Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001393.01.T01 | KEH40860.1 | 95.522 | 268 | 12 | 0 | 7 | 274 | 1 | 268 | 8.42E-180 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001393.01.T01 | P93324 | 49.012 | 253 | 115 | 5 | 21 | 270 | 12 | 253 | 2.94E-73 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001393.01.T01 | A0A072VRZ3 | 95.522 | 268 | 12 | 0 | 7 | 274 | 1 | 268 | 4.02e-180 | 505 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001393.01 | MsG0180001400.01 | 0.842417 | 2.618777e-58 | 3.968517e-55 |
| MsG0180001393.01 | MsG0180001403.01 | 0.967783 | 9.344952e-128 | 7.302248e-122 |
| MsG0180001393.01 | MsG0180001420.01 | 0.833678 | 4.647126e-56 | 5.390051e-53 |
| MsG0180001393.01 | MsG0680031429.01 | 0.801236 | 9.902770e-49 | 4.705278e-46 |
| MsG0180001393.01 | MsG0780036514.01 | 0.824502 | 7.797799e-54 | 6.919524e-51 |
| MsG0180001393.01 | MsG0780038123.01 | 0.806947 | 6.420911e-50 | 3.530998e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001393.01.T01 | MTR_1g036510 | 95.522 | 268 | 12 | 0 | 7 | 274 | 1 | 268 | 0.0 | 505 |
| MsG0180001393.01.T01 | MTR_1g036510 | 95.455 | 264 | 12 | 0 | 7 | 270 | 1 | 264 | 1.05e-179 | 496 |
| MsG0180001393.01.T01 | MTR_1g036510 | 95.455 | 264 | 12 | 0 | 7 | 270 | 1 | 264 | 1.90e-178 | 496 |
| MsG0180001393.01.T01 | MTR_1g036490 | 80.400 | 250 | 48 | 1 | 22 | 270 | 1 | 250 | 6.87e-146 | 414 |
| MsG0180001393.01.T01 | MTR_1g036460 | 78.000 | 250 | 54 | 1 | 22 | 270 | 1 | 250 | 3.84e-142 | 404 |
| MsG0180001393.01.T01 | MTR_1g050220 | 80.786 | 229 | 6 | 1 | 42 | 270 | 5 | 195 | 4.40e-128 | 366 |
| MsG0180001393.01.T01 | MTR_7g012020 | 52.991 | 234 | 104 | 4 | 39 | 270 | 21 | 250 | 1.75e-79 | 241 |
| MsG0180001393.01.T01 | MTR_7g012020 | 52.991 | 234 | 104 | 4 | 39 | 270 | 21 | 250 | 1.14e-78 | 240 |
| MsG0180001393.01.T01 | MTR_7g012020 | 52.991 | 234 | 104 | 4 | 39 | 270 | 21 | 250 | 5.45e-78 | 241 |
| MsG0180001393.01.T01 | MTR_7g012040 | 51.931 | 233 | 107 | 3 | 39 | 270 | 21 | 249 | 2.26e-76 | 236 |
| MsG0180001393.01.T01 | MTR_7g011900 | 51.394 | 251 | 114 | 6 | 24 | 270 | 5 | 251 | 3.94e-76 | 236 |
| MsG0180001393.01.T01 | MTR_3g021440 | 50.622 | 241 | 113 | 4 | 32 | 270 | 16 | 252 | 4.30e-76 | 236 |
| MsG0180001393.01.T01 | MTR_1g096310 | 48.996 | 249 | 113 | 5 | 21 | 266 | 12 | 249 | 5.19e-74 | 231 |
| MsG0180001393.01.T01 | MTR_2g055940 | 51.739 | 230 | 104 | 4 | 43 | 270 | 20 | 244 | 6.89e-73 | 228 |
| MsG0180001393.01.T01 | MTR_7g012070 | 51.695 | 236 | 109 | 4 | 39 | 270 | 22 | 256 | 9.37e-73 | 228 |
