISPR-Local

Find 374 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAATCGGATGGATATTT+TGG 0.098405 3:-71295050 MsG0380015516.01.T01:CDS
TAGTGGGAGCAAACAAAATT+TGG 0.206414 3:+71290280 None:intergenic
TGGCTTCTTTCTTTACTTGC+AGG 0.214905 3:+71290877 None:intergenic
TGATAGCATTTATCTGCTTC+TGG 0.233957 3:+71294444 None:intergenic
GGAGGAACCTGGTGAGGTTT+GGG 0.292465 3:+71295351 None:intergenic
CACTTTCTATGTACATTAAT+CGG 0.309890 3:+71290391 None:intergenic
GGGATAGTGGCGGCTTGAAC+GGG 0.311237 3:+71295483 None:intergenic
GTCGATGCCGCCACCGGTTC+CGG 0.316733 3:-71295432 MsG0380015516.01.T01:CDS
TTCGCTAAAGTCGAAATAAA+AGG 0.318766 3:+71295184 None:intergenic
TCGAAATTGATATCTTTAAC+TGG 0.318792 3:+71292332 None:intergenic
CTCATGGCAGTAGGTACTTC+AGG 0.321137 3:+71290816 None:intergenic
GGGAGGAACCTGGTGAGGTT+TGG 0.322712 3:+71295350 None:intergenic
TGCGACGCTAATTCCCTTGT+AGG 0.324437 3:+71295226 None:intergenic
GTTCCTTTGTTTAGTCTGAT+AGG 0.325177 3:-71290214 MsG0380015516.01.T01:three_prime_UTR
ACCCTATGTACGAACACATT+TGG 0.326512 3:+71293281 None:intergenic
GGTACTTCAGGAGTTCTCTT+TGG 0.346860 3:+71290828 None:intergenic
GGTCTCTATCGGCAACAAAA+TGG 0.346895 3:+71290438 None:intergenic
AGGTGGAAAGAACTTGAAAT+TGG 0.350487 3:-71292440 MsG0380015516.01.T01:CDS
GGTTGGTCGAACTGCTCGGC+TGG 0.352335 3:-71293261 MsG0380015516.01.T01:CDS
GGCTGATAGACTATTAGATA+TGG 0.362002 3:-71294471 MsG0380015516.01.T01:CDS
CATGTCTGATTACGCTGTTA+TGG 0.364264 3:-71290630 MsG0380015516.01.T01:three_prime_UTR
GATAGTGGCGGCTTGAACGG+GGG 0.370101 3:+71295485 None:intergenic
CCCTATGTACGAACACATTT+GGG 0.373541 3:+71293282 None:intergenic
CGCTGTTATGGATATGTTGT+TGG 0.376752 3:-71290618 MsG0380015516.01.T01:three_prime_UTR
TTGCCTAAGCTTCGAAGAAC+TGG 0.383379 3:-71294413 MsG0380015516.01.T01:CDS
GTTGAGGTTAATGCTTTGTT+GGG 0.388895 3:+71295585 None:intergenic
GTTTGGGATTGGAAGCGTTC+CGG 0.390910 3:+71295367 None:intergenic
GTGGTGACAGTGCAGAGATT+TGG 0.391096 3:-71290371 MsG0380015516.01.T01:three_prime_UTR
GGCATATTCATCCTCATCTA+TGG 0.399507 3:+71290695 None:intergenic
GTCTTTGTAGCTGCAGAGTA+AGG 0.400408 3:+71295461 None:intergenic
GTGTTGTAATGGTGGAGTGC+TGG 0.403643 3:-71290596 MsG0380015516.01.T01:three_prime_UTR
ATGTCATGGAGAAGGGAGTC+AGG 0.405545 3:-71292596 MsG0380015516.01.T01:CDS
AGGATTCCTCAATCCTGCTT+TGG 0.407237 3:+71294349 None:intergenic
ATGTCACTCACCGGCTGATA+AGG 0.410351 3:+71290417 None:intergenic
CAAAAGAATTCCATTTGAAA+GGG 0.416153 3:+71293541 None:intergenic
AGTGGGAGCAAACAAAATTT+GGG 0.417509 3:+71290281 None:intergenic
TCTTCAATTTCTTCAACAAC+CGG 0.422064 3:+71290724 None:intergenic
AGTTGAGGTTAATGCTTTGT+TGG 0.423528 3:+71295584 None:intergenic
TCATTTACATCCCTTTCAAA+TGG 0.430625 3:-71293551 MsG0380015516.01.T01:CDS
ATTTCGAGGAGATTAGATTC+AGG 0.431126 3:-71292316 MsG0380015516.01.T01:intron
TTTGGTTATTTGTAGGTGCT+TGG 0.431263 3:-71295262 MsG0380015516.01.T01:intron
GAGTCTTCAAAGACACCTTC+AGG 0.436469 3:-71294264 MsG0380015516.01.T01:CDS
AATGTATTGATTGGCACGCC+GGG 0.448464 3:-71295088 MsG0380015516.01.T01:CDS
GGATAGTGGCGGCTTGAACG+GGG 0.450785 3:+71295484 None:intergenic
TTTAGCTGTTTGCTTTCTCA+TGG 0.452366 3:+71290800 None:intergenic
ATCCTCTGTGCCTGTCAACT+TGG 0.453170 3:+71290674 None:intergenic
TTTGGAAAGGTACTAGTCCT+TGG 0.453614 3:-71290353 MsG0380015516.01.T01:three_prime_UTR
TCTGTGAGAGCTTGAAGAAC+GGG 0.456416 3:+71295528 None:intergenic
AAGCCAGTTCTTCGAAGCTT+AGG 0.459046 3:+71294410 None:intergenic
ATATGTTGTTGGTGTTGTAA+TGG 0.461693 3:-71290607 MsG0380015516.01.T01:three_prime_UTR
TTTGGATTTCAAAAGCTTTG+AGG 0.461707 3:-71295032 MsG0380015516.01.T01:intron
GAGAGCTTGAAGAACGGGTT+CGG 0.462659 3:+71295533 None:intergenic
GATGAATATGCCAAGTTGAC+AGG 0.467389 3:-71290684 MsG0380015516.01.T01:CDS
ACAAAAGAATTCCATTTGAA+AGG 0.468025 3:+71293540 None:intergenic
ATGAAGAAAATTGAGGAAGA+AGG 0.468170 3:-71295115 MsG0380015516.01.T01:CDS
TAGAAGTCGAATTATGTTCA+AGG 0.469185 3:-71290175 MsG0380015516.01.T01:three_prime_UTR
GAAGGAGCAAATGTATTGAT+TGG 0.470143 3:-71295097 MsG0380015516.01.T01:CDS
TAATGCTTTGTTGGGGAACT+CGG 0.478400 3:+71295593 None:intergenic
CCCAAATGTGTTCGTACATA+GGG 0.481660 3:-71293282 MsG0380015516.01.T01:CDS
TGTTGTTGGTGTTGTAATGG+TGG 0.484754 3:-71290604 MsG0380015516.01.T01:three_prime_UTR
GGCAAATTAGCCACGGGACA+TGG 0.486232 3:-71292419 MsG0380015516.01.T01:CDS
GGGGATAGTGGCGGCTTGAA+CGG 0.488716 3:+71295482 None:intergenic
TGTTTAGTCTGATAGGATGC+AGG 0.491537 3:-71290207 MsG0380015516.01.T01:three_prime_UTR
GTTGGGGAACTCGGAGTCCA+TGG 0.492465 3:+71295602 None:intergenic
GTGGAAGAGCTTGCCAAAGC+AGG 0.492512 3:-71294362 MsG0380015516.01.T01:CDS
GTTTGCTTTCTCATGGCAGT+AGG 0.493178 3:+71290807 None:intergenic
GTTAAATCAATGCTACTTGT+TGG 0.495004 3:-71295160 MsG0380015516.01.T01:CDS
AGTTAAAGATATCAATTTCG+AGG 0.496514 3:-71292330 MsG0380015516.01.T01:CDS
CAAGTGGAATGACGAAAGCT+AGG 0.496591 3:+71295403 None:intergenic
TGTTGAAGAAATTGAAGAAA+GGG 0.497161 3:-71290719 MsG0380015516.01.T01:CDS
GAAGTCGGTCCTCCGAACTC+TGG 0.497228 3:+71290460 None:intergenic
TATAACATCAGGTGCATTGT+CGG 0.498976 3:+71293040 None:intergenic
GTAACAAAAGTTCCAGAGTT+CGG 0.505651 3:-71290472 MsG0380015516.01.T01:three_prime_UTR
AGCAGATATGAAGAAAATTG+AGG 0.509076 3:-71295122 MsG0380015516.01.T01:CDS
TTGTTGAAGAAATTGAAGAA+AGG 0.513692 3:-71290720 MsG0380015516.01.T01:CDS
GCTCGAACTTCAACCCTCAC+AGG 0.515886 3:+71294329 None:intergenic
TAAACCTCGGGTATAACATC+AGG 0.516672 3:+71293029 None:intergenic
GCTGATAGACTATTAGATAT+GGG 0.519123 3:-71294470 MsG0380015516.01.T01:CDS
GACACTGAACGCCGCAACCA+TGG 0.523809 3:-71295619 MsG0380015516.01.T01:exon
TGCTACTCAAACTCAGGCTG+TGG 0.524602 3:-71294381 MsG0380015516.01.T01:CDS
GATTACATGATATTATGAAT+CGG 0.526578 3:-71295063 MsG0380015516.01.T01:CDS
AACCTGGTGAGGTTTGGGAT+TGG 0.529734 3:+71295356 None:intergenic
TTCCAATCCCAAACCTCACC+AGG 0.530067 3:-71295358 MsG0380015516.01.T01:intron
