AlfalfaGEDB | MsG0580025209.01

M. sativa cultivar ZhongmuNo.1 / MsG0580025209.01

KEGG: K08832
GO: GO:0004672 GO:0005524 GO:0006468
PFAM: PF00069

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025209.01.T01	XP_003612370.1	98.655	446	6	0	1	446	1	446	0	922

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025209.01.T01	Q45FA5	45.209	407	205	7	10	414	29	419	2.92E-113	342

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025209.01.T01	G7K189	98.655	446	6	0	1	446	1	446	0.0	922

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380016898.01	MsG0580025209.01	0.821105	4.817321e-53	3.883260e-50

Showing 1 to 1 of 1 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0180001306.01	MsG0580025209.01	PPI
MsG0580025209.01	MsG0580029371.01	PPI
MsG0580025209.01	MsG0780041250.01	PPI
MsG0580025209.01	MsG0180003433.01	PPI
MsG0580025209.01	MsG0380016864.01	PPI
MsG0580025209.01	MsG0180004144.01	PPI

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025209.01.T01	MTR_5g024270	98.655	446	6	0	1	446	1	446	0.0	922
MsG0580025209.01.T01	MTR_8g073250	81.614	446	78	2	1	446	1	442	0.0	740
MsG0580025209.01.T01	MTR_5g024270	98.246	342	6	0	1	342	1	342	0.0	705
MsG0580025209.01.T01	MTR_1g061690	52.643	473	164	6	2	415	8	479	5.22e-174	499
MsG0580025209.01.T01	MTR_2g084555	48.256	516	187	5	6	442	8	522	2.23e-169	487
MsG0580025209.01.T01	MTR_4g056390	51.282	468	163	5	12	415	13	479	4.71e-168	483
MsG0580025209.01.T01	MTR_3g109390	30.491	387	197	12	37	414	73	396	2.51e-41	152
MsG0580025209.01.T01	MTR_3g109390	29.695	394	193	11	37	414	51	376	5.00e-41	150
MsG0580025209.01.T01	MTR_3g109390	29.695	394	193	11	37	414	73	398	7.33e-41	150
MsG0580025209.01.T01	MTR_3g109390	29.870	385	186	11	47	415	70	386	1.90e-40	149

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580025209.01.T01	AT4G35500	73.318	446	107	4	1	443	1	437	0.0	658
MsG0580025209.01.T01	AT2G17530	75.955	445	96	4	1	443	1	436	0.0	650
MsG0580025209.01.T01	AT2G17530	75.955	445	96	4	1	443	1	436	0.0	650
MsG0580025209.01.T01	AT4G35500	71.141	447	116	5	1	443	1	438	0.0	634
MsG0580025209.01.T01	AT2G17530	79.592	343	67	3	1	341	1	342	0.0	519
MsG0580025209.01.T01	AT3G53030	49.505	505	186	7	5	442	7	509	6.87e-171	490
MsG0580025209.01.T01	AT3G44850	51.398	465	164	5	12	415	19	482	3.20e-163	471
MsG0580025209.01.T01	AT5G22840	50.644	466	171	6	4	415	11	471	4.25e-163	471
MsG0580025209.01.T01	AT4G32660	29.877	405	210	12	21	414	47	388	3.14e-42	154
MsG0580025209.01.T01	AT4G32660	29.877	405	210	12	21	414	55	396	3.34e-42	154

Showing 1 to 10 of 60 entries

Previous1 2 3 4 5 6Next

Find 137 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACGTTGATCTCGTGA+AGG	0.622147	5:+15345866	None:intergenic
AAATCAAGGTAGGAAAGTGA+AGG	0.604919	5:-15344045	MsG0580025209.01.T01:exon
AAATGAATCTACTGTGGAAA+AGG	0.456827	5:-15344092	MsG0580025209.01.T01:CDS
AAATGGGCAGCACCATTGCA+TGG	0.610699	5:-15345767	MsG0580025209.01.T01:CDS
AACAAAACACAAGACCCAGA+TGG	0.607452	5:+15347338	None:intergenic
AACCAAACAATTCAAACCAT+CGG	0.532824	5:+15343929	None:intergenic
AACTCCTCGGAAAGATGCCC+CGG	0.493756	5:-15344449	MsG0580025209.01.T01:CDS
AAGAACGTTGATCTCGTGAA+GGG	0.630667	5:+15345867	None:intergenic
AAGGATTACTTTGACCGGCA+TGG	0.580864	5:-15344322	MsG0580025209.01.T01:CDS
AAGGGCAGCCTGAACAAACT+CGG	0.595404	5:+15345885	None:intergenic

Showing 1 to 10 of 137 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAACAATGTAACATAAGGTC+AGG	+	Chr5:15344404-15344423	None:intergenic	30.0%
AAATGAATCTACTGTGGAAA+AGG	-	Chr5:15347083-15347102	MsG0580025209.01.T01:intron	30.0%
AACCAAACAATTCAAACCAT+CGG	+	Chr5:15347249-15347268	None:intergenic	30.0%
AAGACAATTATTCTCATTCC+CGG	+	Chr5:15344515-15344534	None:intergenic	30.0%
AAGACTTGTGATACCATAAA+TGG	-	Chr5:15344609-15344628	MsG0580025209.01.T01:intron	30.0%
AATATGGAACCATCTTGATT+AGG	+	Chr5:15345027-15345046	None:intergenic	30.0%
AATGAGAAATGAATCTACTG+TGG	-	Chr5:15347077-15347096	MsG0580025209.01.T01:intron	30.0%
ACAACAAACTTTGAATTCGA+TGG	+	Chr5:15345355-15345374	None:intergenic	30.0%
ACATGAAGAAAAGATGAACT+TGG	+	Chr5:15345089-15345108	None:intergenic	30.0%
AGTTTAAGAAGAACATACAG+AGG	+	Chr5:15344071-15344090	None:intergenic	30.0%