| MsG0180001393.01.T01 | MTR_7g012090 | 51.046 | 239 | 111 | 5 | 37 | 270 | 19 | 256 | 1.24e-71 | 224 |
| MsG0180001393.01.T01 | MTR_7g011990 | 48.438 | 256 | 117 | 6 | 22 | 270 | 1 | 248 | 4.42e-70 | 220 |
| MsG0180001393.01.T01 | MTR_3g021430 | 46.473 | 241 | 121 | 5 | 33 | 270 | 4 | 239 | 8.50e-66 | 209 |
| MsG0180001393.01.T01 | MTR_3g092900 | 40.000 | 250 | 143 | 4 | 22 | 270 | 1 | 244 | 1.27e-62 | 201 |
| MsG0180001393.01.T01 | MTR_8g068690 | 36.905 | 252 | 150 | 5 | 22 | 270 | 12 | 257 | 1.50e-51 | 170 |
| MsG0180001393.01.T01 | MTR_7g118300 | 41.841 | 239 | 131 | 5 | 34 | 270 | 24 | 256 | 9.85e-51 | 171 |
| MsG0180001393.01.T01 | MTR_8g068690 | 36.905 | 252 | 150 | 5 | 22 | 270 | 12 | 257 | 1.48e-50 | 170 |
| MsG0180001393.01.T01 | MTR_7g118320 | 38.934 | 244 | 139 | 5 | 32 | 270 | 5 | 243 | 9.25e-50 | 168 |
| MsG0180001393.01.T01 | MTR_5g098170 | 36.929 | 241 | 143 | 5 | 34 | 270 | 9 | 244 | 3.78e-48 | 164 |
| MsG0180001393.01.T01 | MTR_0591s0010 | 35.714 | 252 | 153 | 5 | 22 | 270 | 13 | 258 | 1.02e-47 | 163 |
| MsG0180001393.01.T01 | MTR_8g068750 | 36.111 | 252 | 152 | 5 | 22 | 270 | 13 | 258 | 8.28e-47 | 160 |
| MsG0180001393.01.T01 | MTR_8g068870 | 35.685 | 241 | 147 | 4 | 33 | 270 | 9 | 244 | 9.74e-46 | 157 |
| MsG0180001393.01.T01 | MTR_8g068600 | 38.095 | 210 | 122 | 4 | 64 | 270 | 28 | 232 | 7.16e-43 | 148 |
| MsG0180001393.01.T01 | MTR_6g078850 | 39.662 | 237 | 133 | 5 | 39 | 270 | 33 | 264 | 4.77e-41 | 148 |
| MsG0180001393.01.T01 | MTR_8g068570 | 32.669 | 251 | 135 | 5 | 22 | 270 | 13 | 231 | 1.98e-38 | 137 |
| MsG0180001393.01.T01 | MTR_8g024160 | 30.522 | 249 | 126 | 4 | 23 | 270 | 7 | 209 | 8.09e-32 | 120 |
| MsG0180001393.01.T01 | MTR_2g072790 | 35.000 | 240 | 145 | 5 | 33 | 270 | 4 | 234 | 1.06e-31 | 120 |
| MsG0180001393.01.T01 | MTR_3g096050 | 34.310 | 239 | 145 | 7 | 35 | 270 | 9 | 238 | 4.55e-31 | 116 |
| MsG0180001393.01.T01 | MTR_8g068740 | 32.143 | 252 | 130 | 6 | 22 | 270 | 13 | 226 | 7.70e-31 | 116 |
| MsG0180001393.01.T01 | MTR_3g096050 | 34.310 | 239 | 145 | 7 | 35 | 270 | 9 | 238 | 1.91e-30 | 117 |
| MsG0180001393.01.T01 | MTR_8g068730 | 32.143 | 252 | 130 | 6 | 22 | 270 | 13 | 226 | 2.68e-30 | 116 |
| MsG0180001393.01.T01 | MTR_6g060290 | 41.104 | 163 | 74 | 5 | 43 | 203 | 28 | 170 | 3.62e-28 | 106 |
| MsG0180001393.01.T01 | MTR_8g068620 | 46.591 | 88 | 47 | 0 | 183 | 270 | 2 | 89 | 7.56e-23 | 90.9 |
| MsG0180001393.01.T01 | MTR_3g096070 | 32.773 | 238 | 127 | 9 | 35 | 270 | 9 | 215 | 6.60e-22 | 93.6 |
