AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002477.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002477.01.T01 MTR_1g035570 82.697 393 61 3 1 386 1 393 0.0 642
MsG0180002477.01.T01 MTR_1g035570 60.213 470 59 7 383 804 16 405 9.15e-163 478
MsG0180002477.01.T01 MTR_1g035490 68.139 317 54 7 112 386 16 327 4.02e-123 373
MsG0180002477.01.T01 MTR_1g035490 63.091 317 63 5 483 757 19 323 9.95e-111 341
MsG0180002477.01.T01 MTR_1g035640 44.075 481 156 13 1 386 1 463 1.24e-106 335
MsG0180002477.01.T01 MTR_1g035640 43.312 471 187 8 383 794 16 465 3.77e-106 334
MsG0180002477.01.T01 MTR_1g035620 44.811 424 180 12 1 386 1 408 8.07e-99 313
MsG0180002477.01.T01 MTR_1g035620 39.141 419 171 9 386 757 23 404 1.94e-79 262
MsG0180002477.01.T01 MTR_1g050845 43.928 387 161 13 1 354 1 364 3.56e-77 267
MsG0180002477.01.T01 MTR_1g050845 40.947 359 156 9 386 738 23 331 1.65e-66 237
MsG0180002477.01.T01 MTR_6g061070 35.011 457 238 15 381 792 27 469 1.04e-62 218
MsG0180002477.01.T01 MTR_6g061070 32.604 457 210 12 14 386 27 469 1.07e-61 216
MsG0180002477.01.T01 MTR_1g035650 42.995 207 83 2 386 583 23 203 2.06e-45 162
MsG0180002477.01.T01 MTR_1g035650 42.991 214 98 4 1 201 1 203 4.86e-44 158
MsG0180002477.01.T01 MTR_8g103940 27.389 471 277 18 371 792 39 493 1.14e-36 145
MsG0180002477.01.T01 MTR_8g103940 27.517 298 176 9 14 283 48 333 8.66e-28 118
MsG0180002477.01.T01 MTR_3g098790 32.056 287 172 9 386 663 27 299 2.70e-32 128
MsG0180002477.01.T01 MTR_3g098790 31.579 285 171 7 14 281 22 299 8.57e-28 115
MsG0180002477.01.T01 MTR_5g044670 30.968 310 185 9 370 667 15 307 3.19e-32 128
MsG0180002477.01.T01 MTR_5g044670 28.866 291 178 6 14 284 25 306 1.77e-29 120
MsG0180002477.01.T01 MTR_7g050560 31.317 281 176 6 14 285 22 294 8.68e-32 126
MsG0180002477.01.T01 MTR_7g050560 30.986 284 170 8 386 663 27 290 1.46e-28 117
MsG0180002477.01.T01 MTR_7g050590 32.423 293 167 9 388 663 2 280 8.41e-31 123
MsG0180002477.01.T01 MTR_7g050590 31.359 287 163 8 21 281 2 280 2.17e-28 116
MsG0180002477.01.T01 MTR_1g108780 25.966 466 274 13 382 792 7 456 1.88e-30 126
MsG0180002477.01.T01 MTR_1g108780 27.972 286 177 8 20 282 12 291 2.48e-27 116
MsG0180002477.01.T01 MTR_7g050710 30.094 319 171 8 8 289 12 315 6.69e-30 121
MsG0180002477.01.T01 MTR_7g050710 29.393 313 197 8 364 663 6 307 1.50e-28 117
MsG0180002477.01.T01 MTR_1g035480 43.333 150 66 4 14 159 26 160 7.31e-29 114
MsG0180002477.01.T01 MTR_1g035480 43.966 116 62 2 383 498 28 140 2.28e-25 104
MsG0180002477.01.T01 MTR_7g050720 32.326 331 173 15 365 663 4 315 1.46e-27 114
MsG0180002477.01.T01 MTR_7g050720 30.464 302 171 12 14 281 19 315 1.68e-25 108
MsG0180002477.01.T01 MTR_3g061350 27.305 282 184 8 9 279 12 283 3.02e-26 109
MsG0180002477.01.T01 MTR_3g061350 27.500 280 179 6 386 661 24 283 6.65e-26 108
MsG0180002477.01.T01 MTR_3g061310 27.835 291 172 9 9 279 12 284 5.41e-26 108
MsG0180002477.01.T01 MTR_3g061310 25.170 294 196 8 371 661 12 284 7.47e-25 105
MsG0180002477.01.T01 MTR_7g050580 31.317 281 176 6 14 285 22 294 6.61e-26 109
MsG0180002477.01.T01 MTR_7g050580 29.739 306 186 8 365 663 7 290 6.99e-26 109
MsG0180002477.01.T01 MTR_1g033740 39.041 146 80 3 14 159 31 167 1.81e-25 105
MsG0180002477.01.T01 MTR_1g033740 34.591 159 87 3 386 544 36 177 1.11e-24 102
MsG0180002477.01.T01 MTR_1g035510 31.982 222 124 8 21 224 2 214 3.89e-25 104
MsG0180002477.01.T01 MTR_1g035510 32.743 226 132 9 388 606 2 214 2.83e-24 102
MsG0180002477.01.T01 MTR_3g061340 26.761 284 173 9 9 279 12 273 6.39e-24 102
MsG0180002477.01.T01 MTR_3g061340 25.085 295 182 11 372 661 13 273 2.01e-23 101
MsG0180002477.01.T01 MTR_1g035500 41.985 131 61 3 14 144 34 149 3.42e-23 98.2
MsG0180002477.01.T01 MTR_1g035500 39.370 127 74 2 372 498 25 148 1.77e-22 96.3
MsG0180002477.01.T01 MTR_3g061320 27.365 296 161 12 9 279 12 278 3.71e-23 100
MsG0180002477.01.T01 MTR_3g061320 25.170 294 190 9 371 661 12 278 8.10e-22 96.7
MsG0180002477.01.T01 MTR_3g061370 26.174 298 167 10 9 279 9 280 8.30e-23 99.8
MsG0180002477.01.T01 MTR_3g061370 26.408 284 177 7 386 661 21 280 1.35e-22 99.0
MsG0180002477.01.T01 MTR_1g035460 26.230 305 191 9 388 670 2 294 4.53e-22 99.8
MsG0180002477.01.T01 MTR_1g035460 24.671 304 178 7 21 286 2 292 2.65e-20 94.4
MsG0180002477.01.T01 MTR_4g119990 28.720 289 170 10 9 267 15 297 1.39e-21 98.2
MsG0180002477.01.T01 MTR_4g119990 28.028 289 188 10 386 661 29 310 1.22e-19 92.0
MsG0180002477.01.T01 MTR_1g035470 38.525 122 61 2 21 142 2 109 2.10e-21 91.7
MsG0180002477.01.T01 MTR_1g035470 40.187 107 61 2 388 494 2 105 1.39e-20 89.4
MsG0180002477.01.T01 MTR_6g043890 27.675 271 174 7 13 265 23 289 2.73e-21 96.7
MsG0180002477.01.T01 MTR_6g043890 24.818 274 181 9 386 647 29 289 3.91e-18 87.0
MsG0180002477.01.T01 MTR_3g061330 27.488 211 124 5 386 589 24 212 8.23e-20 90.1
MsG0180002477.01.T01 MTR_3g061330 26.230 244 147 8 9 235 12 239 1.45e-18 86.7
MsG0180002477.01.T01 MTR_1g035520 26.333 300 190 7 388 661 88 382 3.50e-19 90.9
MsG0180002477.01.T01 MTR_1g035520 26.667 300 174 7 21 279 88 382 4.60e-19 90.5
MsG0180002477.01.T01 MTR_1g035520 39.785 93 52 2 298 386 290 382 3.03e-12 69.7
MsG0180002477.01.T01 MTR_3g061290 29.560 159 99 4 371 527 12 159 1.26e-16 79.7
MsG0180002477.01.T01 MTR_3g061290 33.594 128 80 3 9 131 12 139 2.92e-16 78.6
MsG0180002477.01.T01 MTR_5g070440 23.551 276 168 9 14 282 30 269 1.22e-12 69.7
MsG0180002477.01.T01 MTR_4g068320 29.670 182 106 5 7 178 4 173 2.29e-12 70.5
MsG0180002477.01.T01 MTR_7g050640 40.541 111 56 4 3 103 5 115 3.37e-12 64.3
MsG0180002477.01.T01 MTR_7g050640 41.573 89 48 2 386 470 27 115 7.77e-12 63.2
MsG0180002477.01.T01 MTR_3g005420 25.275 273 167 8 14 282 298 537 1.57e-11 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002477.01.T01 AT3G18990 26.154 325 191 12 386 666 20 339 6.01e-18 87.0
MsG0180002477.01.T01 AT3G18990 23.410 346 187 8 7 284 4 339 4.72e-17 84.3
MsG0180002477.01.T01 AT3G18990 26.398 322 188 12 386 663 20 336 9.26e-18 85.9
MsG0180002477.01.T01 AT3G18990 23.615 343 184 8 7 281 4 336 8.66e-17 83.2

Find 147 sgRNAs with CRISPR-Local

Find 420 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACACCGTTTGGAAATTTA+AGG 0.151014 1:+38877940 None:intergenic
CAACACCGTTTGGAAATTTA+AGG 0.151014 1:+38882662 None:intergenic
CTTTCGGATTGGGTCGTTTC+CGG 0.165945 1:+38881666 None:intergenic
TTTGCAAAGCCTTTCAAATA+TGG 0.200041 1:-38877855 MsG0180002477.01.T01:CDS
TTTGCAAAGCCTTTCAAATA+TGG 0.200041 1:-38882577 MsG0180002477.01.T01:CDS
CAAGCTCAAAGGACAATAAA+AGG 0.217300 1:-38882337 MsG0180002477.01.T01:CDS
TATTTCTCCACATATTTCTT+AGG 0.222742 1:+38877990 None:intergenic
CTTTGCGAATGGTTCGTTTC+CGG 0.252300 1:+38876744 None:intergenic
AAATATTGTGGAGTTGAAAA+TGG 0.256652 1:-38881168 MsG0180002477.01.T01:CDS
TAGAATACAATGCTTATAAA+TGG 0.258736 1:+38874945 None:intergenic
GCATAAAACATTCAAGGTTT+TGG 0.259758 1:-38876371 MsG0180002477.01.T01:CDS
TGGAGAGAAATGGTGATATT+TGG 0.267670 1:-38882621 MsG0180002477.01.T01:CDS
TTAATGGAACTGCAACAATA+AGG 0.277244 1:-38876945 MsG0180002477.01.T01:CDS
TATTTCTCCACATATATCTT+AGG 0.281171 1:+38882712 None:intergenic
AGAAATATGTGGAGAAATAT+TGG 0.283749 1:-38877986 MsG0180002477.01.T01:CDS
