AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180001306.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001306.01.T01 MTR_1g034785 78.587 467 33 3 1 429 1 438 0.0 725
MsG0180001306.01.T01 MTR_7g016970 59.873 471 115 9 1 428 1 440 0.0 516
MsG0180001306.01.T01 MTR_4g103760 33.227 313 158 7 3 270 10 316 7.62e-48 171
MsG0180001306.01.T01 MTR_8g054430 27.273 308 179 9 2 266 3 308 8.31e-24 103
MsG0180001306.01.T01 MTR_1g072140 25.269 186 111 4 85 267 120 280 6.57e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180001306.01.T01 AT3G49180 47.458 472 167 12 1 427 1 436 3.46e-135 395
MsG0180001306.01.T01 AT4G02730 25.887 282 163 12 4 273 57 304 2.21e-12 68.2

Find 118 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGGAATTTGTTAATTTC+TGG 0.180820 1:+19148604 MsG0180001306.01.T01:CDS
ATCACCACTGCTGATAATTA+TGG 0.213558 1:+19148406 MsG0180001306.01.T01:CDS
TATGAGAACTTGCACGAATT+TGG 0.227639 1:+19150322 MsG0180001306.01.T01:CDS
TTTGTTTAACTTATCAATTA+AGG 0.282412 1:-19150576 None:intergenic
GTGAAGTATGGAGGTTGTTT+TGG 0.285280 1:+19145192 MsG0180001306.01.T01:exon
AATCTTAAAAGTACAAATTA+AGG 0.302106 1:-19150546 None:intergenic
TTCTTACATGTTAATCTCTC+TGG 0.312291 1:+19149676 MsG0180001306.01.T01:CDS
TAATCACATTAAGGAGCTTC+AGG 0.315950 1:+19149925 MsG0180001306.01.T01:CDS
AAACCGTCGGCAGTGAAGTA+TGG 0.325819 1:+19145180 MsG0180001306.01.T01:exon
GGCGAGTCCAGCTTGCGTTC+GGG 0.328741 1:-19145100 None:intergenic
CTTGCACGAATTTGGTATAA+AGG 0.332053 1:+19150330 MsG0180001306.01.T01:CDS
CGGCGAGTCCAGCTTGCGTT+CGG 0.336466 1:-19145101 None:intergenic
GTGGGAATTTGTTAATTTCT+GGG 0.342559 1:+19148605 MsG0180001306.01.T01:CDS
TGTGATATCTAATCACATTA+AGG 0.353822 1:+19149916 MsG0180001306.01.T01:CDS
CGGCGGCCGCCGGCAAACTC+CGG 0.356795 1:-19145155 None:intergenic
ACAACAAGAATATTAGTTAT+AGG 0.359437 1:-19149710 None:intergenic
TATTATAGTTTATTCTTAGA+TGG 0.360553 1:+19149615 MsG0180001306.01.T01:intron
GATGACTCACTGCTGATATC+TGG 0.365366 1:+19147206 MsG0180001306.01.T01:CDS
TTGTTTAACTTATCAATTAA+GGG 0.371077 1:-19150575 None:intergenic
ATTTGGTATAAAGGAGCTAT+TGG 0.374097 1:+19150339 MsG0180001306.01.T01:CDS
TAGCCATCTCCATTGTCCTT+TGG 0.382041 1:-19150282 None:intergenic
AGGAAGCATAACAAACTAGA+AGG 0.383653 1:-19150475 None:intergenic
TTAATCTCTCTGGATGTTGC+AGG 0.383808 1:+19149686 MsG0180001306.01.T01:CDS
ACAATGGCATTAATTATTGA+TGG 0.388339 1:-19148304 None:intergenic
AGGATGGAATAGTTCGTGTT+TGG 0.400519 1:+19148632 MsG0180001306.01.T01:CDS
ATTATTTGTAAGGTTGAAAC+TGG 0.404070 1:+19147122 MsG0180001306.01.T01:intron
TTCCATGGCCTTGCCTCTCT+CGG 0.404143 1:+19145301 MsG0180001306.01.T01:CDS
AAGATGGATATGTAAGAGTT+TGG 0.419112 1:+19147234 MsG0180001306.01.T01:CDS
GAAAACGTCCCGGAGTTTGC+CGG 0.426807 1:+19145146 MsG0180001306.01.T01:five_prime_UTR
AATAATTAATGCCATTGTCT+TGG 0.429313 1:+19148309 MsG0180001306.01.T01:CDS
GCCTCTTCCTCTGTTGACGA+TGG 0.429881 1:+19145214 MsG0180001306.01.T01:CDS
TAAGAAATGCATGCTTTAGA+AGG 0.434476 1:-19149659 None:intergenic
GTCCGGTTATATATACTTGT+GGG 0.435807 1:+19146109 MsG0180001306.01.T01:CDS
CTGATATCTGGTTCTGAAGA+TGG 0.441099 1:+19147218 MsG0180001306.01.T01:CDS
TCACCACTGCTGATAATTAT+GGG 0.441219 1:+19148407 MsG0180001306.01.T01:CDS
CGCATGTTTAAACATGCTAA+AGG 0.445611 1:+19148679 MsG0180001306.01.T01:CDS
CTCCCACAAGTATATATAAC+CGG 0.445936 1:-19146111 None:intergenic
TTAGAAGATGTACGATTGCT+TGG 0.449877 1:-19149749 None:intergenic
TCGGAGCCCCGAACGCAAGC+TGG 0.453891 1:+19145093 MsG0180001306.01.T01:five_prime_UTR
GTCTTATTTACTCCCTCCAT+TGG 0.455842 1:+19149799 MsG0180001306.01.T01:CDS
CTGGCAGATTGCTTAAGAAA+TGG 0.457303 1:+19147141 MsG0180001306.01.T01:CDS
AGAAATGGCATGCTCATTTG+AGG 0.457810 1:+19147156 MsG0180001306.01.T01:CDS
TTTGAGGGCCGTCACTTGCC+TGG 0.460055 1:+19147172 MsG0180001306.01.T01:CDS
GGCGGCCGCCGGCAAACTCC+GGG 0.461996 1:-19145154 None:intergenic
GGTTGTTGGGACCTTCATAC+AGG 0.466610 1:+19145241 MsG0180001306.01.T01:CDS
CTAGTTGGCGGAGCTTTGTC+CGG 0.467365 1:+19146092 MsG0180001306.01.T01:CDS
TTGACGATGGGATAGGTTGT+TGG 0.469907 1:+19145227 MsG0180001306.01.T01:CDS
CTCCATCTCGATTTCAGAAG+CGG 0.478651 1:-19150242 None:intergenic
CTATCAACCTAGGTGATAGC+AGG 0.478817 1:+19149861 MsG0180001306.01.T01:CDS
TTAATTTCTGGGTCTGAGGA+TGG 0.480417 1:+19148616 MsG0180001306.01.T01:CDS
TAGAAGATGTACGATTGCTT+GGG 0.483277 1:-19149748 None:intergenic
AAAGATAACACAAACTAGTA+AGG 0.486154 1:-19150517 None:intergenic
AACCGAGAGAGGCAAGGCCA+TGG 0.488662 1:-19145303 None:intergenic
TGTCCGGTTATATATACTTG+TGG 0.490471 1:+19146108 MsG0180001306.01.T01:CDS
AAGAAAACAGAAGCAGAAGA+AGG 0.494409 1:-19145358 None:intergenic
CCCAAAATTGAAAACGTGCT+TGG 0.497056 1:-19150418 None:intergenic
TCCTCTGTTGACGATGGGAT+AGG 0.500735 1:+19145220 MsG0180001306.01.T01:CDS
CATCTCCTCGGAAAACGTCC+CGG 0.502187 1:+19145136 MsG0180001306.01.T01:five_prime_UTR
TCATGTTCTTCACCTTTCCA+TGG 0.503394 1:+19145286 MsG0180001306.01.T01:CDS
TTTCTTATGGTCCTTCTCCA+AGG 0.506131 1:+19145375 MsG0180001306.01.T01:CDS
GAAATGGCATGCTCATTTGA+GGG 0.512057 1:+19147157 MsG0180001306.01.T01:CDS