ATTCTCTGCTACTCAAACTC+AGG 0.530389 3:-71294387 MsG0380015516.01.T01:CDS
GCTGCAGAGTAAGGGGATAG+TGG 0.534078 3:+71295470 None:intergenic
CGATTAATGTACATAGAAAG+TGG 0.534968 3:-71290390 MsG0380015516.01.T01:three_prime_UTR
TGTTGTCTTCTTATTACCAA+AGG 0.535024 3:-71293222 MsG0380015516.01.T01:intron
ACCTTCAGGTCTTCACATTG+AGG 0.536458 3:-71294250 MsG0380015516.01.T01:intron
AAGAGTTGACGCAAGAATAC+CGG 0.542711 3:-71290743 MsG0380015516.01.T01:CDS
ATTGCAACTTCCTTTAGTGC+CGG 0.543669 3:-71292393 MsG0380015516.01.T01:CDS
TGAAGAACGGGTTCGGAGAG+TGG 0.543714 3:+71295540 None:intergenic
ACCCAAATGTGTTCGTACAT+AGG 0.544504 3:-71293283 MsG0380015516.01.T01:CDS
GAACTCGGAGTCCATGGTTG+CGG 0.546229 3:+71295608 None:intergenic
AGATCGTGATGTCATGGAGA+AGG 0.548299 3:-71292604 MsG0380015516.01.T01:CDS
CGGCGAAGAATTTCGACAAG+TGG 0.548528 3:+71295387 None:intergenic
GAGTGATTATATCTCCTACA+AGG 0.549275 3:-71295240 MsG0380015516.01.T01:CDS
GTCTATCTTTCTCTGATCCA+AGG 0.550342 3:+71290336 None:intergenic
ACTGCTCGGCTGGGTAAACA+AGG 0.550811 3:-71293251 MsG0380015516.01.T01:CDS
GTCGCCGTCGATGCCGCCAC+CGG 0.552287 3:-71295438 MsG0380015516.01.T01:CDS
ATAGGGTTGGTCGAACTGCT+CGG 0.553877 3:-71293265 MsG0380015516.01.T01:CDS
AAATGTATTGATTGGCACGC+CGG 0.554629 3:-71295089 MsG0380015516.01.T01:CDS
TCTTTGTAGCTGCAGAGTAA+GGG 0.556900 3:+71295462 None:intergenic
GGAACCGGTGGCGGCATCGA+CGG 0.557986 3:+71295434 None:intergenic
CCGGCTGATAAGGTCTCTAT+CGG 0.558760 3:+71290427 None:intergenic
GTTGGTCGAACTGCTCGGCT+GGG 0.559137 3:-71293260 MsG0380015516.01.T01:CDS
TATATAGTCTGTCAGGGAGA+AGG 0.560987 3:-71293582 MsG0380015516.01.T01:intron
GTCTGTGAGAGCTTGAAGAA+CGG 0.568734 3:+71295527 None:intergenic
CATAACAGCGTAATCAGACA+TGG 0.570421 3:+71290631 None:intergenic
TAAACAAAGTGTCAAAGTCA+TGG 0.571095 3:-71290137 MsG0380015516.01.T01:three_prime_UTR
CACTTGTCGAAATTCTTCGC+CGG 0.571139 3:-71295386 MsG0380015516.01.T01:CDS
GATCGTGATGTCATGGAGAA+GGG 0.571489 3:-71292603 MsG0380015516.01.T01:CDS
ACATGATATTATGAATCGGA+TGG 0.579664 3:-71295059 MsG0380015516.01.T01:CDS
TGGTGTAGACTGTATAGTGC+AGG 0.579703 3:-71293483 MsG0380015516.01.T01:intron
AGCTTGCCAAAGCAGGATTG+AGG 0.581011 3:-71294355 MsG0380015516.01.T01:CDS
ACCTCAATGTGAAGACCTGA+AGG 0.582539 3:+71294249 None:intergenic
TGTACGGATGTTGCAGCACG+TGG 0.584350 3:-71293518 MsG0380015516.01.T01:CDS
ATAAATCAAGAGAGAAACAA+AGG 0.586055 3:-71290908 MsG0380015516.01.T01:CDS
ACGAACACATTTGGGTCTTG+AGG 0.586361 3:+71293290 None:intergenic
CCGATAGAGACCTTATCAGC+CGG 0.586661 3:-71290427 MsG0380015516.01.T01:three_prime_UTR
AACAAAAGATCGTGATGTCA+TGG 0.590128 3:-71292610 MsG0380015516.01.T01:CDS
CTTTGTAGCTGCAGAGTAAG+GGG 0.590827 3:+71295463 None:intergenic
AACACATTTGGGTCTTGAGG+AGG 0.592214 3:+71293293 None:intergenic
TAAGCAGACAGTTGAAGATG+AGG 0.592692 3:-71290766 MsG0380015516.01.T01:CDS
GCTGTAATATACTAGTCCAC+TGG 0.593012 3:+71290555 None:intergenic
TGAAATTGGCAAATTAGCCA+CGG 0.593432 3:-71292426 MsG0380015516.01.T01:CDS
GAGCACATTCTCTCTTGAAG+AGG 0.594936 3:+71293062 None:intergenic
AAATCAATGCTACTTGTTGG+TGG 0.597917 3:-71295157 MsG0380015516.01.T01:CDS
GAAATTGGCAAATTAGCCAC+GGG 0.598244 3:-71292425 MsG0380015516.01.T01:CDS
GCATCCTCACATGATTCTGT+TGG 0.598804 3:-71290534 MsG0380015516.01.T01:three_prime_UTR
TTTAACTGGTTCAAATCCCA+CGG 0.599568 3:+71292346 None:intergenic
AAGTGGAATGACGAAAGCTA+GGG 0.608754 3:+71295404 None:intergenic
AGTTTACCTACGTTTAAGCG+AGG 0.617253 3:+71290064 None:intergenic
CGCCACTCACTATCCACCGT+GGG 0.618119 3:-71292362 MsG0380015516.01.T01:CDS
AGTGATTATATCTCCTACAA+GGG 0.619719 3:-71295239 MsG0380015516.01.T01:CDS
TATGACCCTCGCTTAAACGT+AGG 0.620444 3:-71290070 MsG0380015516.01.T01:three_prime_UTR
AATCGGTAAATGTCACTCAC+CGG 0.624172 3:+71290408 None:intergenic
ATCGGCAACAAAATGGAAGT+CGG 0.624784 3:+71290445 None:intergenic
AATGTGTTCGTACATAGGGT+TGG 0.628554 3:-71293278 MsG0380015516.01.T01:CDS
AATGCTACTTGTTGGTGGAG+TGG 0.628643 3:-71295152 MsG0380015516.01.T01:CDS
GACAGTGCAGAGATTTGGAA+AGG 0.629243 3:-71290366 MsG0380015516.01.T01:three_prime_UTR
TGCACCTGATGTTATACCCG+AGG 0.631727 3:-71293033 MsG0380015516.01.T01:intron
GACATGTATACATCTTACAC+TGG 0.633670 3:-71290494 MsG0380015516.01.T01:three_prime_UTR
GCACGTGGACTTGACATACC+TGG 0.634273 3:-71293503 MsG0380015516.01.T01:CDS
GAAGAAAGGGACCATAGATG+AGG 0.634552 3:-71290706 MsG0380015516.01.T01:CDS
ATAATATCATGTAATCGCCC+CGG 0.635271 3:+71295070 None:intergenic
GAATGTTCTTAGATAACCAG+TGG 0.635946 3:-71290571 MsG0380015516.01.T01:three_prime_UTR
AGAACGGGTTCGGAGAGTGG+TGG 0.641488 3:+71295543 None:intergenic
ATCCCACGGTGGATAGTGAG+TGG 0.643637 3:+71292360 None:intergenic
GTTTACCTACGTTTAAGCGA+GGG 0.643703 3:+71290065 None:intergenic
TTGAGGTTAATGCTTTGTTG+GGG 0.644922 3:+71295586 None:intergenic
CATCCTATCAGACTAAACAA+AGG 0.646152 3:+71290211 None:intergenic
AGGATTGAGGAATCCTGTGA+GGG 0.652822 3:-71294342 MsG0380015516.01.T01:CDS
TGTCATGGAGAAGGGAGTCA+GGG 0.653830 3:-71292595 MsG0380015516.01.T01:CDS
TTGCAATAAGCCATGTCCCG+TGG 0.654749 3:+71292409 None:intergenic
TGCACTATACAGTCTACACC+AGG 0.665445 3:+71293485 None:intergenic
GCAGAGTAAGGGGATAGTGG+CGG 0.676114 3:+71295473 None:intergenic
GGAGAGGGAGGAACCTGGTG+AGG 0.681157 3:+71295345 None:intergenic
TAGGTCGGAGAAACGAGTTG+AGG 0.684963 3:+71295569 None:intergenic
ATGTATTGATTGGCACGCCG+GGG 0.688464 3:-71295087 MsG0380015516.01.T01:CDS
CAGGATTGAGGAATCCTGTG+AGG 0.689064 3:-71294343 MsG0380015516.01.T01:CDS
TGCCAAGTTGACAGGCACAG+AGG 0.710992 3:-71290676 MsG0380015516.01.T01:CDS
ACAAAAGTTCCAGAGTTCGG+AGG 0.713143 3:-71290469 MsG0380015516.01.T01:three_prime_UTR
GATGCCAACAGAATCATGTG+AGG 0.723756 3:+71290530 None:intergenic
ACGCCACTCACTATCCACCG+TGG 0.727058 3:-71292363 MsG0380015516.01.T01:CDS
CTGCTCGGCTGGGTAAACAA+GGG 0.728024 3:-71293250 MsG0380015516.01.T01:CDS
