Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001316.01.T01 | KEH40796.1 | 83.896 | 385 | 41 | 2 | 1 | 364 | 11 | 395 | 0 | 642 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001316.01.T01 | Q8L3W1 | 28.025 | 314 | 164 | 10 | 2 | 259 | 32 | 339 | 4.80E-23 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001316.01.T01 | A0A072VGT1 | 83.896 | 385 | 41 | 2 | 1 | 364 | 11 | 395 | 0.0 | 642 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0180001316.01.T01 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0180001316.01 | MsG0780038248.01 | PPI |
| MsG0180001316.01 | MsG0180002477.01 | PPI |
| MsG0180001316.01 | MsG0780038244.01 | PPI |
| MsG0180001316.01 | MsG0180005884.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001316.01.T01 | MTR_1g035460 | 83.896 | 385 | 41 | 2 | 1 | 364 | 11 | 395 | 0.0 | 642 |
| MsG0180001316.01.T01 | MTR_1g108780 | 46.341 | 451 | 195 | 11 | 1 | 417 | 22 | 459 | 1.80e-119 | 355 |
| MsG0180001316.01.T01 | MTR_8g103940 | 42.444 | 450 | 205 | 12 | 3 | 417 | 66 | 496 | 1.22e-104 | 319 |
| MsG0180001316.01.T01 | MTR_7g050560 | 35.273 | 275 | 131 | 8 | 4 | 256 | 41 | 290 | 1.91e-39 | 144 |
| MsG0180001316.01.T01 | MTR_7g050590 | 33.916 | 286 | 137 | 9 | 4 | 256 | 14 | 280 | 5.90e-39 | 142 |
| MsG0180001316.01.T01 | MTR_3g098790 | 35.379 | 277 | 129 | 9 | 8 | 256 | 45 | 299 | 1.21e-38 | 142 |
| MsG0180001316.01.T01 | MTR_3g061350 | 32.819 | 259 | 155 | 8 | 4 | 255 | 38 | 284 | 8.71e-37 | 136 |
| MsG0180001316.01.T01 | MTR_3g061350 | 29.889 | 271 | 154 | 9 | 177 | 415 | 18 | 284 | 1.06e-22 | 97.4 |
| MsG0180001316.01.T01 | MTR_7g050720 | 32.509 | 283 | 156 | 9 | 4 | 256 | 38 | 315 | 3.23e-36 | 135 |
| MsG0180001316.01.T01 | MTR_7g050710 | 32.404 | 287 | 140 | 7 | 4 | 256 | 41 | 307 | 6.47e-36 | 134 |
| MsG0180001316.01.T01 | MTR_3g061370 | 32.046 | 259 | 157 | 7 | 4 | 255 | 35 | 281 | 3.46e-34 | 129 |
| MsG0180001316.01.T01 | MTR_3g061370 | 29.779 | 272 | 153 | 12 | 177 | 415 | 15 | 281 | 1.82e-17 | 82.4 |
| MsG0180001316.01.T01 | MTR_7g050580 | 33.962 | 265 | 136 | 6 | 10 | 256 | 47 | 290 | 9.72e-34 | 128 |
| MsG0180001316.01.T01 | MTR_3g061340 | 34.221 | 263 | 130 | 13 | 4 | 252 | 38 | 271 | 2.79e-33 | 126 |
| MsG0180001316.01.T01 | MTR_3g061340 | 31.203 | 266 | 147 | 9 | 177 | 415 | 18 | 274 | 7.51e-23 | 97.8 |
| MsG0180001316.01.T01 | MTR_3g061320 | 31.801 | 261 | 150 | 8 | 4 | 255 | 38 | 279 | 2.13e-32 | 124 |
| MsG0180001316.01.T01 | MTR_3g061320 | 29.259 | 270 | 152 | 9 | 177 | 415 | 18 | 279 | 1.58e-21 | 94.0 |
| MsG0180001316.01.T01 | MTR_3g061330 | 42.857 | 140 | 77 | 3 | 4 | 143 | 38 | 174 | 1.50e-31 | 121 |
| MsG0180001316.01.T01 | MTR_3g061310 | 29.213 | 267 | 155 | 9 | 4 | 255 | 38 | 285 | 6.98e-29 | 114 |
| MsG0180001316.01.T01 | MTR_3g061310 | 28.358 | 268 | 163 | 8 | 177 | 415 | 18 | 285 | 3.24e-19 | 87.8 |
| MsG0180001316.01.T01 | MTR_4g119990 | 32.069 | 290 | 156 | 12 | 4 | 264 | 43 | 320 | 4.64e-28 | 114 |
| MsG0180001316.01.T01 | MTR_3g061290 | 40.323 | 124 | 72 | 2 | 4 | 127 | 38 | 159 | 3.05e-26 | 105 |
| MsG0180001316.01.T01 | MTR_5g044670 | 25.000 | 280 | 187 | 5 | 4 | 268 | 44 | 315 | 2.33e-24 | 103 |
| MsG0180001316.01.T01 | MTR_5g044670 | 27.240 | 279 | 154 | 12 | 184 | 418 | 32 | 305 | 1.12e-15 | 78.2 |
| MsG0180001316.01.T01 | MTR_1g035570 | 24.466 | 421 | 248 | 10 | 4 | 414 | 33 | 393 | 4.24e-24 | 103 |
