AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025209.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025209.01.T01 MTR_5g024270 98.655 446 6 0 1 446 1 446 0.0 922
MsG0580025209.01.T01 MTR_8g073250 81.614 446 78 2 1 446 1 442 0.0 740
MsG0580025209.01.T01 MTR_5g024270 98.246 342 6 0 1 342 1 342 0.0 705
MsG0580025209.01.T01 MTR_1g061690 52.643 473 164 6 2 415 8 479 5.22e-174 499
MsG0580025209.01.T01 MTR_2g084555 48.256 516 187 5 6 442 8 522 2.23e-169 487
MsG0580025209.01.T01 MTR_4g056390 51.282 468 163 5 12 415 13 479 4.71e-168 483
MsG0580025209.01.T01 MTR_3g109390 30.491 387 197 12 37 414 73 396 2.51e-41 152
MsG0580025209.01.T01 MTR_3g109390 29.695 394 193 11 37 414 51 376 5.00e-41 150
MsG0580025209.01.T01 MTR_3g109390 29.695 394 193 11 37 414 73 398 7.33e-41 150
MsG0580025209.01.T01 MTR_3g109390 29.870 385 186 11 47 415 70 386 1.90e-40 149
MsG0580025209.01.T01 MTR_3g109390 29.870 385 186 11 47 415 92 408 4.04e-40 149
MsG0580025209.01.T01 MTR_3g076540 27.475 404 221 10 21 414 78 419 2.80e-37 141
MsG0580025209.01.T01 MTR_4g104620 28.180 401 216 11 21 411 82 420 6.22e-37 140
MsG0580025209.01.T01 MTR_3g076540 27.835 388 209 9 37 414 11 337 7.41e-37 138
MsG0580025209.01.T01 MTR_3g109390 31.250 320 159 9 37 356 73 331 1.82e-36 137
MsG0580025209.01.T01 MTR_4g104620 28.496 379 200 10 43 411 9 326 1.32e-35 134
MsG0580025209.01.T01 MTR_3g076540 27.559 381 205 9 44 414 1 320 3.13e-35 133
MsG0580025209.01.T01 MTR_4g104620 28.307 378 200 10 44 411 1 317 4.99e-35 133
MsG0580025209.01.T01 MTR_3g076540 26.942 412 221 11 21 414 78 427 7.97e-35 134
MsG0580025209.01.T01 MTR_3g086530 27.873 409 217 12 21 415 77 421 8.60e-35 134
MsG0580025209.01.T01 MTR_3g086530 28.363 342 180 9 21 358 77 357 1.18e-34 133
MsG0580025209.01.T01 MTR_3g086530 28.142 366 186 11 64 415 2 304 1.48e-30 120
MsG0580025209.01.T01 MTR_3g086530 28.223 287 154 8 21 306 77 312 3.32e-28 114
MsG0580025209.01.T01 MTR_5g082700 23.990 396 207 11 29 414 394 705 8.82e-23 101
MsG0580025209.01.T01 MTR_8g070930 40.000 145 81 3 37 180 138 277 3.86e-22 100
MsG0580025209.01.T01 MTR_8g070930 38.532 109 59 3 254 361 285 386 2.24e-13 72.8
MsG0580025209.01.T01 MTR_3g086530 27.687 307 150 9 123 415 1 249 6.16e-22 95.1
MsG0580025209.01.T01 MTR_6g074905 30.769 169 102 5 252 414 1005 1164 5.66e-19 90.5
MsG0580025209.01.T01 MTR_0349s0030 30.588 170 103 5 252 415 125 285 8.53e-19 87.0
MsG0580025209.01.T01 MTR_5g082700 34.194 155 93 3 29 179 394 543 3.30e-16 81.3
MsG0580025209.01.T01 MTR_5g082700 33.987 153 92 3 29 177 394 541 4.38e-16 81.3
MsG0580025209.01.T01 MTR_1g111180 35.165 182 84 8 254 414 823 991 5.54e-15 78.2
MsG0580025209.01.T01 MTR_1g111180 30.814 172 100 5 11 177 658 815 4.04e-14 75.5
MsG0580025209.01.T01 MTR_1g111180 35.165 182 84 8 254 414 822 990 5.89e-15 77.8
MsG0580025209.01.T01 MTR_1g111180 30.814 172 100 5 11 177 657 814 4.18e-14 75.1
MsG0580025209.01.T01 MTR_6g074870 29.839 124 76 3 252 371 236 352 1.14e-12 69.3
MsG0580025209.01.T01 MTR_6g074750 41.667 60 33 1 252 309 54 113 1.07e-11 62.0
MsG0580025209.01.T01 MTR_3g110180 30.822 146 85 5 34 177 5 136 4.82e-11 64.7
MsG0580025209.01.T01 MTR_3g110180 30.822 146 85 5 34 177 5 136 4.83e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025209.01.T01 AT4G35500 73.318 446 107 4 1 443 1 437 0.0 658
MsG0580025209.01.T01 AT2G17530 75.955 445 96 4 1 443 1 436 0.0 650
MsG0580025209.01.T01 AT2G17530 75.955 445 96 4 1 443 1 436 0.0 650
MsG0580025209.01.T01 AT4G35500 71.141 447 116 5 1 443 1 438 0.0 634
MsG0580025209.01.T01 AT2G17530 79.592 343 67 3 1 341 1 342 0.0 519
MsG0580025209.01.T01 AT3G53030 49.505 505 186 7 5 442 7 509 6.87e-171 490
MsG0580025209.01.T01 AT3G44850 51.398 465 164 5 12 415 19 482 3.20e-163 471
MsG0580025209.01.T01 AT5G22840 50.644 466 171 6 4 415 11 471 4.25e-163 471
MsG0580025209.01.T01 AT4G32660 29.877 405 210 12 21 414 47 388 3.14e-42 154
MsG0580025209.01.T01 AT4G32660 29.877 405 210 12 21 414 55 396 3.34e-42 154
MsG0580025209.01.T01 AT4G24740 28.818 406 213 12 21 414 44 385 4.23e-38 142
MsG0580025209.01.T01 AT4G32660 30.564 337 172 10 21 356 55 330 5.88e-38 141
MsG0580025209.01.T01 AT4G24740 28.818 406 213 12 21 414 82 423 8.95e-38 142
MsG0580025209.01.T01 AT4G24740 28.982 383 197 11 44 414 1 320 1.49e-36 137
MsG0580025209.01.T01 AT4G24740 28.982 383 197 11 44 414 1 320 1.49e-36 137
MsG0580025209.01.T01 AT4G24740 28.982 383 197 11 44 414 1 320 1.49e-36 137
MsG0580025209.01.T01 AT3G53570 28.606 409 215 13 21 415 99 444 2.11e-36 139
MsG0580025209.01.T01 AT3G53570 28.606 409 215 13 21 415 99 444 2.11e-36 139
MsG0580025209.01.T01 AT3G53570 28.606 409 215 13 21 415 99 444 2.11e-36 139
MsG0580025209.01.T01 AT3G53570 28.606 409 215 13 21 415 85 430 2.49e-36 139
MsG0580025209.01.T01 AT3G53570 28.606 409 215 13 21 415 85 430 2.49e-36 139
MsG0580025209.01.T01 AT4G24740 30.218 321 165 9 21 341 82 343 1.85e-34 132
MsG0580025209.01.T01 AT4G24740 30.537 298 149 8 44 341 1 240 4.41e-33 125
MsG0580025209.01.T01 AT4G32660 30.233 344 167 12 82 414 3 284 1.65e-32 125
MsG0580025209.01.T01 AT4G24740 30.070 286 148 8 21 306 82 315 2.00e-28 114
MsG0580025209.01.T01 AT5G35980 38.667 150 86 3 37 185 86 230 2.46e-22 100
MsG0580025209.01.T01 AT5G35980 41.414 99 51 2 254 352 232 323 6.56e-15 77.8