AACTGGTTCAAATCCCACGG+TGG 0.741727 3:+71292349 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAACTTCAAATTTTATA+GGG - Chr3:71294755-71294774 MsG0380015516.01.T01:intron 10.0%
!! AAATTAACCAAAAAAATGAA+GGG + Chr3:71291538-71291557 None:intergenic 15.0%
!! ATATTTCAGGATTTATTATT+TGG - Chr3:71291058-71291077 MsG0380015516.01.T01:intron 15.0%
!! TAAATTAACCAAAAAAATGA+AGG + Chr3:71291539-71291558 None:intergenic 15.0%
!!! ACATTATAATTTTTTTTGAG+CGG + Chr3:71291751-71291770 None:intergenic 15.0%
!!! CTTAAAACTTCAAATTTTAT+AGG - Chr3:71294754-71294773 MsG0380015516.01.T01:intron 15.0%
!!! TTTAATTTTGAAAATAGAAG+TGG - Chr3:71293917-71293936 MsG0380015516.01.T01:intron 15.0%
!! AAAAATAAATCTAACAGTGA+AGG + Chr3:71292903-71292922 None:intergenic 20.0%
!! AATGATTAACCTAATTGAAT+TGG + Chr3:71290372-71290391 None:intergenic 20.0%
!! ACATAATTGAATGTAATGTA+AGG - Chr3:71290930-71290949 MsG0380015516.01.T01:intron 20.0%
!! AGTAAAAGATAAGAGTTTAA+TGG + Chr3:71290865-71290884 None:intergenic 20.0%
!! ATGAATATTGACAATTAGAA+AGG + Chr3:71293416-71293435 None:intergenic 20.0%
!! ATTAAAAAGACTATAGATAG+TGG + Chr3:71295426-71295445 None:intergenic 20.0%
!! CTACCTATAACTAAAAAATA+GGG + Chr3:71294415-71294434 None:intergenic 20.0%
!! GATTACATGATATTATGAAT+CGG - Chr3:71290623-71290642 MsG0380015516.01.T01:three_prime_UTR 20.0%
!! GTAAAAGATAAGAGTTTAAT+GGG + Chr3:71290864-71290883 None:intergenic 20.0%
!! TAAAAGATAAGAGTTTAATG+GGG + Chr3:71290863-71290882 None:intergenic 20.0%
!! TAAACATGAAACATCTTATA+TGG + Chr3:71291596-71291615 None:intergenic 20.0%
!! TAAAGTTCGACAAAAATAAT+GGG + Chr3:71292052-71292071 None:intergenic 20.0%
!! TATGAAAATCAAAATTGAGT+TGG - Chr3:71294352-71294371 MsG0380015516.01.T01:CDS 20.0%
!! TATTTCTTCATATTTATCAC+TGG - Chr3:71292318-71292337 MsG0380015516.01.T01:CDS 20.0%
!! TCTACCTATAACTAAAAAAT+AGG + Chr3:71294416-71294435 None:intergenic 20.0%
!! TTAAAAAGACTATAGATAGT+GGG + Chr3:71295425-71295444 None:intergenic 20.0%
!! TTTACTGTTTGTATACTTAT+TGG - Chr3:71292068-71292087 MsG0380015516.01.T01:intron 20.0%
!!! ATTATTGTTACATTTTCCAA+GGG - Chr3:71294114-71294133 MsG0380015516.01.T01:intron 20.0%
!!! GTTAAGTTATCTTTAAAAAG+CGG - Chr3:71290762-71290781 MsG0380015516.01.T01:CDS 20.0%
!!! TATCCCTATTTTTTAGTTAT+AGG - Chr3:71294409-71294428 MsG0380015516.01.T01:CDS 20.0%
!!! TATTATTGTTACATTTTCCA+AGG - Chr3:71294113-71294132 MsG0380015516.01.T01:intron 20.0%
!!! TCTTTAAGCTTATCTTTTTA+TGG - Chr3:71292537-71292556 MsG0380015516.01.T01:intron 20.0%
!!! TGATCATAATTTTGTTATCA+GGG + Chr3:71293031-71293050 None:intergenic 20.0%
!!! TTAAGTTTTATTGATTGTCT+AGG - Chr3:71292933-71292952 MsG0380015516.01.T01:intron 20.0%
!!! TTGATCATAATTTTGTTATC+AGG + Chr3:71293032-71293051 None:intergenic 20.0%
!!! TTTAAGATTCCTTATATTTG+TGG - Chr3:71291126-71291145 MsG0380015516.01.T01:intron 20.0%
! ACAAAAGAATTCCATTTGAA+AGG + Chr3:71292149-71292168 None:intergenic 25.0%
! AGTTAAAGATATCAATTTCG+AGG - Chr3:71293356-71293375 MsG0380015516.01.T01:intron 25.0%
! ATAAATCAAGAGAGAAACAA+AGG - Chr3:71294778-71294797 MsG0380015516.01.T01:intron 25.0%
! ATGAAGAAATATTTGAACCA+CGG + Chr3:71292309-71292328 None:intergenic 25.0%
! ATTAATCTATGTCAATGTGT+AGG - Chr3:71292563-71292582 MsG0380015516.01.T01:CDS 25.0%
! ATTTGGGTATTAATAGGAAT+AGG - Chr3:71291150-71291169 MsG0380015516.01.T01:intron 25.0%
! CAAAAGAATTCCATTTGAAA+GGG + Chr3:71292148-71292167 None:intergenic 25.0%
! CACTTCATTATCACATAAAT+TGG + Chr3:71290404-71290423 None:intergenic 25.0%
! CACTTTCTATGTACATTAAT+CGG + Chr3:71295298-71295317 None:intergenic 25.0%
! CATATCTTCTAACAAGATAA+AGG - Chr3:71293786-71293805 MsG0380015516.01.T01:intron 25.0%
! CTTTATCTTGTTAGAAGATA+TGG + Chr3:71293788-71293807 None:intergenic 25.0%
! GATGTTTCATGTTTACTAAT+AGG - Chr3:71291601-71291620 MsG0380015516.01.T01:intron 25.0%
! GTAAAGTTCGACAAAAATAA+TGG + Chr3:71292053-71292072 None:intergenic 25.0%
! TAAAATATGGACAATGCAAA+GGG - Chr3:71293862-71293881 MsG0380015516.01.T01:intron 25.0%
! TAATATAGAAGCTAATCTCA+CGG + Chr3:71293544-71293563 None:intergenic 25.0%
! TCAAATTGAAAAATAAACCG+TGG - Chr3:71292289-71292308 MsG0380015516.01.T01:intron 25.0%
! TCGAAATTGATATCTTTAAC+TGG + Chr3:71293357-71293376 None:intergenic 25.0%
! TGTTGAAGAAATTGAAGAAA+GGG - Chr3:71294967-71294986 MsG0380015516.01.T01:intron 25.0%
! TTAAAAAGCGGTTACAAATT+AGG - Chr3:71290774-71290793 MsG0380015516.01.T01:CDS 25.0%
! TTAAAATATGGACAATGCAA+AGG - Chr3:71293861-71293880 MsG0380015516.01.T01:intron 25.0%
! TTAAAATTCAGCACAAGTTT+AGG + Chr3:71293891-71293910 None:intergenic 25.0%
! TTGTTGAAGAAATTGAAGAA+AGG - Chr3:71294966-71294985 MsG0380015516.01.T01:intron 25.0%
! TTTCATCTTGTTGAAGATAT+GGG + Chr3:71293734-71293753 None:intergenic 25.0%
!! AAATGGAATTCTTTTGTGTA+CGG - Chr3:71292152-71292171 MsG0380015516.01.T01:intron 25.0%
!! ATTTTTCTATATAGTCTGTC+AGG - Chr3:71292097-71292116 MsG0380015516.01.T01:intron 25.0%
!! TATACATGTCAGATCTTTTA+GGG + Chr3:71295182-71295201 None:intergenic 25.0%
!! TTATGTGATAATGAAGTGTT+TGG - Chr3:71290406-71290425 MsG0380015516.01.T01:three_prime_UTR 25.0%
!! TTATTGTTACATTTTCCAAG+GGG - Chr3:71294115-71294134 MsG0380015516.01.T01:intron 25.0%
!! TTTTTCTATATAGTCTGTCA+GGG - Chr3:71292098-71292117 MsG0380015516.01.T01:intron 25.0%
!!! AGATTAGCTTCTATATTACT+TGG - Chr3:71293546-71293565 MsG0380015516.01.T01:CDS 25.0%
!!! AGCTTGTTATGCTTAAAATA+TGG - Chr3:71293849-71293868 MsG0380015516.01.T01:intron 25.0%
!!! GAGTTTTGATCAATAAAATG+AGG - Chr3:71294667-71294686 MsG0380015516.01.T01:intron 25.0%
AACCTAATTGAATTGGAATG+AGG + Chr3:71290365-71290384 None:intergenic 30.0%
AAGCTCGAAAAGAAAAGAAA+AGG + Chr3:71291665-71291684 None:intergenic 30.0%
AATATAGAAGCTAATCTCAC+GGG + Chr3:71293543-71293562 None:intergenic 30.0%
ACATGATATTATGAATCGGA+TGG - Chr3:71290627-71290646 MsG0380015516.01.T01:three_prime_UTR 30.0%
ACCAATTACTACATCCTTAT+TGG + Chr3:71290741-71290760 None:intergenic 30.0%