| MsG0180001316.01.T01 | MTR_1g021270 | 22.702 | 533 | 279 | 16 | 10 | 414 | 49 | 576 | 2.56e-23 | 102 |
| MsG0180001316.01.T01 | MTR_6g043890 | 28.889 | 270 | 148 | 10 | 4 | 246 | 43 | 295 | 1.34e-22 | 98.6 |
| MsG0180001316.01.T01 | MTR_6g061070 | 25.664 | 452 | 271 | 14 | 3 | 415 | 45 | 470 | 4.05e-22 | 98.6 |
| MsG0180001316.01.T01 | MTR_5g070440 | 29.057 | 265 | 135 | 8 | 2 | 256 | 47 | 268 | 5.37e-22 | 95.5 |
| MsG0180001316.01.T01 | MTR_3g005460 | 22.083 | 480 | 294 | 13 | 2 | 415 | 51 | 516 | 1.19e-20 | 94.4 |
| MsG0180001316.01.T01 | MTR_3g005420 | 28.244 | 262 | 141 | 7 | 2 | 256 | 315 | 536 | 2.93e-20 | 93.2 |
| MsG0180001316.01.T01 | MTR_3g061300 | 39.370 | 127 | 72 | 3 | 295 | 418 | 2 | 126 | 5.61e-20 | 85.9 |
| MsG0180001316.01.T01 | MTR_3g005490 | 28.571 | 266 | 132 | 8 | 2 | 259 | 47 | 262 | 1.49e-19 | 88.2 |
| MsG0180001316.01.T01 | MTR_7g050640 | 46.667 | 75 | 40 | 0 | 2 | 76 | 39 | 113 | 3.84e-19 | 83.2 |
| MsG0180001316.01.T01 | MTR_4g068320 | 40.367 | 109 | 58 | 2 | 3 | 104 | 33 | 141 | 4.65e-19 | 89.0 |
| MsG0180001316.01.T01 | MTR_4g068320 | 43.011 | 93 | 46 | 4 | 183 | 268 | 311 | 403 | 1.87e-13 | 72.0 |
| MsG0180001316.01.T01 | MTR_3g005480 | 26.136 | 264 | 138 | 7 | 2 | 257 | 47 | 261 | 3.61e-18 | 84.3 |
| MsG0180001316.01.T01 | MTR_1g035620 | 22.551 | 439 | 249 | 15 | 4 | 416 | 37 | 410 | 1.83e-17 | 84.3 |
| MsG0180001316.01.T01 | MTR_1g035640 | 25.260 | 289 | 179 | 8 | 4 | 273 | 33 | 303 | 7.21e-17 | 82.8 |
| MsG0180001316.01.T01 | MTR_1g034240 | 36.036 | 111 | 58 | 2 | 4 | 104 | 35 | 142 | 8.95e-16 | 79.3 |
| MsG0180001316.01.T01 | MTR_1g034240 | 40.244 | 82 | 45 | 2 | 183 | 260 | 315 | 396 | 7.28e-12 | 67.0 |
| MsG0180001316.01.T01 | MTR_1g035490 | 26.250 | 240 | 142 | 9 | 183 | 415 | 117 | 328 | 1.94e-15 | 77.4 |
| MsG0180001316.01.T01 | MTR_3g005495 | 22.532 | 466 | 268 | 16 | 2 | 410 | 39 | 468 | 6.25e-15 | 76.6 |
| MsG0180001316.01.T01 | MTR_3g005440 | 36.170 | 94 | 57 | 1 | 2 | 95 | 46 | 136 | 4.65e-13 | 70.9 |
| MsG0180001316.01.T01 | MTR_3g061220 | 35.789 | 95 | 46 | 2 | 4 | 98 | 38 | 117 | 6.92e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001316.01.T01 | AT3G18990 | 28.025 | 314 | 164 | 10 | 2 | 259 | 32 | 339 | 4.89e-24 | 102 |
| MsG0180001316.01.T01 | AT3G18990 | 36.607 | 112 | 66 | 3 | 309 | 418 | 230 | 338 | 1.24e-14 | 75.1 |
| MsG0180001316.01.T01 | AT3G18990 | 27.564 | 312 | 168 | 9 | 2 | 259 | 32 | 339 | 2.35e-23 | 101 |
| MsG0180001316.01.T01 | AT3G18990 | 36.607 | 112 | 66 | 3 | 309 | 418 | 230 | 338 | 2.19e-14 | 74.7 |
| MsG0180001316.01.T01 | AT1G49480 | 36.607 | 112 | 66 | 3 | 309 | 418 | 115 | 223 | 1.33e-15 | 76.3 |
| MsG0180001316.01.T01 | AT1G49480 | 36.607 | 112 | 66 | 3 | 309 | 418 | 115 | 223 | 1.33e-15 | 76.3 |
| MsG0180001316.01.T01 | AT1G49480 | 36.607 | 112 | 66 | 3 | 309 | 418 | 115 | 223 | 1.33e-15 | 76.3 |
| MsG0180001316.01.T01 | AT1G49475 | 38.679 | 106 | 55 | 3 | 4 | 100 | 61 | 165 | 3.29e-14 | 71.2 |
| MsG0180001316.01.T01 | AT4G01580 | 35.135 | 111 | 63 | 2 | 4 | 112 | 58 | 161 | 1.67e-13 | 69.3 |
| MsG0180001316.01.T01 | AT3G18960 | 41.096 | 73 | 43 | 0 | 4 | 76 | 21 | 93 | 3.04e-13 | 68.2 |
| MsG0180001316.01.T01 | AT3G18960 | 40.000 | 75 | 45 | 0 | 2 | 76 | 56 | 130 | 3.12e-13 | 68.6 |