MsG0580025209.01.T01 AT5G35980 38.667 150 86 3 37 185 121 265 2.53e-22 100
MsG0580025209.01.T01 AT5G35980 41.414 99 51 2 254 352 267 358 6.85e-15 77.8
MsG0580025209.01.T01 AT5G35980 38.667 150 86 3 37 185 121 265 2.66e-22 100
MsG0580025209.01.T01 AT5G35980 41.414 99 51 2 254 352 267 358 7.86e-15 77.4
MsG0580025209.01.T01 AT1G73460 32.353 170 100 5 252 415 1001 1161 6.12e-21 96.7
MsG0580025209.01.T01 AT1G73460 32.258 155 96 3 29 179 849 998 1.71e-13 73.6
MsG0580025209.01.T01 AT1G73460 32.353 170 100 5 252 415 1001 1161 6.12e-21 96.7
MsG0580025209.01.T01 AT1G73460 32.258 155 96 3 29 179 849 998 1.71e-13 73.6
MsG0580025209.01.T01 AT1G73450 32.353 170 100 5 252 415 984 1144 6.60e-21 96.7
MsG0580025209.01.T01 AT1G73450 32.258 155 96 3 29 179 832 981 1.83e-13 73.2
MsG0580025209.01.T01 AT4G24740 29.057 265 119 8 162 414 10 217 1.85e-20 90.1
MsG0580025209.01.T01 AT4G24740 29.057 265 119 8 162 414 10 217 1.85e-20 90.1
MsG0580025209.01.T01 AT2G40120 24.060 399 213 12 29 419 252 568 2.07e-20 94.4
MsG0580025209.01.T01 AT3G17750 31.361 169 101 5 252 414 970 1129 1.59e-17 85.9
MsG0580025209.01.T01 AT3G17750 31.953 169 102 5 15 179 808 967 1.92e-13 73.2
MsG0580025209.01.T01 AT3G53640 33.520 179 92 6 254 414 470 639 4.83e-17 84.0
MsG0580025209.01.T01 AT3G53640 31.395 172 99 5 11 177 305 462 2.29e-12 69.7
MsG0580025209.01.T01 AT3G12690 26.923 286 176 9 42 315 189 453 2.23e-14 75.9
MsG0580025209.01.T01 AT3G12690 26.923 286 176 9 42 315 189 453 2.23e-14 75.9
MsG0580025209.01.T01 AT3G12690 26.923 286 176 9 42 315 189 453 2.23e-14 75.9
MsG0580025209.01.T01 AT3G25840 32.203 177 96 6 254 414 502 670 3.71e-14 75.1
MsG0580025209.01.T01 AT3G25840 30.233 172 101 5 11 177 337 494 2.69e-12 69.3
MsG0580025209.01.T01 AT1G13350 31.395 172 99 5 11 177 424 581 3.83e-14 75.1
MsG0580025209.01.T01 AT1G13350 30.726 179 97 6 254 414 589 758 5.40e-14 74.7
MsG0580025209.01.T01 AT1G13350 31.395 172 99 5 11 177 451 608 4.95e-14 75.1
MsG0580025209.01.T01 AT1G13350 30.726 179 97 6 254 414 616 785 6.40e-14 74.7
MsG0580025209.01.T01 AT1G13350 30.726 179 97 6 254 414 662 831 6.08e-14 74.7
MsG0580025209.01.T01 AT1G13350 31.395 172 99 5 11 177 497 654 6.41e-14 74.7
MsG0580025209.01.T01 AT3G25840 32.203 177 96 6 254 414 764 932 7.96e-14 74.3
MsG0580025209.01.T01 AT3G25840 30.233 172 101 5 11 177 599 756 2.50e-12 69.7
MsG0580025209.01.T01 AT2G36350 26.910 301 184 11 42 324 563 845 5.25e-12 68.6
MsG0580025209.01.T01 AT3G20830 23.469 294 189 10 40 320 23 293 1.77e-11 66.2
MsG0580025209.01.T01 AT1G04440 28.571 147 93 4 31 177 2 136 7.80e-11 64.3

Find 137 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACCACAATCAAACAATT+TGG 0.195307 5:-15343998 MsG0580025209.01.T01:three_prime_UTR
AGATGCAAGATTGTCGATTT+TGG 0.199942 5:-15345349 MsG0580025209.01.T01:CDS
CTTTATGACATTCTTTCTAT+TGG 0.220169 5:-15343799 MsG0580025209.01.T01:three_prime_UTR
ACCGGCATGGTGATCTAAAA+AGG 0.287476 5:-15344309 MsG0580025209.01.T01:CDS
CCAGACTTCAGTATAATTTC+AGG 0.291729 5:+15345265 None:intergenic
ACTATGTCAAAACCCGGATT+TGG 0.308186 5:+15343876 None:intergenic
ATAACCTTGTCCACCACCTT+TGG 0.312925 5:+15345165 None:intergenic
TGCATGGTCCTTGAGTTTCT+TGG 0.316560 5:-15345751 MsG0580025209.01.T01:CDS
TAACCTTGTCCACCACCTTT+GGG 0.320820 5:+15345166 None:intergenic
TTTGAGAATCACCAATGAAA+TGG 0.326560 5:+15347393 None:intergenic
CCTCAGTCCGTTCTAAAGTT+GGG 0.329112 5:+15345524 None:intergenic
ATGTCTTGTTCTTCTTCATC+AGG 0.333473 5:-15347285 MsG0580025209.01.T01:CDS
AGTTCAGCCAGGGGTGTTGC+AGG 0.337595 5:+15344143 None:intergenic
ACTTTCCTACCTTGATTTGA+AGG 0.337930 5:+15344050 None:intergenic
GGGGAGAGTCCGGATCTAAA+AGG 0.349666 5:+15345544 None:intergenic
TCCGGATCTAAAAGGGTCTT+TGG 0.351019 5:+15345552 None:intergenic
ATGCAATGGTGCTGCCCATT+TGG 0.353666 5:+15345769 None:intergenic
TGGGAGTGTACTCACCTTCC+GGG 0.362905 5:+15344431 None:intergenic
AAGTGCGGCCGAGTTTGTTC+AGG 0.372250 5:-15345893 MsG0580025209.01.T01:CDS
TCAAACCATCGGATTATGAT+TGG 0.386289 5:+15343940 None:intergenic
GCGTGCAGTTGCTAAAATAT+CGG 0.390478 5:-15345443 MsG0580025209.01.T01:CDS
GATTCATTTCTCATTTCATT+TGG 0.391464 5:+15344106 None:intergenic
GCTTAAAGTTATCAATCAAT+TGG 0.393123 5:+15345800 None:intergenic
ATCTCTCTAACTTTATTCAA+TGG 0.394338 5:+15345682 None:intergenic
TGCTCAGAGGAAACTTGGTT+GGG 0.402208 5:-15347169 MsG0580025209.01.T01:CDS
ATCCGATGGTTTGAATTGTT+TGG 0.411524 5:-15343931 MsG0580025209.01.T01:three_prime_UTR
GATTACTTGCATAGTGAACT+TGG 0.411710 5:-15345634 MsG0580025209.01.T01:CDS
CCCTCAGTCCGTTCTAAAGT+TGG 0.414075 5:+15345523 None:intergenic
GGGGTCAATTCTCCACCGTT+TGG 0.419364 5:-15347149 MsG0580025209.01.T01:CDS
TTTAAGCACACAGGTCCAAA+TGG 0.425606 5:-15345784 MsG0580025209.01.T01:CDS
GACTGCAAGGAATCCAAATC+CGG 0.427295 5:-15343889 MsG0580025209.01.T01:three_prime_UTR
TGATTCATTGCAGTTCAGCC+AGG 0.429978 5:+15344132 None:intergenic
TTCTAAAGTTGGGGAGAGTC+CGG 0.433511 5:+15345534 None:intergenic
GGATCATCTTGCCTTGATGA+TGG 0.437810 5:-15344472 MsG0580025209.01.T01:CDS
TTACAAGTCTTATTGAGAAA+AGG 0.437935 5:-15345483 MsG0580025209.01.T01:CDS
TGTGGATTGCAGATTGCAAT+TGG 0.442014 5:-15344358 MsG0580025209.01.T01:intron
TTGAGAATCACCAATGAAAT+GGG 0.454404 5:+15347394 None:intergenic
AAATGAATCTACTGTGGAAA+AGG 0.456827 5:-15344092 MsG0580025209.01.T01:CDS