AGCAGATATGAAGAAAATTG+AGG - Chr3:71290564-71290583 MsG0380015516.01.T01:three_prime_UTR 30.0%
AGTGATTATATCTCCTACAA+GGG - Chr3:71290447-71290466 MsG0380015516.01.T01:three_prime_UTR 30.0%
ATCAAGATCAACAAAGAACT+TGG + Chr3:71294498-71294517 None:intergenic 30.0%
ATGAAGAAAATTGAGGAAGA+AGG - Chr3:71290571-71290590 MsG0380015516.01.T01:three_prime_UTR 30.0%
ATTCAAATTGAGCTTCAGAT+TGG - Chr3:71294327-71294346 MsG0380015516.01.T01:CDS 30.0%
ATTGATTGTCTAGGTAAACA+CGG - Chr3:71292942-71292961 MsG0380015516.01.T01:intron 30.0%
ATTTGTTTCCCTGTTCAATT+AGG - Chr3:71293580-71293599 MsG0380015516.01.T01:intron 30.0%
CGATTAATGTACATAGAAAG+TGG - Chr3:71295296-71295315 MsG0380015516.01.T01:intron 30.0%
CTTTCATCTTGTTGAAGATA+TGG + Chr3:71293735-71293754 None:intergenic 30.0%
GCTGATAGACTATTAGATAT+GGG - Chr3:71291216-71291235 MsG0380015516.01.T01:intron 30.0%
GGATTTATTATTTGGTCATG+TGG - Chr3:71291066-71291085 MsG0380015516.01.T01:intron 30.0%
TAAACTAGAGATTAGATGTG+TGG - Chr3:71291481-71291500 MsG0380015516.01.T01:intron 30.0%
TAGAAGTCGAATTATGTTCA+AGG - Chr3:71295511-71295530 MsG0380015516.01.T01:CDS 30.0%
TCATTTACATCCCTTTCAAA+TGG - Chr3:71292135-71292154 MsG0380015516.01.T01:intron 30.0%
TCCTTATATTTGTGGCATTT+GGG - Chr3:71291134-71291153 MsG0380015516.01.T01:intron 30.0%
TCTTCAATTTCTTCAACAAC+CGG + Chr3:71294965-71294984 None:intergenic 30.0%
TCTTTGTTGATCTTGATTGA+GGG - Chr3:71294501-71294520 MsG0380015516.01.T01:intron 30.0%
TGTACTTGGAATAAGTTAGA+AGG + Chr3:71294605-71294624 None:intergenic 30.0%
TGTTAGGTGAAACTCATTAA+TGG - Chr3:71294016-71294035 MsG0380015516.01.T01:intron 30.0%
TGTTGTCTTCTTATTACCAA+AGG - Chr3:71292464-71292483 MsG0380015516.01.T01:intron 30.0%
TTACCAATGAAACACAGAAA+TGG - Chr3:71290888-71290907 MsG0380015516.01.T01:CDS 30.0%
TTCAAATTGAGCTTCAGATT+GGG - Chr3:71294328-71294347 MsG0380015516.01.T01:CDS 30.0%
TTCCTTATATTTGTGGCATT+TGG - Chr3:71291133-71291152 MsG0380015516.01.T01:intron 30.0%
TTCGCTAAAGTCGAAATAAA+AGG + Chr3:71290505-71290524 None:intergenic 30.0%
TTCTTTGTTGATCTTGATTG+AGG - Chr3:71294500-71294519 MsG0380015516.01.T01:intron 30.0%
TTGAATGTAATGTAAGGTGT+CGG - Chr3:71290936-71290955 MsG0380015516.01.T01:intron 30.0%
TTGTTATCAGGGAATTGAAA+GGG + Chr3:71293020-71293039 None:intergenic 30.0%
TTTCAAAACTGACAAATGCT+TGG + Chr3:71291983-71292002 None:intergenic 30.0%
TTTGGATTTCAAAAGCTTTG+AGG - Chr3:71290654-71290673 MsG0380015516.01.T01:exon 30.0%
! ACATCTAATCTCTAGTTTAC+TGG + Chr3:71291480-71291499 None:intergenic 30.0%
! ATACATGTCAGATCTTTTAG+GGG + Chr3:71295181-71295200 None:intergenic 30.0%
! ATCACTGCTCTTATATTTTC+AGG - Chr3:71293147-71293166 MsG0380015516.01.T01:intron 30.0%
! GTATACATGTCAGATCTTTT+AGG + Chr3:71295183-71295202 None:intergenic 30.0%
! GTTAAATCAATGCTACTTGT+TGG - Chr3:71290526-71290545 MsG0380015516.01.T01:three_prime_UTR 30.0%
! TAAACAAAGTGTCAAAGTCA+TGG - Chr3:71295549-71295568 MsG0380015516.01.T01:CDS 30.0%
! TACTGTGTTGTCATGTTTTA+TGG - Chr3:71292704-71292723 MsG0380015516.01.T01:intron 30.0%
! TATGAATCGGATGGATATTT+TGG - Chr3:71290636-71290655 MsG0380015516.01.T01:three_prime_UTR 30.0%
! TCATGTTTTATGGATGCAAT+AGG - Chr3:71292714-71292733 MsG0380015516.01.T01:intron 30.0%
! TCTTCAAGATACTTTGAAGA+GGG - Chr3:71294443-71294462 MsG0380015516.01.T01:CDS 30.0%
! TGAAGTGTTTGGTTATTTGT+AGG - Chr3:71290417-71290436 MsG0380015516.01.T01:three_prime_UTR 30.0%
! TTCTTCAAGATACTTTGAAG+AGG - Chr3:71294442-71294461 MsG0380015516.01.T01:CDS 30.0%
! TTTGTTATCAGGGAATTGAA+AGG + Chr3:71293021-71293040 None:intergenic 30.0%
! TTTTAAGCATAACAAGCTCT+CGG + Chr3:71293847-71293866 None:intergenic 30.0%
!! ATATGTTGTTGGTGTTGTAA+TGG - Chr3:71295079-71295098 MsG0380015516.01.T01:CDS 30.0%
!! TAATGTGCTGATTACCTTAT+AGG - Chr3:71292852-71292871 MsG0380015516.01.T01:intron 30.0%
!! TCCAAGTACACTTTTTAACT+CGG - Chr3:71294615-71294634 MsG0380015516.01.T01:intron 30.0%
!! TGTTCTAGAGAGAATATTTC+AGG - Chr3:71291045-71291064 MsG0380015516.01.T01:intron 30.0%
!!! CTCTTTGGTTTTTTAGGTTT+TGG + Chr3:71294846-71294865 None:intergenic 30.0%
!!! GTAGAATCCCTTCATTTTTT+TGG - Chr3:71291528-71291547 MsG0380015516.01.T01:intron 30.0%
AAATTCAGCACAAGTTTAGG+TGG + Chr3:71293888-71293907 None:intergenic 35.0%
AACAAAAGATCGTGATGTCA+TGG - Chr3:71293076-71293095 MsG0380015516.01.T01:CDS 35.0%
AAGCAGTAACCCCTATTTAT+AGG + Chr3:71293623-71293642 None:intergenic 35.0%
AATCTATGTCAATGTGTAGG+AGG - Chr3:71292566-71292585 MsG0380015516.01.T01:CDS 35.0%
AATTGAATTGGAATGAGGAG+AGG + Chr3:71290360-71290379 None:intergenic 35.0%
ACCCAAATGCCACAAATATA+AGG + Chr3:71291138-71291157 None:intergenic 35.0%
ACTCTACCGGAATACTATTA+CGG + Chr3:71292799-71292818 None:intergenic 35.0%
ACTGCTAATCCTAATTGAAC+AGG + Chr3:71293592-71293611 None:intergenic 35.0%
AGAAGCCTTTCAAAACAGAA+AGG + Chr3:71291906-71291925 None:intergenic 35.0%
AGCAGTAACCCCTATTTATA+GGG + Chr3:71293622-71293641 None:intergenic 35.0%
AGCTTATTATATCTAGCACG+CGG - Chr3:71293819-71293838 MsG0380015516.01.T01:intron 35.0%
AGGTGGAAAGAACTTGAAAT+TGG - Chr3:71293246-71293265 MsG0380015516.01.T01:CDS 35.0%
AGTGGGAGCAAACAAAATTT+GGG + Chr3:71295408-71295427 None:intergenic 35.0%
AGTTGAGGTTAATGCTTTGT+TGG + Chr3:71290105-71290124 None:intergenic 35.0%
ATAATATCATGTAATCGCCC+CGG + Chr3:71290619-71290638 None:intergenic 35.0%
ATCATACTGTGGAATAACAG+AGG + Chr3:71292373-71292392 None:intergenic 35.0%
ATCGATTGACAACCATAACA+AGG + Chr3:71292746-71292765 None:intergenic 35.0%
ATTGAATTGGAATGAGGAGA+GGG + Chr3:71290359-71290378 None:intergenic 35.0%
ATTTCGAGGAGATTAGATTC+AGG - Chr3:71293370-71293389 MsG0380015516.01.T01:intron 35.0%
CACATTAGTATGTTGTAGCA+GGG + Chr3:71292839-71292858 None:intergenic 35.0%
CATCCTATCAGACTAAACAA+AGG + Chr3:71295478-71295497 None:intergenic 35.0%
CATGTTCACAAAGAAGAACT+GGG + Chr3:71292976-71292995 None:intergenic 35.0%