CAATGGCATTAATTATTGAT+GGG 0.515934 1:-19148303 None:intergenic
TGACGATGGGATAGGTTGTT+GGG 0.516644 1:+19145228 MsG0180001306.01.T01:CDS
CCTCTTCCTCTGTTGACGAT+GGG 0.518306 1:+19145215 MsG0180001306.01.T01:CDS
AGGTGATAGCAGGGGATGCA+TGG 0.521018 1:+19149871 MsG0180001306.01.T01:CDS
CCCATCGTCAACAGAGGAAG+AGG 0.523292 1:-19145215 None:intergenic
TTATTTGTCATCTTCATCGA+AGG 0.524621 1:-19150380 None:intergenic
CCCCTTGCTGCTAATCATCA+AGG 0.525393 1:+19146062 MsG0180001306.01.T01:CDS
CATCAAGGAACATATCTAGT+TGG 0.526932 1:+19146077 MsG0180001306.01.T01:CDS
GCTTGCGTTCGGGGCTCCGA+GGG 0.528347 1:-19145090 None:intergenic
TTTGTTAATTTCTGGGTCTG+AGG 0.529152 1:+19148612 MsG0180001306.01.T01:CDS
GCATAAAACACATGTTCAGC+TGG 0.534177 1:-19148334 None:intergenic
TGCTTAGCATATAGCAAAGG+TGG 0.536767 1:+19148586 MsG0180001306.01.T01:CDS
TCCTTGATGATTAGCAGCAA+GGG 0.537506 1:-19146063 None:intergenic
TTCCTTGATGATTAGCAGCA+AGG 0.539334 1:-19146064 None:intergenic
GCTGCTCAGCACCTGTATGA+AGG 0.553379 1:-19145252 None:intergenic
TAGATAAAATACCTTGGAGA+AGG 0.564747 1:-19145386 None:intergenic
AACTAAAACACGAGTACCAA+AGG 0.565002 1:+19150266 MsG0180001306.01.T01:CDS
AAGAAAGCGAGAACCGAGAG+AGG 0.566884 1:-19145314 None:intergenic
AGCTTGCGTTCGGGGCTCCG+AGG 0.568675 1:-19145091 None:intergenic
CAAGGAACATATCTAGTTGG+CGG 0.571699 1:+19146080 MsG0180001306.01.T01:CDS
AGAAAATACCAGGCAAGTGA+CGG 0.572365 1:-19147180 None:intergenic
AGAAAACAGAAGCAGAAGAA+GGG 0.573355 1:-19145357 None:intergenic
GGTATAAAGGAGCTATTGGA+TGG 0.575688 1:+19150343 MsG0180001306.01.T01:CDS
AGCGAGAACCGAGAGAGGCA+AGG 0.575712 1:-19145309 None:intergenic
AATTATGGGATGCATATCAC+TGG 0.576852 1:+19148421 MsG0180001306.01.T01:CDS
GGAAGCATAACAAACTAGAA+GGG 0.579673 1:-19150474 None:intergenic
GCGAGTCCAGCTTGCGTTCG+GGG 0.580869 1:-19145099 None:intergenic
AGGGGCTTAATAGCTTCAGC+AGG 0.582260 1:-19146044 None:intergenic
GGCGGCCGCCGTAAAACCGT+CGG 0.583105 1:+19145167 MsG0180001306.01.T01:five_prime_UTR
CCTTGATGATTAGCAGCAAG+GGG 0.595743 1:-19146062 None:intergenic
CATTGAACAACTCATCTCCT+CGG 0.598297 1:+19145124 MsG0180001306.01.T01:five_prime_UTR
CAATGGAGATGGCTAACCAA+TGG 0.599592 1:+19150290 MsG0180001306.01.T01:CDS
AGTCATCATCAGAAAATACC+AGG 0.602655 1:-19147190 None:intergenic
TCATCTATTTCTCAGCAACA+AGG 0.603240 1:+19150211 MsG0180001306.01.T01:intron
TTAAAGACTGCTATCAACCT+AGG 0.603770 1:+19149851 MsG0180001306.01.T01:CDS
CCTCCATACTTCACTGCCGA+CGG 0.607079 1:-19145183 None:intergenic
CGCCGCTTCTGAAATCGAGA+TGG 0.614970 1:+19150240 MsG0180001306.01.T01:CDS
GCTTAGCATATAGCAAAGGT+GGG 0.621169 1:+19148587 MsG0180001306.01.T01:CDS
AGAGAGGCAAGGCCATGGAA+AGG 0.629256 1:-19145298 None:intergenic
GTACCAAAGGACAATGGAGA+TGG 0.632040 1:+19150279 MsG0180001306.01.T01:CDS
TGCATCCCCTGCTATCACCT+AGG 0.634465 1:-19149868 None:intergenic
TAGGTATGGAGCTTAGCGAA+AGG 0.634540 1:+19148256 MsG0180001306.01.T01:intron
ACTTGCTTAGCATATAGCAA+AGG 0.635996 1:+19148583 MsG0180001306.01.T01:CDS
CATCCCATAATTATCAGCAG+TGG 0.638180 1:-19148410 None:intergenic
ACACGAGTACCAAAGGACAA+TGG 0.641742 1:+19150273 MsG0180001306.01.T01:CDS
GCATGCTTTAGAAGGTGACT+CGG 0.644983 1:-19149651 None:intergenic
AACGTCCCGGAGTTTGCCGG+CGG 0.645292 1:+19145149 MsG0180001306.01.T01:five_prime_UTR
TATCAACCTAGGTGATAGCA+GGG 0.648083 1:+19149862 MsG0180001306.01.T01:CDS
CGGTTATATATACTTGTGGG+AGG 0.657275 1:+19146112 MsG0180001306.01.T01:CDS
TTCAGCTGGATCCAAGACAA+TGG 0.658383 1:-19148320 None:intergenic
ACCTATCCCATCGTCAACAG+AGG 0.658456 1:-19145221 None:intergenic
AAGCTCTTAACTTCAACTTG+CGG 0.660819 1:-19146020 None:intergenic
CCGTCGGCAGTGAAGTATGG+AGG 0.662722 1:+19145183 MsG0180001306.01.T01:exon
ATAAAGGAGCTATTGGATGG+TGG 0.682514 1:+19150346 MsG0180001306.01.T01:CDS
CATCTCGATTTCAGAAGCGG+CGG 0.696583 1:-19150239 None:intergenic
ATCAACCTAGGTGATAGCAG+GGG 0.734418 1:+19149863 MsG0180001306.01.T01:CDS
AGGAGATGAGTTGTTCAATG+CGG 0.760225 1:-19145121 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACTAAAAAAAAGAAAAATA+AGG + Chr1:19146965-19146984 MsG0180001306.01.T01:intron 10.0%
!! TTTCTAAATAACAATAATAA+TGG - Chr1:19145937-19145956 None:intergenic 10.0%
!! ACATGAAAATTGTAAAAAAA+TGG - Chr1:19150106-19150125 None:intergenic 15.0%
!! ATTGTCTAATCAAAATTAAA+TGG - Chr1:19149303-19149322 None:intergenic 15.0%
!! TATTATAGTTTATTCTTAGA+TGG + Chr1:19149615-19149634 MsG0180001306.01.T01:intron 15.0%
!! TTAATTTCTATGCTTATATA+TGG + Chr1:19149589-19149608 MsG0180001306.01.T01:intron 15.0%
!! TTTAGAAAAATAGTAATCAA+TGG + Chr1:19147787-19147806 MsG0180001306.01.T01:intron 15.0%
!!! AAATTTTCAAATAGTATAGA+TGG - Chr1:19147848-19147867 None:intergenic 15.0%
!!! AACTTTTTTCCTTTTATTTT+GGG + Chr1:19147516-19147535 MsG0180001306.01.T01:intron 15.0%
!!! AATCTTAAAAGTACAAATTA+AGG - Chr1:19150549-19150568 None:intergenic 15.0%
!!! TAACTTTTTTCCTTTTATTT+TGG + Chr1:19147515-19147534 MsG0180001306.01.T01:intron 15.0%
!!! TGATTTATTTTCTTTTTTCT+AGG + Chr1:19148237-19148256 MsG0180001306.01.T01:intron 15.0%
!!! TTGAAAATTTTAGTCATTTA+TGG + Chr1:19147858-19147877 MsG0180001306.01.T01:intron 15.0%