| MsG0180001393.01.T01 | MTR_0017s0100 | 29.630 | 216 | 139 | 6 | 58 | 270 | 44 | 249 | 2.88e-21 | 92.4 |
| MsG0180001393.01.T01 | MTR_4g038440 | 28.241 | 216 | 142 | 6 | 58 | 270 | 44 | 249 | 8.89e-19 | 84.0 |
| MsG0180001393.01.T01 | MTR_0079s0070 | 28.241 | 216 | 142 | 6 | 58 | 270 | 10 | 215 | 2.31e-18 | 84.0 |
| MsG0180001393.01.T01 | MTR_4g038440 | 28.241 | 216 | 142 | 6 | 58 | 270 | 44 | 249 | 3.27e-18 | 83.6 |
| MsG0180001393.01.T01 | MTR_8g068760 | 36.154 | 130 | 75 | 4 | 41 | 166 | 18 | 143 | 5.50e-18 | 81.3 |
| MsG0180001393.01.T01 | MTR_8g068590 | 33.071 | 127 | 80 | 2 | 33 | 157 | 2 | 125 | 1.16e-17 | 78.2 |
| MsG0180001393.01.T01 | MTR_3g083620 | 37.037 | 108 | 66 | 2 | 164 | 270 | 134 | 240 | 3.93e-16 | 77.8 |
| MsG0180001393.01.T01 | MTR_5g074600 | 25.641 | 234 | 158 | 7 | 35 | 262 | 6 | 229 | 6.64e-15 | 73.9 |
| MsG0180001393.01.T01 | MTR_0794s0020 | 27.014 | 211 | 143 | 7 | 58 | 264 | 33 | 236 | 2.96e-14 | 70.9 |
| MsG0180001393.01.T01 | MTR_4g033150 | 27.014 | 211 | 143 | 7 | 58 | 264 | 33 | 236 | 9.90e-14 | 70.9 |
| MsG0180001393.01.T01 | MTR_4g033200 | 26.941 | 219 | 149 | 6 | 50 | 264 | 25 | 236 | 1.80e-13 | 70.1 |
| MsG0180001393.01.T01 | MTR_4g033015 | 26.941 | 219 | 149 | 6 | 50 | 264 | 25 | 236 | 1.83e-13 | 70.1 |
| MsG0180001393.01.T01 | MTR_7g024500 | 23.111 | 225 | 136 | 4 | 50 | 263 | 24 | 222 | 5.73e-13 | 68.6 |
| MsG0180001393.01.T01 | MTR_4g079160 | 28.000 | 225 | 146 | 5 | 43 | 262 | 13 | 226 | 6.50e-13 | 68.2 |
| MsG0180001393.01.T01 | MTR_1g076940 | 26.786 | 224 | 141 | 7 | 58 | 272 | 33 | 242 | 3.72e-12 | 66.2 |
| MsG0180001393.01.T01 | MTR_7g014570 | 28.279 | 244 | 137 | 8 | 32 | 264 | 10 | 226 | 5.13e-12 | 65.5 |
| MsG0180001393.01.T01 | MTR_7g024520 | 23.556 | 225 | 135 | 4 | 50 | 263 | 24 | 222 | 6.38e-12 | 65.5 |
| MsG0180001393.01.T01 | MTR_5g074680 | 25.581 | 215 | 148 | 6 | 50 | 262 | 26 | 230 | 3.15e-11 | 63.2 |
| MsG0180001393.01.T01 | MTR_4g033085 | 26.606 | 218 | 145 | 6 | 50 | 264 | 25 | 230 | 3.30e-11 | 63.2 |
| MsG0180001393.01.T01 | MTR_4g033170 | 26.852 | 216 | 143 | 6 | 50 | 262 | 25 | 228 | 3.46e-11 | 63.2 |
| MsG0180001393.01.T01 | MTR_1g076930 | 23.684 | 228 | 157 | 7 | 50 | 272 | 2 | 217 | 5.77e-11 | 61.6 |
| MsG0180001393.01.T01 | MTR_4g088200 | 28.774 | 212 | 132 | 7 | 58 | 262 | 33 | 232 | 5.85e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001393.01.T01 | AT5G54160 | 40.800 | 250 | 139 | 4 | 22 | 270 | 1 | 242 | 5.32e-60 | 194 |
| MsG0180001393.01.T01 | AT1G77520 | 43.111 | 225 | 115 | 7 | 54 | 270 | 42 | 261 | 1.18e-52 | 176 |