CGGTGCAAAATAAATTCACA+CGG - Chr3:71290832-71290851 MsG0380015516.01.T01:CDS 35.0%
CTCCTCATTCCAATTCAATT+AGG - Chr3:71290360-71290379 MsG0380015516.01.T01:three_prime_UTR 35.0%
CTGCTAATCCTAATTGAACA+GGG + Chr3:71293591-71293610 None:intergenic 35.0%
GAACTACCGTAATAGTATTC+CGG - Chr3:71292790-71292809 MsG0380015516.01.T01:intron 35.0%
GAATGTTCTTAGATAACCAG+TGG - Chr3:71295115-71295134 MsG0380015516.01.T01:CDS 35.0%
GACATGTATACATCTTACAC+TGG - Chr3:71295192-71295211 MsG0380015516.01.T01:CDS 35.0%
GAGTGATTATATCTCCTACA+AGG - Chr3:71290446-71290465 MsG0380015516.01.T01:three_prime_UTR 35.0%
GATAATCAGACCATTCCAAA+AGG + Chr3:71293648-71293667 None:intergenic 35.0%
GATCTTGATTGAGGGATTAT+GGG - Chr3:71294509-71294528 MsG0380015516.01.T01:intron 35.0%
GCAATATAGTGTGTTCCTAT+TGG - Chr3:71290805-71290824 MsG0380015516.01.T01:CDS 35.0%
GCCAATAAGGATGTAGTAAT+TGG - Chr3:71290737-71290756 MsG0380015516.01.T01:CDS 35.0%
GGCTGATAGACTATTAGATA+TGG - Chr3:71291215-71291234 MsG0380015516.01.T01:intron 35.0%
GGTTACAAATTAGGCTTAGA+TGG - Chr3:71290783-71290802 MsG0380015516.01.T01:CDS 35.0%
GTAACAAAAGTTCCAGAGTT+CGG - Chr3:71295214-71295233 MsG0380015516.01.T01:CDS 35.0%
GTCTTGTCTCCCTATAAATA+GGG - Chr3:71293610-71293629 MsG0380015516.01.T01:intron 35.0%
TAAAAGCCGAGAATAAACCT+CGG + Chr3:71292673-71292692 None:intergenic 35.0%
TAGTGGGAGCAAACAAAATT+TGG + Chr3:71295409-71295428 None:intergenic 35.0%
TATAACATCAGGTGCATTGT+CGG + Chr3:71292649-71292668 None:intergenic 35.0%
TCAAATTGAGCTTCAGATTG+GGG - Chr3:71294329-71294348 MsG0380015516.01.T01:CDS 35.0%
TCATGTTCACAAAGAAGAAC+TGG + Chr3:71292977-71292996 None:intergenic 35.0%
TCGAAAGACAACACGAATAT+AGG + Chr3:71294578-71294597 None:intergenic 35.0%
TCGATTGACAACCATAACAA+GGG + Chr3:71292745-71292764 None:intergenic 35.0%
TCTTGTCTCCCTATAAATAG+GGG - Chr3:71293611-71293630 MsG0380015516.01.T01:intron 35.0%
TGAAATTGGCAAATTAGCCA+CGG - Chr3:71293260-71293279 MsG0380015516.01.T01:CDS 35.0%
TGATAGCATTTATCTGCTTC+TGG + Chr3:71291245-71291264 None:intergenic 35.0%
TGATCTTGATTGAGGGATTA+TGG - Chr3:71294508-71294527 MsG0380015516.01.T01:intron 35.0%
TGATTACCTTATAGGCTGAA+TGG - Chr3:71292860-71292879 MsG0380015516.01.T01:intron 35.0%
TGTGGCATTTGGGTATTAAT+AGG - Chr3:71291144-71291163 MsG0380015516.01.T01:intron 35.0%
TTATACCCGAGGTTTATTCT+CGG - Chr3:71292664-71292683 MsG0380015516.01.T01:intron 35.0%
TTTAAGCATAACAAGCTCTC+GGG + Chr3:71293846-71293865 None:intergenic 35.0%
TTTAGCTGTTTGCTTTCTCA+TGG + Chr3:71294889-71294908 None:intergenic 35.0%
TTTGAAAATAGAAGTGGCCA+TGG - Chr3:71293923-71293942 MsG0380015516.01.T01:intron 35.0%
TTTGGTTATTTGTAGGTGCT+TGG - Chr3:71290424-71290443 MsG0380015516.01.T01:three_prime_UTR 35.0%
! AAATCAATGCTACTTGTTGG+TGG - Chr3:71290529-71290548 MsG0380015516.01.T01:three_prime_UTR 35.0%
! ACATTGAGGTATTACCTATG+TGG - Chr3:71291450-71291469 MsG0380015516.01.T01:intron 35.0%
! ACCGAGTTAAAAAGTGTACT+TGG + Chr3:71294619-71294638 None:intergenic 35.0%
! AGTCTTGTCTCCCTATAAAT+AGG - Chr3:71293609-71293628 MsG0380015516.01.T01:intron 35.0%
! ATGCTTTCAATCAGAAGTGT+CGG - Chr3:71290984-71291003 MsG0380015516.01.T01:intron 35.0%
! CTTCAAGATACTTTGAAGAG+GGG - Chr3:71294444-71294463 MsG0380015516.01.T01:CDS 35.0%
! GAAGGAGCAAATGTATTGAT+TGG - Chr3:71290589-71290608 MsG0380015516.01.T01:three_prime_UTR 35.0%
! GTTCCTTTGTTTAGTCTGAT+AGG - Chr3:71295472-71295491 MsG0380015516.01.T01:CDS 35.0%
! GTTGAGGTTAATGCTTTGTT+GGG + Chr3:71290104-71290123 None:intergenic 35.0%
! TAAGCAAGTTTTTACGCTGA+CGG - Chr3:71290715-71290734 MsG0380015516.01.T01:CDS 35.0%
! TGAGCTCAAGTACTTTTCTA+TGG + Chr3:71294205-71294224 None:intergenic 35.0%
! TGTTTTATGGATGCAATAGG+AGG - Chr3:71292717-71292736 MsG0380015516.01.T01:intron 35.0%
! TTGAGGTTAATGCTTTGTTG+GGG + Chr3:71290103-71290122 None:intergenic 35.0%
! TTGCCATTTCTGTGTTTCAT+TGG + Chr3:71290894-71290913 None:intergenic 35.0%
! TTTAACTGGTTCAAATCCCA+CGG + Chr3:71293343-71293362 None:intergenic 35.0%
!! AAGAGTGTCTCTATGTAAGT+AGG + Chr3:71293957-71293976 None:intergenic 35.0%
!! AATGTTTTAGATTCGTTCCG+CGG - Chr3:71293052-71293071 MsG0380015516.01.T01:CDS 35.0%
!! TACTGCTTAACCTTTTGGAA+TGG - Chr3:71293635-71293654 MsG0380015516.01.T01:intron 35.0%
!! TATTTCCATGTTGACTCTAC+CGG + Chr3:71292812-71292831 None:intergenic 35.0%
!! TTGTGCTTGTGTTGACTATT+GGG - Chr3:71291865-71291884 MsG0380015516.01.T01:intron 35.0%
!! TTTTTGAGCGGTTCTTAACA+AGG + Chr3:71291739-71291758 None:intergenic 35.0%
!!! GCAGATTTTGATTTTGGATG+AGG - Chr3:71291194-71291213 MsG0380015516.01.T01:intron 35.0%
!!! GGAGTTCTCTTTGGTTTTTT+AGG + Chr3:71294852-71294871 None:intergenic 35.0%
!!! GTGTGTGCAGATTTTGATTT+TGG - Chr3:71291188-71291207 MsG0380015516.01.T01:intron 35.0%
AAAAGCCGAGAATAAACCTC+GGG + Chr3:71292672-71292691 None:intergenic 40.0%
AAGAGTTGACGCAAGAATAC+CGG - Chr3:71294943-71294962 MsG0380015516.01.T01:intron 40.0%
AAGTGAGAAGGTTCTTGTCA+TGG + Chr3:71293991-71294010 None:intergenic 40.0%
AAGTGGAATGACGAAAGCTA+GGG + Chr3:71290285-71290304 None:intergenic 40.0%
AATAGGAGGATCCCTTGTTA+TGG - Chr3:71292731-71292750 MsG0380015516.01.T01:intron 40.0%
AATCGGTAAATGTCACTCAC+CGG + Chr3:71295281-71295300 None:intergenic 40.0%
AATGTGTTCGTACATAGGGT+TGG - Chr3:71292408-71292427 MsG0380015516.01.T01:CDS 40.0%
ACCCAAATGTGTTCGTACAT+AGG - Chr3:71292403-71292422 MsG0380015516.01.T01:CDS 40.0%
ACCCTATGTACGAACACATT+TGG + Chr3:71292408-71292427 None:intergenic 40.0%
AGCTCACGAATGAGCTTATT+AGG - Chr3:71293753-71293772 MsG0380015516.01.T01:intron 40.0%
AGGAAATCTACAAGCTGTGA+CGG + Chr3:71291719-71291738 None:intergenic 40.0%
AGTGTGTTCCTATTGGATGT+CGG - Chr3:71290812-71290831 MsG0380015516.01.T01:CDS 40.0%
ATCGGCAACAAAATGGAAGT+CGG + Chr3:71295244-71295263 None:intergenic 40.0%
ATTCTCTGCTACTCAAACTC+AGG - Chr3:71291299-71291318 MsG0380015516.01.T01:intron 40.0%
ATTGCAACTTCCTTTAGTGC+CGG - Chr3:71293293-71293312 MsG0380015516.01.T01:CDS 40.0%