!!! TTGTTTAACTTATCAATTAA+GGG - Chr1:19150578-19150597 None:intergenic 15.0%
!!! TTTCTTTTTTTTAGTTATTG+AGG - Chr1:19146961-19146980 None:intergenic 15.0%
!!! TTTGTTTAACTTATCAATTA+AGG - Chr1:19150579-19150598 None:intergenic 15.0%
!! AAAAACTATGTATTGAAAGT+GGG + Chr1:19147056-19147075 MsG0180001306.01.T01:intron 20.0%
!! ACAACAAGAATATTAGTTAT+AGG - Chr1:19149713-19149732 None:intergenic 20.0%
!! AGTGATAACTAACAATTAAT+GGG + Chr1:19148903-19148922 MsG0180001306.01.T01:intron 20.0%
!! ATAATTAAATGTAATGACAC+CGG + Chr1:19145671-19145690 MsG0180001306.01.T01:intron 20.0%
!! ATGAACAAATTATTATTGTC+TGG - Chr1:19148104-19148123 None:intergenic 20.0%
!! ATTAAGTAGTTTATCTAAAC+AGG - Chr1:19146272-19146291 None:intergenic 20.0%
!! ATTACTAACAAGATTCATTT+AGG + Chr1:19145826-19145845 MsG0180001306.01.T01:intron 20.0%
!! GTATATTATCCCAAAATAAA+AGG - Chr1:19147528-19147547 None:intergenic 20.0%
!! GTCACAATTAAATTAGTTAA+TGG - Chr1:19150178-19150197 None:intergenic 20.0%
!! TAAAAAAGACTGATAACTAT+AGG - Chr1:19149968-19149987 None:intergenic 20.0%
!! TTAAGTAGTTTATCTAAACA+GGG - Chr1:19146271-19146290 None:intergenic 20.0%
!! TTACTAACAAGATTCATTTA+GGG + Chr1:19145827-19145846 MsG0180001306.01.T01:intron 20.0%
!!! AATCATTTAGAGTATATTGA+AGG - Chr1:19149548-19149567 None:intergenic 20.0%
!!! ATGTTGATTATTATAAGTCA+GGG - Chr1:19149109-19149128 None:intergenic 20.0%
!!! TAATTTTTTTTCTTCCCATT+TGG + Chr1:19148519-19148538 MsG0180001306.01.T01:intron 20.0%
!!! TATGATTGGATGTAAAATTT+TGG - Chr1:19147007-19147026 None:intergenic 20.0%
!!! TATTTTCTTTTTTCTAGGTA+TGG + Chr1:19148242-19148261 MsG0180001306.01.T01:intron 20.0%
!!! TTTAGATCAAGAGTTTTAAA+CGG + Chr1:19146224-19146243 MsG0180001306.01.T01:intron 20.0%
! AAAAATTAGAGGACATCAAA+AGG - Chr1:19148507-19148526 None:intergenic 25.0%
! AAAATGTTCAATCTGAATGT+TGG - Chr1:19150025-19150044 None:intergenic 25.0%
! AAAGATAACACAAACTAGTA+AGG - Chr1:19150520-19150539 None:intergenic 25.0%
! AAGCATCCACAAAAAAAAAT+GGG + Chr1:19149777-19149796 MsG0180001306.01.T01:CDS 25.0%
! AATAATTAATGCCATTGTCT+TGG + Chr1:19148309-19148328 MsG0180001306.01.T01:CDS 25.0%
! AATAGCTATGTTGTTAGTAA+CGG + Chr1:19146412-19146431 MsG0180001306.01.T01:intron 25.0%
! AATTGATTAGATGATAAGTG+AGG + Chr1:19145955-19145974 MsG0180001306.01.T01:intron 25.0%
! ACAATGGCATTAATTATTGA+TGG - Chr1:19148307-19148326 None:intergenic 25.0%
! ATGGGAAGAAAAAAAATTAG+AGG - Chr1:19148518-19148537 None:intergenic 25.0%
! ATTATTTGTAAGGTTGAAAC+TGG + Chr1:19147122-19147141 MsG0180001306.01.T01:intron 25.0%
! CAATGGCATTAATTATTGAT+GGG - Chr1:19148306-19148325 None:intergenic 25.0%
! GAAAAACTATGTATTGAAAG+TGG + Chr1:19147055-19147074 MsG0180001306.01.T01:intron 25.0%
! GAGTGATAACTAACAATTAA+TGG + Chr1:19148902-19148921 MsG0180001306.01.T01:intron 25.0%
! GATCCAACAAAAATAATAAG+AGG - Chr1:19150498-19150517 None:intergenic 25.0%
! GGAATGTTTATTCAACTTAA+TGG + Chr1:19146174-19146193 MsG0180001306.01.T01:intron 25.0%
! TAACAATTGAACTTAACAGT+GGG - Chr1:19149166-19149185 None:intergenic 25.0%
! TAATGACTGAACTTAACAAA+GGG + Chr1:19149403-19149422 MsG0180001306.01.T01:intron 25.0%
! TAATTAAATGTAATGACACC+GGG + Chr1:19145672-19145691 MsG0180001306.01.T01:intron 25.0%
! TCAACAGTAAAGATAGTTTA+GGG - Chr1:19146595-19146614 None:intergenic 25.0%
! TGTGATATCTAATCACATTA+AGG + Chr1:19149916-19149935 MsG0180001306.01.T01:CDS 25.0%
! TTCAAATAGTATCAACTTGT+CGG - Chr1:19145642-19145661 None:intergenic 25.0%
!! ATTGGATGTAAAATTTTGGA+GGG - Chr1:19147003-19147022 None:intergenic 25.0%
!! CATGTTGATTATTATAAGTC+AGG - Chr1:19149110-19149129 None:intergenic 25.0%
!! GAATTTGCATATTTTTCCAA+TGG - Chr1:19149818-19149837 None:intergenic 25.0%
!! TCTTTACGAGTATAGTTTTT+CGG + Chr1:19147644-19147663 MsG0180001306.01.T01:intron 25.0%
!! TTATTTGATGATTTGAGAAG+CGG + Chr1:19147610-19147629 MsG0180001306.01.T01:intron 25.0%
!!! ATAAGACCCATTTTTTTTTG+TGG - Chr1:19149786-19149805 None:intergenic 25.0%
!!! CTTCCTCTTATTATTTTTGT+TGG + Chr1:19150492-19150511 MsG0180001306.01.T01:three_prime_UTR 25.0%
!!! TTAGATCAAGAGTTTTAAAC+GGG + Chr1:19146225-19146244 MsG0180001306.01.T01:intron 25.0%
AAAAACCCTATTCCTTCATT+TGG + Chr1:19146650-19146669 MsG0180001306.01.T01:intron 30.0%
AAATAGTCGCACTATAACAT+TGG - Chr1:19148052-19148071 None:intergenic 30.0%
AACAAAGGGAGCTTATTAAA+TGG + Chr1:19149417-19149436 MsG0180001306.01.T01:intron 30.0%
AAGATGGATATGTAAGAGTT+TGG + Chr1:19147234-19147253 MsG0180001306.01.T01:CDS 30.0%
AAGGAAAAAGTTCATGACAT+AGG - Chr1:19148832-19148851 None:intergenic 30.0%
AAGGAGTAGATAAAATACCT+TGG - Chr1:19145395-19145414 None:intergenic 30.0%
AATAAAAACAGCAAAACCCT+CGG + Chr1:19145074-19145093 MsG0180001306.01.T01:five_prime_UTR 30.0%
ACACACCAAAATATAGACTT+AGG - Chr1:19146813-19146832 None:intergenic 30.0%
ACTGACATACATATGAATAC+CGG - Chr1:19150142-19150161 None:intergenic 30.0%
AGTAGTTAACATTGAAGAAG+AGG + Chr1:19146673-19146692 MsG0180001306.01.T01:intron 30.0%
AGTTGCATGCATTATTTGTA+AGG + Chr1:19147112-19147131 MsG0180001306.01.T01:intron 30.0%
ATATAGACTTAGGTCATGTT+TGG - Chr1:19146803-19146822 None:intergenic 30.0%