TATATTGCTCAGAGGAAACT+TGG 0.462401 5:-15347174 MsG0580025209.01.T01:CDS
ACAACAAACTTTGAATTCGA+TGG 0.467683 5:+15345823 None:intergenic
TTGTTCTTCTTCATCAGGAT+CGG 0.468336 5:-15347280 MsG0580025209.01.T01:CDS
CCTGAAATTATACTGAAGTC+TGG 0.479012 5:-15345265 MsG0580025209.01.T01:CDS
AATCAAACAATTTGGACCGT+TGG 0.479398 5:-15343990 MsG0580025209.01.T01:three_prime_UTR
TCAATGGAAGACCTTTGTAA+TGG 0.483257 5:+15345698 None:intergenic
CGTGCAGTTGCTAAAATATC+GGG 0.483843 5:-15345442 MsG0580025209.01.T01:CDS
GGAAGAACAGCTTCAATTGA+AGG 0.486531 5:-15345421 MsG0580025209.01.T01:CDS
CGGTCCAAATTGTTTGATTG+TGG 0.491861 5:+15343994 None:intergenic
AACTCCTCGGAAAGATGCCC+CGG 0.493756 5:-15344449 MsG0580025209.01.T01:CDS
TTGCTCAGAGGAAACTTGGT+TGG 0.496479 5:-15347170 MsG0580025209.01.T01:CDS
TTCTTTCAACCATTGCTGAT+GGG 0.501024 5:-15345849 MsG0580025209.01.T01:CDS
GATTCATTGCAGTTCAGCCA+GGG 0.507004 5:+15344133 None:intergenic
ATGCCGGTCAAAGTAATCCT+TGG 0.507357 5:+15344324 None:intergenic
GTTCTTTCAACCATTGCTGA+TGG 0.515507 5:-15345850 MsG0580025209.01.T01:CDS
TCCGAGGAGTTCCATCATCA+AGG 0.521134 5:+15344461 None:intergenic
ACAGCTTCAATTGAAGGAAG+AGG 0.522518 5:-15345415 MsG0580025209.01.T01:CDS
TGAAGGTGGAATATGTGTTA+TGG 0.522589 5:-15344028 MsG0580025209.01.T01:three_prime_UTR
ATTGCTTTCGAGCTTGCCAC+TGG 0.524146 5:-15345205 MsG0580025209.01.T01:CDS
CTCAGTCCGTTCTAAAGTTG+GGG 0.526561 5:+15345525 None:intergenic
TCTTTCAACCATTGCTGATG+GGG 0.528594 5:-15345848 MsG0580025209.01.T01:CDS
AATCCAAGGATTACTTTGAC+CGG 0.528653 5:-15344327 MsG0580025209.01.T01:CDS
TATGAGCAACCTTCAAATCA+AGG 0.531115 5:-15344059 MsG0580025209.01.T01:CDS
AACCAAACAATTCAAACCAT+CGG 0.532824 5:+15343929 None:intergenic
AGCAATACCTGCAACACCCC+TGG 0.537392 5:-15344150 MsG0580025209.01.T01:CDS
CAACAAACTTTGAATTCGAT+GGG 0.538001 5:+15345824 None:intergenic
TGCAGGTATTGCTGTGCAGT+TGG 0.541729 5:+15344160 None:intergenic
GGGAGAGTCCGGATCTAAAA+GGG 0.543496 5:+15345545 None:intergenic
TTATTTACACCCAAAGGTGG+TGG 0.545111 5:-15345175 MsG0580025209.01.T01:CDS
CTGACTTTGTTTCAATCCAA+CGG 0.545231 5:+15343974 None:intergenic
GGATTGCAGATTGCAATTGG+TGG 0.549667 5:-15344355 MsG0580025209.01.T01:intron
ATGAGGGATTTGAGTCCTAT+CGG 0.552054 5:-15347248 MsG0580025209.01.T01:CDS
TTAAGCACACAGGTCCAAAT+GGG 0.558245 5:-15345783 MsG0580025209.01.T01:CDS
TCAATCAGCAATTTGTCAAG+TGG 0.561218 5:+15344265 None:intergenic
CTGATCAATTCGCGGGTGGG+AGG 0.561858 5:-15347197 MsG0580025209.01.T01:CDS
GATATGTTATTTACACCCAA+AGG 0.565138 5:-15345181 MsG0580025209.01.T01:CDS
CAAATGCGGGTCTGACTGCA+AGG 0.565908 5:-15343902 MsG0580025209.01.T01:three_prime_UTR
ACACCCAAAGGTGGTGGACA+AGG 0.567008 5:-15345169 MsG0580025209.01.T01:CDS
TAGAGTCGCTGATCAATTCG+CGG 0.570049 5:-15347205 MsG0580025209.01.T01:CDS
CCTTCCGGGGCATCTTTCCG+AGG 0.576947 5:+15344445 None:intergenic
CGATGGGTCCCCATCAGCAA+TGG 0.578011 5:+15345840 None:intergenic
TGTTTGGTTGAAGCAAATGC+GGG 0.578617 5:-15343915 MsG0580025209.01.T01:three_prime_UTR
TTCTTCTTCATCAGGATCGG+AGG 0.578889 5:-15347277 MsG0580025209.01.T01:CDS
ATTCCTTCTCTGTAGACATG+TGG 0.579312 5:-15345240 MsG0580025209.01.T01:CDS
ACAAGGTTATAGCGAGGATG+AGG 0.579359 5:-15345152 MsG0580025209.01.T01:intron
AAGGATTACTTTGACCGGCA+TGG 0.580864 5:-15344322 MsG0580025209.01.T01:CDS
ACTGTGGAAAAGGTTAATGT+TGG 0.582824 5:-15344082 MsG0580025209.01.T01:CDS
ATCAAATACAGCCATTACAA+AGG 0.586492 5:-15345709 MsG0580025209.01.T01:CDS
ATTCATTGCAGTTCAGCCAG+GGG 0.586651 5:+15344134 None:intergenic
ACTGCAAGGAATCCAAATCC+GGG 0.588810 5:-15343888 MsG0580025209.01.T01:three_prime_UTR
AGGATCGGAGGAAGATGATG+AGG 0.592202 5:-15347265 MsG0580025209.01.T01:CDS
GATCTAAAAGGGTCTTTGGA+AGG 0.592260 5:+15345556 None:intergenic
GTCGCTGATCAATTCGCGGG+TGG 0.594980 5:-15347201 MsG0580025209.01.T01:CDS
AAGGGCAGCCTGAACAAACT+CGG 0.595404 5:+15345885 None:intergenic
TCAAGGTAGGAAAGTGAAGG+TGG 0.595728 5:-15344042 MsG0580025209.01.T01:exon
TCGCTGATCAATTCGCGGGT+GGG 0.599945 5:-15347200 MsG0580025209.01.T01:CDS
ATTGATAACTTTAAGCACAC+AGG 0.601668 5:-15345793 MsG0580025209.01.T01:CDS
TGTAAATAACATATCTCCAG+TGG 0.603326 5:+15345189 None:intergenic
CGGACTGAGGGAAACACAAA+CGG 0.603582 5:-15345511 MsG0580025209.01.T01:CDS
AAATCAAGGTAGGAAAGTGA+AGG 0.604919 5:-15344045 MsG0580025209.01.T01:exon
GCTCAGAGGAAACTTGGTTG+GGG 0.605080 5:-15347168 MsG0580025209.01.T01:CDS
AACAAAACACAAGACCCAGA+TGG 0.607452 5:+15347338 None:intergenic
AATTGGTGGAGCTCAATCCA+AGG 0.608972 5:-15344341 MsG0580025209.01.T01:CDS
ATGGTATCCACCTTTCCGAT+AGG 0.609356 5:+15347233 None:intergenic
AGACCACATGTCTACAGAGA+AGG 0.609410 5:+15345237 None:intergenic
AAATGGGCAGCACCATTGCA+TGG 0.610699 5:-15345767 MsG0580025209.01.T01:CDS
AGAGTCGCTGATCAATTCGC+GGG 0.611441 5:-15347204 MsG0580025209.01.T01:CDS
TTTCAGGCTTCAAGTCTGTG+TGG 0.614462 5:+15345605 None:intergenic
TTTGAGTCCTATCGGAAAGG+TGG 0.621569 5:-15347240 MsG0580025209.01.T01:CDS
AAAGAACGTTGATCTCGTGA+AGG 0.622147 5:+15345866 None:intergenic
GGGAGTGTACTCACCTTCCG+GGG 0.625406 5:+15344432 None:intergenic
TTGTTTGGTTGAAGCAAATG+CGG 0.628204 5:-15343916 MsG0580025209.01.T01:three_prime_UTR
AAGAACGTTGATCTCGTGAA+GGG 0.630667 5:+15345867 None:intergenic
ACTTTGACTATGTCAAAACC+CGG 0.631879 5:+15343870 None:intergenic
AGTATCATAAGCAAGCCAAA+CGG 0.632450 5:+15347134 None:intergenic
GAAACTCAAGGACCATGCAA+TGG 0.636117 5:+15345755 None:intergenic