| MsG0180001316.01.T01 | AT3G18960 | 41.096 | 73 | 43 | 0 | 4 | 76 | 58 | 130 | 3.92e-13 | 68.6 |
Find 72 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAGAGGTTGGAAGCTATTT+TGG | 0.155141 | 1:+19353459 | MsG0180001316.01.T01:CDS |
| TGAGGACTCCATTGAAATTT+TGG | 0.168496 | 1:+19351797 | MsG0180001316.01.T01:CDS |
| AACTCTTGGATGGGAGAGTT+TGG | 0.242668 | 1:+19352504 | MsG0180001316.01.T01:CDS |
| GGACACATAATTGGTGATTT+TGG | 0.244060 | 1:-19351852 | None:intergenic |
| TAATTTGTAATGAAGGAATT+TGG | 0.257343 | 1:-19353338 | None:intergenic |
| CATGATGCTTAGGCAAGTTT+TGG | 0.267797 | 1:-19351935 | None:intergenic |
| CAAAGTAAGGTATTGGCTTT+TGG | 0.269874 | 1:-19352624 | None:intergenic |
| GTACACAACAAGTTGAAAAT+TGG | 0.270510 | 1:+19352578 | MsG0180001316.01.T01:CDS |
| GAATAACAATGCAACTTTAC+AGG | 0.277076 | 1:-19353413 | None:intergenic |
| CTCGAATGCCCTCGTTGATT+TGG | 0.289824 | 1:-19353189 | None:intergenic |
| CAGATGGTGATGTTAAAGTT+TGG | 0.294860 | 1:+19353377 | MsG0180001316.01.T01:CDS |
| TGTGGTTGAGGACACATAAT+TGG | 0.354680 | 1:-19351861 | None:intergenic |
| TGACATTCTTCTTCAACTCT+TGG | 0.360124 | 1:+19352490 | MsG0180001316.01.T01:CDS |
| GAAACTATTATGACAAATAA+AGG | 0.361575 | 1:+19352829 | MsG0180001316.01.T01:CDS |
| TTACTTTCAAAGTAAGGTAT+TGG | 0.362100 | 1:-19352631 | None:intergenic |
| AGATGGTGATGTTAAAGTTT+GGG | 0.372056 | 1:+19353378 | MsG0180001316.01.T01:CDS |
| TACACAACAAGTTGAAAATT+GGG | 0.372067 | 1:+19352579 | MsG0180001316.01.T01:CDS |
| CTCAATTTCTTATGTGGTTG+AGG | 0.383589 | 1:-19351873 | None:intergenic |
| TGTTATTCCAACATGAAATC+AGG | 0.384360 | 1:+19353428 | MsG0180001316.01.T01:CDS |
| TTCCTTCATTACAAATTACT+TGG | 0.385639 | 1:+19353343 | MsG0180001316.01.T01:CDS |
| ACTCTTGGATGGGAGAGTTT+GGG | 0.388176 | 1:+19352505 | MsG0180001316.01.T01:CDS |
| ATCCAAGTAATTTGTAATGA+AGG | 0.391002 | 1:-19353345 | None:intergenic |
| CCACATTCCCCTCCCCTTCA+AGG | 0.392505 | 1:+19352677 | MsG0180001316.01.T01:CDS |
| ATATTATTACTTTCAAAGTA+AGG | 0.401134 | 1:-19352637 | None:intergenic |
| TTCAATCTCAAGGGTACTCT+TGG | 0.401861 | 1:-19351718 | None:intergenic |
| TATTTAACTGCTCCTGCTCT+TGG | 0.409863 | 1:-19352142 | None:intergenic |
| GCTTCCAACCTCTACAAAAC+TGG | 0.416735 | 1:-19353451 | None:intergenic |
| TGACTTGTCCAAAATTTCAA+TGG | 0.423265 | 1:-19351805 | None:intergenic |
| TCATTTCTCAATTTCTTATG+TGG | 0.425680 | 1:-19351879 | None:intergenic |
| ATTCTTCTTCAACTCTTGGA+TGG | 0.449374 | 1:+19352494 | MsG0180001316.01.T01:CDS |
| AACAAGTTGGATTACCTTGA+AGG | 0.449668 | 1:-19352691 | None:intergenic |
| TTCACTAGATCATGGGCATA+TGG | 0.450667 | 1:+19351647 | MsG0180001316.01.T01:CDS |
| TCAACGAGACAAAGACTTCT+CGG | 0.453926 | 1:+19352795 | MsG0180001316.01.T01:CDS |
| TGAGTGCGACTAAAATCAAT+GGG | 0.458480 | 1:+19351580 | MsG0180001316.01.T01:CDS |
| CAAGAATTATACCACTAGAT+TGG | 0.461063 | 1:-19351959 | None:intergenic |
| ACACATTATTCACTAGATCA+TGG | 0.461106 | 1:+19351639 | MsG0180001316.01.T01:CDS |
| TGGAGTTGAATTTATCAGCT+TGG | 0.461811 | 1:-19353137 | None:intergenic |
| TTCTTCTTCAACTCTTGGAT+GGG | 0.471949 | 1:+19352495 | MsG0180001316.01.T01:CDS |
| TCAACGAGGGCATTCGAGAT+TGG | 0.486711 | 1:+19353194 | MsG0180001316.01.T01:CDS |
| CTGGAAGAATTAAAGGTGGA+TGG | 0.489864 | 1:+19352543 | MsG0180001316.01.T01:CDS |
| TGGGAAGAAAATAAATTGAA+AGG | 0.492702 | 1:+19353479 | MsG0180001316.01.T01:CDS |