AATACTTTAGAAATAAATTA+TGG 0.285735 1:-38877771 MsG0180002477.01.T01:CDS
TGGAGAGTAATGGTGATATT+TGG 0.287546 1:-38877899 MsG0180002477.01.T01:CDS
GAAGCATACATTCAAGGTTT+TGG 0.302239 1:-38881338 MsG0180002477.01.T01:CDS
TTTGGAAATTTAAGGAATAT+AGG 0.302976 1:+38877948 None:intergenic
TTTGGAAATTTAAGGAATAT+AGG 0.302976 1:+38882670 None:intergenic
TTACACCAATGGCTATTTCT+TGG 0.306445 1:-38877084 MsG0180002477.01.T01:intron
TTACACCAATGGCTATTTCT+TGG 0.306445 1:-38882006 MsG0180002477.01.T01:intron
AATGCTTATAAATGGATTCT+TGG 0.310444 1:+38874953 None:intergenic
TTAAAGGGACTGCAACAATA+AGG 0.310666 1:-38881867 MsG0180002477.01.T01:CDS
CTCTTAACTTTCAAATTCAT+TGG 0.314459 1:-38882550 MsG0180002477.01.T01:CDS
CATTAACAGCTTCAGATGTT+AGG 0.318603 1:+38877141 None:intergenic
ATAGTAACATTGAATGAAAT+TGG 0.319993 1:+38876775 None:intergenic
TCCTCTCATCAATCAACTTA+AGG 0.325864 1:+38875029 None:intergenic
TCCTCTCATCAATCAACTTA+AGG 0.325864 1:+38876067 None:intergenic
AGATATATGTGGAGAAATAT+TGG 0.326941 1:-38882708 MsG0180002477.01.T01:CDS
CTTGGAGAACAAACAGCTAA+TGG 0.342183 1:+38874971 None:intergenic
TGACAAGAGAAAAGCGAGTA+TGG 0.342734 1:-38877577 MsG0180002477.01.T01:CDS
CTAGTAATTTCTTTCGGATT+GGG 0.342779 1:+38881656 None:intergenic
GTGTTTGATGTTTCAATTGC+AGG 0.344942 1:-38875001 MsG0180002477.01.T01:CDS
TTGGAAATTTAAGGAATATA+GGG 0.346499 1:+38877949 None:intergenic
TTGGAAATTTAAGGAATATA+GGG 0.346499 1:+38882671 None:intergenic
TTAACTTTCAAATTCATTAG+TGG 0.350653 1:-38877825 MsG0180002477.01.T01:CDS
ACATTGGAGGAACGTCTTCT+AGG 0.355062 1:-38876555 MsG0180002477.01.T01:CDS
GAGGTGGTTGGAAAATATTC+AGG 0.364157 1:-38881777 MsG0180002477.01.T01:CDS
TAAAACCTAGTAATTTCTTT+CGG 0.364235 1:+38881650 None:intergenic
CCTAGTAATTTCTTTCGGAT+TGG 0.373001 1:+38881655 None:intergenic
TAATGGAACTGCAACAATAA+GGG 0.376410 1:-38876944 MsG0180002477.01.T01:CDS
CCATTCGCAAAGAAATTACT+AGG 0.386228 1:-38876733 MsG0180002477.01.T01:intron
TAACAAAGAAAGATCTTGTA+TGG 0.389809 1:-38881800 MsG0180002477.01.T01:CDS
GTGTTGGATGGAAAATATTC+AGG 0.394323 1:-38876855 MsG0180002477.01.T01:CDS
CCAATCCGAAAGAAATTACT+AGG 0.396990 1:-38881655 MsG0180002477.01.T01:intron
ATAATTTATTTCTAAAGTAT+TGG 0.398912 1:+38877773 None:intergenic
ATAGTTTATTTCTAAAGTAT+TGG 0.406626 1:+38882495 None:intergenic
TAAAGGGACTGCAACAATAA+GGG 0.414381 1:-38881866 MsG0180002477.01.T01:CDS
AAAGAAGGCAAAGTGGAGAT+TGG 0.415515 1:-38876102 MsG0180002477.01.T01:CDS
AAAGAATACAAAGTGGAGAT+TGG 0.415949 1:-38875064 MsG0180002477.01.T01:CDS
TGGTAAGAGTGTTGCAAAGA+AGG 0.416045 1:-38876581 MsG0180002477.01.T01:CDS
TTTGATGAAGCATACATTCA+AGG 0.419004 1:-38881344 MsG0180002477.01.T01:CDS
AAGATTATCCTATGAAAATC+TGG 0.419859 1:+38882876 None:intergenic
ACAGCTTCAGATTGTGCCAT+TGG 0.421914 1:+38882068 None:intergenic
GAAGTGAGTTTGAGGTATTA+TGG 0.429201 1:-38881823 MsG0180002477.01.T01:CDS
TGGAGAAAATTTATGAAAGA+AGG 0.431214 1:-38876117 MsG0180002477.01.T01:CDS
GATGAAGCATAAAACATTCA+AGG 0.432143 1:-38876377 MsG0180002477.01.T01:CDS
AAATGCCAAAGCAAGCTAAA+AGG 0.432567 1:-38877608 MsG0180002477.01.T01:CDS
AATATTGTGGAGTTGAAAAT+GGG 0.451536 1:-38881167 MsG0180002477.01.T01:CDS
CAAAGTAGCAATGGTGAAGA+AGG 0.457353 1:-38877174 MsG0180002477.01.T01:CDS
CAGCTTCAGATTGTGCCATT+GGG 0.460205 1:+38882069 None:intergenic
AAAGAATGCAATGTGGAGAT+TGG 0.464528 1:-38881062 MsG0180002477.01.T01:CDS
CAAAGTGGCCATGGTGAAGA+AGG 0.465563 1:-38882102 MsG0180002477.01.T01:CDS
TGTTCTCTTGAAAACTCAAA+TGG 0.468009 1:+38881901 None:intergenic
GATGACAAGGTTATAAGAAA+GGG 0.472513 1:-38876612 MsG0180002477.01.T01:intron
TGTCATTATAACTTCAAAAG+AGG 0.475259 1:+38877112 None:intergenic
TGTCATTATAACTTCAAAAG+AGG 0.475259 1:+38882034 None:intergenic
TTAACTTTCAAATTCATTGG+TGG 0.475675 1:-38882547 MsG0180002477.01.T01:CDS
CGATGACAAGGTTATAAGAA+AGG 0.476820 1:-38876613 MsG0180002477.01.T01:intron
GAGGTGAGTTTGAGATATTA+TGG 0.477793 1:-38876901 MsG0180002477.01.T01:CDS
CCTAGTAATTTCTTTGCGAA+TGG 0.482285 1:+38876733 None:intergenic
GGTGCTAAAGCCACTGAAGA+AGG 0.489506 1:-38882448 MsG0180002477.01.T01:CDS
GGAGTGTGGAAGTGAGTTTG+AGG 0.490380 1:-38881831 MsG0180002477.01.T01:CDS
ATGAGAGTATTCGTGGCTGC+AGG 0.493889 1:-38881112 MsG0180002477.01.T01:CDS
CCAAAGGAGTTTATGAAAAG+AGG 0.496159 1:-38881200 MsG0180002477.01.T01:CDS
CTCTTCATGACTTTCTTCTG+TGG 0.498976 1:+38877668 None:intergenic
TGTGGCTGCAGGTTCAGTAA+AGG 0.501542 1:-38875103 MsG0180002477.01.T01:intron
GTCATTATAACTTCAAAAGA+GGG 0.507540 1:+38877113 None:intergenic
GTCATTATAACTTCAAAAGA+GGG 0.507540 1:+38882035 None:intergenic
CGTGGCTGCAGGTTCAGTAA+AGG 0.507598 1:-38881101 MsG0180002477.01.T01:CDS
AATGTTACTATTACTCGTGC+CGG 0.509303 1:-38876763 MsG0180002477.01.T01:CDS
CAATAAGGGTTGGTAAAGAA+AGG 0.509993 1:-38881852 MsG0180002477.01.T01:CDS
ACCACCCAACCAAAATTCTC+AGG 0.510316 1:-38877546 MsG0180002477.01.T01:intron
AATTATTATGAGAGTATTCG+TGG 0.512630 1:-38881119 MsG0180002477.01.T01:CDS
ACTTTCTTTACCTTCTTCAG+TGG 0.514754 1:+38882438 None:intergenic
AAGAGATATCCATATTTGAA+AGG 0.520085 1:+38877846 None:intergenic
AAGAGATATCCATATTTGAA+AGG 0.520085 1:+38882568 None:intergenic
ATTGTCACTATTACTCGTGC+CGG 0.525079 1:-38881685 MsG0180002477.01.T01:CDS
AATATCAAATCTGTTGATGA+AGG 0.530362 1:-38877747 MsG0180002477.01.T01:CDS
AAGCTCAAAGGACAATAAAA+GGG 0.530769 1:-38882336 MsG0180002477.01.T01:CDS
AGGATGTCATGAAAATATTG+TGG 0.531604 1:-38881180 MsG0180002477.01.T01:CDS
ATAGTGACAATGAATGAAAA+CGG 0.533216 1:+38881697 None:intergenic
ATATTCCTTAAATTTCCAAA+CGG 0.536219 1:-38877945 MsG0180002477.01.T01:CDS
ATATTCCTTAAATTTCCAAA+CGG 0.536219 1:-38882667 MsG0180002477.01.T01:CDS
TGTGGCTGCAGATTCAGTAA+AGG 0.542328 1:-38876141 MsG0180002477.01.T01:intron
AGCTGAAGACACAGAAGAAG+AGG 0.546039 1:-38877724 MsG0180002477.01.T01:CDS
GATCTTGTATGGGAGGTGGT+TGG 0.547438 1:-38881789 MsG0180002477.01.T01:CDS
CAATAAGGGTTGGTAATGAA+AGG 0.551596 1:-38876930 MsG0180002477.01.T01:CDS
AAAGTATAATTTGCAAGTTG+AGG 0.553539 1:-38881752 MsG0180002477.01.T01:CDS
TGTTCTCTTGAAAACTCACT+TGG 0.555107 1:+38876979 None:intergenic
GTAAATTTGAGATGATTCGA+CGG 0.557247 1:-38876801 MsG0180002477.01.T01:CDS
AAAGGGAAGAGAAAATTCTC+AGG 0.557828 1:-38882319 MsG0180002477.01.T01:intron
TGAAAATGGGGAGGAAGTCA+TGG 0.563749 1:-38881154 MsG0180002477.01.T01:CDS
AATGTGGTATGGGTGTTGGA+TGG 0.570873 1:-38876867 MsG0180002477.01.T01:CDS
GAAAGATCTTGTATGGGAGG+TGG 0.571003 1:-38881793 MsG0180002477.01.T01:CDS
TTTGGTGAAGAACACAGCCC+CGG 0.573521 1:-38881320 MsG0180002477.01.T01:intron
GCTGCAGATTCAGTAAAGGT+TGG 0.573667 1:-38876137 MsG0180002477.01.T01:intron
GCTGCAGGTTCAGTAAAGGT+TGG 0.575963 1:-38875099 MsG0180002477.01.T01:intron
GGAACTGCAACAATAAGGGT+TGG 0.581562 1:-38876940 MsG0180002477.01.T01:CDS
AACAAAGAAAGATCTTGTAT+GGG 0.582045 1:-38881799 MsG0180002477.01.T01:CDS
AGGTAGTAACAAAGTGGCCA+TGG 0.582904 1:-38882111 MsG0180002477.01.T01:CDS
TGATGACAGTTCAGATGAGG+TGG 0.583984 1:-38877631 MsG0180002477.01.T01:CDS
GAGGGTTCCTAAGATATATG+TGG 0.586451 1:-38882719 MsG0180002477.01.T01:CDS
ACTTACCAAGAAATAGCCAT+TGG 0.587587 1:+38877079 None:intergenic
ACTTACCAAGAAATAGCCAT+TGG 0.587587 1:+38882001 None:intergenic
GTAAATTTGAGATGATTCAA+CGG 0.588165 1:-38881723 MsG0180002477.01.T01:CDS