CCCAACTTTAGAACGGACTG+AGG 0.637641 5:-15345524 MsG0580025209.01.T01:CDS
AGCAACCTTCAAATCAAGGT+AGG 0.638879 5:-15344055 MsG0580025209.01.T01:CDS
GACTCTCCCCAACTTTAGAA+CGG 0.639593 5:-15345531 MsG0580025209.01.T01:CDS
ATGTTATTTACACCCAAAGG+TGG 0.642360 5:-15345178 MsG0580025209.01.T01:CDS
ATCATAAGCAAGCCAAACGG+TGG 0.646324 5:+15347137 None:intergenic
GTCATCCAATCATAATCCGA+TGG 0.646397 5:-15343945 MsG0580025209.01.T01:three_prime_UTR
CCTCGGAAAGATGCCCCGGA+AGG 0.647925 5:-15344445 MsG0580025209.01.T01:intron
GGATTTGAGTCCTATCGGAA+AGG 0.650525 5:-15347243 MsG0580025209.01.T01:CDS
AGCTATCACCAAGAAACTCA+AGG 0.651636 5:+15345743 None:intergenic
GGATCGGAGGAAGATGATGA+GGG 0.654053 5:-15347264 MsG0580025209.01.T01:CDS
GCCTTGATGATGGAACTCCT+CGG 0.654637 5:-15344462 MsG0580025209.01.T01:CDS
GATCAGCGACTCTAACAGCA+TGG 0.659062 5:+15347214 None:intergenic
GTGGAATATGTGTTATGGCA+TGG 0.659386 5:-15344023 MsG0580025209.01.T01:three_prime_UTR
AAGTCTAGTAGAAATACCGA+CGG 0.660766 5:-15345382 MsG0580025209.01.T01:CDS
AGTCTAGTAGAAATACCGAC+GGG 0.662510 5:-15345381 MsG0580025209.01.T01:CDS
GCATCTCATATCAATCCCGT+CGG 0.664207 5:+15345366 None:intergenic
TTAAGAAGAACATACAGAGG+TGG 0.667158 5:+15347110 None:intergenic
AATGAGAAATGAATCTACTG+TGG 0.670154 5:-15344098 MsG0580025209.01.T01:CDS
CCAACTTTAGAACGGACTGA+GGG 0.670163 5:-15345523 MsG0580025209.01.T01:CDS
ACTGAGGGAAACACAAACGG+TGG 0.700333 5:-15345508 MsG0580025209.01.T01:CDS
TGGTGGACAAGGTTATAGCG+AGG 0.709203 5:-15345158 MsG0580025209.01.T01:CDS
TCTCAAAATCCAGAAAAGTG+CGG 0.715435 5:-15345908 MsG0580025209.01.T01:CDS
GTGGGAGGTATATTGCTCAG+AGG 0.720598 5:-15347182 MsG0580025209.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCAAAAATATTCTATAT+GGG - Chr5:15345120-15345139 MsG0580025209.01.T01:intron 10.0%
!!! CAAATAATATAAGTTTTTAT+AGG + Chr5:15346646-15346665 None:intergenic 10.0%
!!! TTAATTTTAAAAATTATCAC+TGG + Chr5:15345189-15345208 None:intergenic 10.0%
!! AAATTAGAAAAAGATATTAG+TGG + Chr5:15345222-15345241 None:intergenic 15.0%
!! GATTTCAAAAATATTCTATA+TGG - Chr5:15345119-15345138 MsG0580025209.01.T01:intron 15.0%
!! TATCATGAAAAACAAAAAAT+AGG + Chr5:15344110-15344129 None:intergenic 15.0%
!!! AAACTTATATTATTTGTTAC+TGG - Chr5:15346650-15346669 MsG0580025209.01.T01:intron 15.0%
!!! ATTTGTAAATACATTTTGAT+TGG - Chr5:15345514-15345533 MsG0580025209.01.T01:CDS 15.0%
!!! GTATTTTTAATTTTTTGTGT+AGG + Chr5:15343762-15343781 None:intergenic 15.0%
!!! TTTTTTTGTTATTGAATGAA+TGG - Chr5:15344254-15344273 MsG0580025209.01.T01:CDS 15.0%
!! AAAAAAAAGAGAGAAAAAAG+TGG - Chr5:15343680-15343699 MsG0580025209.01.T01:three_prime_UTR 20.0%
!! ATTAAAAATACCCATTTCAT+TGG - Chr5:15343771-15343790 MsG0580025209.01.T01:three_prime_UTR 20.0%
!! CATGATCATAAAAAGAATTA+AGG + Chr5:15346562-15346581 None:intergenic 20.0%
!!! CATTTCTAAAATAAATACTG+TGG - Chr5:15346781-15346800 MsG0580025209.01.T01:intron 20.0%
!!! TAAATACATTTTGATTGGTT+TGG - Chr5:15345519-15345538 MsG0580025209.01.T01:CDS 20.0%
! AATCTGATCAAAGAAAAAAG+TGG - Chr5:15343864-15343883 MsG0580025209.01.T01:three_prime_UTR 25.0%
! AATTGGAATAGCTGAAAATT+GGG - Chr5:15344355-15344374 MsG0580025209.01.T01:intron 25.0%
! ACGTTAGAAACAAATACATT+TGG - Chr5:15344669-15344688 MsG0580025209.01.T01:intron 25.0%
! ATCTCTCTAACTTTATTCAA+TGG + Chr5:15345496-15345515 None:intergenic 25.0%
! ATCTGATCAAAGAAAAAAGT+GGG - Chr5:15343865-15343884 MsG0580025209.01.T01:three_prime_UTR 25.0%
! ATTCCAATTCCAACAAAAAA+AGG + Chr5:15344344-15344363 None:intergenic 25.0%
! ATTTGGTAGACATATTAGAA+TGG - Chr5:15344686-15344705 MsG0580025209.01.T01:intron 25.0%
! CATAAAAACTCTATCGTTTA+GGG + Chr5:15346444-15346463 None:intergenic 25.0%
! CCAACAAAAAAAGGAATTAT+CGG + Chr5:15344335-15344354 None:intergenic 25.0%
! CTTAAATTGTTGTATGCAAA+AGG - Chr5:15346521-15346540 MsG0580025209.01.T01:intron 25.0%
! CTTTATGACATTCTTTCTAT+TGG - Chr5:15347376-15347395 MsG0580025209.01.T01:five_prime_UTR 25.0%
! GAAACTTTGAATTTCATTCT+CGG + Chr5:15346475-15346494 None:intergenic 25.0%
! GACAAAAACAATGTAACATA+AGG + Chr5:15344409-15344428 None:intergenic 25.0%
! GATTCATTTCTCATTTCATT+TGG + Chr5:15347072-15347091 None:intergenic 25.0%
! GCTTAAAGTTATCAATCAAT+TGG + Chr5:15345378-15345397 None:intergenic 25.0%
! GGTTTAATATGTGAAAAAAC+TGG - Chr5:15346116-15346135 MsG0580025209.01.T01:intron 25.0%
! TAGGTTTATTAGCTCAAATT+TGG - Chr5:15344202-15344221 MsG0580025209.01.T01:CDS 25.0%
! TATTATGTTTGACCTATGTT+TGG - Chr5:15344735-15344754 MsG0580025209.01.T01:intron 25.0%
! TATTGGTGCAAATTAACAAA+CGG - Chr5:15344872-15344891 MsG0580025209.01.T01:intron 25.0%
! TCATAAAAACTCTATCGTTT+AGG + Chr5:15346445-15346464 None:intergenic 25.0%
! TTTACCACAATCAAACAATT+TGG - Chr5:15347177-15347196 MsG0580025209.01.T01:CDS 25.0%
! TTTGGTAGACATATTAGAAT+GGG - Chr5:15344687-15344706 MsG0580025209.01.T01:intron 25.0%
!! CTTTTTATGATCATGTTGAA+GGG - Chr5:15346567-15346586 MsG0580025209.01.T01:intron 25.0%
!! GAAAATAGAAGAATGTTTTC+AGG + Chr5:15345589-15345608 None:intergenic 25.0%
!! TCTTTTTATGATCATGTTGA+AGG - Chr5:15346566-15346585 MsG0580025209.01.T01:intron 25.0%
!!! AAAGTTTTGATTTTTCCATC+TGG - Chr5:15343822-15343841 MsG0580025209.01.T01:three_prime_UTR 25.0%
!!! AAGTTTTGATTTTTCCATCT+GGG - Chr5:15343823-15343842 MsG0580025209.01.T01:three_prime_UTR 25.0%