| ATGAGTGCGACTAAAATCAA+TGG | 0.496366 | 1:+19351579 | MsG0180001316.01.T01:CDS |
| AGTAATAATATTTAGACTTG+AGG | 0.498996 | 1:+19352649 | MsG0180001316.01.T01:CDS |
| TAAAGTTTGGGAAGAAATTG+TGG | 0.501503 | 1:+19353390 | MsG0180001316.01.T01:CDS |
| CCTTGAAGGGGAGGGGAATG+TGG | 0.501998 | 1:-19352677 | None:intergenic |
| ACAAGTTGGATTACCTTGAA+GGG | 0.512204 | 1:-19352690 | None:intergenic |
| GGAAAGGATATTCAATCTCA+AGG | 0.515164 | 1:-19351728 | None:intergenic |
| TTGGATTACCTTGAAGGGGA+GGG | 0.522489 | 1:-19352685 | None:intergenic |
| CTAGATTGGACATGATGCTT+AGG | 0.523842 | 1:-19351945 | None:intergenic |
| TCTGGAGTCTTGAGAAACAT+TGG | 0.528591 | 1:-19351540 | None:intergenic |
| CACATTATTCACTAGATCAT+GGG | 0.539236 | 1:+19351640 | MsG0180001316.01.T01:CDS |
| TCTCGATATGGCAGGAGAGA+AGG | 0.547348 | 1:+19353056 | MsG0180001316.01.T01:intron |
| TGGATTACCTTGAAGGGGAG+GGG | 0.550048 | 1:-19352684 | None:intergenic |
| TGGACAAGTCACCTTCAAGC+AGG | 0.555459 | 1:+19351817 | MsG0180001316.01.T01:CDS |
| CTTGGATAACAAGGAACAGA+TGG | 0.569177 | 1:+19353361 | MsG0180001316.01.T01:CDS |
| AATGACTCAAGTGAAGGTGT+TGG | 0.575265 | 1:+19351897 | MsG0180001316.01.T01:CDS |
| AAACTGGCCTGATTTCATGT+TGG | 0.576131 | 1:-19353435 | None:intergenic |
| TACAAATTACTTGGATAACA+AGG | 0.576875 | 1:+19353352 | MsG0180001316.01.T01:CDS |
| TGATTGTTAGCAAATTGTGA+TGG | 0.578116 | 1:-19352449 | None:intergenic |
| GAAGAAAATAAATTGAAAGG+TGG | 0.594266 | 1:+19353482 | MsG0180001316.01.T01:CDS |
| GAAAGGATATTCAATCTCAA+GGG | 0.599161 | 1:-19351727 | None:intergenic |
| ATGTTTCTCAAGACTCCAGA+TGG | 0.601949 | 1:+19351543 | MsG0180001316.01.T01:CDS |
| TTGAGAAATGACTCAAGTGA+AGG | 0.604348 | 1:+19351891 | MsG0180001316.01.T01:CDS |
| CAAGTTGGATTACCTTGAAG+GGG | 0.606972 | 1:-19352689 | None:intergenic |
| GATTGTTAGCAAATTGTGAT+GGG | 0.613701 | 1:-19352448 | None:intergenic |
| GTTGGATTACCTTGAAGGGG+AGG | 0.616096 | 1:-19352686 | None:intergenic |
| ACACAACAAGTTGAAAATTG+GGG | 0.637450 | 1:+19352580 | MsG0180001316.01.T01:CDS |
| AAGCATCATGTCCAATCTAG+TGG | 0.644078 | 1:+19351948 | MsG0180001316.01.T01:CDS |
| TGATCAACAAAGTAGTGATG+AGG | 0.654895 | 1:+19351779 | MsG0180001316.01.T01:CDS |
| AATATTATGCCAAATCAACG+AGG | 0.719522 | 1:+19353180 | MsG0180001316.01.T01:CDS |
| ATATTATGCCAAATCAACGA+GGG | 0.724045 | 1:+19353181 | MsG0180001316.01.T01:CDS |
| GAGTGCGACTAAAATCAATG+GGG | 0.768451 | 1:+19351581 | MsG0180001316.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTCTAATTTTTATACA+CGG | + | Chr1:19352980-19352999 | MsG0180001316.01.T01:intron | 10.0% |
| !! | ATATTATTACTTTCAAAGTA+AGG | - | Chr1:19352640-19352659 | None:intergenic | 15.0% |
| !!! | AAATTTCAATGCATATATTT+TGG | - | Chr1:19352294-19352313 | None:intergenic | 15.0% |
| !!! | ATTATTTTGAAGATAAAACA+AGG | - | Chr1:19352745-19352764 | None:intergenic | 15.0% |
| !!! | TTATCTTTTAATTTATCCAA+TGG | + | Chr1:19351996-19352015 | MsG0180001316.01.T01:intron | 15.0% |
| !!! | TTGTTTTATCTTCAAAATAA+TGG | + | Chr1:19352744-19352763 | MsG0180001316.01.T01:intron | 15.0% |
| !! | AAGATAAAACAAGGTAATAA+AGG | - | Chr1:19352736-19352755 | None:intergenic | 20.0% |
| !! | AGTAATAATATTTAGACTTG+AGG | + | Chr1:19352649-19352668 | MsG0180001316.01.T01:CDS | 20.0% |
| !! | ATAATATTGACCTTGAAAAA+TGG | - | Chr1:19353168-19353187 | None:intergenic | 20.0% |