GGGACTGCAACAATAAGGGT+TGG 0.589089 1:-38881862 MsG0180002477.01.T01:CDS
GCTGCAGGTTCAGTAAAGGT+TGG 0.590118 1:-38881097 MsG0180002477.01.T01:CDS
GTATTTGCAGAGTGCACCAA+AGG 0.590998 1:-38881216 MsG0180002477.01.T01:intron
GAGGGTTCCTAAGAAATATG+TGG 0.594786 1:-38877997 MsG0180002477.01.T01:CDS
ATTTATGAAAGAAGGCAAAG+TGG 0.595070 1:-38876109 MsG0180002477.01.T01:CDS
AAAGAAAGATCTTGTATGGG+AGG 0.599987 1:-38881796 MsG0180002477.01.T01:CDS
TCCTTAAGTTGATTGATGAG+AGG 0.601248 1:-38875030 MsG0180002477.01.T01:CDS
TCCTTAAGTTGATTGATGAG+AGG 0.601248 1:-38876068 MsG0180002477.01.T01:CDS
GGTTGGTAAAGAAAGGAGTG+TGG 0.602290 1:-38881845 MsG0180002477.01.T01:CDS
AGGTAGTAACAAAGTAGCAA+TGG 0.603454 1:-38877183 MsG0180002477.01.T01:CDS
AGGTGGTTGGAAAATATTCA+GGG 0.606836 1:-38881776 MsG0180002477.01.T01:CDS
ATTCATGAAAGAATACAAAG+TGG 0.608699 1:-38875071 MsG0180002477.01.T01:CDS
ATGACACAATCTTACACCAA+TGG 0.609025 1:-38877095 MsG0180002477.01.T01:CDS
ATGACACAATCTTACACCAA+TGG 0.609025 1:-38882017 MsG0180002477.01.T01:CDS
GGTTGGTAATGAAAGGAGTG+TGG 0.615653 1:-38876923 MsG0180002477.01.T01:CDS
GCAAAGAAGGAACACATTGG+AGG 0.617117 1:-38876568 MsG0180002477.01.T01:CDS
TATGTGGAGAAATATTGGAA+AGG 0.617787 1:-38877981 MsG0180002477.01.T01:CDS
TATGTGGAGAAATATTGGAA+AGG 0.617787 1:-38882703 MsG0180002477.01.T01:CDS
AAATGTCAAAGCAAGCTCAA+AGG 0.625671 1:-38882348 MsG0180002477.01.T01:CDS
AAGTGATGAAGAGAGTGATG+AGG 0.629681 1:-38882374 MsG0180002477.01.T01:CDS
TTGTGGAGTTGAAAATGGGG+AGG 0.632079 1:-38881163 MsG0180002477.01.T01:CDS
ATGACAAGGTTATAAGAAAG+GGG 0.638628 1:-38876611 MsG0180002477.01.T01:intron
GCTGAAGACACAGAAGAAGA+GGG 0.643743 1:-38877723 MsG0180002477.01.T01:CDS
CTTTACAGGTAGTAACAAAG+TGG 0.648804 1:-38882117 MsG0180002477.01.T01:intron
AAGTGATGACAGTTCAGATG+AGG 0.649994 1:-38877634 MsG0180002477.01.T01:CDS
TGGTAATGAAAGGAGTGTGG+AGG 0.650568 1:-38876920 MsG0180002477.01.T01:CDS
GTTGCAAAGAAGGAACACAT+TGG 0.671217 1:-38876571 MsG0180002477.01.T01:CDS
GAAGGCTAGAAAATACCCAA+TGG 0.687317 1:-38882084 MsG0180002477.01.T01:CDS
ATATTGTGGAGTTGAAAATG+GGG 0.692849 1:-38881166 MsG0180002477.01.T01:CDS
ATTCATGAAAGAATGCAATG+TGG 0.699756 1:-38881069 MsG0180002477.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAATATCCAAATTAA+AGG + Chr1:38881982-38882001 None:intergenic 10.0%
!! TAAACATATAATATATAGTT+AGG + Chr1:38876364-38876383 None:intergenic 10.0%
!!! AATACTTTAGAAATAAATTA+TGG - Chr1:38880081-38880100 MsG0180002477.01.T01:intron 10.0%
!!! ATAATTTATTTCTAAAGTAT+TGG + Chr1:38880082-38880101 None:intergenic 10.0%
!!! ATACTTCAATTATTTTTTAA+GGG + Chr1:38879219-38879238 None:intergenic 10.0%
!!! TATAAAAATATGTGATTTTT+TGG - Chr1:38875634-38875653 MsG0180002477.01.T01:intron 10.0%
!!! TGTATGTTATAATTTTTTTA+TGG - Chr1:38876254-38876273 MsG0180002477.01.T01:intron 10.0%
!!! TTATATTTTCAATTATTTTC+AGG - Chr1:38882453-38882472 MsG0180002477.01.T01:CDS 10.0%
!!! TTTTTTTATATAGTTTATGT+TGG + Chr1:38878899-38878918 None:intergenic 10.0%
!! TACAAATATAAACTTCATTT+AGG + Chr1:38877408-38877427 None:intergenic 15.0%
!!! AAAAATCTTACTTATTTTAC+TGG + Chr1:38877175-38877194 None:intergenic 15.0%
!!! AAATATGCGATTTTTTTTTT+TGG - Chr1:38880522-38880541 MsG0180002477.01.T01:intron 15.0%
!!! ATAGTTTATTTCTAAAGTAT+TGG + Chr1:38875360-38875379 None:intergenic 15.0%
!!! ATATTTGGTTTCAAAAAAAT+TGG - Chr1:38879968-38879987 MsG0180002477.01.T01:intron 15.0%
!!! ATTAAGTTCTGATTTAATTA+AGG - Chr1:38877367-38877386 MsG0180002477.01.T01:intron 15.0%
!!! CAAATAACTCTAAAATTTTT+GGG - Chr1:38876419-38876438 MsG0180002477.01.T01:intron 15.0%
!!! GATACTTCAATTATTTTTTA+AGG + Chr1:38879220-38879239 None:intergenic 15.0%
!!! TATTTGGTTTCAAAAAAATT+GGG - Chr1:38879969-38879988 MsG0180002477.01.T01:intron 15.0%
!!! TATTTTAAGGTTAAGATATA+TGG - Chr1:38875332-38875351 MsG0180002477.01.T01:intron 15.0%
!!! TCAAATAACTCTAAAATTTT+TGG - Chr1:38876418-38876437 MsG0180002477.01.T01:intron 15.0%
!!! TGAATTATTTAATTTACACT+AGG - Chr1:38879007-38879026 MsG0180002477.01.T01:intron 15.0%
!!! TGTTGAACAAAAAATATTTT+GGG - Chr1:38875208-38875227 MsG0180002477.01.T01:intron 15.0%
!!! TTATAATTTTTTTATGGACA+AGG - Chr1:38876260-38876279 MsG0180002477.01.T01:intron 15.0%
!! AAATAATCTCTAAACTTTAC+AGG - Chr1:38875721-38875740 MsG0180002477.01.T01:intron 20.0%
!! AAATATTGAGGAATTGAAAA+TGG - Chr1:38881644-38881663 MsG0180002477.01.T01:intron 20.0%
!! AACAATGATACATAAACAAT+AGG + Chr1:38879793-38879812 None:intergenic 20.0%
!! AATATTGAGGAATTGAAAAT+GGG - Chr1:38881645-38881664 MsG0180002477.01.T01:intron 20.0%
!! ACAATGATACATAAACAATA+GGG + Chr1:38879792-38879811 None:intergenic 20.0%
!! ATACAATGCTTAAAATTGAA+AGG + Chr1:38876940-38876959 None:intergenic 20.0%
!! ATAGTAACATTGAATGAAAT+TGG + Chr1:38881080-38881099 None:intergenic 20.0%
!! ATATTCCTTAAATTTCCAAA+CGG - Chr1:38875185-38875204 MsG0180002477.01.T01:intron 20.0%
!! ATCAATAGGTAAATTACATA+AGG + Chr1:38877004-38877023 None:intergenic 20.0%
!! ATTTATGAATTTCTTAACCA+TGG - Chr1:38877263-38877282 MsG0180002477.01.T01:intron 20.0%
!! GTGTTTAATGTTTAAATTGT+AGG - Chr1:38881813-38881832 MsG0180002477.01.T01:CDS 20.0%
!! GTTACAAACATAAAACTTAA+AGG - Chr1:38877811-38877830 MsG0180002477.01.T01:CDS 20.0%
!! TAAAACCTAGTAATTTCTTT+CGG + Chr1:38876205-38876224 None:intergenic 20.0%
!! TACAATGCTTAAAATTGAAA+GGG + Chr1:38876939-38876958 None:intergenic 20.0%
!! TACATAAATCATGAAAGAAA+TGG + Chr1:38878216-38878235 None:intergenic 20.0%
!! TTAACTTTCAAATTCATTAG+TGG - Chr1:38880027-38880046 MsG0180002477.01.T01:intron 20.0%
!! TTCTGATTTAATTAAGGATT+AGG - Chr1:38877373-38877392 MsG0180002477.01.T01:intron 20.0%
!! TTGGAAATTTAAGGAATATA+GGG + Chr1:38875184-38875203 None:intergenic 20.0%
!! TTTATTGCTGAAGAAATAAT+AGG - Chr1:38878614-38878633 MsG0180002477.01.T01:intron 20.0%
!! TTTGGAAATTTAAGGAATAT+AGG + Chr1:38875185-38875204 None:intergenic 20.0%
!!! AAAATATGTGATTTTTTGGA+AGG - Chr1:38875638-38875657 MsG0180002477.01.T01:intron 20.0%
!!! AACACTTGAAAGATTTTAAA+GGG - Chr1:38875970-38875989 MsG0180002477.01.T01:intron 20.0%
!!! AATATCAAATCAGTTTTTGA+AGG - Chr1:38875383-38875402 MsG0180002477.01.T01:intron 20.0%
!!! ATATTTGGTTTCAAAAAAAC+TGG - Chr1:38875246-38875265 MsG0180002477.01.T01:intron 20.0%
!!! GAAGAATAACTTTGTAATTT+TGG - Chr1:38878766-38878785 MsG0180002477.01.T01:intron 20.0%
!!! GTGTTGAACAAAAAATATTT+TGG - Chr1:38875207-38875226 MsG0180002477.01.T01:intron 20.0%
!!! TATGAGAATGATCTTTTTTT+TGG - Chr1:38882144-38882163 MsG0180002477.01.T01:intron 20.0%
!!! TATTCAAGTTTTGAAATAAG+AGG - Chr1:38882620-38882639 MsG0180002477.01.T01:CDS 20.0%
!!! TATTTGGTTTCAAAAAAACT+GGG - Chr1:38875247-38875266 MsG0180002477.01.T01:intron 20.0%
!!! TATTTTAAGGTGAAGATATT+TGG - Chr1:38880054-38880073 MsG0180002477.01.T01:intron 20.0%
!!! TATTTTCAATTATTTTCAGG+AGG - Chr1:38882456-38882475 MsG0180002477.01.T01:CDS 20.0%
!!! TCAATTATTTTTTAAGGGTA+AGG + Chr1:38879214-38879233 None:intergenic 20.0%
!!! TTCAAAAACTGATTTGATAT+TGG + Chr1:38875384-38875403 None:intergenic 20.0%
!!! TTTTATGTAATTAATCCTAC+CGG + Chr1:38876554-38876573 None:intergenic 20.0%
!!! TTTTATTTAATTAATCCGAC+CGG + Chr1:38881514-38881533 None:intergenic 20.0%