CATAACAGCGTAATCAGACA+TGG + Chr3:71295058-71295077 None:intergenic 40.0%
CATGTCTGATTACGCTGTTA+TGG - Chr3:71295056-71295075 MsG0380015516.01.T01:CDS 40.0%
CCCAAATGTGTTCGTACATA+GGG - Chr3:71292404-71292423 MsG0380015516.01.T01:CDS 40.0%
CCCTATGTACGAACACATTT+GGG + Chr3:71292407-71292426 None:intergenic 40.0%
CGCTGTTATGGATATGTTGT+TGG - Chr3:71295068-71295087 MsG0380015516.01.T01:CDS 40.0%
CTGCTTCATCTTTCCATGAA+GGG + Chr3:71291938-71291957 None:intergenic 40.0%
GAAATTGGCAAATTAGCCAC+GGG - Chr3:71293261-71293280 MsG0380015516.01.T01:CDS 40.0%
GATACTTGTGACAACACCTT+TGG + Chr3:71292483-71292502 None:intergenic 40.0%
GCACATTAGTATGTTGTAGC+AGG + Chr3:71292840-71292859 None:intergenic 40.0%
GCTGTAATATACTAGTCCAC+TGG + Chr3:71295134-71295153 None:intergenic 40.0%
GGCATATTCATCCTCATCTA+TGG + Chr3:71294994-71295013 None:intergenic 40.0%
GTAAGTAGGAGTTTGATCCA+TGG + Chr3:71293943-71293962 None:intergenic 40.0%
GTCTATCTTTCTCTGATCCA+AGG + Chr3:71295353-71295372 None:intergenic 40.0%
TAAACCTCGGGTATAACATC+AGG + Chr3:71292660-71292679 None:intergenic 40.0%
TAAGCAGACAGTTGAAGATG+AGG - Chr3:71294920-71294939 MsG0380015516.01.T01:intron 40.0%
TATATAGTCTGTCAGGGAGA+AGG - Chr3:71292104-71292123 MsG0380015516.01.T01:intron 40.0%
TCTTTGTAGCTGCAGAGTAA+GGG + Chr3:71290227-71290246 None:intergenic 40.0%
TGAACTGTTCTCACTCTTAC+AGG - Chr3:71293226-71293245 MsG0380015516.01.T01:CDS 40.0%
TGGCTTCTTTCTTTACTTGC+AGG + Chr3:71294812-71294831 None:intergenic 40.0%
TGTTTAGTCTGATAGGATGC+AGG - Chr3:71295479-71295498 MsG0380015516.01.T01:CDS 40.0%
! AAGATACTTTGAAGAGGGGA+GGG - Chr3:71294448-71294467 MsG0380015516.01.T01:CDS 40.0%
! CTTCTGATTGAAAGCATGTC+TGG + Chr3:71290981-71291000 None:intergenic 40.0%
! GATGAATATGCCAAGTTGAC+AGG - Chr3:71295002-71295021 MsG0380015516.01.T01:intron 40.0%
! TAATGCTTTGTTGGGGAACT+CGG + Chr3:71290096-71290115 None:intergenic 40.0%
! TGTTACATTTTCCAAGGGGA+GGG - Chr3:71294119-71294138 MsG0380015516.01.T01:intron 40.0%
! TTGTTACATTTTCCAAGGGG+AGG - Chr3:71294118-71294137 MsG0380015516.01.T01:intron 40.0%
!! AAATGTATTGATTGGCACGC+CGG - Chr3:71290597-71290616 MsG0380015516.01.T01:three_prime_UTR 40.0%
!! ATTTTGCACCGACATCCAAT+AGG + Chr3:71290823-71290842 None:intergenic 40.0%
!! CTTGTGCTTGTGTTGACTAT+TGG - Chr3:71291864-71291883 MsG0380015516.01.T01:intron 40.0%
!! TGTTGTTGGTGTTGTAATGG+TGG - Chr3:71295082-71295101 MsG0380015516.01.T01:CDS 40.0%
!! TTTGGAAAGGTACTAGTCCT+TGG - Chr3:71295333-71295352 MsG0380015516.01.T01:intron 40.0%
!!! AGGTTTTGGCTCTTTCTCTT+TGG + Chr3:71294832-71294851 None:intergenic 40.0%
AACACATTTGGGTCTTGAGG+AGG + Chr3:71292396-71292415 None:intergenic 45.0%
AAGCCAGTTCTTCGAAGCTT+AGG + Chr3:71291279-71291298 None:intergenic 45.0%
AAGTACTTGAGCTCAGCAGT+TGG - Chr3:71294210-71294229 MsG0380015516.01.T01:intron 45.0%
ACAAAAGTTCCAGAGTTCGG+AGG - Chr3:71295217-71295236 MsG0380015516.01.T01:CDS 45.0%
ACCTCAATGTGAAGACCTGA+AGG + Chr3:71291440-71291459 None:intergenic 45.0%
ACCTTCAGGTCTTCACATTG+AGG - Chr3:71291436-71291455 MsG0380015516.01.T01:intron 45.0%
ACGAACACATTTGGGTCTTG+AGG + Chr3:71292399-71292418 None:intergenic 45.0%
ACTGTTCTCACTCTTACAGG+TGG - Chr3:71293229-71293248 MsG0380015516.01.T01:CDS 45.0%
AGATCGTGATGTCATGGAGA+AGG - Chr3:71293082-71293101 MsG0380015516.01.T01:CDS 45.0%
AGGATTCCTCAATCCTGCTT+TGG + Chr3:71291340-71291359 None:intergenic 45.0%
AGGATTGAGGAATCCTGTGA+GGG - Chr3:71291344-71291363 MsG0380015516.01.T01:intron 45.0%
AGTTTACTGGCATGCCACAT+AGG + Chr3:71291467-71291486 None:intergenic 45.0%
CAAGTGGAATGACGAAAGCT+AGG + Chr3:71290286-71290305 None:intergenic 45.0%
CACTTGTCGAAATTCTTCGC+CGG - Chr3:71290300-71290319 MsG0380015516.01.T01:three_prime_UTR 45.0%
CCTAACAGCTTGAAGTGAGA+AGG + Chr3:71294003-71294022 None:intergenic 45.0%
CCTGCTTCATCTTTCCATGA+AGG + Chr3:71291939-71291958 None:intergenic 45.0%
CCTTCATGGAAAGATGAAGC+AGG - Chr3:71291936-71291955 MsG0380015516.01.T01:intron 45.0%
CCTTCTCACTTCAAGCTGTT+AGG - Chr3:71294000-71294019 MsG0380015516.01.T01:intron 45.0%
CCTTTCAAAACAGAAAGGCG+AGG + Chr3:71291901-71291920 None:intergenic 45.0%
CTTGATTGAGGGATTATGGG+TGG - Chr3:71294512-71294531 MsG0380015516.01.T01:intron 45.0%
CTTGCAGTACTTGGAATGTG+AGG - Chr3:71291682-71291701 MsG0380015516.01.T01:intron 45.0%
CTTTCCATGAAGGGAGATCA+AGG + Chr3:71291929-71291948 None:intergenic 45.0%
CTTTGTAGCTGCAGAGTAAG+GGG + Chr3:71290226-71290245 None:intergenic 45.0%
GAAGAAAGGGACCATAGATG+AGG - Chr3:71294980-71294999 MsG0380015516.01.T01:intron 45.0%
GACAGTGCAGAGATTTGGAA+AGG - Chr3:71295320-71295339 MsG0380015516.01.T01:intron 45.0%
GAGCACATTCTCTCTTGAAG+AGG + Chr3:71292627-71292646 None:intergenic 45.0%
GAGTCTTCAAAGACACCTTC+AGG - Chr3:71291422-71291441 MsG0380015516.01.T01:intron 45.0%
GATCAGCCATTCAGCCTATA+AGG + Chr3:71292869-71292888 None:intergenic 45.0%
GATCGTGATGTCATGGAGAA+GGG - Chr3:71293083-71293102 MsG0380015516.01.T01:CDS 45.0%
GATGCCAACAGAATCATGTG+AGG + Chr3:71295159-71295178 None:intergenic 45.0%
GCATCCTCACATGATTCTGT+TGG - Chr3:71295152-71295171 MsG0380015516.01.T01:CDS 45.0%
GGTACTTCAGGAGTTCTCTT+TGG + Chr3:71294861-71294880 None:intergenic 45.0%
GGTCTCTATCGGCAACAAAA+TGG + Chr3:71295251-71295270 None:intergenic 45.0%
GTATTCCGGTAGAGTCAACA+TGG - Chr3:71292804-71292823 MsG0380015516.01.T01:intron 45.0%
GTCTGTGAGAGCTTGAAGAA+CGG + Chr3:71290162-71290181 None:intergenic 45.0%
GTCTTTGTAGCTGCAGAGTA+AGG + Chr3:71290228-71290247 None:intergenic 45.0%
GTTTGCTTTCTCATGGCAGT+AGG + Chr3:71294882-71294901 None:intergenic 45.0%
TATGACCCTCGCTTAAACGT+AGG - Chr3:71295616-71295635 MsG0380015516.01.T01:exon 45.0%
TCACAAAGAAGAACTGGGAC+TGG + Chr3:71292971-71292990 None:intergenic 45.0%
TCTGTGAGAGCTTGAAGAAC+GGG + Chr3:71290161-71290180 None:intergenic 45.0%
TCTTGAGGAGGATCATACTG+TGG + Chr3:71292384-71292403 None:intergenic 45.0%