| !! | GAAACTATTATGACAAATAA+AGG | + | Chr1:19352829-19352848 | MsG0180001316.01.T01:CDS | 20.0% |
| !! | TTCAAAAGAAAAAAACAAGT+TGG | - | Chr1:19352707-19352726 | None:intergenic | 20.0% |
| !! | TTTGTTAAAAAGAATTCAGA+GGG | + | Chr1:19352342-19352361 | MsG0180001316.01.T01:intron | 20.0% |
| !!! | ATTTGTTAAAAAGAATTCAG+AGG | + | Chr1:19352341-19352360 | MsG0180001316.01.T01:intron | 20.0% |
| !!! | TAATTTGTAATGAAGGAATT+TGG | - | Chr1:19353341-19353360 | None:intergenic | 20.0% |
| !!! | TATTTTTCTGGAAGAATTAA+AGG | + | Chr1:19352536-19352555 | MsG0180001316.01.T01:CDS | 20.0% |
| ! | AATCAAATAATCCTTCTTTC+AGG | + | Chr1:19352180-19352199 | MsG0180001316.01.T01:intron | 25.0% |
| ! | ACATATTTATAGTCATTCCT+TGG | + | Chr1:19352220-19352239 | MsG0180001316.01.T01:intron | 25.0% |
| ! | ATAAATATGTGAAGACTTCA+TGG | - | Chr1:19352210-19352229 | None:intergenic | 25.0% |
| ! | GAAGAAAATAAATTGAAAGG+TGG | + | Chr1:19353482-19353501 | MsG0180001316.01.T01:CDS | 25.0% |
| ! | TACAAATTACTTGGATAACA+AGG | + | Chr1:19353352-19353371 | MsG0180001316.01.T01:CDS | 25.0% |
| ! | TCATTTCTCAATTTCTTATG+TGG | - | Chr1:19351882-19351901 | None:intergenic | 25.0% |
| ! | TGGGAAGAAAATAAATTGAA+AGG | + | Chr1:19353479-19353498 | MsG0180001316.01.T01:CDS | 25.0% |
| ! | TTACTTTCAAAGTAAGGTAT+TGG | - | Chr1:19352634-19352653 | None:intergenic | 25.0% |
| ! | TTCCTTCATTACAAATTACT+TGG | + | Chr1:19353343-19353362 | MsG0180001316.01.T01:CDS | 25.0% |
| !! | ATCCAAGTAATTTGTAATGA+AGG | - | Chr1:19353348-19353367 | None:intergenic | 25.0% |
| !! | CTTAATGTTCATATTTTCAG+AGG | + | Chr1:19353548-19353567 | MsG0180001316.01.T01:CDS | 25.0% |
| !! | TACACAACAAGTTGAAAATT+GGG | + | Chr1:19352579-19352598 | MsG0180001316.01.T01:CDS | 25.0% |
| !!! | ACATACTGCATTTTAATTTC+GGG | - | Chr1:19352428-19352447 | None:intergenic | 25.0% |
| !!! | GACATACTGCATTTTAATTT+CGG | - | Chr1:19352429-19352448 | None:intergenic | 25.0% |
| !!! | TTTGTTCATGTTGATTTTCA+TGG | - | Chr1:19351752-19351771 | None:intergenic | 25.0% |
| AAACCGAAAAAACTTCATTG+CGG | + | Chr1:19353079-19353098 | MsG0180001316.01.T01:CDS | 30.0% | |
| AATATTATGCCAAATCAACG+AGG | + | Chr1:19353180-19353199 | MsG0180001316.01.T01:CDS | 30.0% | |
| AATTAATCAAAGACTCACCA+AGG | - | Chr1:19352240-19352259 | None:intergenic | 30.0% | |
| ACACATTATTCACTAGATCA+TGG | + | Chr1:19351639-19351658 | MsG0180001316.01.T01:CDS | 30.0% | |
| ACTAATTATAGTAACTCGAG+TGG | + | Chr1:19352890-19352909 | MsG0180001316.01.T01:intron | 30.0% | |
| ATATTATGCCAAATCAACGA+GGG | + | Chr1:19353181-19353200 | MsG0180001316.01.T01:CDS | 30.0% | |
| CAAGAATTATACCACTAGAT+TGG | - | Chr1:19351962-19351981 | None:intergenic | 30.0% | |
| CACATTATTCACTAGATCAT+GGG | + | Chr1:19351640-19351659 | MsG0180001316.01.T01:CDS | 30.0% | |
| GAAAGGATATTCAATCTCAA+GGG | - | Chr1:19351730-19351749 | None:intergenic | 30.0% | |
| GAATAACAATGCAACTTTAC+AGG | - | Chr1:19353416-19353435 | None:intergenic | 30.0% | |
| GACCTTGAAAAATGGATATT+TGG | - | Chr1:19353160-19353179 | None:intergenic | 30.0% | |
| GATTGTTAGCAAATTGTGAT+GGG | - | Chr1:19352451-19352470 | None:intergenic | 30.0% | |
| TAAAGTTTGGGAAGAAATTG+TGG | + | Chr1:19353390-19353409 | MsG0180001316.01.T01:CDS | 30.0% | |
| TGATTGTTAGCAAATTGTGA+TGG | - | Chr1:19352452-19352471 | None:intergenic | 30.0% | |
| TGTTATTCCAACATGAAATC+AGG | + | Chr1:19353428-19353447 | MsG0180001316.01.T01:CDS | 30.0% | |