! AAATATTGTGGAGTTGAAAA+TGG - Chr1:38876684-38876703 MsG0180002477.01.T01:intron 25.0%
! AAATTGAAGAACTACAAATC+AGG + Chr1:38878372-38878391 None:intergenic 25.0%
! AACAAAGAAAGATCTTGTAT+GGG - Chr1:38876053-38876072 MsG0180002477.01.T01:intron 25.0%
! AAGAGATATCCATATTTGAA+AGG + Chr1:38875287-38875306 None:intergenic 25.0%
! AAGATTATCCTATGAAAATC+TGG + Chr1:38874979-38874998 None:intergenic 25.0%
! AATATTGTGGAGTTGAAAAT+GGG - Chr1:38876685-38876704 MsG0180002477.01.T01:intron 25.0%
! AATCCAATAGGTAAATCAAT+AGG + Chr1:38877018-38877037 None:intergenic 25.0%
! AATTATTATCAGAGTCTTTG+TGG - Chr1:38881693-38881712 MsG0180002477.01.T01:CDS 25.0%
! AATTGATTGCATTTCAATCA+AGG - Chr1:38879346-38879365 MsG0180002477.01.T01:intron 25.0%
! AGAAAACCTTTGAATTACTT+TGG - Chr1:38879062-38879081 MsG0180002477.01.T01:intron 25.0%
! AGAAATATGTGGAGAAATAT+TGG - Chr1:38879866-38879885 MsG0180002477.01.T01:intron 25.0%
! AGAATGACATGATTAAGAAA+TGG - Chr1:38882074-38882093 MsG0180002477.01.T01:CDS 25.0%
! AGATATATGTGGAGAAATAT+TGG - Chr1:38875144-38875163 MsG0180002477.01.T01:intron 25.0%
! AGTCAATACAAAATAACACT+AGG + Chr1:38882583-38882602 None:intergenic 25.0%
! ATAAGAGATGAAACAGTTAT+TGG + Chr1:38881845-38881864 None:intergenic 25.0%
! ATAGTGACAATGAATGAAAA+CGG + Chr1:38876158-38876177 None:intergenic 25.0%
! ATATCTACTAAACCATGATT+TGG - Chr1:38875917-38875936 MsG0180002477.01.T01:intron 25.0%
! ATATTGAGGAATTGAAAATG+GGG - Chr1:38881646-38881665 MsG0180002477.01.T01:intron 25.0%
! ATCTGTTACCTAAAACTTAA+AGG + Chr1:38877609-38877628 None:intergenic 25.0%
! ATGTGAAATATACAGTTGTT+TGG - Chr1:38882205-38882224 MsG0180002477.01.T01:intron 25.0%
! ATTCATGAAAGAATACAAAG+TGG - Chr1:38882781-38882800 MsG0180002477.01.T01:intron 25.0%
! ATTGAAATGCAATCAATTTG+AGG + Chr1:38879344-38879363 None:intergenic 25.0%
! CTCATAGTAATTAACTTTCA+AGG + Chr1:38882723-38882742 None:intergenic 25.0%
! CTCTTAACTTTCAAATTCAT+TGG - Chr1:38875302-38875321 MsG0180002477.01.T01:intron 25.0%
! CTGTTACCTAAAAAACTTAA+AGG - Chr1:38877780-38877799 MsG0180002477.01.T01:CDS 25.0%
! CTGTTACCTAAAAAACTTAA+AGG + Chr1:38877799-38877780 None:intergenic 25.0%
! GAAAGCTCATTATTATAAAG+TGG - Chr1:38879037-38879056 MsG0180002477.01.T01:intron 25.0%
! GCATTCAATTAAAATCCAAT+AGG + Chr1:38877030-38877049 None:intergenic 25.0%
! GTCATCGACAAAATAAATAA+AGG + Chr1:38881226-38881245 None:intergenic 25.0%
! GTCATTATAACTTCAAAAGA+GGG + Chr1:38875820-38875839 None:intergenic 25.0%
! GTTCAATGGATATTATAGTT+AGG - Chr1:38878636-38878655 MsG0180002477.01.T01:intron 25.0%
! TAAAAAAAGAAACTGAATCC+TGG + Chr1:38876333-38876352 None:intergenic 25.0%
! TAACAAAGAAAGATCTTGTA+TGG - Chr1:38876052-38876071 MsG0180002477.01.T01:intron 25.0%
! TATTTCTCCACATATATCTT+AGG + Chr1:38875143-38875162 None:intergenic 25.0%
! TATTTCTCCACATATTTCTT+AGG + Chr1:38879865-38879884 None:intergenic 25.0%
! TCATTGAAAGGGAAAAAATT+GGG + Chr1:38879314-38879333 None:intergenic 25.0%
! TGAAGAAATAATAGGTTCAA+TGG - Chr1:38878622-38878641 MsG0180002477.01.T01:intron 25.0%
! TGCATGAAAACTATATATGT+TGG + Chr1:38877067-38877086 None:intergenic 25.0%
! TGGAGAAAATTTATGAAAGA+AGG - Chr1:38881735-38881754 MsG0180002477.01.T01:CDS 25.0%
! TGTCATTATAACTTCAAAAG+AGG + Chr1:38875821-38875840 None:intergenic 25.0%
! TTAACTTTCAAATTCATTGG+TGG - Chr1:38875305-38875324 MsG0180002477.01.T01:intron 25.0%
! TTCATTGAAAGGGAAAAAAT+TGG + Chr1:38879315-38879334 None:intergenic 25.0%
! TTGCTTACTAGTAAATGAAA+AGG + Chr1:38878584-38878603 None:intergenic 25.0%
! TTTACTAGTAAGCAATTGTT+TGG - Chr1:38878589-38878608 MsG0180002477.01.T01:intron 25.0%
! TTTATGTAATTAATCCTACC+GGG + Chr1:38876553-38876572 None:intergenic 25.0%
! TTTGAGTGTTATAAAGTTGA+TGG + Chr1:38879603-38879622 None:intergenic 25.0%
!! AAAGTATAATTTGCAAGTTG+AGG - Chr1:38876100-38876119 MsG0180002477.01.T01:CDS 25.0%
!! AACATGATTTCAGAAAGTAT+TGG + Chr1:38879656-38879675 None:intergenic 25.0%
!! AATATCAAATCTGTTGATGA+AGG - Chr1:38880105-38880124 MsG0180002477.01.T01:intron 25.0%
!! ATTTAATTTACACTAGGACT+AGG - Chr1:38879013-38879032 MsG0180002477.01.T01:intron 25.0%
!! CCAAAAGAAAATTTTCTTGA+GGG - Chr1:38881326-38881345 MsG0180002477.01.T01:CDS 25.0%
!! CTGAAACTTTAGAAACTTAA+AGG - Chr1:38877751-38877770 MsG0180002477.01.T01:CDS 25.0%
!! GAACACTTGAAAGATTTTAA+AGG - Chr1:38875969-38875988 MsG0180002477.01.T01:intron 25.0%
!! GAACACTTGAAAGATTTTAA+TGG - Chr1:38875969-38875988 MsG0180002477.01.T01:intron 25.0%
!! GTAAATTTGAGATGATTCAA+CGG - Chr1:38876129-38876148 MsG0180002477.01.T01:CDS 25.0%
!! GTGATTTTTCTCTCTTTTTT+TGG - Chr1:38880328-38880347 MsG0180002477.01.T01:intron 25.0%
!! GTTTTATGTTTGTAACAGAT+AGG + Chr1:38877807-38877826 None:intergenic 25.0%
!! TCCAAAAGAAAATTTTCTTG+AGG - Chr1:38881325-38881344 MsG0180002477.01.T01:CDS 25.0%
!!! AAGTTTCTAAAGTTTCAGAT+AGG + Chr1:38877749-38877768 None:intergenic 25.0%
!!! AAGTTTTTTAGGTAACAGAT+AGG - Chr1:38877638-38877657 MsG0180002477.01.T01:CDS 25.0%
!!! AAGTTTTTTAGGTAACAGAT+AGG + Chr1:38877657-38877638 None:intergenic 25.0%
!!! AATTATTATGAGAGTATTCG+TGG - Chr1:38876733-38876752 MsG0180002477.01.T01:intron 25.0%
!!! ACATGATTTCAGAAAGTATT+GGG + Chr1:38879655-38879674 None:intergenic 25.0%
!!! ATAGGTCCTTTAAGTTTTTT+AGG - Chr1:38877627-38877646 MsG0180002477.01.T01:CDS 25.0%
!!! ATAGGTCCTTTAAGTTTTTT+AGG + Chr1:38877646-38877627 None:intergenic 25.0%
!!! ATGCGATTTTTTTTTTTGGT+AGG - Chr1:38880526-38880545 MsG0180002477.01.T01:intron 25.0%
!!! CATTAGTGGATCATATTTTA+AGG - Chr1:38880041-38880060 MsG0180002477.01.T01:intron 25.0%
!!! CTTTTAATTTTCGACAAAAG+TGG + Chr1:38882240-38882259 None:intergenic 25.0%
!!! TAAAGCAAAGTTACTTTTGT+AGG + Chr1:38879242-38879261 None:intergenic 25.0%
!!! TACTTTTAAGAGTTATGCAA+TGG - Chr1:38880416-38880435 MsG0180002477.01.T01:intron 25.0%
!!! TATTTATTTTGTCGATGACA+AGG - Chr1:38881227-38881246 MsG0180002477.01.T01:intron 25.0%
!!! TCTCTTTTTTTGGTAGATTT+AGG - Chr1:38880338-38880357 MsG0180002477.01.T01:intron 25.0%
!!! TGAACAAAAAATATTTTGGG+TGG - Chr1:38875211-38875230 MsG0180002477.01.T01:intron 25.0%
!!! TTAAGTTTTAGGTAACAGAT+AGG - Chr1:38877609-38877628 MsG0180002477.01.T01:CDS 25.0%
!!! TTAATCTGCCACTTTATATA+AGG + Chr1:38882317-38882336 None:intergenic 25.0%
!!! TTACCTATTGATTTACCTAT+TGG - Chr1:38877012-38877031 MsG0180002477.01.T01:intron 25.0%
!!! TTGTTTTTGAACTGGATTTT+GGG - Chr1:38878291-38878310 MsG0180002477.01.T01:intron 25.0%
!!! TTTGTTTTTGAACTGGATTT+TGG - Chr1:38878290-38878309 MsG0180002477.01.T01:intron 25.0%
AAAAGAGGATGAAGAAACTA+CGG + Chr1:38877972-38877991 None:intergenic 30.0%
AAAGAATACAAAGTGGAGAT+TGG - Chr1:38882788-38882807 MsG0180002477.01.T01:intron 30.0%
AAAGGGAAAAAATTGGGATA+TGG + Chr1:38879308-38879327 None:intergenic 30.0%
AAATAGTTAATGCCTAAACC+TGG - Chr1:38880645-38880664 MsG0180002477.01.T01:intron 30.0%
AAGCTCAAAGGACAATAAAA+GGG - Chr1:38875516-38875535 MsG0180002477.01.T01:intron 30.0%
AATAATATGCAGTTGTGCTA+AGG - Chr1:38878918-38878937 MsG0180002477.01.T01:intron 30.0%
AATTACTATGAGAGTCTTTG+TGG - Chr1:38882731-38882750 MsG0180002477.01.T01:intron 30.0%
AGGATGTCATGAAAATATTG+AGG - Chr1:38876672-38876691 MsG0180002477.01.T01:intron 30.0%
AGGATGTCATGAAAATATTG+TGG - Chr1:38876672-38876691 MsG0180002477.01.T01:intron 30.0%