ATGTATTGAAAGTGGGAAAT+TGG + Chr1:19147063-19147082 MsG0180001306.01.T01:intron 30.0%
ATGTTAACTACTCCAAATGA+AGG - Chr1:19146665-19146684 None:intergenic 30.0%
ATTCTTATTGAACGTATCTC+AGG - Chr1:19145722-19145741 None:intergenic 30.0%
ATTTGGTATAAAGGAGCTAT+TGG + Chr1:19150339-19150358 MsG0180001306.01.T01:CDS 30.0%
CAAGCATCCACAAAAAAAAA+TGG + Chr1:19149776-19149795 MsG0180001306.01.T01:CDS 30.0%
CATACAAGCTTTACTAAACA+TGG - Chr1:19148783-19148802 None:intergenic 30.0%
CTAACAATTGAACTTAACAG+TGG - Chr1:19149167-19149186 None:intergenic 30.0%
CTAATACCGCAAAAAGTTTA+GGG - Chr1:19147030-19147049 None:intergenic 30.0%
CTAATGACTGAACTTAACAA+AGG + Chr1:19149402-19149421 MsG0180001306.01.T01:intron 30.0%
CTCAACAGTAAAGATAGTTT+AGG - Chr1:19146596-19146615 None:intergenic 30.0%
GAATCTTGTTAGTAATTCCA+TGG - Chr1:19145822-19145841 None:intergenic 30.0%
GATAACTAACAATTAATGGG+TGG + Chr1:19148906-19148925 MsG0180001306.01.T01:intron 30.0%
GGCATAAACTTCATGAAATA+TGG + Chr1:19148705-19148724 MsG0180001306.01.T01:intron 30.0%
GTAGTTAACATTGAAGAAGA+GGG + Chr1:19146674-19146693 MsG0180001306.01.T01:intron 30.0%
TAGATAAAATACCTTGGAGA+AGG - Chr1:19145389-19145408 None:intergenic 30.0%
TATTGACATGTTACGATTTC+AGG - Chr1:19149135-19149154 None:intergenic 30.0%
TCAGAGATTCTAATTTGACA+AGG - Chr1:19148878-19148897 None:intergenic 30.0%
TCCATTATGTAATTTCCCTA+TGG + Chr1:19149017-19149036 MsG0180001306.01.T01:intron 30.0%
TCTAAACAAACTTACACTTC+AGG - Chr1:19146210-19146229 None:intergenic 30.0%
TGATTAGACAATTTCATCTC+TGG + Chr1:19149311-19149330 MsG0180001306.01.T01:intron 30.0%
TGTATTGAAAGTGGGAAATT+GGG + Chr1:19147064-19147083 MsG0180001306.01.T01:intron 30.0%
TGTTAAGTTCAGTCATTAGA+GGG - Chr1:19149401-19149420 None:intergenic 30.0%
TTAGTATGAAGATGCCAAAT+GGG - Chr1:19148536-19148555 None:intergenic 30.0%
TTATTTGTCATCTTCATCGA+AGG - Chr1:19150383-19150402 None:intergenic 30.0%
TTCTTACATGTTAATCTCTC+TGG + Chr1:19149676-19149695 MsG0180001306.01.T01:CDS 30.0%
TTGTTAAGTTCAGTCATTAG+AGG - Chr1:19149402-19149421 None:intergenic 30.0%
! AAGCATTTGTAAGACTGTTT+TGG - Chr1:19146749-19146768 None:intergenic 30.0%
! ACTATCAATGCTAACCATTT+TGG + Chr1:19147557-19147576 MsG0180001306.01.T01:intron 30.0%
! AGGTCAATATGTTTAAGATC+TGG - Chr1:19148487-19148506 None:intergenic 30.0%
! ATCATACCCTAAACTTTTTG+CGG + Chr1:19147021-19147040 MsG0180001306.01.T01:intron 30.0%
! CAAAAAGTTTAGGGTATGAT+TGG - Chr1:19147021-19147040 None:intergenic 30.0%
! CATGACCTAAGTCTATATTT+TGG + Chr1:19146805-19146824 MsG0180001306.01.T01:intron 30.0%
! CTATCAATGCTAACCATTTT+GGG + Chr1:19147558-19147577 MsG0180001306.01.T01:intron 30.0%
! GATTGGATGTAAAATTTTGG+AGG - Chr1:19147004-19147023 None:intergenic 30.0%
! TAAGAAATGCATGCTTTAGA+AGG - Chr1:19149662-19149681 None:intergenic 30.0%
! TATTTGATGATTTGAGAAGC+GGG + Chr1:19147611-19147630 MsG0180001306.01.T01:intron 30.0%
! TCTCATACATTTTCTTCCAT+TGG - Chr1:19150309-19150328 None:intergenic 30.0%
! TTGCATATTTTTCCAATGGA+GGG - Chr1:19149814-19149833 None:intergenic 30.0%
! TTTGCATATTTTTCCAATGG+AGG - Chr1:19149815-19149834 None:intergenic 30.0%
!! ACTTTCTCATTTTAACAGCA+AGG + Chr1:19148555-19148574 MsG0180001306.01.T01:intron 30.0%
!! ATGAAAGTGTTTCCAAATAG+CGG + Chr1:19147392-19147411 MsG0180001306.01.T01:intron 30.0%
!! CTTGATGCTTGGATTTTAAT+GGG + Chr1:19146153-19146172 MsG0180001306.01.T01:intron 30.0%
!! GTGGGAATTTGTTAATTTCT+GGG + Chr1:19148605-19148624 MsG0180001306.01.T01:CDS 30.0%
AAATCATACAAACAACAGCC+AGG - Chr1:19148189-19148208 None:intergenic 35.0%
AAATCATGAATCCTAGCCAT+AGG - Chr1:19149036-19149055 None:intergenic 35.0%
AACTAAAACACGAGTACCAA+AGG + Chr1:19150266-19150285 MsG0180001306.01.T01:CDS 35.0%
AAGAAAACAGAAGCAGAAGA+AGG - Chr1:19145361-19145380 None:intergenic 35.0%
AAGCTCTTAACTTCAACTTG+CGG - Chr1:19146023-19146042 None:intergenic 35.0%
AATCATGAATCCTAGCCATA+GGG - Chr1:19149035-19149054 None:intergenic 35.0%
AATTATGGGATGCATATCAC+TGG + Chr1:19148421-19148440 MsG0180001306.01.T01:CDS 35.0%
ACAACTTGAGCATTAGGAAA+AGG - Chr1:19148851-19148870 None:intergenic 35.0%
ACTACTCCAAATGAAGGAAT+AGG - Chr1:19146659-19146678 None:intergenic 35.0%
ACTGATGTTGTGATTGGTAA+TGG + Chr1:19147684-19147703 MsG0180001306.01.T01:intron 35.0%
ACTTGCTTAGCATATAGCAA+AGG + Chr1:19148583-19148602 MsG0180001306.01.T01:CDS 35.0%
AGAAAACAGAAGCAGAAGAA+GGG - Chr1:19145360-19145379 None:intergenic 35.0%
AGACTGATAACTATAGGTCA+CGG - Chr1:19149962-19149981 None:intergenic 35.0%
AGTCATCATCAGAAAATACC+AGG - Chr1:19147193-19147212 None:intergenic 35.0%
ATCACCACTGCTGATAATTA+TGG + Chr1:19148406-19148425 MsG0180001306.01.T01:CDS 35.0%
ATTCATATGTATGTCAGTGC+TGG + Chr1:19150144-19150163 MsG0180001306.01.T01:intron 35.0%
CATCAAGGAACATATCTAGT+TGG + Chr1:19146077-19146096 MsG0180001306.01.T01:CDS 35.0%
CATGAAATATGGCATACTCT+TGG + Chr1:19148716-19148735 MsG0180001306.01.T01:intron 35.0%
CCTAATACCGCAAAAAGTTT+AGG - Chr1:19147031-19147050 None:intergenic 35.0%
CGCATGTTTAAACATGCTAA+AGG + Chr1:19148679-19148698 MsG0180001306.01.T01:CDS 35.0%