| TTCGACTTCAAAATTTCCAT+TGG | - | Chr1:19352015-19352034 | None:intergenic | 30.0% | |
| ! | ACACAACAAGTTGAAAATTG+GGG | + | Chr1:19352580-19352599 | MsG0180001316.01.T01:CDS | 30.0% |
| ! | AGATGGTGATGTTAAAGTTT+GGG | + | Chr1:19353378-19353397 | MsG0180001316.01.T01:CDS | 30.0% |
| ! | CTAAAATCAATGGGGATTTT+TGG | + | Chr1:19351589-19351608 | MsG0180001316.01.T01:CDS | 30.0% |
| ! | GAAAGTATAACAACACTTGT+TGG | - | Chr1:19353276-19353295 | None:intergenic | 30.0% |
| ! | GTACACAACAAGTTGAAAAT+TGG | + | Chr1:19352578-19352597 | MsG0180001316.01.T01:CDS | 30.0% |
| ! | TATGTTGTTCATTTTCCTAG+AGG | + | Chr1:19352049-19352068 | MsG0180001316.01.T01:intron | 30.0% |
| ! | TGACTTGTCCAAAATTTCAA+TGG | - | Chr1:19351808-19351827 | None:intergenic | 30.0% |
| ! | TGGGATGCTAAATATTTTTC+TGG | + | Chr1:19352524-19352543 | MsG0180001316.01.T01:CDS | 30.0% |
| !! | CTCCAAATATCCATTTTTCA+AGG | + | Chr1:19353155-19353174 | MsG0180001316.01.T01:CDS | 30.0% |
| !! | TTTTCTGGAAGAATTAAAGG+TGG | + | Chr1:19352539-19352558 | MsG0180001316.01.T01:CDS | 30.0% |
| !!! | ATTTTTGGTTTCAAAAGGGT+TGG | + | Chr1:19351604-19351623 | MsG0180001316.01.T01:CDS | 30.0% |
| !!! | TCATGTTGATTTTCATGGAA+AGG | - | Chr1:19351747-19351766 | None:intergenic | 30.0% |
| AAAAACTTCATTGCGGACAA+AGG | + | Chr1:19353086-19353105 | MsG0180001316.01.T01:CDS | 35.0% | |
| ATGAGTGCGACTAAAATCAA+TGG | + | Chr1:19351579-19351598 | MsG0180001316.01.T01:CDS | 35.0% | |
| ATTATAGTAACTCGAGTGGT+TGG | + | Chr1:19352894-19352913 | MsG0180001316.01.T01:intron | 35.0% | |
| ATTCTTCTTCAACTCTTGGA+TGG | + | Chr1:19352494-19352513 | MsG0180001316.01.T01:CDS | 35.0% | |
| CTCAATTTCTTATGTGGTTG+AGG | - | Chr1:19351876-19351895 | None:intergenic | 35.0% | |
| GGAAAGGATATTCAATCTCA+AGG | - | Chr1:19351731-19351750 | None:intergenic | 35.0% | |
| TGACATTCTTCTTCAACTCT+TGG | + | Chr1:19352490-19352509 | MsG0180001316.01.T01:CDS | 35.0% | |
| TGAGTGCGACTAAAATCAAT+GGG | + | Chr1:19351580-19351599 | MsG0180001316.01.T01:CDS | 35.0% | |
| TGATCAACAAAGTAGTGATG+AGG | + | Chr1:19351779-19351798 | MsG0180001316.01.T01:CDS | 35.0% | |
| TGGAGTTGAATTTATCAGCT+TGG | - | Chr1:19353140-19353159 | None:intergenic | 35.0% | |
| TTATAGTAACTCGAGTGGTT+GGG | + | Chr1:19352895-19352914 | MsG0180001316.01.T01:intron | 35.0% | |
| TTCATGGTAATCCTGAAAGA+AGG | - | Chr1:19352194-19352213 | None:intergenic | 35.0% | |
| TTCTTCTTCAACTCTTGGAT+GGG | + | Chr1:19352495-19352514 | MsG0180001316.01.T01:CDS | 35.0% | |
| TTGAGAAATGACTCAAGTGA+AGG | + | Chr1:19351891-19351910 | MsG0180001316.01.T01:CDS | 35.0% | |
| ! | AACAAGTTGGATTACCTTGA+AGG | - | Chr1:19352694-19352713 | None:intergenic | 35.0% |
| ! | ACAAGTTGGATTACCTTGAA+GGG | - | Chr1:19352693-19352712 | None:intergenic | 35.0% |
| ! | AGAGGGAGTATACTAGTAAT+TGG | + | Chr1:19352359-19352378 | MsG0180001316.01.T01:intron | 35.0% |
| ! | ATTTCCCAATTTTTGCCATC+TGG | - | Chr1:19351561-19351580 | None:intergenic | 35.0% |
| ! | CAAGACGCAAACAAATTTTG+AGG | + | Chr1:19352942-19352961 | MsG0180001316.01.T01:intron | 35.0% |
| ! | CAGATGGTGATGTTAAAGTT+TGG | + | Chr1:19353377-19353396 | MsG0180001316.01.T01:CDS | 35.0% |
| ! | CGAAGAAAACTCTCATTTTG+TGG | + | Chr1:19351683-19351702 | MsG0180001316.01.T01:CDS | 35.0% |
| ! | CTCGTTGAACTGATTCTAAA+GGG | - | Chr1:19352783-19352802 | None:intergenic | 35.0% |