AGTTGTGATGATTCACAAAT+AGG - Chr1:38878862-38878881 MsG0180002477.01.T01:intron 30.0%
AGTTTAGGCTTGTAAATCTA+AGG - Chr1:38875558-38875577 MsG0180002477.01.T01:intron 30.0%
ATAAACAAATGTGTGAGATG+AGG + Chr1:38879415-38879434 None:intergenic 30.0%
ATATTGTGGAGTTGAAAATG+GGG - Chr1:38876686-38876705 MsG0180002477.01.T01:intron 30.0%
ATGACAAGGTTATAAGAAAG+GGG - Chr1:38881241-38881260 MsG0180002477.01.T01:intron 30.0%
ATGGACAAGGTTATAAGAAA+GGG - Chr1:38876273-38876292 MsG0180002477.01.T01:intron 30.0%
ATTCATGAAAGAATGCAATG+TGG - Chr1:38876783-38876802 MsG0180002477.01.T01:CDS 30.0%
ATTGATGAGCTGATCATAAT+AGG - Chr1:38877093-38877112 MsG0180002477.01.T01:CDS 30.0%
ATTTATGAAAGAAGGCAAAG+TGG - Chr1:38881743-38881762 MsG0180002477.01.T01:CDS 30.0%
CTAGTAATTTCTTTCGGATT+GGG + Chr1:38876199-38876218 None:intergenic 30.0%
CTAGTTACTAGTACTTTCAT+GGG + Chr1:38876885-38876904 None:intergenic 30.0%
CTGAAACCTTAGAAACTTAA+AGG + Chr1:38877665-38877684 None:intergenic 30.0%
CTGAATTTCTTTATTGCAGA+GGG - Chr1:38875115-38875134 MsG0180002477.01.T01:intron 30.0%
GAAACAAACTCGAAACTTAA+AGG + Chr1:38877694-38877713 None:intergenic 30.0%
GAGGTTTCATTTCATTGAAA+GGG + Chr1:38879325-38879344 None:intergenic 30.0%
GATGAAGCATAAAACATTCA+AGG - Chr1:38881475-38881494 MsG0180002477.01.T01:intron 30.0%
GATGACAAGGTTATAAGAAA+GGG - Chr1:38881240-38881259 MsG0180002477.01.T01:intron 30.0%
GTGTTTGATGTTTCAATTGT+AGG - Chr1:38876853-38876872 MsG0180002477.01.T01:CDS 30.0%
GTTACAAACGTGAAACTTAA+AGG + Chr1:38877578-38877597 None:intergenic 30.0%
TAATGGAACTGCAACAATAA+GGG - Chr1:38880908-38880927 MsG0180002477.01.T01:intron 30.0%
TATGGACAAGGTTATAAGAA+AGG - Chr1:38876272-38876291 MsG0180002477.01.T01:intron 30.0%
TATGTGGAGAAATATTGGAA+AGG - Chr1:38875149-38875168 MsG0180002477.01.T01:intron 30.0%
TATTGTGACCTCATATGAAA+TGG - Chr1:38876967-38876986 MsG0180002477.01.T01:CDS 30.0%
TCAAATAAATAGAGCTGCAA+TGG - Chr1:38878064-38878083 MsG0180002477.01.T01:intron 30.0%
TCTAGTTACTAGTACTTTCA+TGG + Chr1:38876886-38876905 None:intergenic 30.0%
TCTGAATTTCTTTATTGCAG+AGG - Chr1:38875114-38875133 MsG0180002477.01.T01:intron 30.0%
TGAGGTTTCATTTCATTGAA+AGG + Chr1:38879326-38879345 None:intergenic 30.0%
TGTTCTCTTGAAAACTCAAA+TGG + Chr1:38875954-38875973 None:intergenic 30.0%
TTAATCAATAACCGTAAGCA+CGG + Chr1:38877151-38877170 None:intergenic 30.0%
TTAATGGAACTGCAACAATA+AGG - Chr1:38880907-38880926 MsG0180002477.01.T01:intron 30.0%
TTATGTAATTAATCCTACCG+GGG + Chr1:38876552-38876571 None:intergenic 30.0%
TTCAAAACTTGAATATCGAC+CGG + Chr1:38882615-38882634 None:intergenic 30.0%
TTTGAAAACGAGTGATCAAT+CGG + Chr1:38878049-38878068 None:intergenic 30.0%
TTTGATGAAGCATACATTCA+AGG - Chr1:38876508-38876527 MsG0180002477.01.T01:intron 30.0%
TTTGCAAAGCCTTTCAAATA+TGG - Chr1:38875275-38875294 MsG0180002477.01.T01:intron 30.0%
! AACATGTTCCAGATTTTCAT+AGG - Chr1:38874968-38874987 MsG0180002477.01.T01:CDS 30.0%
! AATACATGTTTGAAGTTCGA+TGG + Chr1:38878972-38878991 None:intergenic 30.0%
! ACTTTCTTCATCTTCTTTTG+TGG + Chr1:38875462-38875481 None:intergenic 30.0%
! ATAGGTCCTTTAAGTTTCTA+AGG - Chr1:38877656-38877675 MsG0180002477.01.T01:CDS 30.0%
! CCCTCAAGAAAATTTTCTTT+TGG + Chr1:38881329-38881348 None:intergenic 30.0%
! CTTTCTTCATCTTCTTTTGT+GGG + Chr1:38875461-38875480 None:intergenic 30.0%
! GAAAAATCACCTGAGAATTT+TGG + Chr1:38880318-38880337 None:intergenic 30.0%
! GCATAAAACATTCAAGGTTT+TGG - Chr1:38881481-38881500 MsG0180002477.01.T01:intron 30.0%
! GTAAATTTGAGATGATTCGA+CGG - Chr1:38881051-38881070 MsG0180002477.01.T01:CDS 30.0%
! GTTGCAATTTTATGTCTGAA+AGG - Chr1:38880442-38880461 MsG0180002477.01.T01:intron 30.0%
! TAAACCATGATTTGAAACAG+TGG - Chr1:38880847-38880866 MsG0180002477.01.T01:intron 30.0%
! TGCTAAGGCTTTAATATATC+AGG - Chr1:38878933-38878952 MsG0180002477.01.T01:intron 30.0%
! TTCATCTCTTATTTAAGCCT+AGG - Chr1:38881853-38881872 MsG0180002477.01.T01:CDS 30.0%
! TTTTATCTCTCGTTTTCGAT+TGG - Chr1:38877534-38877553 MsG0180002477.01.T01:intron 30.0%
!! AGATAGGTCCTTTAAGTTTT+AGG - Chr1:38877598-38877617 MsG0180002477.01.T01:CDS 30.0%
!! CATTGGTGGATCATATTTTA+AGG - Chr1:38875319-38875338 MsG0180002477.01.T01:intron 30.0%
!! GTGTTATAAAGTTGATGGAT+TGG + Chr1:38879598-38879617 None:intergenic 30.0%
!!! ACTGTTTTTGAACTGGATTT+TGG - Chr1:38878404-38878423 MsG0180002477.01.T01:intron 30.0%
!!! ATGTGATACTGTTTTTGAAC+TGG - Chr1:38878397-38878416 MsG0180002477.01.T01:intron 30.0%
!!! ATTTTTTGTTCAACACCGTT+TGG + Chr1:38875203-38875222 None:intergenic 30.0%
!!! CTGAATTTTTTTGTTGCAGA+GGG - Chr1:38879837-38879856 MsG0180002477.01.T01:intron 30.0%
!!! CTGTTTTTGAACTGGATTTT+GGG - Chr1:38878405-38878424 MsG0180002477.01.T01:intron 30.0%
!!! GATACTGTTTGTTTTTGAAC+TGG - Chr1:38878283-38878302 MsG0180002477.01.T01:intron 30.0%
!!! TCTGAATTTTTTTGTTGCAG+AGG - Chr1:38879836-38879855 MsG0180002477.01.T01:intron 30.0%
!!! TGACTGCTTGTAATGTTTTT+TGG - Chr1:38882003-38882022 MsG0180002477.01.T01:intron 30.0%
AAAAAATGTGGTATGGGTGT+TGG - Chr1:38880981-38881000 MsG0180002477.01.T01:intron 35.0%
AAAGAAAGATCTTGTATGGG+AGG - Chr1:38876056-38876075 MsG0180002477.01.T01:intron 35.0%
AAAGAATGCAATGTGGAGAT+TGG - Chr1:38876790-38876809 MsG0180002477.01.T01:CDS 35.0%
AAAGGGAAGAGAAAATTCTC+AGG - Chr1:38875533-38875552 MsG0180002477.01.T01:intron 35.0%
AAATGCCAAAGCAAGCTAAA+AGG - Chr1:38880244-38880263 MsG0180002477.01.T01:intron 35.0%
AAATGTCAAAGCAAGCTCAA+AGG - Chr1:38875504-38875523 MsG0180002477.01.T01:intron 35.0%
AAATGTCCAACTTAGTACCT+AGG + Chr1:38881873-38881892 None:intergenic 35.0%
AAATTACATAAGGTCCCCTT+GGG + Chr1:38876994-38877013 None:intergenic 35.0%
AACTGAATCCTGGATAACTT+AGG + Chr1:38876323-38876342 None:intergenic 35.0%
AATGTTACTATTACTCGTGC+CGG - Chr1:38881089-38881108 MsG0180002477.01.T01:CDS 35.0%
AATTTCTTAACCATGGTCTC+AGG - Chr1:38877270-38877289 MsG0180002477.01.T01:intron 35.0%
ACATAAAACTTAAAGGACCC+AGG - Chr1:38877818-38877837 MsG0180002477.01.T01:CDS 35.0%
ACCCAGAAAAAATGTGGTAT+GGG - Chr1:38880975-38880994 MsG0180002477.01.T01:intron 35.0%
ACTTACCAAGAAATAGCCAT+TGG + Chr1:38875854-38875873 None:intergenic 35.0%
ACTTTCTTTACCTTCTTCAG+TGG + Chr1:38875417-38875436 None:intergenic 35.0%
AGGTAGTAACAAAGTAGCAA+TGG - Chr1:38880669-38880688 MsG0180002477.01.T01:intron 35.0%
AGGTGGTTGGAAAATATTCA+GGG - Chr1:38876076-38876095 MsG0180002477.01.T01:CDS 35.0%
AGTTTCAGATAGGTCCTTAA+CGG + Chr1:38877739-38877758 None:intergenic 35.0%
ATGACACAATCTTACACCAA+TGG - Chr1:38875835-38875854 MsG0180002477.01.T01:intron 35.0%
ATTGGGATATGGATTTGTCA+AGG + Chr1:38879297-38879316 None:intergenic 35.0%
CAACACCGTTTGGAAATTTA+AGG + Chr1:38875193-38875212 None:intergenic 35.0%
CAAGCACCAAAGTAATTCAA+AGG + Chr1:38879071-38879090 None:intergenic 35.0%
CAAGCTCAAAGGACAATAAA+AGG - Chr1:38875515-38875534 MsG0180002477.01.T01:intron 35.0%
CATAAAACTTAAAGGACCCA+GGG - Chr1:38877819-38877838 MsG0180002477.01.T01:CDS 35.0%
CATTAACAGCTTCAGATGTT+AGG + Chr1:38880714-38880733 None:intergenic 35.0%
CATTGTAAGCTCATGTGAAA+TGG - Chr1:38882280-38882299 MsG0180002477.01.T01:intron 35.0%
CCAAAGGAGTTTATGAAAAG+AGG - Chr1:38876652-38876671 MsG0180002477.01.T01:intron 35.0%