!!! ATTCCTTTTTTTGTTGGAAT+TGG - Chr5:15344338-15344357 MsG0580025209.01.T01:CDS 25.0%
!!! ATTTTTCTAGTAAACTGTTG+TGG - Chr5:15346053-15346072 MsG0580025209.01.T01:intron 25.0%
!!! GACAATTGGTTTGTTTTATT+TGG - Chr5:15344968-15344987 MsG0580025209.01.T01:intron 25.0%
!!! GATGTGAAGTATTTTGTTTT+TGG + Chr5:15343729-15343748 None:intergenic 25.0%
!!! TTACAAGTCTTATTGAGAAA+AGG - Chr5:15345692-15345711 MsG0580025209.01.T01:CDS 25.0%
!!! TTGTTTGTTATGTTTTGTGT+AGG - Chr5:15344183-15344202 MsG0580025209.01.T01:CDS 25.0%
!!! TTTGTTTTTCATGATACATG+TGG - Chr5:15344114-15344133 MsG0580025209.01.T01:CDS 25.0%
!!! TTTTTTTGCTGTCAAGATTT+AGG - Chr5:15344569-15344588 MsG0580025209.01.T01:intron 25.0%
AAACAATGTAACATAAGGTC+AGG + Chr5:15344404-15344423 None:intergenic 30.0%
AAATGAATCTACTGTGGAAA+AGG - Chr5:15347083-15347102 MsG0580025209.01.T01:intron 30.0%
AACCAAACAATTCAAACCAT+CGG + Chr5:15347249-15347268 None:intergenic 30.0%
AAGACAATTATTCTCATTCC+CGG + Chr5:15344515-15344534 None:intergenic 30.0%
AAGACTTGTGATACCATAAA+TGG - Chr5:15344609-15344628 MsG0580025209.01.T01:intron 30.0%
AATATGGAACCATCTTGATT+AGG + Chr5:15345027-15345046 None:intergenic 30.0%
AATGAGAAATGAATCTACTG+TGG - Chr5:15347077-15347096 MsG0580025209.01.T01:intron 30.0%
ACAACAAACTTTGAATTCGA+TGG + Chr5:15345355-15345374 None:intergenic 30.0%
ACATGAAGAAAAGATGAACT+TGG + Chr5:15345089-15345108 None:intergenic 30.0%
AGTTTAAGAAGAACATACAG+AGG + Chr5:15344071-15344090 None:intergenic 30.0%
ATATTAAAACAACAGTCTCC+TGG - Chr5:15345042-15345061 MsG0580025209.01.T01:intron 30.0%
ATCAAATACAGCCATTACAA+AGG - Chr5:15345466-15345485 MsG0580025209.01.T01:CDS 30.0%
ATGGGATGAAACATAATACT+AGG - Chr5:15344705-15344724 MsG0580025209.01.T01:intron 30.0%
ATTGAAGTGTATCCAAACAT+AGG + Chr5:15344750-15344769 None:intergenic 30.0%
ATTGGTGCAAATTAACAAAC+GGG - Chr5:15344873-15344892 MsG0580025209.01.T01:intron 30.0%
ATTTATGGTATCACAAGTCT+TGG + Chr5:15344610-15344629 None:intergenic 30.0%
CAACAAACTTTGAATTCGAT+GGG + Chr5:15345354-15345373 None:intergenic 30.0%
CATGTACCATTTATGTTTGT+TGG - Chr5:15344484-15344503 MsG0580025209.01.T01:intron 30.0%
CTTCATTAACCTAATCAAGA+TGG - Chr5:15345015-15345034 MsG0580025209.01.T01:intron 30.0%
GAATTGGAATAGCTGAAAAT+TGG - Chr5:15344354-15344373 MsG0580025209.01.T01:intron 30.0%
GGATATTAATCTTAGCAACA+GGG + Chr5:15345068-15345087 None:intergenic 30.0%
GTACTTCCAACAAACATAAA+TGG + Chr5:15344493-15344512 None:intergenic 30.0%
TACAACTTGTAGATTTGAAG+TGG - Chr5:15344810-15344829 MsG0580025209.01.T01:intron 30.0%
TAGGTTCTATAGAAATAGCA+TGG + Chr5:15346627-15346646 None:intergenic 30.0%
TGAGAATAATTGTCTTTCTC+AGG - Chr5:15344519-15344538 MsG0580025209.01.T01:intron 30.0%
TGGATATTAATCTTAGCAAC+AGG + Chr5:15345069-15345088 None:intergenic 30.0%
TGGGATGAAACATAATACTA+GGG - Chr5:15344706-15344725 MsG0580025209.01.T01:intron 30.0%
TGTAAATAACATATCTCCAG+TGG + Chr5:15345989-15346008 None:intergenic 30.0%
TTGAGAATCACCAATGAAAT+GGG + Chr5:15343784-15343803 None:intergenic 30.0%
TTGTAGCTTCTCAAAAATCA+CGG + Chr5:15344795-15344814 None:intergenic 30.0%
TTTGAGAATCACCAATGAAA+TGG + Chr5:15343785-15343804 None:intergenic 30.0%
! ATTGATAACTTTAAGCACAC+AGG - Chr5:15345382-15345401 MsG0580025209.01.T01:CDS 30.0%
! CACGTGTCTCTTTTTATTAA+TGG + Chr5:15346161-15346180 None:intergenic 30.0%
! GATATGTTATTTACACCCAA+AGG - Chr5:15345994-15346013 MsG0580025209.01.T01:intron 30.0%
! TTTATGTTTGTTGGAAGTAC+CGG - Chr5:15344493-15344512 MsG0580025209.01.T01:intron 30.0%
! TTTTTGTGTAGGAAATTGCT+TGG + Chr5:15343751-15343770 None:intergenic 30.0%
!! AAGATTTAGGAGCCATTTTA+TGG - Chr5:15344582-15344601 MsG0580025209.01.T01:intron 30.0%
!!! AGGAGACTGTTGTTTTAATA+TGG + Chr5:15345043-15345062 None:intergenic 30.0%
!!! CCGATAATTCCTTTTTTTGT+TGG - Chr5:15344332-15344351 MsG0580025209.01.T01:CDS 30.0%
AAATCAAGGTAGGAAAGTGA+AGG - Chr5:15347130-15347149 MsG0580025209.01.T01:CDS 35.0%
AAATGAAACATGCTGACAGT+GGG + Chr5:15346766-15346785 None:intergenic 35.0%
AAGTCTAGTAGAAATACCGA+CGG - Chr5:15345793-15345812 MsG0580025209.01.T01:CDS 35.0%
AATCAAACAATTTGGACCGT+TGG - Chr5:15347185-15347204 MsG0580025209.01.T01:CDS 35.0%
AATCCAAGGATTACTTTGAC+CGG - Chr5:15346848-15346867 MsG0580025209.01.T01:intron 35.0%
ACTGTGGAAAAGGTTAATGT+TGG - Chr5:15347093-15347112 MsG0580025209.01.T01:intron 35.0%
ACTTTGACTATGTCAAAACC+CGG + Chr5:15347308-15347327 None:intergenic 35.0%
AGAGAACAAAACAGGACAAT+TGG - Chr5:15344954-15344973 MsG0580025209.01.T01:intron 35.0%
AGTATCATAAGCAAGCCAAA+CGG + Chr5:15344044-15344063 None:intergenic 35.0%
ATCCGATGGTTTGAATTGTT+TGG - Chr5:15347244-15347263 MsG0580025209.01.T01:CDS 35.0%
CAAGTCTTGGATCCATAAAA+TGG + Chr5:15344597-15344616 None:intergenic 35.0%
CCAGACTTCAGTATAATTTC+AGG + Chr5:15345913-15345932 None:intergenic 35.0%
CCTGAAATTATACTGAAGTC+TGG - Chr5:15345910-15345929 MsG0580025209.01.T01:CDS 35.0%
GAATAGCTGAAAATTGGGAA+TGG - Chr5:15344360-15344379 MsG0580025209.01.T01:intron 35.0%
GATGAAACATAATACTAGGG+GGG - Chr5:15344709-15344728 MsG0580025209.01.T01:intron 35.0%
GATTACTTGCATAGTGAACT+TGG - Chr5:15345541-15345560 MsG0580025209.01.T01:CDS 35.0%
GGATGAAACATAATACTAGG+GGG - Chr5:15344708-15344727 MsG0580025209.01.T01:intron 35.0%
GGGATGAAACATAATACTAG+GGG - Chr5:15344707-15344726 MsG0580025209.01.T01:intron 35.0%
GTGATCTAAAAAGGATTCGT+AGG - Chr5:15346875-15346894 MsG0580025209.01.T01:intron 35.0%