| MsG0180001393.01.T01 | AT1G51990 | 37.118 | 229 | 140 | 3 | 39 | 266 | 13 | 238 | 1.61e-45 | 157 |
| MsG0180001393.01.T01 | AT1G51990 | 36.245 | 229 | 142 | 3 | 39 | 266 | 13 | 238 | 3.49e-43 | 151 |
| MsG0180001393.01.T01 | AT1G33030 | 37.662 | 231 | 130 | 7 | 45 | 270 | 10 | 231 | 8.27e-41 | 142 |
| MsG0180001393.01.T01 | AT1G33030 | 37.662 | 231 | 130 | 7 | 45 | 270 | 10 | 231 | 1.38e-40 | 142 |
| MsG0180001393.01.T01 | AT1G33030 | 37.662 | 231 | 130 | 7 | 45 | 270 | 10 | 231 | 1.37e-39 | 141 |
| MsG0180001393.01.T01 | AT1G77530 | 40.708 | 226 | 121 | 6 | 54 | 271 | 42 | 262 | 1.86e-38 | 136 |
| MsG0180001393.01.T01 | AT1G63140 | 38.367 | 245 | 130 | 7 | 39 | 271 | 47 | 282 | 7.45e-38 | 135 |
| MsG0180001393.01.T01 | AT1G63140 | 38.525 | 244 | 129 | 7 | 39 | 270 | 47 | 281 | 1.13e-37 | 135 |
| MsG0180001393.01.T01 | AT1G77530 | 40.889 | 225 | 120 | 6 | 54 | 270 | 42 | 261 | 4.71e-37 | 135 |
| MsG0180001393.01.T01 | AT1G63140 | 38.525 | 244 | 129 | 7 | 39 | 270 | 47 | 281 | 7.37e-37 | 135 |
| MsG0180001393.01.T01 | AT1G63140 | 38.525 | 244 | 129 | 7 | 39 | 270 | 27 | 261 | 8.19e-37 | 134 |
| MsG0180001393.01.T01 | AT5G53810 | 36.444 | 225 | 129 | 6 | 55 | 270 | 39 | 258 | 1.37e-32 | 123 |
| MsG0180001393.01.T01 | AT1G21130 | 37.743 | 257 | 140 | 10 | 22 | 270 | 9 | 253 | 1.08e-31 | 119 |
| MsG0180001393.01.T01 | AT1G21130 | 38.132 | 257 | 139 | 11 | 22 | 270 | 9 | 253 | 6.46e-31 | 119 |
| MsG0180001393.01.T01 | AT1G21100 | 36.965 | 257 | 142 | 10 | 22 | 270 | 9 | 253 | 2.63e-29 | 114 |
| MsG0180001393.01.T01 | AT3G53140 | 34.298 | 242 | 143 | 8 | 36 | 270 | 7 | 239 | 1.45e-28 | 112 |
| MsG0180001393.01.T01 | AT1G21110 | 36.434 | 258 | 142 | 10 | 22 | 270 | 9 | 253 | 1.93e-28 | 112 |
| MsG0180001393.01.T01 | AT1G21120 | 36.434 | 258 | 142 | 10 | 22 | 270 | 9 | 253 | 4.16e-28 | 111 |
| MsG0180001393.01.T01 | AT1G21120 | 35.531 | 273 | 153 | 11 | 8 | 270 | 42 | 301 | 5.50e-28 | 111 |
| MsG0180001393.01.T01 | AT1G76790 | 36.709 | 237 | 131 | 9 | 43 | 269 | 17 | 244 | 4.15e-25 | 102 |
| MsG0180001393.01.T01 | AT5G37170 | 35.204 | 196 | 89 | 7 | 82 | 270 | 50 | 214 | 3.06e-23 | 97.4 |
| MsG0180001393.01.T01 | AT5G37170 | 45.161 | 93 | 48 | 2 | 179 | 270 | 24 | 114 | 1.81e-19 | 85.1 |
| MsG0180001393.01.T01 | AT1G62900 | 46.988 | 83 | 44 | 0 | 188 | 270 | 3 | 85 | 4.56e-17 | 78.2 |
| MsG0180001393.01.T01 | AT5G37170 | 53.030 | 66 | 30 | 1 | 206 | 270 | 1 | 66 | 8.73e-16 | 73.9 |