CCAATCCGAAAGAAATTACT+AGG - Chr1:38876197-38876216 MsG0180002477.01.T01:intron 35.0%
CCATTCGCAAAGAAATTACT+AGG - Chr1:38881119-38881138 MsG0180002477.01.T01:CDS 35.0%
CCTAGTAATTTCTTTCGGAT+TGG + Chr1:38876200-38876219 None:intergenic 35.0%
CCTAGTAATTTCTTTGCGAA+TGG + Chr1:38881122-38881141 None:intergenic 35.0%
CGATGACAAGGTTATAAGAA+AGG - Chr1:38881239-38881258 MsG0180002477.01.T01:intron 35.0%
CTTTACAGGTAGTAACAAAG+TGG - Chr1:38875735-38875754 MsG0180002477.01.T01:intron 35.0%
GAAAATTCTCAGGTGAGTTT+AGG - Chr1:38875543-38875562 MsG0180002477.01.T01:intron 35.0%
GATTATGTTGCAATCTCGAT+CGG + Chr1:38882531-38882550 None:intergenic 35.0%
GATTGCATTTCAATCAAGGT+TGG - Chr1:38879350-38879369 MsG0180002477.01.T01:intron 35.0%
GTAACCACTGTTTCAAATCA+TGG + Chr1:38880854-38880873 None:intergenic 35.0%
GTGTTGGATGGAAAATATTC+AGG - Chr1:38880997-38881016 MsG0180002477.01.T01:intron 35.0%
GTGTTTGATGTTTCAATTGC+AGG - Chr1:38882851-38882870 MsG0180002477.01.T01:intron 35.0%
GTTTCACGTTTGTAACAGAT+AGG - Chr1:38877582-38877601 MsG0180002477.01.T01:CDS 35.0%
TAAACGTTGTGCAATGAATC+AGG + Chr1:38878466-38878485 None:intergenic 35.0%
TAAAGGGACTGCAACAATAA+GGG - Chr1:38875986-38876005 MsG0180002477.01.T01:intron 35.0%
TAAATTACATAAGGTCCCCT+TGG + Chr1:38876995-38877014 None:intergenic 35.0%
TAATCAATAACCGTAAGCAC+GGG + Chr1:38877150-38877169 None:intergenic 35.0%
TACCCAGAAAAAATGTGGTA+TGG - Chr1:38880974-38880993 MsG0180002477.01.T01:intron 35.0%
TATCGTGTCTGCCTTTAATT+TGG - Chr1:38881968-38881987 MsG0180002477.01.T01:intron 35.0%
TATGGTACCCAGAAAAAATG+TGG - Chr1:38880969-38880988 MsG0180002477.01.T01:intron 35.0%
TCAAAACTTGAATATCGACC+GGG + Chr1:38882614-38882633 None:intergenic 35.0%
TCCTCTCATCAATCAACTTA+AGG + Chr1:38881788-38881807 None:intergenic 35.0%
TGCAACATGCGTAATTATAG+AGG + Chr1:38882384-38882403 None:intergenic 35.0%
TGGACAAGGTTATAAGAAAG+GGG - Chr1:38876274-38876293 MsG0180002477.01.T01:intron 35.0%
TGGAGAGAAATGGTGATATT+TGG - Chr1:38875231-38875250 MsG0180002477.01.T01:intron 35.0%
TGGAGAGTAATGGTGATATT+TGG - Chr1:38879953-38879972 MsG0180002477.01.T01:intron 35.0%
TGTTCTCTTGAAAACTCACT+TGG + Chr1:38880876-38880895 None:intergenic 35.0%
TTAAAGGGACTGCAACAATA+AGG - Chr1:38875985-38876004 MsG0180002477.01.T01:intron 35.0%
TTATGCCTGTATTGTACAGA+AGG - Chr1:38876479-38876498 MsG0180002477.01.T01:intron 35.0%
TTTAAGCCTAGGTACTAAGT+TGG - Chr1:38881864-38881883 MsG0180002477.01.T01:CDS 35.0%
! CCTCTTTTCATAAACTCCTT+CGG + Chr1:38876655-38876674 None:intergenic 35.0%
! CCTCTTTTCATAAACTCCTT+TGG + Chr1:38876655-38876674 None:intergenic 35.0%
! GAAGCATACATTCAAGGTTT+TGG - Chr1:38876514-38876533 MsG0180002477.01.T01:intron 35.0%
! GAAGTGAGTTTGAGGTATTA+TGG - Chr1:38876029-38876048 MsG0180002477.01.T01:intron 35.0%
! GAGGTGAGTTTGAGATATTA+TGG - Chr1:38880951-38880970 MsG0180002477.01.T01:intron 35.0%
! GTTTTATGCTTCATCACATC+AGG + Chr1:38881470-38881489 None:intergenic 35.0%
! TAAACCATGATTTGGAACAG+TGG - Chr1:38875925-38875944 MsG0180002477.01.T01:intron 35.0%
! TATAAGAAAGGGGTCTTTTG+TGG - Chr1:38881251-38881270 MsG0180002477.01.T01:intron 35.0%
! TCGCTTCTTTCTTCTTGTTT+CGG + Chr1:38878123-38878142 None:intergenic 35.0%
! TGAAATAAGAGGTGTGCAAT+TGG - Chr1:38882631-38882650 MsG0180002477.01.T01:CDS 35.0%
!! AAGTTTCTAAGGTTTCAGAC+AGG - Chr1:38877667-38877686 MsG0180002477.01.T01:CDS 35.0%
!! AATCACCTGAGAATTTTGGT+TGG + Chr1:38880314-38880333 None:intergenic 35.0%
!! ACTTTATATAAGGTACCGTC+CGG + Chr1:38882307-38882326 None:intergenic 35.0%
!! ATATTTTGGGTGGAGAGAAA+TGG - Chr1:38875221-38875240 MsG0180002477.01.T01:intron 35.0%
!! ATATTTTGGGTGGAGAGTAA+TGG - Chr1:38879943-38879962 MsG0180002477.01.T01:intron 35.0%
!! ATTTAAGAAGTGCTTGGGTT+GGG + Chr1:38879536-38879555 None:intergenic 35.0%
!! CAATAAGGGTTGGTAAAGAA+AGG - Chr1:38876000-38876019 MsG0180002477.01.T01:intron 35.0%
!! CAATAAGGGTTGGTAATGAA+AGG - Chr1:38880922-38880941 MsG0180002477.01.T01:intron 35.0%
!! CTTTGAATTACTTTGGTGCT+TGG - Chr1:38879069-38879088 MsG0180002477.01.T01:intron 35.0%
!! GAAGGATTTAAGAAGTGCTT+GGG + Chr1:38879541-38879560 None:intergenic 35.0%
!! GTTTCGAGTTTGTTTCAGAT+AGG - Chr1:38877698-38877717 MsG0180002477.01.T01:CDS 35.0%
!! TCCTTAAGTTGATTGATGAG+AGG - Chr1:38881784-38881803 MsG0180002477.01.T01:CDS 35.0%
!! TGAAGGATTTAAGAAGTGCT+TGG + Chr1:38879542-38879561 None:intergenic 35.0%
!! TTACACCAATGGCTATTTCT+TGG - Chr1:38875846-38875865 MsG0180002477.01.T01:intron 35.0%
!! TTTCAGAAAGTATTGGGCTA+AGG + Chr1:38879649-38879668 None:intergenic 35.0%
!!! ACCCATACCACATTTTTTCT+GGG + Chr1:38880979-38880998 None:intergenic 35.0%
!!! ATCACCTGAGAATTTTGGTT+GGG + Chr1:38880313-38880332 None:intergenic 35.0%
AAAGAAGGCAAAGTGGAGAT+TGG - Chr1:38881750-38881769 MsG0180002477.01.T01:CDS 40.0%
AACGAGTGATCAATCGGAAA+CGG + Chr1:38878043-38878062 None:intergenic 40.0%
AAGTGATGAAGAGAGTGATG+AGG - Chr1:38875478-38875497 MsG0180002477.01.T01:intron 40.0%
AAGTGATGACAGTTCAGATG+AGG - Chr1:38880218-38880237 MsG0180002477.01.T01:intron 40.0%
AATGTGTGAGATGAGGTTGA+TGG + Chr1:38879408-38879427 None:intergenic 40.0%
ATGGATCAGCAAAAGAAAGC+AGG + Chr1:38879389-38879408 None:intergenic 40.0%
ATTACGCATGTTGCAACACT+CGG - Chr1:38882389-38882408 MsG0180002477.01.T01:CDS 40.0%
ATTGTCACTATTACTCGTGC+CGG - Chr1:38876167-38876186 MsG0180002477.01.T01:intron 40.0%
CAAAACTTGAATATCGACCG+GGG + Chr1:38882613-38882632 None:intergenic 40.0%
CAAAGTAGCAATGGTGAAGA+AGG - Chr1:38880678-38880697 MsG0180002477.01.T01:intron 40.0%
CCGAAGGAGTTTATGAAAAG+AGG - Chr1:38881612-38881631 MsG0180002477.01.T01:intron 40.0%
CCTTCATATCAACTCCGTTA+AGG - Chr1:38877722-38877741 MsG0180002477.01.T01:CDS 40.0%
CGTTGCTTCAGAATTTCCAA+AGG - Chr1:38882505-38882524 MsG0180002477.01.T01:CDS 40.0%
CTCATATGAAATGGACCCAA+GGG - Chr1:38876976-38876995 MsG0180002477.01.T01:CDS 40.0%
CTCTTCATGACTTTCTTCTG+TGG + Chr1:38880187-38880206 None:intergenic 40.0%
CTTGGAGAACAAACAGCTAA+TGG + Chr1:38882884-38882903 None:intergenic 40.0%
GAAGGCTAGAAAATACCCAA+TGG - Chr1:38875768-38875787 MsG0180002477.01.T01:intron 40.0%
GAGAATCGATGGAGAAAAAG+AGG + Chr1:38877987-38878006 None:intergenic 40.0%
GAGGGTTCCTAAGAAATATG+TGG - Chr1:38879855-38879874 MsG0180002477.01.T01:intron 40.0%
GAGGGTTCCTAAGATATATG+TGG - Chr1:38875133-38875152 MsG0180002477.01.T01:intron 40.0%
GAGGTGGTTGGAAAATATTC+AGG - Chr1:38876075-38876094 MsG0180002477.01.T01:CDS 40.0%
GGACGGTACCTTATATAAAG+TGG - Chr1:38882306-38882325 MsG0180002477.01.T01:intron 40.0%
GTAACCACTGTTCCAAATCA+TGG + Chr1:38875932-38875951 None:intergenic 40.0%
GTTAGTAGCCTAAGTTATCC+AGG - Chr1:38876312-38876331 MsG0180002477.01.T01:intron 40.0%
GTTGCAAAGAAGGAACACAT+TGG - Chr1:38881281-38881300 MsG0180002477.01.T01:intron 40.0%
TAAGCTCATGTGAAATGGAC+CGG - Chr1:38882285-38882304 MsG0180002477.01.T01:intron 40.0%
TCATATGAAATGGACCCAAG+GGG - Chr1:38876977-38876996 MsG0180002477.01.T01:CDS 40.0%
TCATCTTCATCGAACAGACA+TGG - Chr1:38878152-38878171 MsG0180002477.01.T01:intron 40.0%
TGAAAATGGGGAGAAAGTCA+TGG - Chr1:38881658-38881677 MsG0180002477.01.T01:CDS 40.0%
TGAAGCAGAGACGTTGAATT+GGG - Chr1:38882099-38882118 MsG0180002477.01.T01:CDS 40.0%
TGACAAGAGAAAAGCGAGTA+TGG - Chr1:38880275-38880294 MsG0180002477.01.T01:intron 40.0%