CTACTCCAAATGAAGGAATA+GGG - Chr1:19146658-19146677 None:intergenic 35.0%
CTCCCACAAGTATATATAAC+CGG - Chr1:19146114-19146133 None:intergenic 35.0%
CTGTTAGTCAATTTAGTCCA+TGG + Chr1:19145802-19145821 MsG0180001306.01.T01:intron 35.0%
CTTGCACGAATTTGGTATAA+AGG + Chr1:19150330-19150349 MsG0180001306.01.T01:CDS 35.0%
GATTAGATGATAAGTGAGGA+GGG + Chr1:19145959-19145978 MsG0180001306.01.T01:intron 35.0%
GCCATAGGGAAATTACATAA+TGG - Chr1:19149021-19149040 None:intergenic 35.0%
GGAAAAACAACTTGAGCATT+AGG - Chr1:19148857-19148876 None:intergenic 35.0%
GTCACCATATGTATCAATGT+CGG - Chr1:19150069-19150088 None:intergenic 35.0%
GTCCGGTTATATATACTTGT+GGG + Chr1:19146109-19146128 MsG0180001306.01.T01:CDS 35.0%
GTGACAGTATCACACATTTA+AGG + Chr1:19145885-19145904 MsG0180001306.01.T01:intron 35.0%
GTTAGTATGAAGATGCCAAA+TGG - Chr1:19148537-19148556 None:intergenic 35.0%
GTTTAAACATGCTAAAGGTG+TGG + Chr1:19148684-19148703 MsG0180001306.01.T01:intron 35.0%
TAATCACATTAAGGAGCTTC+AGG + Chr1:19149925-19149944 MsG0180001306.01.T01:CDS 35.0%
TAATTCACACATCTTGCTTC+TGG + Chr1:19148210-19148229 MsG0180001306.01.T01:intron 35.0%
TAGAAGATGTACGATTGCTT+GGG - Chr1:19149751-19149770 None:intergenic 35.0%
TATGAGAACTTGCACGAATT+TGG + Chr1:19150322-19150341 MsG0180001306.01.T01:CDS 35.0%
TATGTAATTTCCCTATGGCT+AGG + Chr1:19149022-19149041 MsG0180001306.01.T01:intron 35.0%
TCACAGATCGCGAAAAATAT+TGG - Chr1:19147462-19147481 None:intergenic 35.0%
TCACCACTGCTGATAATTAT+GGG + Chr1:19148407-19148426 MsG0180001306.01.T01:CDS 35.0%
TCGTGGATCATGTAAAATAG+TGG + Chr1:19148003-19148022 MsG0180001306.01.T01:intron 35.0%
TGATTAGATGATAAGTGAGG+AGG + Chr1:19145958-19145977 MsG0180001306.01.T01:intron 35.0%
TGCGACTATTTGACAACATT+TGG + Chr1:19148061-19148080 MsG0180001306.01.T01:intron 35.0%
TGTCACTGCATTCACATAAT+AGG + Chr1:19146505-19146524 MsG0180001306.01.T01:intron 35.0%
TGTCCGGTTATATATACTTG+TGG + Chr1:19146108-19146127 MsG0180001306.01.T01:CDS 35.0%
TTAAAGACTGCTATCAACCT+AGG + Chr1:19149851-19149870 MsG0180001306.01.T01:CDS 35.0%
TTAGAAGATGTACGATTGCT+TGG - Chr1:19149752-19149771 None:intergenic 35.0%
TTGTCAACTAGTGGCTATAA+TGG + Chr1:19147303-19147322 MsG0180001306.01.T01:intron 35.0%
! AGGAAGCATAACAAACTAGA+AGG - Chr1:19150478-19150497 None:intergenic 35.0%
! CAAGCACGTTTTCAATTTTG+GGG + Chr1:19150419-19150438 MsG0180001306.01.T01:three_prime_UTR 35.0%
! CCAAGCACGTTTTCAATTTT+GGG + Chr1:19150418-19150437 MsG0180001306.01.T01:three_prime_UTR 35.0%
! CCTAAACTTTTTGCGGTATT+AGG + Chr1:19147028-19147047 MsG0180001306.01.T01:intron 35.0%
! CTTCTGCTTCTGTTTTCTTA+TGG + Chr1:19145362-19145381 MsG0180001306.01.T01:CDS 35.0%
! GAAATTACATAATGGAGCAC+AGG - Chr1:19149013-19149032 None:intergenic 35.0%
! GCTTGATGCTTGGATTTTAA+TGG + Chr1:19146152-19146171 MsG0180001306.01.T01:intron 35.0%
! GGAAGCATAACAAACTAGAA+GGG - Chr1:19150477-19150496 None:intergenic 35.0%
! TATTTTTCCATCACTACTCC+CGG - Chr1:19148359-19148378 None:intergenic 35.0%
! TATTTTTCGCGATCTGTGAT+TGG + Chr1:19147463-19147482 MsG0180001306.01.T01:intron 35.0%
! TCATCTATTTCTCAGCAACA+AGG + Chr1:19150211-19150230 MsG0180001306.01.T01:intron 35.0%
! TGTTTAAGATCTGGAAAACG+AGG - Chr1:19148478-19148497 None:intergenic 35.0%
! TTTGTTAATTTCTGGGTCTG+AGG + Chr1:19148612-19148631 MsG0180001306.01.T01:CDS 35.0%
!! ATGTTGTGATTGGTAATGGA+GGG + Chr1:19147688-19147707 MsG0180001306.01.T01:intron 35.0%
!! GATGTAAAATTTTGGAGGGT+AGG - Chr1:19146999-19147018 None:intergenic 35.0%
!! GGTGGGAATTTGTTAATTTC+TGG + Chr1:19148604-19148623 MsG0180001306.01.T01:CDS 35.0%
!! TAAAATTTTGGAGGGTAGGA+GGG - Chr1:19146995-19147014 None:intergenic 35.0%
!! TAGTATTGCTTTTGCTTGAC+AGG + Chr1:19148741-19148760 MsG0180001306.01.T01:intron 35.0%
!! TGTTAGTTAGTTCTGTTCTG+CGG + Chr1:19145774-19145793 MsG0180001306.01.T01:intron 35.0%
!!! AGTTTTAAACGGGACAGTTT+TGG + Chr1:19146235-19146254 MsG0180001306.01.T01:intron 35.0%
AAAGCCAACCATTGCGATAA+CGG - Chr1:19146447-19146466 None:intergenic 40.0%
AATGGCGTGTTACAATTCCA+TGG + Chr1:19149435-19149454 MsG0180001306.01.T01:intron 40.0%
AGAAAATACCAGGCAAGTGA+CGG - Chr1:19147183-19147202 None:intergenic 40.0%
AGAAATGGCATGCTCATTTG+AGG + Chr1:19147156-19147175 MsG0180001306.01.T01:CDS 40.0%
AGGAGATGAGTTGTTCAATG+CGG - Chr1:19145124-19145143 None:intergenic 40.0%
AGGATGGAATAGTTCGTGTT+TGG + Chr1:19148632-19148651 MsG0180001306.01.T01:CDS 40.0%
ATAAAGGAGCTATTGGATGG+TGG + Chr1:19150346-19150365 MsG0180001306.01.T01:CDS 40.0%
ATATCACTGCCACATCTCTA+GGG + Chr1:19149238-19149257 MsG0180001306.01.T01:intron 40.0%
CAACTTATCCTGTGCTATGT+TGG - Chr1:19148945-19148964 None:intergenic 40.0%
CAAGGAACATATCTAGTTGG+CGG + Chr1:19146080-19146099 MsG0180001306.01.T01:CDS 40.0%
CAGAGTAGTGTATCCCAAAA+TGG - Chr1:19147574-19147593 None:intergenic 40.0%
CATCCCATAATTATCAGCAG+TGG - Chr1:19148413-19148432 None:intergenic 40.0%
CATTGAACAACTCATCTCCT+CGG + Chr1:19145124-19145143 MsG0180001306.01.T01:five_prime_UTR 40.0%
CATTTAACGACACTACTGCA+GGG + Chr1:19148163-19148182 MsG0180001306.01.T01:intron 40.0%
CCCAAAATTGAAAACGTGCT+TGG - Chr1:19150421-19150440 None:intergenic 40.0%