| ! | GTTCATTTTCCTAGAGGATA+CGG | + | Chr1:19352055-19352074 | MsG0180001316.01.T01:intron | 35.0% |
| ! | TCTCGTTGAACTGATTCTAA+AGG | - | Chr1:19352784-19352803 | None:intergenic | 35.0% |
| ! | TGAGGACTCCATTGAAATTT+TGG | + | Chr1:19351797-19351816 | MsG0180001316.01.T01:CDS | 35.0% |
| ! | TTCATTTTCCTAGAGGATAC+GGG | + | Chr1:19352056-19352075 | MsG0180001316.01.T01:intron | 35.0% |
| !! | GGACACATAATTGGTGATTT+TGG | - | Chr1:19351855-19351874 | None:intergenic | 35.0% |
| !! | TAGAGGTTGGAAGCTATTTT+GGG | + | Chr1:19353460-19353479 | MsG0180001316.01.T01:CDS | 35.0% |
| !! | TGTTTTTGAGCTCATCAAGA+GGG | + | Chr1:19353514-19353533 | MsG0180001316.01.T01:CDS | 35.0% |
| !!! | ACGTTGTTTTTGTCTCGATA+TGG | + | Chr1:19353044-19353063 | MsG0180001316.01.T01:intron | 35.0% |
| !!! | CAAAGTAAGGTATTGGCTTT+TGG | - | Chr1:19352627-19352646 | None:intergenic | 35.0% |
| !!! | GGGGATTTTTGGTTTCAAAA+GGG | + | Chr1:19351600-19351619 | MsG0180001316.01.T01:CDS | 35.0% |
| !!! | TGGGGATTTTTGGTTTCAAA+AGG | + | Chr1:19351599-19351618 | MsG0180001316.01.T01:CDS | 35.0% |
| !!! | TGTCCGCAATGAAGTTTTTT+CGG | - | Chr1:19353085-19353104 | None:intergenic | 35.0% |
| AAGCATCATGTCCAATCTAG+TGG | + | Chr1:19351948-19351967 | MsG0180001316.01.T01:CDS | 40.0% | |
| AGACTCCAGATGGCAAAAAT+TGG | + | Chr1:19351553-19351572 | MsG0180001316.01.T01:CDS | 40.0% | |
| ATGTTTCTCAAGACTCCAGA+TGG | + | Chr1:19351543-19351562 | MsG0180001316.01.T01:CDS | 40.0% | |
| CAAAAAGCAATACCAAGAGC+AGG | + | Chr1:19352130-19352149 | MsG0180001316.01.T01:CDS | 40.0% | |
| CTAGATTGGACATGATGCTT+AGG | - | Chr1:19351948-19351967 | None:intergenic | 40.0% | |
| CTGGAAGAATTAAAGGTGGA+TGG | + | Chr1:19352543-19352562 | MsG0180001316.01.T01:CDS | 40.0% | |
| CTTGGATAACAAGGAACAGA+TGG | + | Chr1:19353361-19353380 | MsG0180001316.01.T01:CDS | 40.0% | |
| GACTCCAGATGGCAAAAATT+GGG | + | Chr1:19351554-19351573 | MsG0180001316.01.T01:CDS | 40.0% | |
| GAGTGCGACTAAAATCAATG+GGG | + | Chr1:19351581-19351600 | MsG0180001316.01.T01:CDS | 40.0% | |
| TATTTAACTGCTCCTGCTCT+TGG | - | Chr1:19352145-19352164 | None:intergenic | 40.0% | |
| TCAACGAGACAAAGACTTCT+CGG | + | Chr1:19352795-19352814 | MsG0180001316.01.T01:CDS | 40.0% | |
| TGTGGTTGAGGACACATAAT+TGG | - | Chr1:19351864-19351883 | None:intergenic | 40.0% | |
| TTCACTAGATCATGGGCATA+TGG | + | Chr1:19351647-19351666 | MsG0180001316.01.T01:CDS | 40.0% | |
| ! | AAACTGGCCTGATTTCATGT+TGG | - | Chr1:19353438-19353457 | None:intergenic | 40.0% |
| ! | AATGACTCAAGTGAAGGTGT+TGG | + | Chr1:19351897-19351916 | MsG0180001316.01.T01:CDS | 40.0% |
| ! | CAAGTTGGATTACCTTGAAG+GGG | - | Chr1:19352692-19352711 | None:intergenic | 40.0% |
| ! | CATGATGCTTAGGCAAGTTT+TGG | - | Chr1:19351938-19351957 | None:intergenic | 40.0% |
| ! | GTAGAGGTTGGAAGCTATTT+TGG | + | Chr1:19353459-19353478 | MsG0180001316.01.T01:CDS | 40.0% |
| ! | TCTGGAGTCTTGAGAAACAT+TGG | - | Chr1:19351543-19351562 | None:intergenic | 40.0% |
| !! | AAATCAGGCCAGTTTTGTAG+AGG | + | Chr1:19353443-19353462 | MsG0180001316.01.T01:CDS | 40.0% |
| !! | CTAGCTCGTGCTTTACTTTT+CGG | - | Chr1:19352097-19352116 | None:intergenic | 40.0% |
| !! | CTAGTTTTCTTCCTGCTTGA+AGG | - | Chr1:19351831-19351850 | None:intergenic | 40.0% |
| !! | GTGTTTTTGAGCTCATCAAG+AGG | + | Chr1:19353513-19353532 | MsG0180001316.01.T01:CDS | 40.0% |