Showing 1 to 10 of 261 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	15343665	15347532	15343665	ID=MsG0580025209.01;Name=MsG0580025209.01
Chr5	mRNA	15343665	15347532	15343665	ID=MsG0580025209.01.T01;Parent=MsG0580025209.01;Name=MsG0580025209.01.T01;_AED=0.27;_eAED=0.27;_QI=225\|1\|1\|1\|1\|1\|4\|383\|446
Chr5	exon	15343665	15344368	15343665	ID=MsG0580025209.01.T01:exon:6231;Parent=MsG0580025209.01.T01
Chr5	exon	15344446	15344493	15344446	ID=MsG0580025209.01.T01:exon:6230;Parent=MsG0580025209.01.T01
Chr5	exon	15345153	15345941	15345153	ID=MsG0580025209.01.T01:exon:6229;Parent=MsG0580025209.01.T01
Chr5	exon	15347125	15347532	15347125	ID=MsG0580025209.01.T01:exon:6228;Parent=MsG0580025209.01.T01
Chr5	five_prime_UTR	15347308	15347532	15347308	ID=MsG0580025209.01.T01:five_prime_utr;Parent=MsG0580025209.01.T01
Chr5	CDS	15347125	15347307	15347125	ID=MsG0580025209.01.T01:cds;Parent=MsG0580025209.01.T01
Chr5	CDS	15345153	15345941	15345153	ID=MsG0580025209.01.T01:cds;Parent=MsG0580025209.01.T01
Chr5	CDS	15344446	15344493	15344446	ID=MsG0580025209.01.T01:cds;Parent=MsG0580025209.01.T01
Chr5	CDS	15344048	15344368	15344048	ID=MsG0580025209.01.T01:cds;Parent=MsG0580025209.01.T01
Chr5	three_prime_UTR	15343665	15344047	15343665	ID=MsG0580025209.01.T01:three_prime_utr;Parent=MsG0580025209.01.T01

Gene Sequence

>MsG0580025209.01.T01

ATGTCTTGTTCTTCTTCATCAGGATCGGAGGAAGATGATGAGGGATTTGAGTCCTATCGGAAAGGTGGATACCATGCTGTTAGAGTCGCTGATCAATTCGCGGGTGGGAGGTATATTGCTCAGAGGAAACTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCTTATGATACTACCACCTCTTCATACGTTGCTCTCAAAATCCAGAAAAGTGCGGCCGAGTTTGTTCAGGCTGCCCTTCACGAGATCAACGTTCTTTCAACCATTGCTGATGGGGACCCATCGAATTCAAAGTTTGTTGTCCAATTGATTGATAACTTTAAGCACACAGGTCCAAATGGGCAGCACCATTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTTCGTTTGATCAAATACAGCCATTACAAAGGTCTTCCATTGAATAAAGTTAGAGAGATTTGTAAATACATTTTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACACAGACTTGAAGCCTGAAAACATTCTTCTATTTTCAACTATTGATCCTTCCAAAGACCCTTTTAGATCCGGACTCTCCCCAACTTTAGAACGGACTGAGGGAAACACAAACGGTGGACTTACAAGTCTTATTGAGAAAAGGCTGAAGAGAAGAGCAAAGCGTGCAGTTGCTAAAATATCGGGAAGAACAGCTTCAATTGAAGGAAGAGGAGAAGCTGCAAAGTCTAGTAGAAATACCGACGGGATTGATATGAGATGCAAGATTGTCGATTTTGGAAATGCGTGTTGGGCTGATAACAAGTTTGCAGAAGAAATACAGACAAGACAATATAGAGCTCCTGAAATTATACTGAAGTCTGGTTATTCCTTCTCTGTAGACATGTGGTCTTTTGCTTGCATTGCTTTCGAGCTTGCCACTGGAGATATGTTATTTACACCCAAAGGTGGTGGACAAGGTTATAGCGAGGATGAGGATCATCTTGCCTTGATGATGGAACTCCTCGGAAAGATGCCCCGGAAGATTGCAATTGGTGGAGCTCAATCCAAGGATTACTTTGACCGGCATGGTGATCTAAAAAGGATTCGTAGGCTAAAATTTTGTCCACTTGACAAATTGCTGATTGATAGATATAAATTTTCAGCGAATGATGCTCAAGAGTTTTCAGAATTTCTTTTGCCACTTTTTGATTTTGCGCCAGAAAAACGACCAACTGCACAGCAATACCTGCAACACCCCTGGCTGAACTGCAATGAATCAGCGCCAAATGAAATGAGAAATGAATCTACTGTGGAAAAGGTTAATGTTGGTATGAGCAACCTTCAAATCAAGGTAGGAAAGTGA

Protein sequence

>MsG0580025209.01.T01

MSCSSSSGSEEDDEGFESYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSSYVALKIQKSAAEFVQAALHEINVLSTIADGDPSNSKFVVQLIDNFKHTGPNGQHHCMVLEFLGDSLLRLIKYSHYKGLPLNKVREICKYILIGLDYLHSELGIIHTDLKPENILLFSTIDPSKDPFRSGLSPTLERTEGNTNGGLTSLIEKRLKRRAKRAVAKISGRTASIEGRGEAAKSSRNTDGIDMRCKIVDFGNACWADNKFAEEIQTRQYRAPEIILKSGYSFSVDMWSFACIAFELATGDMLFTPKGGGQGYSEDEDHLALMMELLGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFCPLDKLLIDRYKFSANDAQEFSEFLLPLFDFAPEKRPTAQQYLQHPWLNCNESAPNEMRNESTVEKVNVGMSNLQIKVGK*