CGAATTAGCGATTTCATCCA+TGG - Chr1:19149455-19149474 None:intergenic 40.0%
CGGTTATATATACTTGTGGG+AGG + Chr1:19146112-19146131 MsG0180001306.01.T01:CDS 40.0%
CGTCAAGTGATGTAATGACT+TGG - Chr1:19149273-19149292 None:intergenic 40.0%
CTATAACATTGGTGCATAGC+TGG - Chr1:19148041-19148060 None:intergenic 40.0%
CTGGCAGATTGCTTAAGAAA+TGG + Chr1:19147141-19147160 MsG0180001306.01.T01:CDS 40.0%
GAAATGGCATGCTCATTTGA+GGG + Chr1:19147157-19147176 MsG0180001306.01.T01:CDS 40.0%
GACTTAGGTCATGTTTGGAT+TGG - Chr1:19146798-19146817 None:intergenic 40.0%
GAGGAGAAAAAGATAACCTG+TGG - Chr1:19148459-19148478 None:intergenic 40.0%
GAGTCCGACATTGATACATA+TGG + Chr1:19150062-19150081 MsG0180001306.01.T01:intron 40.0%
GCATAAAACACATGTTCAGC+TGG - Chr1:19148337-19148356 None:intergenic 40.0%
GCTTAGCATATAGCAAAGGT+GGG + Chr1:19148587-19148606 MsG0180001306.01.T01:CDS 40.0%
GGTATAAAGGAGCTATTGGA+TGG + Chr1:19150343-19150362 MsG0180001306.01.T01:CDS 40.0%
GTGAAAACTTCAGTATGCCA+GGG - Chr1:19147898-19147917 None:intergenic 40.0%
TAAATGTAATGACACCGGGA+CGG + Chr1:19145676-19145695 MsG0180001306.01.T01:intron 40.0%
TAGTTTCAGCATCAGACGAT+CGG + Chr1:19147724-19147743 MsG0180001306.01.T01:intron 40.0%
TATATCACTGCCACATCTCT+AGG + Chr1:19149237-19149256 MsG0180001306.01.T01:intron 40.0%
TATCAACCTAGGTGATAGCA+GGG + Chr1:19149862-19149881 MsG0180001306.01.T01:CDS 40.0%
TCATGTTCTTCACCTTTCCA+TGG + Chr1:19145286-19145305 MsG0180001306.01.T01:CDS 40.0%
TCATTTAACGACACTACTGC+AGG + Chr1:19148162-19148181 MsG0180001306.01.T01:intron 40.0%
TGAAGATGTGACACTTGACA+TGG + Chr1:19149210-19149229 MsG0180001306.01.T01:intron 40.0%
TGATCAGTGTTGTCAACTAG+TGG + Chr1:19147294-19147313 MsG0180001306.01.T01:intron 40.0%
TGCTTAGCATATAGCAAAGG+TGG + Chr1:19148586-19148605 MsG0180001306.01.T01:CDS 40.0%
TGTGAAAACTTCAGTATGCC+AGG - Chr1:19147899-19147918 None:intergenic 40.0%
TTAATCTCTCTGGATGTTGC+AGG + Chr1:19149686-19149705 MsG0180001306.01.T01:CDS 40.0%
TTACTGTTGAGTCATCACAG+AGG + Chr1:19146605-19146624 MsG0180001306.01.T01:intron 40.0%
TTTAGCAACCAACATAGCAC+AGG + Chr1:19148934-19148953 MsG0180001306.01.T01:intron 40.0%
TTTCCAAATAGCGGCTATAG+TGG + Chr1:19147401-19147420 MsG0180001306.01.T01:intron 40.0%
TTTCTTATGGTCCTTCTCCA+AGG + Chr1:19145375-19145394 MsG0180001306.01.T01:CDS 40.0%
! CTGAACATGTGTTTTATGCC+GGG + Chr1:19148338-19148357 MsG0180001306.01.T01:CDS 40.0%
! CTGGTTCATTTTCTAACCAC+AGG + Chr1:19148440-19148459 MsG0180001306.01.T01:CDS 40.0%
! GCCAAGCACGTTTTCAATTT+TGG + Chr1:19150417-19150436 MsG0180001306.01.T01:three_prime_UTR 40.0%
! GCTGAACATGTGTTTTATGC+CGG + Chr1:19148337-19148356 MsG0180001306.01.T01:CDS 40.0%
! GTGAAGTATGGAGGTTGTTT+TGG + Chr1:19145192-19145211 MsG0180001306.01.T01:exon 40.0%
! TCCTTGATGATTAGCAGCAA+GGG - Chr1:19146066-19146085 None:intergenic 40.0%
! TGCAGTAGTGTCGTTAAATG+AGG - Chr1:19148163-19148182 None:intergenic 40.0%
! TGTAGCTGACCCAATTTTGT+CGG + Chr1:19147961-19147980 MsG0180001306.01.T01:intron 40.0%
! TTAATTTCTGGGTCTGAGGA+TGG + Chr1:19148616-19148635 MsG0180001306.01.T01:CDS 40.0%
! TTCCTTGATGATTAGCAGCA+AGG - Chr1:19146067-19146086 None:intergenic 40.0%
!! AAAAAGTGCCGTTATCGCAA+TGG + Chr1:19146436-19146455 MsG0180001306.01.T01:intron 40.0%
!! AAAATTTTGGAGGGTAGGAG+GGG - Chr1:19146994-19147013 None:intergenic 40.0%
!! CTGATATCTGGTTCTGAAGA+TGG + Chr1:19147218-19147237 MsG0180001306.01.T01:CDS 40.0%
!! GAATGTTGGTGCTACATAGA+TGG - Chr1:19150011-19150030 None:intergenic 40.0%
!! GATGTTGTGATTGGTAATGG+AGG + Chr1:19147687-19147706 MsG0180001306.01.T01:intron 40.0%
!! GTAAAATTTTGGAGGGTAGG+AGG - Chr1:19146996-19147015 None:intergenic 40.0%
!! GTCTTATTTACTCCCTCCAT+TGG + Chr1:19149799-19149818 MsG0180001306.01.T01:CDS 40.0%
!! TTTAAACGGGACAGTTTTGG+AGG + Chr1:19146238-19146257 MsG0180001306.01.T01:intron 40.0%
!!! TAAGAGTTTGGTCGCTTTTC+AGG + Chr1:19147246-19147265 MsG0180001306.01.T01:CDS 40.0%
AAACTTCAGTATGCCAGGGT+TGG - Chr1:19147894-19147913 None:intergenic 45.0%
ACAATGATGTGGAGTCCATG+TGG + Chr1:19149341-19149360 MsG0180001306.01.T01:intron 45.0%
ACACGAGTACCAAAGGACAA+TGG + Chr1:19150273-19150292 MsG0180001306.01.T01:CDS 45.0%
ATCAACCTAGGTGATAGCAG+GGG + Chr1:19149863-19149882 MsG0180001306.01.T01:CDS 45.0%
CAATGGAGATGGCTAACCAA+TGG + Chr1:19150290-19150309 MsG0180001306.01.T01:CDS 45.0%
CGCGTAACTGATGTTGTGAT+TGG + Chr1:19147678-19147697 MsG0180001306.01.T01:intron 45.0%
CTATCAACCTAGGTGATAGC+AGG + Chr1:19149861-19149880 MsG0180001306.01.T01:CDS 45.0%
CTCCATCTCGATTTCAGAAG+CGG - Chr1:19150245-19150264 None:intergenic 45.0%
CTGGAGACATGACAATGATG+TGG + Chr1:19149330-19149349 MsG0180001306.01.T01:intron 45.0%
GATGACTCACTGCTGATATC+TGG + Chr1:19147206-19147225 MsG0180001306.01.T01:CDS 45.0%
GGACACGTTAAACGAAGATG+CGG - Chr1:19149371-19149390 None:intergenic 45.0%
GTACCAAAGGACAATGGAGA+TGG + Chr1:19150279-19150298 MsG0180001306.01.T01:CDS 45.0%
TAGCATCCCCTAAGTGATAG+CGG + Chr1:19146481-19146500 MsG0180001306.01.T01:intron 45.0%
TAGCCATCTCCATTGTCCTT+TGG - Chr1:19150285-19150304 None:intergenic 45.0%