TGCACTATACAGTCTACACC+AGG + Chr3:71292204-71292223 None:intergenic 45.0%
TGGTGTAGACTGTATAGTGC+AGG - Chr3:71292203-71292222 MsG0380015516.01.T01:intron 45.0%
TTCTCCTTGATCTCCCTTCA+TGG - Chr3:71291922-71291941 MsG0380015516.01.T01:intron 45.0%
TTGCCTAAGCTTCGAAGAAC+TGG - Chr3:71291273-71291292 MsG0380015516.01.T01:intron 45.0%
! AATGCTACTTGTTGGTGGAG+TGG - Chr3:71290534-71290553 MsG0380015516.01.T01:three_prime_UTR 45.0%
! AGTGAGTGGCGTTTTATCTC+CGG + Chr3:71293315-71293334 None:intergenic 45.0%
! ATCACGATCTTTTGTTGCCG+CGG + Chr3:71293072-71293091 None:intergenic 45.0%
! CAAGATACTTTGAAGAGGGG+AGG - Chr3:71294447-71294466 MsG0380015516.01.T01:CDS 45.0%
! CGTTTTATCTCCGGCACTAA+AGG + Chr3:71293306-71293325 None:intergenic 45.0%
! GACGAAAGCTAGGGTTTTAC+CGG + Chr3:71290276-71290295 None:intergenic 45.0%
! GGGGTTACTGCTTAACCTTT+TGG - Chr3:71293630-71293649 MsG0380015516.01.T01:intron 45.0%
! TTTTACGCTGACGGCCAATA+AGG - Chr3:71290724-71290743 MsG0380015516.01.T01:CDS 45.0%
!! AATGTATTGATTGGCACGCC+GGG - Chr3:71290598-71290617 MsG0380015516.01.T01:three_prime_UTR 45.0%
!! CCTCGCCTTTCTGTTTTGAA+AGG - Chr3:71291898-71291917 MsG0380015516.01.T01:intron 45.0%
!! CTTGTGTTGACTATTGGGAG+TGG - Chr3:71291870-71291889 MsG0380015516.01.T01:intron 45.0%
!! CTTTCAATCAGAAGTGTCGG+TGG - Chr3:71290987-71291006 MsG0380015516.01.T01:intron 45.0%
!! CTTTTCGAGCTTGCAGTACT+TGG - Chr3:71291673-71291692 MsG0380015516.01.T01:intron 45.0%
!! GTAATGTAAGGTGTCGGTGT+CGG - Chr3:71290942-71290961 MsG0380015516.01.T01:intron 45.0%
!! TAATGTAAGGTGTCGGTGTC+GGG - Chr3:71290943-71290962 MsG0380015516.01.T01:intron 45.0%
!! TGGATTATAGTAAGAGCGCC+AGG + Chr3:71291576-71291595 None:intergenic 45.0%
AGCTTGCCAAAGCAGGATTG+AGG - Chr3:71291331-71291350 MsG0380015516.01.T01:intron 50.0%
ATCCTCTGTGCCTGTCAACT+TGG + Chr3:71295015-71295034 None:intergenic 50.0%
ATGTCATGGAGAAGGGAGTC+AGG - Chr3:71293090-71293109 MsG0380015516.01.T01:CDS 50.0%
CAGGATTGAGGAATCCTGTG+AGG - Chr3:71291343-71291362 MsG0380015516.01.T01:intron 50.0%
CCGATAGAGACCTTATCAGC+CGG - Chr3:71295259-71295278 MsG0380015516.01.T01:intron 50.0%
CCGGCTGATAAGGTCTCTAT+CGG + Chr3:71295262-71295281 None:intergenic 50.0%
CGGCGAAGAATTTCGACAAG+TGG + Chr3:71290302-71290321 None:intergenic 50.0%
CTCATGGCAGTAGGTACTTC+AGG + Chr3:71294873-71294892 None:intergenic 50.0%
GAATTGGAATGAGGAGAGGG+AGG + Chr3:71290356-71290375 None:intergenic 50.0%
GTGGTGACAGTGCAGAGATT+TGG - Chr3:71295315-71295334 MsG0380015516.01.T01:intron 50.0%
TAGGTCGGAGAAACGAGTTG+AGG + Chr3:71290120-71290139 None:intergenic 50.0%
TGCACCTGATGTTATACCCG+AGG - Chr3:71292653-71292672 MsG0380015516.01.T01:intron 50.0%
TGCGACGCTAATTCCCTTGT+AGG + Chr3:71290463-71290482 None:intergenic 50.0%
TGCTACTCAAACTCAGGCTG+TGG - Chr3:71291305-71291324 MsG0380015516.01.T01:intron 50.0%
TGTCATGGAGAAGGGAGTCA+GGG - Chr3:71293091-71293110 MsG0380015516.01.T01:CDS 50.0%
TTCATCAATTGCCCTCCCCT+TGG + Chr3:71294133-71294152 None:intergenic 50.0%
TTCCAATCCCAAACCTCACC+AGG - Chr3:71290328-71290347 MsG0380015516.01.T01:three_prime_UTR 50.0%
TTGCAATAAGCCATGTCCCG+TGG + Chr3:71293280-71293299 None:intergenic 50.0%
TTTAGCAGCGAGTCTTTGCC+TGG - Chr3:71291555-71291574 MsG0380015516.01.T01:intron 50.0%
! AACCTGGTGAGGTTTGGGAT+TGG + Chr3:71290333-71290352 None:intergenic 50.0%
! AACTGGTTCAAATCCCACGG+TGG + Chr3:71293340-71293359 None:intergenic 50.0%
! ACTTTGAAGAGGGGAGGGAT+TGG - Chr3:71294453-71294472 MsG0380015516.01.T01:CDS 50.0%
! AGCTAGGGTTTTACCGGAAC+CGG + Chr3:71290270-71290289 None:intergenic 50.0%
! ATGTCACTCACCGGCTGATA+AGG + Chr3:71295272-71295291 None:intergenic 50.0%
! CTTTGAAGAGGGGAGGGATT+GGG - Chr3:71294454-71294473 MsG0380015516.01.T01:CDS 50.0%
! GAGAGCTTGAAGAACGGGTT+CGG + Chr3:71290156-71290175 None:intergenic 50.0%
! GTGTTGTAATGGTGGAGTGC+TGG - Chr3:71295090-71295109 MsG0380015516.01.T01:CDS 50.0%
! GTTCGGAGAGTGGTGGTTTT+AGG + Chr3:71290139-71290158 None:intergenic 50.0%
!! ATAGGGTTGGTCGAACTGCT+CGG - Chr3:71292421-71292440 MsG0380015516.01.T01:CDS 50.0%
!! ATGTATTGATTGGCACGCCG+GGG - Chr3:71290599-71290618 MsG0380015516.01.T01:three_prime_UTR 50.0%
!! GTTTGGGATTGGAAGCGTTC+CGG + Chr3:71290322-71290341 None:intergenic 50.0%
!!! GGAGAGTGGTGGTTTTAGGT+CGG + Chr3:71290135-71290154 None:intergenic 50.0%
AATGAGGAGAGGGAGGAACC+TGG + Chr3:71290349-71290368 None:intergenic 55.0%
ACTGCTCGGCTGGGTAAACA+AGG - Chr3:71292435-71292454 MsG0380015516.01.T01:CDS 55.0%
ATCCCACGGTGGATAGTGAG+TGG + Chr3:71293329-71293348 None:intergenic 55.0%
CTGCTCGGCTGGGTAAACAA+GGG - Chr3:71292436-71292455 MsG0380015516.01.T01:CDS 55.0%
CTTGAGCTCAGCAGTTGGCT+CGG - Chr3:71294215-71294234 MsG0380015516.01.T01:intron 55.0%
GAACTCGGAGTCCATGGTTG+CGG + Chr3:71290081-71290100 None:intergenic 55.0%
GCACGTGGACTTGACATACC+TGG - Chr3:71292183-71292202 MsG0380015516.01.T01:intron 55.0%
GCTCGAACTTCAACCCTCAC+AGG + Chr3:71291360-71291379 None:intergenic 55.0%
GCTGCAGAGTAAGGGGATAG+TGG + Chr3:71290219-71290238 None:intergenic 55.0%
GGAGGAACCTGGTGAGGTTT+GGG + Chr3:71290338-71290357 None:intergenic 55.0%
GGCAAATTAGCCACGGGACA+TGG - Chr3:71293267-71293286 MsG0380015516.01.T01:CDS 55.0%
GTGGAAGAGCTTGCCAAAGC+AGG - Chr3:71291324-71291343 MsG0380015516.01.T01:intron 55.0%
TGTACGGATGTTGCAGCACG+TGG - Chr3:71292168-71292187 MsG0380015516.01.T01:intron 55.0%
! GCAGAGTAAGGGGATAGTGG+CGG + Chr3:71290216-71290235 None:intergenic 55.0%
! TAGGGTTTTACCGGAACCGG+TGG + Chr3:71290267-71290286 None:intergenic 55.0%
! TGAAGAACGGGTTCGGAGAG+TGG + Chr3:71290149-71290168 None:intergenic 55.0%
! TGCCAAGTTGACAGGCACAG+AGG - Chr3:71295010-71295029 MsG0380015516.01.T01:intron 55.0%
! TTGAGCTCAGCAGTTGGCTC+GGG - Chr3:71294216-71294235 MsG0380015516.01.T01:intron 55.0%
!! GTGTCGGTGTCGGGCATTAT+TGG - Chr3:71290952-71290971 MsG0380015516.01.T01:intron 55.0%
ACGCCACTCACTATCCACCG+TGG - Chr3:71293323-71293342 MsG0380015516.01.T01:intron 60.0%