| MsG0180001393.01.T01 | AT4G35150 | 38.889 | 90 | 54 | 1 | 182 | 270 | 108 | 197 | 9.00e-15 | 73.6 |
| MsG0180001393.01.T01 | AT4G35160 | 32.836 | 134 | 81 | 4 | 144 | 270 | 123 | 254 | 2.28e-11 | 63.9 |
Find 47 sgRNAs with CRISPR-Local
Find 65 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCATGAACTTTATGAAAA+TGG | 0.232199 | 1:+20490445 | None:intergenic |
| ATCACCGGCTTATAAATATT+TGG | 0.239790 | 1:-20490424 | MsG0180001393.01.T01:CDS |
| TCTGAATATCCTTCAATAAA+AGG | 0.244422 | 1:-20490243 | MsG0180001393.01.T01:CDS |
| TCAAGCCTCTCAGCCAATTC+AGG | 0.269845 | 1:+20490996 | None:intergenic |
| TGAAAATGGTCATTGTTGTT+AGG | 0.282307 | 1:+20490459 | None:intergenic |
| GGATAAAGATGGAGGCTCTT+TGG | 0.282636 | 1:-20490856 | MsG0180001393.01.T01:CDS |
| GCCAATTCAGGGTGTTGATT+TGG | 0.300679 | 1:+20491008 | None:intergenic |
| TGTTGGAAACTGAGTTTGTT+TGG | 0.332085 | 1:+20491205 | None:intergenic |
| TTCTTTCTTACCATCTTCAT+TGG | 0.332460 | 1:+20490920 | None:intergenic |
| GATAAAGATGGAGGCTCTTT+GGG | 0.338071 | 1:-20490855 | MsG0180001393.01.T01:CDS |
| AGGATTCTTACACTATATAA+AGG | 0.342110 | 1:-20490333 | MsG0180001393.01.T01:CDS |
| GAAAATGGTCATTGTTGTTA+GGG | 0.378056 | 1:+20490460 | None:intergenic |
| ATAGCAGCATTTAGTATTGC+AGG | 0.379466 | 1:+20491119 | None:intergenic |
| TCCAAATCAACACCCTGAAT+TGG | 0.385842 | 1:-20491009 | MsG0180001393.01.T01:CDS |
| GCAAGTGAGAAGAGAGTAAC+TGG | 0.394161 | 1:+20490953 | None:intergenic |
| AACAAAGCAATGGCTCAATC+TGG | 0.399952 | 1:-20490372 | MsG0180001393.01.T01:CDS |
| TACACTATATAAAGGATTTG+AGG | 0.415995 | 1:-20490325 | MsG0180001393.01.T01:CDS |
| ATCGTGGATATCATGATGTT+TGG | 0.437952 | 1:-20490812 | MsG0180001393.01.T01:intron |
| TTCTCCAAATATTTATAAGC+CGG | 0.439608 | 1:+20490420 | None:intergenic |
| GTTTATGCTCTCTCATCAAT+TGG | 0.442550 | 1:-20490894 | MsG0180001393.01.T01:CDS |
| TACTTTGCATTGGATAAAGA+TGG | 0.457504 | 1:-20490867 | MsG0180001393.01.T01:CDS |
| ACACTATATAAAGGATTTGA+GGG | 0.464404 | 1:-20490324 | MsG0180001393.01.T01:CDS |
| CTGGTCCATTAGAAATGAAA+AGG | 0.467725 | 1:-20490353 | MsG0180001393.01.T01:CDS |
| AATTGGTCAATACTTTGCAT+TGG | 0.471367 | 1:-20490877 | MsG0180001393.01.T01:CDS |
| GTTGATGTAGGTGGTGGAGT+AGG | 0.476718 | 1:-20490288 | MsG0180001393.01.T01:CDS |
| TTGATGTAGGTGGTGGAGTA+GGG | 0.487539 | 1:-20490287 | MsG0180001393.01.T01:CDS |
| ACCATCTTCATTGGTACGAA+TGG | 0.502294 | 1:+20490929 | None:intergenic |
| TGGTGCATCTTGAACCACTT+GGG | 0.504233 | 1:+20490203 | None:intergenic |
| CAAGATGCACCAACTCATCC+AGG | 0.511168 | 1:-20490192 | MsG0180001393.01.T01:CDS |