TAAATGGCACGAGTTAATGT+AGG - Chr5:15344625-15344644 MsG0580025209.01.T01:intron 35.0%
TATATTGCTCAGAGGAAACT+TGG - Chr5:15344001-15344020 MsG0580025209.01.T01:three_prime_UTR 35.0%
TATGAGCAACCTTCAAATCA+AGG - Chr5:15347116-15347135 MsG0580025209.01.T01:intron 35.0%
TCAAACCATCGGATTATGAT+TGG + Chr5:15347238-15347257 None:intergenic 35.0%
TCAATCAGCAATTTGTCAAG+TGG + Chr5:15346913-15346932 None:intergenic 35.0%
TCAATGGAAGACCTTTGTAA+TGG + Chr5:15345480-15345499 None:intergenic 35.0%
TCTCAAAATCCAGAAAAGTG+CGG - Chr5:15345267-15345286 MsG0580025209.01.T01:CDS 35.0%
TGAAGGTGGAATATGTGTTA+TGG - Chr5:15347147-15347166 MsG0580025209.01.T01:CDS 35.0%
TGATCATGTTGAAGGGAAAA+TGG - Chr5:15346574-15346593 MsG0580025209.01.T01:intron 35.0%
TTAAGAAGAACATACAGAGG+TGG + Chr5:15344068-15344087 None:intergenic 35.0%
TTCTTTCAACCATTGCTGAT+GGG - Chr5:15345326-15345345 MsG0580025209.01.T01:CDS 35.0%
TTGTTCTTCTTCATCAGGAT+CGG - Chr5:15343895-15343914 MsG0580025209.01.T01:three_prime_UTR 35.0%
TTGTTTGGTTGAAGCAAATG+CGG - Chr5:15347259-15347278 MsG0580025209.01.T01:CDS 35.0%
! ACTTTCCTACCTTGATTTGA+AGG + Chr5:15347128-15347147 None:intergenic 35.0%
! ATGTCTTGTTCTTCTTCATC+AGG - Chr5:15343890-15343909 MsG0580025209.01.T01:three_prime_UTR 35.0%
! ATGTTATTTACACCCAAAGG+TGG - Chr5:15345997-15346016 MsG0580025209.01.T01:intron 35.0%
! ATTCTTTTATAGCCCATGTG+AGG - Chr5:15346371-15346390 MsG0580025209.01.T01:intron 35.0%
! CTGACTTTGTTTCAATCCAA+CGG + Chr5:15347204-15347223 None:intergenic 35.0%
! GAGTGAAAGTGTAAAACAAG+TGG - Chr5:15344901-15344920 MsG0580025209.01.T01:intron 35.0%
! TATGGTTAACGAGTTTTCAG+AGG - Chr5:15346095-15346114 MsG0580025209.01.T01:intron 35.0%
! TTCTTTTATAGCCCATGTGA+GGG - Chr5:15346372-15346391 MsG0580025209.01.T01:intron 35.0%
!! ACATTAACTCGTGCCATTTA+TGG + Chr5:15344625-15344644 None:intergenic 35.0%
!! TGAGGGAGGTACTAAATAAA+GGG - Chr5:15346389-15346408 MsG0580025209.01.T01:intron 35.0%
!! TGATAGTGTGAAAAGTGTCA+GGG - Chr5:15346307-15346326 MsG0580025209.01.T01:intron 35.0%
!! TTATGTTTGTTGGAAGTACC+GGG - Chr5:15344494-15344513 MsG0580025209.01.T01:intron 35.0%
!! TTGATAGTGTGAAAAGTGTC+AGG - Chr5:15346306-15346325 MsG0580025209.01.T01:intron 35.0%
!! TTGTCCTGTTTTGTTCTCTT+TGG + Chr5:15344953-15344972 None:intergenic 35.0%
!!! AGATGCAAGATTGTCGATTT+TGG - Chr5:15345826-15345845 MsG0580025209.01.T01:CDS 35.0%
AAAGAACGTTGATCTCGTGA+AGG + Chr5:15345312-15345331 None:intergenic 40.0%
AACAAAACACAAGACCCAGA+TGG + Chr5:15343840-15343859 None:intergenic 40.0%
AAGAACGTTGATCTCGTGAA+GGG + Chr5:15345311-15345330 None:intergenic 40.0%
ACAGCTTCAATTGAAGGAAG+AGG - Chr5:15345760-15345779 MsG0580025209.01.T01:CDS 40.0%
ACTATGTCAAAACCCGGATT+TGG + Chr5:15347302-15347321 None:intergenic 40.0%
AGCAACCTTCAAATCAAGGT+AGG - Chr5:15347120-15347139 MsG0580025209.01.T01:intron 40.0%
AGCTATCACCAAGAAACTCA+AGG + Chr5:15345435-15345454 None:intergenic 40.0%
AGTCTAGTAGAAATACCGAC+GGG - Chr5:15345794-15345813 MsG0580025209.01.T01:CDS 40.0%
ATGAGGGATTTGAGTCCTAT+CGG - Chr5:15343927-15343946 MsG0580025209.01.T01:three_prime_UTR 40.0%
ATGATCCTGAAATCAGCACA+AGG + Chr5:15346690-15346709 None:intergenic 40.0%
ATTCCTTCTCTGTAGACATG+TGG - Chr5:15345935-15345954 MsG0580025209.01.T01:intron 40.0%
ATTTAGTACCTCCCTCACAT+GGG + Chr5:15346386-15346405 None:intergenic 40.0%
CACAGAAACAAACAGGCTAT+TGG - Chr5:15344855-15344874 MsG0580025209.01.T01:intron 40.0%
CGAACCAAAGAGAACAAAAC+AGG - Chr5:15344946-15344965 MsG0580025209.01.T01:intron 40.0%
CGGTCCAAATTGTTTGATTG+TGG + Chr5:15347184-15347203 None:intergenic 40.0%
CGTGCAGTTGCTAAAATATC+GGG - Chr5:15345733-15345752 MsG0580025209.01.T01:CDS 40.0%
GAAATGAAACATGCTGACAG+TGG + Chr5:15346767-15346786 None:intergenic 40.0%
GATCTAAAAGGGTCTTTGGA+AGG + Chr5:15345622-15345641 None:intergenic 40.0%
GCGTGCAGTTGCTAAAATAT+CGG - Chr5:15345732-15345751 MsG0580025209.01.T01:CDS 40.0%
GGAAGAACAGCTTCAATTGA+AGG - Chr5:15345754-15345773 MsG0580025209.01.T01:CDS 40.0%
GTCATCCAATCATAATCCGA+TGG - Chr5:15347230-15347249 MsG0580025209.01.T01:CDS 40.0%
GTGGAATATGTGTTATGGCA+TGG - Chr5:15347152-15347171 MsG0580025209.01.T01:CDS 40.0%
GTTCTTTCAACCATTGCTGA+TGG - Chr5:15345325-15345344 MsG0580025209.01.T01:CDS 40.0%
TATTTAGTACCTCCCTCACA+TGG + Chr5:15346387-15346406 None:intergenic 40.0%
TCTGGCGCAAAATCAAAAAG+TGG + Chr5:15346988-15347007 None:intergenic 40.0%
TCTTTCAACCATTGCTGATG+GGG - Chr5:15345327-15345346 MsG0580025209.01.T01:CDS 40.0%
TGTGGCATATCTAATGCTTG+TGG - Chr5:15346799-15346818 MsG0580025209.01.T01:intron 40.0%
TGTTTGGTTGAAGCAAATGC+GGG - Chr5:15347260-15347279 MsG0580025209.01.T01:CDS 40.0%
TTAAGCACACAGGTCCAAAT+GGG - Chr5:15345392-15345411 MsG0580025209.01.T01:CDS 40.0%
TTATTTACACCCAAAGGTGG+TGG - Chr5:15346000-15346019 MsG0580025209.01.T01:intron 40.0%
TTTAAGCACACAGGTCCAAA+TGG - Chr5:15345391-15345410 MsG0580025209.01.T01:CDS 40.0%
! CTTTGGTTCGATATTCTCAG+TGG + Chr5:15344936-15344955 None:intergenic 40.0%
! TCCAAAGACCCTTTTAGATC+CGG - Chr5:15345622-15345641 MsG0580025209.01.T01:CDS 40.0%
! TCCTTTTTAGATCACCATGC+CGG + Chr5:15346870-15346889 None:intergenic 40.0%
! TGTGGATTGCAGATTGCAAT+TGG - Chr5:15346817-15346836 MsG0580025209.01.T01:intron 40.0%
!! AATGTCCTTGTGCTGATTTC+AGG - Chr5:15346682-15346701 MsG0580025209.01.T01:intron 40.0%