TAGGTATGGAGCTTAGCGAA+AGG + Chr1:19148256-19148275 MsG0180001306.01.T01:intron 45.0%
TATAGATGGAAGCAGCAAGC+AGG - Chr1:19147834-19147853 None:intergenic 45.0%
TCACATTCACGCTTGATGCT+TGG + Chr1:19146142-19146161 MsG0180001306.01.T01:intron 45.0%
TCATGTGTCAGTGTCGTATC+CGG + Chr1:19150120-19150139 MsG0180001306.01.T01:intron 45.0%
TGACGATGGGATAGGTTGTT+GGG + Chr1:19145228-19145247 MsG0180001306.01.T01:CDS 45.0%
TGGACTTGCCCGACAAAATT+GGG - Chr1:19147973-19147992 None:intergenic 45.0%
TGGTTACTTGTAACCAACCC+TGG + Chr1:19147878-19147897 MsG0180001306.01.T01:intron 45.0%
TTAGTGACGCTGTAGCATAG+AGG - Chr1:19148130-19148149 None:intergenic 45.0%
TTCAGCTGGATCCAAGACAA+TGG - Chr1:19148323-19148342 None:intergenic 45.0%
TTGACGATGGGATAGGTTGT+TGG + Chr1:19145227-19145246 MsG0180001306.01.T01:CDS 45.0%
! CCTTGATGATTAGCAGCAAG+GGG - Chr1:19146065-19146084 None:intergenic 45.0%
! GTAGCTGACCCAATTTTGTC+GGG + Chr1:19147962-19147981 MsG0180001306.01.T01:intron 45.0%
! TTTTATGCCGGGAGTAGTGA+TGG + Chr1:19148349-19148368 MsG0180001306.01.T01:CDS 45.0%
!! GCATGCTTTAGAAGGTGACT+CGG - Chr1:19149654-19149673 None:intergenic 45.0%
!! AAAAAAATTAAAAATAACAA+AGG - Chr1:19145414-19145433 None:intergenic 5.0%
!!! CTTTTTTATTTTTAATTTAA+AGG + Chr1:19149980-19149999 MsG0180001306.01.T01:intron 5.0%
AAACCGTCGGCAGTGAAGTA+TGG + Chr1:19145180-19145199 MsG0180001306.01.T01:exon 50.0%
AAGAAAGCGAGAACCGAGAG+AGG - Chr1:19145317-19145336 None:intergenic 50.0%
AAGTCCAGTGCTGTCAATCG+TGG + Chr1:19147986-19148005 MsG0180001306.01.T01:intron 50.0%
ACCTATCCCATCGTCAACAG+AGG - Chr1:19145224-19145243 None:intergenic 50.0%
AGGGGCTTAATAGCTTCAGC+AGG - Chr1:19146047-19146066 None:intergenic 50.0%
AGTGACAGCCGCTATCACTT+AGG - Chr1:19146492-19146511 None:intergenic 50.0%
ATCAGACGATCGGACGTGTA+AGG + Chr1:19147734-19147753 MsG0180001306.01.T01:intron 50.0%
CACAACATCAGTTACGCGCA+TGG - Chr1:19147676-19147695 None:intergenic 50.0%
CACTTCCATCCCTAGAGATG+TGG - Chr1:19149250-19149269 None:intergenic 50.0%
CATCTCGATTTCAGAAGCGG+CGG - Chr1:19150242-19150261 None:intergenic 50.0%
CCCCTTGCTGCTAATCATCA+AGG + Chr1:19146062-19146081 MsG0180001306.01.T01:CDS 50.0%
CCTCTTCCTCTGTTGACGAT+GGG + Chr1:19145215-19145234 MsG0180001306.01.T01:CDS 50.0%
CTGGACTTGCCCGACAAAAT+TGG - Chr1:19147974-19147993 None:intergenic 50.0%
GCACACACACACAGAAAGGA+TGG - Chr1:19148972-19148991 None:intergenic 50.0%
GCACCACTATAGCCGCTATT+TGG - Chr1:19147407-19147426 None:intergenic 50.0%
GGGAGATGTGTTTGCAACAG+TGG + Chr1:19146694-19146713 MsG0180001306.01.T01:intron 50.0%
GGTTGTTGGGACCTTCATAC+AGG + Chr1:19145241-19145260 MsG0180001306.01.T01:CDS 50.0%
GTGACAGCCGCTATCACTTA+GGG - Chr1:19146491-19146510 None:intergenic 50.0%
TCCTCTGTTGACGATGGGAT+AGG + Chr1:19145220-19145239 MsG0180001306.01.T01:CDS 50.0%
TGACAGCCGCTATCACTTAG+GGG - Chr1:19146490-19146509 None:intergenic 50.0%
TGATCCACGATTGACAGCAC+TGG - Chr1:19147993-19148012 None:intergenic 50.0%
TTGCGCACACACACACAGAA+AGG - Chr1:19148976-19148995 None:intergenic 50.0%
TTTCTGTGTGTGTGTGCGCA+AGG + Chr1:19148975-19148994 MsG0180001306.01.T01:intron 50.0%
! AGTGCCGTTATCGCAATGGT+TGG + Chr1:19146440-19146459 MsG0180001306.01.T01:intron 50.0%
! CAGTCATTAGAGGGCATGAC+AGG - Chr1:19149392-19149411 None:intergenic 50.0%
! CTTCACTGCCGACGGTTTTA+CGG - Chr1:19145178-19145197 None:intergenic 50.0%
ACACCAACATGACACCGTCC+CGG - Chr1:19145693-19145712 None:intergenic 55.0%
AGAGAGGCAAGGCCATGGAA+AGG - Chr1:19145301-19145320 None:intergenic 55.0%
AGGTGATAGCAGGGGATGCA+TGG + Chr1:19149871-19149890 MsG0180001306.01.T01:CDS 55.0%
CATCTCCTCGGAAAACGTCC+CGG + Chr1:19145136-19145155 MsG0180001306.01.T01:five_prime_UTR 55.0%
CCCATCGTCAACAGAGGAAG+AGG - Chr1:19145218-19145237 None:intergenic 55.0%
CCTCCATACTTCACTGCCGA+CGG - Chr1:19145186-19145205 None:intergenic 55.0%
CGAAGATGCGGAAGTCCACA+TGG - Chr1:19149359-19149378 None:intergenic 55.0%
GAAAACGTCCCGGAGTTTGC+CGG + Chr1:19145146-19145165 MsG0180001306.01.T01:five_prime_UTR 55.0%
GCCTCTTCCTCTGTTGACGA+TGG + Chr1:19145214-19145233 MsG0180001306.01.T01:CDS 55.0%
GCTGCTCAGCACCTGTATGA+AGG - Chr1:19145255-19145274 None:intergenic 55.0%
TGCATCCCCTGCTATCACCT+AGG - Chr1:19149871-19149890 None:intergenic 55.0%
! AAACTCCGGGACGTTTTCCG+AGG - Chr1:19145144-19145163 None:intergenic 55.0%
! CACTGCCACATCTCTAGGGA+TGG + Chr1:19149242-19149261 MsG0180001306.01.T01:intron 55.0%
! CTAGTTGGCGGAGCTTTGTC+CGG + Chr1:19146092-19146111 MsG0180001306.01.T01:CDS 55.0%
! TTCCATGGCCTTGCCTCTCT+CGG + Chr1:19145301-19145320 MsG0180001306.01.T01:CDS 55.0%
!! CGCCGCTTCTGAAATCGAGA+TGG + Chr1:19150240-19150259 MsG0180001306.01.T01:CDS 55.0%
AACCGAGAGAGGCAAGGCCA+TGG - Chr1:19145306-19145325 None:intergenic 60.0%
AACGACACTACTGCAGGGCC+TGG + Chr1:19148168-19148187 MsG0180001306.01.T01:intron 60.0%
AGCGAGAACCGAGAGAGGCA+AGG - Chr1:19145312-19145331 None:intergenic 60.0%
CCGTCGGCAGTGAAGTATGG+AGG + Chr1:19145183-19145202 MsG0180001306.01.T01:exon 60.0%
CTTAGGGGATGCTACGCTGC+TGG - Chr1:19146475-19146494 None:intergenic 60.0%
TTTGAGGGCCGTCACTTGCC+TGG + Chr1:19147172-19147191 MsG0180001306.01.T01:CDS 60.0%