TGGTGAAGATAGACTTCGAT+CGG - Chr1:38878084-38878103 MsG0180002477.01.T01:intron 40.0%
TTGAAGCAGAGACGTTGAAT+TGG - Chr1:38882098-38882117 MsG0180002477.01.T01:CDS 40.0%
!! CCTTAACGGAGTTGATATGA+AGG + Chr1:38877725-38877744 None:intergenic 40.0%
!! GAATTACTTTGGTGCTTGGA+AGG - Chr1:38879073-38879092 MsG0180002477.01.T01:intron 40.0%
!! GATTTAAGAAGTGCTTGGGT+TGG + Chr1:38879537-38879556 None:intergenic 40.0%
!! GGCTAAGGCTTTAAGAAATG+AGG + Chr1:38879634-38879653 None:intergenic 40.0%
!! TCAAGGTTTTGGTGAAGAAC+CGG - Chr1:38876525-38876544 MsG0180002477.01.T01:intron 40.0%
!! TGGTAAGAGTGTTGCAAAGA+AGG - Chr1:38881271-38881290 MsG0180002477.01.T01:intron 40.0%
!! TGTATTGACTAGTGAATCCC+CGG - Chr1:38882593-38882612 MsG0180002477.01.T01:CDS 40.0%
!! TTTTCTAGCCTTCTTCACCA+TGG + Chr1:38875761-38875780 None:intergenic 40.0%
!!! CACCCATACCACATTTTTTC+TGG + Chr1:38880980-38880999 None:intergenic 40.0%
!!! CTTGTCCTTTTAGCTTGCTT+TGG + Chr1:38880252-38880271 None:intergenic 40.0%
AAAACTTAAAGGACCCAGGG+AGG - Chr1:38877822-38877841 MsG0180002477.01.T01:CDS 45.0%
AAAAGGCCAAATACCTCCCT+GGG + Chr1:38877838-38877857 None:intergenic 45.0%
AAAGGACCCAGGGATGTATT+TGG + Chr1:38877560-38877579 None:intergenic 45.0%
AATCCTTCACCAACCTACAG+AGG - Chr1:38879553-38879572 MsG0180002477.01.T01:intron 45.0%
AATGAGTACAGAGATCGCCA+TGG + Chr1:38877948-38877967 None:intergenic 45.0%
ACAATGCTAACCCGTGCTTA+CGG - Chr1:38877137-38877156 MsG0180002477.01.T01:CDS 45.0%
ACAGCTTCAGATTGTGCCAT+TGG + Chr1:38875787-38875806 None:intergenic 45.0%
ACATTGGAGGAACGTCTTCT+AGG - Chr1:38881297-38881316 MsG0180002477.01.T01:intron 45.0%
ACCACCCAACCAAAATTCTC+AGG - Chr1:38880306-38880325 MsG0180002477.01.T01:intron 45.0%
ACGTGAAACTTAAAGGACCC+AGG + Chr1:38877571-38877590 None:intergenic 45.0%
AGCTGAAGACACAGAAGAAG+AGG - Chr1:38880128-38880147 MsG0180002477.01.T01:intron 45.0%
AGGTAGTAACAAAGTGGCCA+TGG - Chr1:38875741-38875760 MsG0180002477.01.T01:intron 45.0%
AGTTAATGCCTAAACCTGGC+AGG - Chr1:38880649-38880668 MsG0180002477.01.T01:intron 45.0%
CACGACCTTCTGTACAATAC+AGG + Chr1:38876487-38876506 None:intergenic 45.0%
CAGGACCTTCTGTACAATAC+AGG + Chr1:38881451-38881470 None:intergenic 45.0%
CCTCATATGAAATGGACCCA+AGG - Chr1:38876975-38876994 MsG0180002477.01.T01:CDS 45.0%
CCTTGGGTCCATTTCATATG+AGG + Chr1:38876978-38876997 None:intergenic 45.0%
CGAAGGATGATGAGAATCGA+TGG + Chr1:38877998-38878017 None:intergenic 45.0%
CGTGAAACTTAAAGGACCCA+GGG + Chr1:38877570-38877589 None:intergenic 45.0%
CTACTTTGTTACTACCTGCC+AGG + Chr1:38880666-38880685 None:intergenic 45.0%
CTTTGCGAATGGTTCGTTTC+CGG + Chr1:38881111-38881130 None:intergenic 45.0%
GAAAGATCTTGTATGGGAGG+TGG - Chr1:38876059-38876078 MsG0180002477.01.T01:intron 45.0%
GAAGCAGAGACGTTGAATTG+GGG - Chr1:38882100-38882119 MsG0180002477.01.T01:CDS 45.0%
GACTGAGCGTAGAATCGAAA+AGG + Chr1:38877855-38877874 None:intergenic 45.0%
GCAAAGAAGGAACACATTGG+AGG - Chr1:38881284-38881303 MsG0180002477.01.T01:intron 45.0%
GCTGAAGACACAGAAGAAGA+GGG - Chr1:38880129-38880148 MsG0180002477.01.T01:intron 45.0%
GCTGCAGATTCAGTAAAGGT+TGG - Chr1:38881715-38881734 MsG0180002477.01.T01:CDS 45.0%
GGAACTGCAACAATAAGGGT+TGG - Chr1:38880912-38880931 MsG0180002477.01.T01:intron 45.0%
GGTAGATGACGAGATCGATT+GGG + Chr1:38878022-38878041 None:intergenic 45.0%
GTATTTGCAGAGTGCACCAA+AGG - Chr1:38876636-38876655 MsG0180002477.01.T01:intron 45.0%
GTATTTGCAGTGTGTACCGA+AGG - Chr1:38881596-38881615 MsG0180002477.01.T01:intron 45.0%
TCTTCATCGAACAGACATGG+CGG - Chr1:38878155-38878174 MsG0180002477.01.T01:intron 45.0%
TGAAAATGGGGAGGAAGTCA+TGG - Chr1:38876698-38876717 MsG0180002477.01.T01:intron 45.0%
TGATGACAGTTCAGATGAGG+TGG - Chr1:38880221-38880240 MsG0180002477.01.T01:intron 45.0%
TGTGGCTGCAGATTCAGTAA+AGG - Chr1:38881711-38881730 MsG0180002477.01.T01:CDS 45.0%
TGTTACTACCTGCCAGGTTT+AGG + Chr1:38880660-38880679 None:intergenic 45.0%
TTGTGGAGTTGAAAATGGGG+AGG - Chr1:38876689-38876708 MsG0180002477.01.T01:intron 45.0%
TTTCAGGAGGCTCTCTACTA+GGG - Chr1:38882469-38882488 MsG0180002477.01.T01:CDS 45.0%
! CAGCTTCAGATTGTGCCATT+GGG + Chr1:38875786-38875805 None:intergenic 45.0%
! GATTGGCCAAATACATCCCT+GGG - Chr1:38877551-38877570 MsG0180002477.01.T01:CDS 45.0%
! TGGTAATGAAAGGAGTGTGG+AGG - Chr1:38880932-38880951 MsG0180002477.01.T01:intron 45.0%
!! AATGTGGTATGGGTGTTGGA+TGG - Chr1:38880985-38881004 MsG0180002477.01.T01:intron 45.0%
!! GGTTGGTAAAGAAAGGAGTG+TGG - Chr1:38876007-38876026 MsG0180002477.01.T01:intron 45.0%
!! GGTTGGTAATGAAAGGAGTG+TGG - Chr1:38880929-38880948 MsG0180002477.01.T01:intron 45.0%
!! TTTTCAGGAGGCTCTCTACT+AGG - Chr1:38882468-38882487 MsG0180002477.01.T01:CDS 45.0%
!!! ACCTGAGAATTTTGGTTGGG+TGG + Chr1:38880310-38880329 None:intergenic 45.0%
!! AAAAATAATAAATACTTAAT+TGG - Chr1:38880576-38880595 MsG0180002477.01.T01:intron 5.0%
!! TAATATATGATAAAAAAAAT+TGG - Chr1:38875679-38875698 MsG0180002477.01.T01:intron 5.0%
ATGAGAGTCTTTGTGGCTGC+AGG - Chr1:38882738-38882757 MsG0180002477.01.T01:intron 50.0%
CAAAGTGGCCATGGTGAAGA+AGG - Chr1:38875750-38875769 MsG0180002477.01.T01:intron 50.0%
CATGGAACAATGACCCGAAC+CGG + Chr1:38877930-38877949 None:intergenic 50.0%
CGGTAGATGACGAGATCGAT+TGG + Chr1:38878023-38878042 None:intergenic 50.0%
CTCATGTGAAATGGACCGGA+CGG - Chr1:38882289-38882308 MsG0180002477.01.T01:intron 50.0%
GAAAAGGCCAAATACCTCCC+TGG + Chr1:38877839-38877858 None:intergenic 50.0%
GAGGCACAAACACTACCACA+CGG - Chr1:38879572-38879591 MsG0180002477.01.T01:intron 50.0%
GATCTTGTATGGGAGGTGGT+TGG - Chr1:38876063-38876082 MsG0180002477.01.T01:CDS 50.0%
GCGGTGTAGGCAATTCTGTA+AGG - Chr1:38878174-38878193 MsG0180002477.01.T01:intron 50.0%
GCTGCAGGTTCAGTAAAGGT+TGG - Chr1:38876755-38876774 MsG0180002477.01.T01:CDS 50.0%
GGAGTGTGGAAGTGAGTTTG+AGG - Chr1:38876021-38876040 MsG0180002477.01.T01:intron 50.0%
GGGACTGCAACAATAAGGGT+TGG - Chr1:38875990-38876009 MsG0180002477.01.T01:intron 50.0%
GGTAGTGTTTGTGCCTCTGT+AGG + Chr1:38879569-38879588 None:intergenic 50.0%
GGTGCTAAAGCCACTGAAGA+AGG - Chr1:38875404-38875423 MsG0180002477.01.T01:intron 50.0%
GTGTTTGTGCCTCTGTAGGT+TGG + Chr1:38879565-38879584 None:intergenic 50.0%
TAACCAGTGTCCTGAGACCA+TGG + Chr1:38877283-38877302 None:intergenic 50.0%
TAACCATGGTCTCAGGACAC+TGG - Chr1:38877277-38877296 MsG0180002477.01.T01:intron 50.0%
TGTGGCTGCAGGTTCAGTAA+AGG - Chr1:38882749-38882768 MsG0180002477.01.T01:intron 50.0%
TTGCAATCTCGATCGGCCTT+TGG + Chr1:38882524-38882543 None:intergenic 50.0%
TTTGGTGAAGAACACAGCCC+CGG - Chr1:38876532-38876551 MsG0180002477.01.T01:CDS 50.0%
! CGATTGGCCAAATACATCCC+TGG - Chr1:38877550-38877569 MsG0180002477.01.T01:CDS 50.0%
! CTTTCGGATTGGGTCGTTTC+CGG + Chr1:38876189-38876208 None:intergenic 50.0%
!! AAAGGACCCAGGGAGGTATT+TGG - Chr1:38877829-38877848 MsG0180002477.01.T01:CDS 50.0%
!! AAGTTGATGGATTGGCCGTG+TGG + Chr1:38879590-38879609 None:intergenic 50.0%
!! ATGAGAGTATTCGTGGCTGC+AGG - Chr1:38876740-38876759 MsG0180002477.01.T01:CDS 50.0%
!! GGTTTTGGTGAAGAACCGGT+CGG - Chr1:38881496-38881515 MsG0180002477.01.T01:intron 50.0%
CAAACGGTGGCGCGTTGAAT+CGG + Chr1:38877894-38877913 None:intergenic 55.0%
CGTGGCTGCAGGTTCAGTAA+AGG - Chr1:38876751-38876770 MsG0180002477.01.T01:CDS 55.0%