| !! | TGTTTTTGTCTCGATATGGC+AGG | + | Chr1:19353048-19353067 | MsG0180001316.01.T01:intron | 40.0% |
| !! | TTCAATCTCAAGGGTACTCT+TGG | - | Chr1:19351721-19351740 | None:intergenic | 40.0% |
| AACTCTTGGATGGGAGAGTT+TGG | + | Chr1:19352504-19352523 | MsG0180001316.01.T01:CDS | 45.0% | |
| ACTCTTGGATGGGAGAGTTT+GGG | + | Chr1:19352505-19352524 | MsG0180001316.01.T01:CDS | 45.0% | |
| GCTTCCAACCTCTACAAAAC+TGG | - | Chr1:19353454-19353473 | None:intergenic | 45.0% | |
| TTGGATTACCTTGAAGGGGA+GGG | - | Chr1:19352688-19352707 | None:intergenic | 45.0% | |
| ! | TGGGACTGATTTCTCTACGA+CGG | + | Chr1:19352914-19352933 | MsG0180001316.01.T01:intron | 45.0% |
| GTTGGATTACCTTGAAGGGG+AGG | - | Chr1:19352689-19352708 | None:intergenic | 50.0% | |
| TCTCGATATGGCAGGAGAGA+AGG | + | Chr1:19353056-19353075 | MsG0180001316.01.T01:intron | 50.0% | |
| TGGACAAGTCACCTTCAAGC+AGG | + | Chr1:19351817-19351836 | MsG0180001316.01.T01:CDS | 50.0% | |
| TGGATTACCTTGAAGGGGAG+GGG | - | Chr1:19352687-19352706 | None:intergenic | 50.0% | |
| ! | CTCGAATGCCCTCGTTGATT+TGG | - | Chr1:19353192-19353211 | None:intergenic | 50.0% |
| ! | GCATCGATGTTCTGCGCATA+TGG | + | Chr1:19352861-19352880 | MsG0180001316.01.T01:intron | 50.0% |
| !! | CAGGCCAGTTTTGTAGAGGT+TGG | + | Chr1:19353447-19353466 | MsG0180001316.01.T01:CDS | 50.0% |
| !! | TCAACGAGGGCATTCGAGAT+TGG | + | Chr1:19353194-19353213 | MsG0180001316.01.T01:CDS | 50.0% |
| CCACATTCCCCTCCCCTTCA+AGG | + | Chr1:19352677-19352696 | MsG0180001316.01.T01:CDS | 60.0% | |
| CCTTGAAGGGGAGGGGAATG+TGG | - | Chr1:19352680-19352699 | None:intergenic | 60.0% | |
| CGCTAGCACCCGTATCCTCT+AGG | - | Chr1:19352067-19352086 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 19351522 | 19353577 | 19351522 | ID=MsG0180001316.01;Name=MsG0180001316.01 |
| Chr1 | mRNA | 19351522 | 19353577 | 19351522 | ID=MsG0180001316.01.T01;Parent=MsG0180001316.01;Name=MsG0180001316.01.T01;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|1|1|6|0|418 |
| Chr1 | exon | 19351522 | 19351969 | 19351522 | ID=MsG0180001316.01.T01:exon:14318;Parent=MsG0180001316.01.T01 |
| Chr1 | exon | 19352069 | 19352166 | 19352069 | ID=MsG0180001316.01.T01:exon:14319;Parent=MsG0180001316.01.T01 |
| Chr1 | exon | 19352443 | 19352698 | 19352443 | ID=MsG0180001316.01.T01:exon:14320;Parent=MsG0180001316.01.T01 |
| Chr1 | exon | 19352788 | 19352850 | 19352788 | ID=MsG0180001316.01.T01:exon:14321;Parent=MsG0180001316.01.T01 |
| Chr1 | exon | 19353070 | 19353215 | 19353070 | ID=MsG0180001316.01.T01:exon:14322;Parent=MsG0180001316.01.T01 |
| Chr1 | exon | 19353332 | 19353577 | 19353332 | ID=MsG0180001316.01.T01:exon:14323;Parent=MsG0180001316.01.T01 |
| Chr1 | CDS | 19351522 | 19351969 | 19351522 | ID=MsG0180001316.01.T01:cds;Parent=MsG0180001316.01.T01 |
| Chr1 | CDS | 19352069 | 19352166 | 19352069 | ID=MsG0180001316.01.T01:cds;Parent=MsG0180001316.01.T01 |
| Chr1 | CDS | 19352443 | 19352698 | 19352443 | ID=MsG0180001316.01.T01:cds;Parent=MsG0180001316.01.T01 |
| Chr1 | CDS | 19352788 | 19352850 | 19352788 | ID=MsG0180001316.01.T01:cds;Parent=MsG0180001316.01.T01 |
| Chr1 | CDS | 19353070 | 19353215 | 19353070 | ID=MsG0180001316.01.T01:cds;Parent=MsG0180001316.01.T01 |
| Chr1 | CDS | 19353332 | 19353577 | 19353332 | ID=MsG0180001316.01.T01:cds;Parent=MsG0180001316.01.T01 |
| Gene Sequence |
| Protein sequence |