!! ATCTGGGTCTTGTGTTTTGT+TGG - Chr5:15343839-15343858 MsG0580025209.01.T01:three_prime_UTR 40.0%
!! CAATAGCCTGTTTGTTTCTG+TGG + Chr5:15344857-15344876 None:intergenic 40.0%
!! CGATTTTGGAAATGCGTGTT+GGG - Chr5:15345840-15345859 MsG0580025209.01.T01:CDS 40.0%
!! GTCAGGTTTTGTGAATTGTG+AGG + Chr5:15344387-15344406 None:intergenic 40.0%
!! GTGAGGGAGGTACTAAATAA+AGG - Chr5:15346388-15346407 MsG0580025209.01.T01:intron 40.0%
!! TCGATTTTGGAAATGCGTGT+TGG - Chr5:15345839-15345858 MsG0580025209.01.T01:CDS 40.0%
AAGGATTACTTTGACCGGCA+TGG - Chr5:15346853-15346872 MsG0580025209.01.T01:intron 45.0%
AATTGGTGGAGCTCAATCCA+AGG - Chr5:15346834-15346853 MsG0580025209.01.T01:intron 45.0%
ACAAGGTTATAGCGAGGATG+AGG - Chr5:15346023-15346042 MsG0580025209.01.T01:intron 45.0%
ACCGGCATGGTGATCTAAAA+AGG - Chr5:15346866-15346885 MsG0580025209.01.T01:intron 45.0%
ACTGCAAGGAATCCAAATCC+GGG - Chr5:15347287-15347306 MsG0580025209.01.T01:CDS 45.0%
AGACCACATGTCTACAGAGA+AGG + Chr5:15345941-15345960 None:intergenic 45.0%
ATAACCTTGTCCACCACCTT+TGG + Chr5:15346013-15346032 None:intergenic 45.0%
ATCATAAGCAAGCCAAACGG+TGG + Chr5:15344041-15344060 None:intergenic 45.0%
ATGCCGGTCAAAGTAATCCT+TGG + Chr5:15346854-15346873 None:intergenic 45.0%
ATGGTATCCACCTTTCCGAT+AGG + Chr5:15343945-15343964 None:intergenic 45.0%
ATTCATTGCAGTTCAGCCAG+GGG + Chr5:15347044-15347063 None:intergenic 45.0%
GAAACTCAAGGACCATGCAA+TGG + Chr5:15345423-15345442 None:intergenic 45.0%
GACTGCAAGGAATCCAAATC+CGG - Chr5:15347286-15347305 MsG0580025209.01.T01:CDS 45.0%
GATTCATTGCAGTTCAGCCA+GGG + Chr5:15347045-15347064 None:intergenic 45.0%
GCATCTCATATCAATCCCGT+CGG + Chr5:15345812-15345831 None:intergenic 45.0%
GGATCATCTTGCCTTGATGA+TGG - Chr5:15346703-15346722 MsG0580025209.01.T01:intron 45.0%
GGATTGCAGATTGCAATTGG+TGG - Chr5:15346820-15346839 MsG0580025209.01.T01:intron 45.0%
GGATTTGAGTCCTATCGGAA+AGG - Chr5:15343932-15343951 MsG0580025209.01.T01:three_prime_UTR 45.0%
TAACCTTGTCCACCACCTTT+GGG + Chr5:15346012-15346031 None:intergenic 45.0%
TAGAGTCGCTGATCAATTCG+CGG - Chr5:15343970-15343989 MsG0580025209.01.T01:three_prime_UTR 45.0%
TCAAGGTAGGAAAGTGAAGG+TGG - Chr5:15347133-15347152 MsG0580025209.01.T01:CDS 45.0%
TCCGGATCTAAAAGGGTCTT+TGG + Chr5:15345626-15345645 None:intergenic 45.0%
TGATTCATTGCAGTTCAGCC+AGG + Chr5:15347046-15347065 None:intergenic 45.0%
TGCATGGTCCTTGAGTTTCT+TGG - Chr5:15345424-15345443 MsG0580025209.01.T01:CDS 45.0%
TGCTCAGAGGAAACTTGGTT+GGG - Chr5:15344006-15344025 MsG0580025209.01.T01:three_prime_UTR 45.0%
TTAATCTTAGCAACAGGGCC+AGG + Chr5:15345063-15345082 None:intergenic 45.0%
TTCTTCTTCATCAGGATCGG+AGG - Chr5:15343898-15343917 MsG0580025209.01.T01:three_prime_UTR 45.0%
TTGCTCAGAGGAAACTTGGT+TGG - Chr5:15344005-15344024 MsG0580025209.01.T01:three_prime_UTR 45.0%
TTTCAGGCTTCAAGTCTGTG+TGG + Chr5:15345573-15345592 None:intergenic 45.0%
TTTGAGTCCTATCGGAAAGG+TGG - Chr5:15343935-15343954 MsG0580025209.01.T01:three_prime_UTR 45.0%
! GACTCTCCCCAACTTTAGAA+CGG - Chr5:15345644-15345663 MsG0580025209.01.T01:CDS 45.0%
! TTTTATAGCCCATGTGAGGG+AGG - Chr5:15346375-15346394 MsG0580025209.01.T01:intron 45.0%
!! AGCCTGTTTGTTTCTGTGGT+GGG + Chr5:15344853-15344872 None:intergenic 45.0%
!! CCAACTTTAGAACGGACTGA+GGG - Chr5:15345652-15345671 MsG0580025209.01.T01:CDS 45.0%
!! CCTCAGTCCGTTCTAAAGTT+GGG + Chr5:15345654-15345673 None:intergenic 45.0%
!! CTCAGTCCGTTCTAAAGTTG+GGG + Chr5:15345653-15345672 None:intergenic 45.0%
!! TAGCCTGTTTGTTTCTGTGG+TGG + Chr5:15344854-15344873 None:intergenic 45.0%
!! TTCTAAAGTTGGGGAGAGTC+CGG + Chr5:15345644-15345663 None:intergenic 45.0%
!!! TGTGCAGTTGGTCGTTTTTC+TGG + Chr5:15347006-15347025 None:intergenic 45.0%
!!! TTAAATTTGATTTAATAATA+TGG - Chr5:15346077-15346096 MsG0580025209.01.T01:intron 5.0%
AAATCACGGCCAACTTGCGT+TGG + Chr5:15344781-15344800 None:intergenic 50.0%
AAATGGGCAGCACCATTGCA+TGG - Chr5:15345408-15345427 MsG0580025209.01.T01:CDS 50.0%
AAGGGCAGCCTGAACAAACT+CGG + Chr5:15345293-15345312 None:intergenic 50.0%
AATCACGGCCAACTTGCGTT+GGG + Chr5:15344780-15344799 None:intergenic 50.0%
ACTGAGGGAAACACAAACGG+TGG - Chr5:15345667-15345686 MsG0580025209.01.T01:CDS 50.0%
AGAGTCGCTGATCAATTCGC+GGG - Chr5:15343971-15343990 MsG0580025209.01.T01:three_prime_UTR 50.0%
AGGATCGGAGGAAGATGATG+AGG - Chr5:15343910-15343929 MsG0580025209.01.T01:three_prime_UTR 50.0%
ATTGCTTTCGAGCTTGCCAC+TGG - Chr5:15345970-15345989 MsG0580025209.01.T01:intron 50.0%
CGGACTGAGGGAAACACAAA+CGG - Chr5:15345664-15345683 MsG0580025209.01.T01:CDS 50.0%
CTCCCACCACAGAAACAAAC+AGG - Chr5:15344848-15344867 MsG0580025209.01.T01:intron 50.0%
GATCAGCGACTCTAACAGCA+TGG + Chr5:15343964-15343983 None:intergenic 50.0%
GCTCAGAGGAAACTTGGTTG+GGG - Chr5:15344007-15344026 MsG0580025209.01.T01:three_prime_UTR 50.0%
GGATCGGAGGAAGATGATGA+GGG - Chr5:15343911-15343930 MsG0580025209.01.T01:three_prime_UTR 50.0%
GGGAGAGTCCGGATCTAAAA+GGG + Chr5:15345633-15345652 None:intergenic 50.0%
TACCACATCCCAACGCAAGT+TGG - Chr5:15344769-15344788 MsG0580025209.01.T01:intron 50.0%
TCCGAGGAGTTCCATCATCA+AGG + Chr5:15346717-15346736 None:intergenic 50.0%
! GTGGGAGGTATATTGCTCAG+AGG - Chr5:15343993-15344012 MsG0580025209.01.T01:three_prime_UTR 50.0%
! TGCAGGTATTGCTGTGCAGT+TGG + Chr5:15347018-15347037 None:intergenic 50.0%
! TGGTGGACAAGGTTATAGCG+AGG - Chr5:15346017-15346036 MsG0580025209.01.T01:intron 50.0%