! CACTGCCGACGGTTTTACGG+CGG - Chr1:19145175-19145194 None:intergenic 60.0%
!! ACACCGGGACGGTGTCATGT+TGG + Chr1:19145687-19145706 MsG0180001306.01.T01:intron 60.0%
AACGTCCCGGAGTTTGCCGG+CGG + Chr1:19145149-19145168 MsG0180001306.01.T01:five_prime_UTR 65.0%
AGGGGATGCTACGCTGCTGG+TGG - Chr1:19146472-19146491 None:intergenic 65.0%
CGGCGAGTCCAGCTTGCGTT+CGG - Chr1:19145104-19145123 None:intergenic 65.0%
GCGAGTCCAGCTTGCGTTCG+GGG - Chr1:19145102-19145121 None:intergenic 65.0%
GGCGAGTCCAGCTTGCGTTC+GGG - Chr1:19145103-19145122 None:intergenic 65.0%
GGGATGCTACGCTGCTGGTG+GGG - Chr1:19146470-19146489 None:intergenic 65.0%
GGGGATGCTACGCTGCTGGT+GGG - Chr1:19146471-19146490 None:intergenic 65.0%
AGCTTGCGTTCGGGGCTCCG+AGG - Chr1:19145094-19145113 None:intergenic 70.0%
GCTTGCGTTCGGGGCTCCGA+GGG - Chr1:19145093-19145112 None:intergenic 70.0%
GGCGGCCGCCGTAAAACCGT+CGG + Chr1:19145167-19145186 MsG0180001306.01.T01:five_prime_UTR 70.0%
TCGGAGCCCCGAACGCAAGC+TGG + Chr1:19145093-19145112 MsG0180001306.01.T01:five_prime_UTR 70.0%
! GACGGTTTTACGGCGGCCGC+CGG - Chr1:19145168-19145187 None:intergenic 70.0%
! CGGCGGCCGCCGGCAAACTC+CGG - Chr1:19145158-19145177 None:intergenic 80.0%
! GGCGGCCGCCGGCAAACTCC+GGG - Chr1:19145157-19145176 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr1 gene 19145063 19150622 19145063 ID=MsG0180001306.01;Name=MsG0180001306.01
Chr1 mRNA 19145063 19150622 19145063 ID=MsG0180001306.01.T01;Parent=MsG0180001306.01;Name=MsG0180001306.01.T01;_AED=0.50;_eAED=0.53;_QI=136|0.66|0.57|1|0.66|0.57|7|220|437
Chr1 exon 19145063 19145396 19145063 ID=MsG0180001306.01.T01:exon:6381;Parent=MsG0180001306.01.T01
Chr1 exon 19146020 19146133 19146020 ID=MsG0180001306.01.T01:exon:6382;Parent=MsG0180001306.01.T01
Chr1 exon 19147134 19147301 19147134 ID=MsG0180001306.01.T01:exon:6383;Parent=MsG0180001306.01.T01
Chr1 exon 19148259 19148461 19148259 ID=MsG0180001306.01.T01:exon:6384;Parent=MsG0180001306.01.T01
Chr1 exon 19148573 19148702 19148573 ID=MsG0180001306.01.T01:exon:6385;Parent=MsG0180001306.01.T01
Chr1 exon 19149623 19149946 19149623 ID=MsG0180001306.01.T01:exon:6386;Parent=MsG0180001306.01.T01
Chr1 exon 19150226 19150622 19150226 ID=MsG0180001306.01.T01:exon:6387;Parent=MsG0180001306.01.T01
Chr1 five_prime_UTR 19145063 19145198 19145063 ID=MsG0180001306.01.T01:five_prime_utr;Parent=MsG0180001306.01.T01
Chr1 CDS 19145199 19145396 19145199 ID=MsG0180001306.01.T01:cds;Parent=MsG0180001306.01.T01
Chr1 CDS 19146020 19146133 19146020 ID=MsG0180001306.01.T01:cds;Parent=MsG0180001306.01.T01
Chr1 CDS 19147134 19147301 19147134 ID=MsG0180001306.01.T01:cds;Parent=MsG0180001306.01.T01
Chr1 CDS 19148259 19148461 19148259 ID=MsG0180001306.01.T01:cds;Parent=MsG0180001306.01.T01
Chr1 CDS 19148573 19148702 19148573 ID=MsG0180001306.01.T01:cds;Parent=MsG0180001306.01.T01
Chr1 CDS 19149623 19149946 19149623 ID=MsG0180001306.01.T01:cds;Parent=MsG0180001306.01.T01
Chr1 CDS 19150226 19150402 19150226 ID=MsG0180001306.01.T01:cds;Parent=MsG0180001306.01.T01
Chr1 three_prime_UTR 19150403 19150622 19150403 ID=MsG0180001306.01.T01:three_prime_utr;Parent=MsG0180001306.01.T01
Gene Sequence

>MsG0180001306.01.T01

ATGGAGGTTGTTTTGGCCTCTTCCTCTGTTGACGATGGGATAGGTTGTTGGGACCTTCATACAGGTGCTGAGCAGCTACGTTACAAATCATGTTCTTCACCTTTCCATGGCCTTGCCTCTCTCGGTTCTCGCTTTCTTGCTTCTTCTCAGCTTCGTCACCCTTCTTCTGCTTCTGTTTTCTTATGGTCCTTCTCCAAGCCGCAAGTTGAAGTTAAGAGCTTTCCTGCTGAAGCTATTAAGCCCCTTGCTGCTAATCATCAAGGAACATATCTAGTTGGCGGAGCTTTGTCCGGTTATATATACTTGTGGGAGGTTGAAACTGGCAGATTGCTTAAGAAATGGCATGCTCATTTGAGGGCCGTCACTTGCCTGGTATTTTCTGATGATGACTCACTGCTGATATCTGGTTCTGAAGATGGATATGTAAGAGTTTGGTCGCTTTTCAGGTATTTGATAATTGATATACTCATCTTGATCAGTGTATGGAGCTTAGCGAAAGGAACACTACTAAGAAGTATAGTTTTCCCATCAATAATTAATGCCATTGTCTTGGATCCAGCTGAACATGTGTTTTATGCCGGGAGTAGTGATGGAAAAATAGTTATTGCTGCACTTAACACTGAAAGAATCACCACTGCTGATAATTATGGGATGCATATCACTGGTTCATTTTCTAACCACAGCAAGGCAGTTACTTGCTTAGCATATAGCAAAGGTGGGAATTTGTTAATTTCTGGGTCTGAGGATGGAATAGTTCGTGTTTGGAATGCTAAAACTCGCAACATTGTTCGCATGTTTAAACATGCTAAAGGTTTTATTCTTAGATGGCATGTTTTCATGACCGAGTCACCTTCTAAAGCATGCATTTCTTACATGTTAATCTCTCTGGATGTTGCAGGACCTATAACTAATATTCTTGTTGTTAGACAAGAAATCGACCCAAGCAATCGTACATCTTCTAATTTACAAGCATCCACAAAAAAAAATGGGTCTTATTTACTCCCTCCATTGGAAAAATATGCAAATTCAACAGATTCAGATTTAAAGACTGCTATCAACCTAGGTGATAGCAGGGGATGCATGGATGTTTCATACAACAGTTCTAATGTGATATCTAATCACATTAAGGAGCTTCAGCAACAAGGTTCAGCCGCCGCTTCTGAAATCGAGATGGAGAAACTAAAACACGAGTACCAAAGGACAATGGAGATGGCTAACCAATGGAAGAAAATGTATGAGAACTTGCACGAATTTGGTATAAAGGAGCTATTGGATGGTGGTCAAACAAGAACCTTCGATGAAGATGACAAATAA
Protein sequence

>MsG0180001306.01.T01

MEVVLASSSVDDGIGCWDLHTGAEQLRYKSCSSPFHGLASLGSRFLASSQLRHPSSASVFLWSFSKPQVEVKSFPAEAIKPLAANHQGTYLVGGALSGYIYLWEVETGRLLKKWHAHLRAVTCLVFSDDDSLLISGSEDGYVRVWSLFRYLIIDILILISVWSLAKGTLLRSIVFPSIINAIVLDPAEHVFYAGSSDGKIVIAALNTERITTADNYGMHITGSFSNHSKAVTCLAYSKGGNLLISGSEDGIVRVWNAKTRNIVRMFKHAKGFILRWHVFMTESPSKACISYMLISLDVAGPITNILVVRQEIDPSNRTSSNLQASTKKNGSYLLPPLEKYANSTDSDLKTAINLGDSRGCMDVSYNSSNVISNHIKELQQQGSAAASEIEMEKLKHEYQRTMEMANQWKKMYENLHEFGIKELLDGGQTRTFDEDDK*