GACGAGATCGATTGGGACGA+AGG + Chr1:38878015-38878034 None:intergenic 55.0%
TCGAACAGACATGGCGGTGT+AGG - Chr1:38878161-38878180 MsG0180002477.01.T01:intron 55.0%
! CGGTTCGGGTCATTGTTCCA+TGG - Chr1:38877928-38877947 MsG0180002477.01.T01:CDS 55.0%
!! GTGCCTCTGTAGGTTGGTGA+AGG + Chr1:38879559-38879578 None:intergenic 55.0%
CGTTTGAACCAACGCGCCAC+CGG - Chr1:38877908-38877927 MsG0180002477.01.T01:CDS 60.0%
GGAACAATGACCCGAACCGG+TGG + Chr1:38877927-38877946 None:intergenic 60.0%
GTGAAGAACACAGCCCCGGT+AGG - Chr1:38876536-38876555 MsG0180002477.01.T01:CDS 60.0%
!! CGGTGGCGCGTTGGTTCAAA+CGG + Chr1:38877910-38877929 None:intergenic 60.0%
!! TGGCGCGTTGGTTCAAACGG+TGG + Chr1:38877907-38877926 None:intergenic 60.0%
! GAACCAACGCGCCACCGGTT+CGG - Chr1:38877913-38877932 MsG0180002477.01.T01:CDS 65.0%
!! AACCAACGCGCCACCGGTTC+GGG - Chr1:38877914-38877933 MsG0180002477.01.T01:CDS 65.0%
GACCCGAACCGGTGGCGCGT+TGG + Chr1:38877919-38877938 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 38874958 38882916 38874958 ID=MsG0180002477.01;Name=MsG0180002477.01
Chr1 mRNA 38874958 38882916 38874958 ID=MsG0180002477.01.T01;Parent=MsG0180002477.01;Name=MsG0180002477.01.T01;_AED=0.35;_eAED=0.36;_QI=0|0|0|0.92|1|1|13|0|807
Chr1 exon 38882860 38882916 38882860 ID=MsG0180002477.01.T01:exon:12544;Parent=MsG0180002477.01.T01
Chr1 exon 38882320 38882740 38882320 ID=MsG0180002477.01.T01:exon:12545;Parent=MsG0180002477.01.T01
Chr1 exon 38882007 38882131 38882007 ID=MsG0180002477.01.T01:exon:12546;Parent=MsG0180002477.01.T01
Chr1 exon 38881656 38881929 38881656 ID=MsG0180002477.01.T01:exon:12547;Parent=MsG0180002477.01.T01
Chr1 exon 38881321 38881376 38881321 ID=MsG0180002477.01.T01:exon:12548;Parent=MsG0180002477.01.T01
Chr1 exon 38881004 38881228 38881004 ID=MsG0180002477.01.T01:exon:12549;Parent=MsG0180002477.01.T01
Chr1 exon 38877547 38878018 38877547 ID=MsG0180002477.01.T01:exon:12550;Parent=MsG0180002477.01.T01
Chr1 exon 38877085 38877203 38877085 ID=MsG0180002477.01.T01:exon:12551;Parent=MsG0180002477.01.T01
Chr1 exon 38876734 38877007 38876734 ID=MsG0180002477.01.T01:exon:12552;Parent=MsG0180002477.01.T01
Chr1 exon 38876527 38876625 38876527 ID=MsG0180002477.01.T01:exon:12553;Parent=MsG0180002477.01.T01
Chr1 exon 38876361 38876412 38876361 ID=MsG0180002477.01.T01:exon:12554;Parent=MsG0180002477.01.T01
Chr1 exon 38876060 38876152 38876060 ID=MsG0180002477.01.T01:exon:12555;Parent=MsG0180002477.01.T01
Chr1 exon 38874958 38875114 38874958 ID=MsG0180002477.01.T01:exon:12556;Parent=MsG0180002477.01.T01
Chr1 CDS 38882860 38882916 38882860 ID=MsG0180002477.01.T01:cds;Parent=MsG0180002477.01.T01
Chr1 CDS 38882320 38882740 38882320 ID=MsG0180002477.01.T01:cds;Parent=MsG0180002477.01.T01
Chr1 CDS 38882007 38882131 38882007 ID=MsG0180002477.01.T01:cds;Parent=MsG0180002477.01.T01
Chr1 CDS 38881656 38881929 38881656 ID=MsG0180002477.01.T01:cds;Parent=MsG0180002477.01.T01
Chr1 CDS 38881321 38881376 38881321 ID=MsG0180002477.01.T01:cds;Parent=MsG0180002477.01.T01
Chr1 CDS 38881004 38881228 38881004 ID=MsG0180002477.01.T01:cds;Parent=MsG0180002477.01.T01
Chr1 CDS 38877547 38878018 38877547 ID=MsG0180002477.01.T01:cds;Parent=MsG0180002477.01.T01
Chr1 CDS 38877085 38877203 38877085 ID=MsG0180002477.01.T01:cds;Parent=MsG0180002477.01.T01
Chr1 CDS 38876734 38877007 38876734 ID=MsG0180002477.01.T01:cds;Parent=MsG0180002477.01.T01
Chr1 CDS 38876527 38876625 38876527 ID=MsG0180002477.01.T01:cds;Parent=MsG0180002477.01.T01
Chr1 CDS 38876361 38876412 38876361 ID=MsG0180002477.01.T01:cds;Parent=MsG0180002477.01.T01
Chr1 CDS 38876060 38876152 38876060 ID=MsG0180002477.01.T01:cds;Parent=MsG0180002477.01.T01
Chr1 CDS 38874958 38875114 38874958 ID=MsG0180002477.01.T01:cds;Parent=MsG0180002477.01.T01
Gene Sequence

>MsG0180002477.01.T01

ATGTCATTTCAACATGTTCCAGATTTTCATAGGATAATCTTGCAAGATAAGAAACTTAGGGTTCCTAAGATATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGAAATGGTGATATTTGGTTTCAAAAAAACTGGGAAAGTTTTGCAAAGCCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATATGGTGCCAATACTTTAGAAATAAACTATTCCAATATCAAATCAGTTTTTGAAGGTGCTAAAGCCACTGAAGAAGGTAAAGAAAGTGATGAATCAAGTGATGATGAACCCACAAAAGAAGATGAAGAAAGTGATGAAGAGAGTGATGAGGTTGAAATGTCAAAGCAAGCTCAAAGGACAATAAAAGGGAAGAGAAAATTCTCAGGTAGTAACAAAGTGGCCATGGTGAAGAAGGCTAGAAAATACCCAATGGCACAATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACACAATCTTACACCAATGGCTATTTCTTGTGGTTACCATTTGAGTTTTCAAGAGAACACTTGAAAGATTTTAAAGGGACTGCAACAATAAGGGTTGGTAAAGAAAGGAGTGTGGAAGTGAGTTTGAGGTATTATGGTAACAAAGAAAGATCTTGTATGGGAGGTGGTTGGAAAATATTCAGGGAAAAGTATAATTTGCAAGTTGAGGATGTTTGTAAATTTGAGATGATTCAACGGAGACCGTTTTCATTCATTGTCACTATTACTCGTGCCGGAAACGACCCAATCCGAAAGAAATTACTAGAAGGTCGTGATTTGATGAAGCATACATTCAAGGTTTTGGTGAAGAACACAGCCCCGAGTGCACCAAAGGAGTTTATGAAAAGAGGATGTCATGAAAATATTGTGGAGTTGAAAATGGGGAGGAAGTCATGGTTCGTAAAAGTGAATTATTATGAGAGTATTCGTGGCTGCAGGTTCAGTAAAGGTTGGTTAAAATTCATGAAAGAATGCAATGTGGAGATTGGAGATACTTGTCTCTTTAAGTTGATTGATGAGAGCAAGTTTGTGTTTGATGTTTCAATTAGGGTTCCTAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAACGGTGTTGAACAAAAAATATTTTGGGTGGAGAGTAATGGTGATATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGCCTTTCAAATATGGATATCTCTTAACTTTCAAATTCATTAGTGGATCATATTTTAAGGTGAAGATATTTGGTGCCAATACTTTAGAAATAAATTATGGCAATATCAAATCTGTTGATGAAGGAGCTGAAGACACAGAAGAAGAGGGTAAAGAAAGTGATGAATCAAGTGATAATGAAGCCACAGAAGAAAGTCATGAAGAGAGTGATGAATCAAGTGATGACAGTTCAGATGAGGTGGAAATGCCAAAGCAAGCTAAAAGGACAAGAAATGACAAGAGAAAAGCGAGTATGGATTTTGACACCACCCAACCAAAATTCTCAGGTAGTAACAAAGTAGCAATGGTGAAGAAGGCTAGAAAATACCTAACATCTGAAGCTGTTAATGAGAATCCCTCTTTTGAAGTTATAATGACACAATCTTACACCAATGGCTATTTCTTGTGGTTACCAAGTGAGTTTTCAAGAGAACACTTGAAAGATTTTAATGGAACTGCAACAATAAGGGTTGGTAATGAAAGGAGTGTGGAGGTGAGTTTGAGATATTATGGTACCCAGAAAAAATGTGGTATGGGTGTTGGATGGAAAATATTCAGGCAAAAATATAATTTGCAAGTTGATGATGTTTGTAAATTTGAGATGATTCGACGGAGACCAATTTCATTCAATGTTACTATTACTCGTGCCGGAAACGAACCATTCGCAAAGAAATTACTAGGTTATAAGAAAGGGGTCTTTTGTGGTAAGAGTGTTGCAAAGAAGGAACACATTGGAGGAACGTCTTCTAGGAGCTGTCCAAAAGAAAATTTTCTTGAGGAAGGTCCTGATGTGATGAAGCATAAAACATTCAAGGTTTTGGTGAAGAACCGATTCAGTAAAGGTTGGAGAAAATTTATGAAAGAAGGCAAAGTGGAGATTGGAGATAGTTGTCTCCTTAAGTTGATTGATGAGAGGAAATTTGTGTTCAGTAAAGGTTGGATAAAATTCATGAAAGAATACAAAGTGGAGATTGGAGATACTTGTCTCCTTAAGTTGATTGATGAGAGGAAATTTGTGTTTGATGTTTCAATTGCAGGAAAGAATCCATTAGCTGTTTGTTCTCCAAGAATCCATTTATAA
Protein sequence

>MsG0180002477.01.T01

MSFQHVPDFHRIILQDKKLRVPKIYVEKYWKGISNPIFLKFPNGVEQKIFWVERNGDIWFQKNWESFAKPFKYGYLLTFKFIGGSYFKVKIYGANTLEINYSNIKSVFEGAKATEEGKESDESSDDEPTKEDEESDEESDEVEMSKQAQRTIKGKRKFSGSNKVAMVKKARKYPMAQSEAVNENPSFEVIMTQSYTNGYFLWLPFEFSREHLKDFKGTATIRVGKERSVEVSLRYYGNKERSCMGGGWKIFREKYNLQVEDVCKFEMIQRRPFSFIVTITRAGNDPIRKKLLEGRDLMKHTFKVLVKNTAPSAPKEFMKRGCHENIVELKMGRKSWFVKVNYYESIRGCRFSKGWLKFMKECNVEIGDTCLFKLIDESKFVFDVSIRVPKKYVEKYWKGISNPIFLKFPNGVEQKIFWVESNGDIWFQKNWESFAKPFKYGYLLTFKFISGSYFKVKIFGANTLEINYGNIKSVDEGAEDTEEEGKESDESSDNEATEESHEESDESSDDSSDEVEMPKQAKRTRNDKRKASMDFDTTQPKFSGSNKVAMVKKARKYLTSEAVNENPSFEVIMTQSYTNGYFLWLPSEFSREHLKDFNGTATIRVGNERSVEVSLRYYGTQKKCGMGVGWKIFRQKYNLQVDDVCKFEMIRRRPISFNVTITRAGNEPFAKKLLGYKKGVFCGKSVAKKEHIGGTSSRSCPKENFLEEGPDVMKHKTFKVLVKNRFSKGWRKFMKEGKVEIGDSCLLKLIDERKFVFSKGWIKFMKEYKVEIGDTCLLKLIDERKFVFDVSIAGKNPLAVCSPRIHL*