CGCCACTCACTATCCACCGT+GGG - Chr3:71293324-71293343 MsG0380015516.01.T01:intron 60.0%
GAAGTCGGTCCTCCGAACTC+TGG + Chr3:71295229-71295248 None:intergenic 60.0%
GGGAGGAACCTGGTGAGGTT+TGG + Chr3:71290339-71290358 None:intergenic 60.0%
GTTGGGGAACTCGGAGTCCA+TGG + Chr3:71290087-71290106 None:intergenic 60.0%
GTTGGTCGAACTGCTCGGCT+GGG - Chr3:71292426-71292445 MsG0380015516.01.T01:CDS 60.0%
! AGAACGGGTTCGGAGAGTGG+TGG + Chr3:71290146-71290165 None:intergenic 60.0%
! GATAGTGGCGGCTTGAACGG+GGG + Chr3:71290204-71290223 None:intergenic 60.0%
! GGATAGTGGCGGCTTGAACG+GGG + Chr3:71290205-71290224 None:intergenic 60.0%
! GGGATAGTGGCGGCTTGAAC+GGG + Chr3:71290206-71290225 None:intergenic 60.0%
! GGGGATAGTGGCGGCTTGAA+CGG + Chr3:71290207-71290226 None:intergenic 60.0%
! GGTTTTACCGGAACCGGTGG+CGG + Chr3:71290264-71290283 None:intergenic 60.0%
GGAGAGGGAGGAACCTGGTG+AGG + Chr3:71290344-71290363 None:intergenic 65.0%
! GGTTGGTCGAACTGCTCGGC+TGG - Chr3:71292425-71292444 MsG0380015516.01.T01:CDS 65.0%
! GGAACCGGTGGCGGCATCGA+CGG + Chr3:71290255-71290274 None:intergenic 70.0%
!! GTCGATGCCGCCACCGGTTC+CGG - Chr3:71290254-71290273 MsG0380015516.01.T01:three_prime_UTR 70.0%
GTCGCCGTCGATGCCGCCAC+CGG - Chr3:71290248-71290267 MsG0380015516.01.T01:three_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 71290070 71295638 71290070 ID=MsG0380015516.01;Name=MsG0380015516.01
Chr3 mRNA 71290070 71295638 71290070 ID=MsG0380015516.01.T01;Parent=MsG0380015516.01;Name=MsG0380015516.01.T01;_AED=0.42;_eAED=0.42;_QI=16|0.87|0.88|1|1|1|9|595|524
Chr3 exon 71290070 71290932 71290070 ID=MsG0380015516.01.T01:exon:615;Parent=MsG0380015516.01.T01
Chr3 exon 71292317 71292460 71292317 ID=MsG0380015516.01.T01:exon:614;Parent=MsG0380015516.01.T01
Chr3 exon 71292540 71292646 71292540 ID=MsG0380015516.01.T01:exon:613;Parent=MsG0380015516.01.T01
Chr3 exon 71293034 71293123 71293034 ID=MsG0380015516.01.T01:exon:612;Parent=MsG0380015516.01.T01
Chr3 exon 71293223 71293321 71293223 ID=MsG0380015516.01.T01:exon:611;Parent=MsG0380015516.01.T01
Chr3 exon 71293484 71293589 71293484 ID=MsG0380015516.01.T01:exon:610;Parent=MsG0380015516.01.T01
Chr3 exon 71294251 71294510 71294251 ID=MsG0380015516.01.T01:exon:609;Parent=MsG0380015516.01.T01
Chr3 exon 71295033 71295269 71295033 ID=MsG0380015516.01.T01:exon:608;Parent=MsG0380015516.01.T01
Chr3 exon 71295359 71295638 71295359 ID=MsG0380015516.01.T01:exon:607;Parent=MsG0380015516.01.T01
Chr3 five_prime_UTR 71295623 71295638 71295623 ID=MsG0380015516.01.T01:five_prime_utr;Parent=MsG0380015516.01.T01
Chr3 CDS 71295359 71295622 71295359 ID=MsG0380015516.01.T01:cds;Parent=MsG0380015516.01.T01
Chr3 CDS 71295033 71295269 71295033 ID=MsG0380015516.01.T01:cds;Parent=MsG0380015516.01.T01
Chr3 CDS 71294251 71294510 71294251 ID=MsG0380015516.01.T01:cds;Parent=MsG0380015516.01.T01
Chr3 CDS 71293484 71293589 71293484 ID=MsG0380015516.01.T01:cds;Parent=MsG0380015516.01.T01
Chr3 CDS 71293223 71293321 71293223 ID=MsG0380015516.01.T01:cds;Parent=MsG0380015516.01.T01
Chr3 CDS 71293034 71293123 71293034 ID=MsG0380015516.01.T01:cds;Parent=MsG0380015516.01.T01
Chr3 CDS 71292540 71292646 71292540 ID=MsG0380015516.01.T01:cds;Parent=MsG0380015516.01.T01
Chr3 CDS 71292317 71292460 71292317 ID=MsG0380015516.01.T01:cds;Parent=MsG0380015516.01.T01
Chr3 CDS 71290665 71290932 71290665 ID=MsG0380015516.01.T01:cds;Parent=MsG0380015516.01.T01
Chr3 three_prime_UTR 71290070 71290664 71290070 ID=MsG0380015516.01.T01:three_prime_utr;Parent=MsG0380015516.01.T01
Gene Sequence

>MsG0380015516.01.T01

ATGGACTCCGAGTTCCCCAACAAAGCATTAACCTCAACTCGTTTCTCCGACCTAAAACCACCACTCTCCGAACCCGTTCTTCAAGCTCTCACAGACTCAAACTTTGATTTCTGCACCCCCGTTCAAGCCGCCACTATCCCCTTACTCTGCAGCTACAAAGACGTCGCCGTCGATGCCGCCACCGGTTCCGGTAAAACCCTAGCTTTCGTCATTCCACTTGTCGAAATTCTTCGCCGGAACGCTTCCAATCCCAAACCTCACCAGGTGCTTGGAGTGATTATATCTCCTACAAGGGAATTAGCGTCGCAAATATATCATGTTGCACAGCCTTTTATTTCGACTTTAGCGAATGTTAAATCAATGCTACTTGTTGGTGGAGTGGAAGTGAAAGCAGATATGAAGAAAATTGAGGAAGAAGGAGCAAATGTATTGATTGGCACGCCGGGGCGATTACATGATATTATGAATCGGATGGATATTTTGGATTTCAAAAGCTTTGAGATTTTGATTTTGGATGAGGCTGATAGACTATTAGATATGGGATTCCAGAAGCAGATAAATGCTATCATAACTGAGTTGCCTAAGCTTCGAAGAACTGGCTTATTCTCTGCTACTCAAACTCAGGCTGTGGAAGAGCTTGCCAAAGCAGGATTGAGGAATCCTGTGAGGGTTGAAGTTCGAGCTGAAACAAAACAGCAAATGATTCTGCTGCATCAAAGAAAACAGAGTCTTCAAAGACACCTTCAGGTCTTCACATTGAGGGAGAAGGCACTAACTTCATTTACATCCCTTTCAAATGGAATTCTTTTGTGTACGGATGTTGCAGCACGTGGACTTGACATACCTGGTGTAGACTGTATAGTGCAGTATGATCCTCCTCAAGACCCAAATGTGTTCGTACATAGGGTTGGTCGAACTGCTCGGCTGGGTAAACAAGGGCATGCTGTTGTCTTCTTATTACCAAAGGAGGAATCATATGTAGAATTCTTGCGTATACGAAGAGTTCCTCTTCAAGAGAGAATGTGCTCCGACAATGCACCTGATGTTATACCCGAGATTCGTTCCGCGGCAACAAAAGATCGTGATGTCATGGAGAAGGGAGTCAGGGCATTTGTTTCTTACATTCGCGCTTATAAAGAGCATCACTGCTCTTATATTTTCAGGTGGAAAGAACTTGAAATTGGCAAATTAGCCACGGGACATGGCTTATTGCAACTTCCTTTAGTGCCGGAGATAAAACGCCACTCACTATCCACCGTGGGATTTGAACCAGTTAAAGATATCAATTTCGAGGAGATTAGATTCAGGGATAAATCAAGAGAGAAACAAAGGAAGAAAAACCTGCAAGTAAAGAAAGAAGCCAAAGAGAAAGAGCCAAAACCTAAAAAACCAAAGAGAACTCCTGAAGTACCTACTGCCATGAGAAAGCAAACAGCTAAACAAAGACGTGCTAAGCAGACAGTTGAAGATGAGGAAGAGTTGACGCAAGAATACCGGTTGTTGAAGAAATTGAAGAAAGGGACCATAGATGAGGATGAATATGCCAAGTTGACAGGCACAGAGGATTTACTTTGA
Protein sequence

>MsG0380015516.01.T01

MDSEFPNKALTSTRFSDLKPPLSEPVLQALTDSNFDFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVIPLVEILRRNASNPKPHQVLGVIISPTRELASQIYHVAQPFISTLANVKSMLLVGGVEVKADMKKIEEEGANVLIGTPGRLHDIMNRMDILDFKSFEILILDEADRLLDMGFQKQINAIITELPKLRRTGLFSATQTQAVEELAKAGLRNPVRVEVRAETKQQMILLHQRKQSLQRHLQVFTLREKALTSFTSLSNGILLCTDVAARGLDIPGVDCIVQYDPPQDPNVFVHRVGRTARLGKQGHAVVFLLPKEESYVEFLRIRRVPLQERMCSDNAPDVIPEIRSAATKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLATGHGLLQLPLVPEIKRHSLSTVGFEPVKDINFEEIRFRDKSREKQRKKNLQVKKEAKEKEPKPKKPKRTPEVPTAMRKQTAKQRRAKQTVEDEEELTQEYRLLKKLKKGTIDEDEYAKLTGTEDLL*