!! ATGCAATGGTGCTGCCCATT+TGG + Chr5:15345409-15345428 None:intergenic 50.0%
!! CCCAACTTTAGAACGGACTG+AGG - Chr5:15345651-15345670 MsG0580025209.01.T01:CDS 50.0%
!! CCCTCAGTCCGTTCTAAAGT+TGG + Chr5:15345655-15345674 None:intergenic 50.0%
!! CTGTTTGTTTCTGTGGTGGG+AGG + Chr5:15344850-15344869 None:intergenic 50.0%
!! GCCTTGATGATGGAACTCCT+CGG - Chr5:15346713-15346732 MsG0580025209.01.T01:intron 50.0%
AACTCCTCGGAAAGATGCCC+CGG - Chr5:15346726-15346745 MsG0580025209.01.T01:intron 55.0%
AGCAATACCTGCAACACCCC+TGG - Chr5:15347025-15347044 MsG0580025209.01.T01:intron 55.0%
CAAATGCGGGTCTGACTGCA+AGG - Chr5:15347273-15347292 MsG0580025209.01.T01:CDS 55.0%
GGGGAGAGTCCGGATCTAAA+AGG + Chr5:15345634-15345653 None:intergenic 55.0%
GGGGTCAATTCTCCACCGTT+TGG - Chr5:15344026-15344045 MsG0580025209.01.T01:three_prime_UTR 55.0%
TCGCTGATCAATTCGCGGGT+GGG - Chr5:15343975-15343994 MsG0580025209.01.T01:three_prime_UTR 55.0%
! AAGTGCGGCCGAGTTTGTTC+AGG - Chr5:15345282-15345301 MsG0580025209.01.T01:CDS 55.0%
! CAAACTCGGCCGCACTTTTC+TGG + Chr5:15345279-15345298 None:intergenic 55.0%
! GTGGGAGTGTACTCACCTTC+CGG + Chr5:15346748-15346767 None:intergenic 55.0%
! TGGGAGTGTACTCACCTTCC+GGG + Chr5:15346747-15346766 None:intergenic 55.0%
!! ACACCCAAAGGTGGTGGACA+AGG - Chr5:15346006-15346025 MsG0580025209.01.T01:intron 55.0%
CGATGGGTCCCCATCAGCAA+TGG + Chr5:15345338-15345357 None:intergenic 60.0%
CTGATCAATTCGCGGGTGGG+AGG - Chr5:15343978-15343997 MsG0580025209.01.T01:three_prime_UTR 60.0%
GGCCAACTTGCGTTGGGATG+TGG + Chr5:15344774-15344793 None:intergenic 60.0%
GTCGCTGATCAATTCGCGGG+TGG - Chr5:15343974-15343993 MsG0580025209.01.T01:three_prime_UTR 60.0%
! GGGAGTGTACTCACCTTCCG+GGG + Chr5:15346746-15346765 None:intergenic 60.0%
!! AGTTCAGCCAGGGGTGTTGC+AGG + Chr5:15347035-15347054 None:intergenic 60.0%
CCTCGGAAAGATGCCCCGGA+AGG - Chr5:15346730-15346749 MsG0580025209.01.T01:intron 65.0%
! CCTTCCGGGGCATCTTTCCG+AGG + Chr5:15346733-15346752 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 15343665 15347532 15343665 ID=MsG0580025209.01;Name=MsG0580025209.01
Chr5 mRNA 15343665 15347532 15343665 ID=MsG0580025209.01.T01;Parent=MsG0580025209.01;Name=MsG0580025209.01.T01;_AED=0.27;_eAED=0.27;_QI=225|1|1|1|1|1|4|383|446
Chr5 exon 15343665 15344368 15343665 ID=MsG0580025209.01.T01:exon:6231;Parent=MsG0580025209.01.T01
Chr5 exon 15344446 15344493 15344446 ID=MsG0580025209.01.T01:exon:6230;Parent=MsG0580025209.01.T01
Chr5 exon 15345153 15345941 15345153 ID=MsG0580025209.01.T01:exon:6229;Parent=MsG0580025209.01.T01
Chr5 exon 15347125 15347532 15347125 ID=MsG0580025209.01.T01:exon:6228;Parent=MsG0580025209.01.T01
Chr5 five_prime_UTR 15347308 15347532 15347308 ID=MsG0580025209.01.T01:five_prime_utr;Parent=MsG0580025209.01.T01
Chr5 CDS 15347125 15347307 15347125 ID=MsG0580025209.01.T01:cds;Parent=MsG0580025209.01.T01
Chr5 CDS 15345153 15345941 15345153 ID=MsG0580025209.01.T01:cds;Parent=MsG0580025209.01.T01
Chr5 CDS 15344446 15344493 15344446 ID=MsG0580025209.01.T01:cds;Parent=MsG0580025209.01.T01
Chr5 CDS 15344048 15344368 15344048 ID=MsG0580025209.01.T01:cds;Parent=MsG0580025209.01.T01
Chr5 three_prime_UTR 15343665 15344047 15343665 ID=MsG0580025209.01.T01:three_prime_utr;Parent=MsG0580025209.01.T01
Gene Sequence

>MsG0580025209.01.T01

ATGTCTTGTTCTTCTTCATCAGGATCGGAGGAAGATGATGAGGGATTTGAGTCCTATCGGAAAGGTGGATACCATGCTGTTAGAGTCGCTGATCAATTCGCGGGTGGGAGGTATATTGCTCAGAGGAAACTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCTTATGATACTACCACCTCTTCATACGTTGCTCTCAAAATCCAGAAAAGTGCGGCCGAGTTTGTTCAGGCTGCCCTTCACGAGATCAACGTTCTTTCAACCATTGCTGATGGGGACCCATCGAATTCAAAGTTTGTTGTCCAATTGATTGATAACTTTAAGCACACAGGTCCAAATGGGCAGCACCATTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTTCGTTTGATCAAATACAGCCATTACAAAGGTCTTCCATTGAATAAAGTTAGAGAGATTTGTAAATACATTTTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACACAGACTTGAAGCCTGAAAACATTCTTCTATTTTCAACTATTGATCCTTCCAAAGACCCTTTTAGATCCGGACTCTCCCCAACTTTAGAACGGACTGAGGGAAACACAAACGGTGGACTTACAAGTCTTATTGAGAAAAGGCTGAAGAGAAGAGCAAAGCGTGCAGTTGCTAAAATATCGGGAAGAACAGCTTCAATTGAAGGAAGAGGAGAAGCTGCAAAGTCTAGTAGAAATACCGACGGGATTGATATGAGATGCAAGATTGTCGATTTTGGAAATGCGTGTTGGGCTGATAACAAGTTTGCAGAAGAAATACAGACAAGACAATATAGAGCTCCTGAAATTATACTGAAGTCTGGTTATTCCTTCTCTGTAGACATGTGGTCTTTTGCTTGCATTGCTTTCGAGCTTGCCACTGGAGATATGTTATTTACACCCAAAGGTGGTGGACAAGGTTATAGCGAGGATGAGGATCATCTTGCCTTGATGATGGAACTCCTCGGAAAGATGCCCCGGAAGATTGCAATTGGTGGAGCTCAATCCAAGGATTACTTTGACCGGCATGGTGATCTAAAAAGGATTCGTAGGCTAAAATTTTGTCCACTTGACAAATTGCTGATTGATAGATATAAATTTTCAGCGAATGATGCTCAAGAGTTTTCAGAATTTCTTTTGCCACTTTTTGATTTTGCGCCAGAAAAACGACCAACTGCACAGCAATACCTGCAACACCCCTGGCTGAACTGCAATGAATCAGCGCCAAATGAAATGAGAAATGAATCTACTGTGGAAAAGGTTAATGTTGGTATGAGCAACCTTCAAATCAAGGTAGGAAAGTGA
Protein sequence

>MsG0580025209.01.T01

MSCSSSSGSEEDDEGFESYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSSYVALKIQKSAAEFVQAALHEINVLSTIADGDPSNSKFVVQLIDNFKHTGPNGQHHCMVLEFLGDSLLRLIKYSHYKGLPLNKVREICKYILIGLDYLHSELGIIHTDLKPENILLFSTIDPSKDPFRSGLSPTLERTEGNTNGGLTSLIEKRLKRRAKRAVAKISGRTASIEGRGEAAKSSRNTDGIDMRCKIVDFGNACWADNKFAEEIQTRQYRAPEIILKSGYSFSVDMWSFACIAFELATGDMLFTPKGGGQGYSEDEDHLALMMELLGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFCPLDKLLIDRYKFSANDAQEFSEFLLPLFDFAPEKRPTAQQYLQHPWLNCNESAPNEMRNESTVEKVNVGMSNLQIKVGK*