| AAACTGAGTTTGTTTGGAGT+TGG | 0.519524 | 1:+20491211 | None:intergenic |
| TCATAAAGTTCATGGATCAC+CGG | 0.521104 | 1:-20490439 | MsG0180001393.01.T01:CDS |
| CAAGCCTCTCAGCCAATTCA+GGG | 0.537180 | 1:+20490997 | None:intergenic |
| TCCATTCGTACCAATGAAGA+TGG | 0.540221 | 1:-20490930 | MsG0180001393.01.T01:CDS |
| TTGGTGCATCTTGAACCACT+TGG | 0.550736 | 1:+20490202 | None:intergenic |
| ACACTAGTTGATGTAGGTGG+TGG | 0.561944 | 1:-20490294 | MsG0180001393.01.T01:CDS |
| TATATATTACCTGGATGAGT+TGG | 0.568273 | 1:+20490183 | None:intergenic |
| ACTTATGTATATATATTACC+TGG | 0.582676 | 1:+20490174 | None:intergenic |
| TGAACGTATGTTGACTGTGT+TGG | 0.597359 | 1:-20490976 | MsG0180001393.01.T01:CDS |
| CGATGGATTAATGCTGAGAG+TGG | 0.600634 | 1:+20490831 | None:intergenic |
| GGTGCATCTTGAACCACTTG+GGG | 0.609131 | 1:+20490204 | None:intergenic |
| GTCTCAACACTAGTTGATGT+AGG | 0.620089 | 1:-20490300 | MsG0180001393.01.T01:CDS |
| AACACCCTGAATTGGCTGAG+AGG | 0.629156 | 1:-20491001 | MsG0180001393.01.T01:CDS |
| TTTGCATTGGATAAAGATGG+AGG | 0.638338 | 1:-20490864 | MsG0180001393.01.T01:CDS |
| CTCTCAGCATTAATCCATCG+TGG | 0.651626 | 1:-20490828 | MsG0180001393.01.T01:CDS |
| ACAAACTCAGTTTCCAACAG+AGG | 0.673127 | 1:-20491201 | MsG0180001393.01.T01:CDS |
| AAACATCATGATATCCACGA+TGG | 0.677658 | 1:+20490814 | None:intergenic |
| TCAACACTAGTTGATGTAGG+TGG | 0.684114 | 1:-20490297 | MsG0180001393.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCTTTTTTTGTTTTGT+TGG | - | Chr1:20490721-20490740 | MsG0180001393.01.T01:intron | 15.0% |
| !!! | TGACTATTTTTACTTTATTA+TGG | - | Chr1:20490843-20490862 | MsG0180001393.01.T01:CDS | 15.0% |
| !!! | AAATTAATGCCTTTTATTGA+AGG | + | Chr1:20491226-20491245 | None:intergenic | 20.0% |
| !!! | ATTATGTTGTTTCTTTTTTC+AGG | - | Chr1:20490948-20490967 | MsG0180001393.01.T01:CDS | 20.0% |
| !!! | TCAAATTTTTAACAAAGCAA+TGG | - | Chr1:20491075-20491094 | MsG0180001393.01.T01:CDS | 20.0% |
| ! | ACACTATATAAAGGATTTGA+GGG | - | Chr1:20491133-20491152 | MsG0180001393.01.T01:CDS | 25.0% |
| ! | AGGATTCTTACACTATATAA+AGG | - | Chr1:20491124-20491143 | MsG0180001393.01.T01:CDS | 25.0% |
| ! | ATCCATGAACTTTATGAAAA+TGG | + | Chr1:20491015-20491034 | None:intergenic | 25.0% |
| ! | TACACTATATAAAGGATTTG+AGG | - | Chr1:20491132-20491151 | MsG0180001393.01.T01:CDS | 25.0% |
| ! | TCTGAATATCCTTCAATAAA+AGG | - | Chr1:20491214-20491233 | MsG0180001393.01.T01:CDS | 25.0% |
| ! | TTCTCCAAATATTTATAAGC+CGG | + | Chr1:20491040-20491059 | None:intergenic | 25.0% |
| !! | AGAATCCTTTTCATTTCTAA+TGG | + | Chr1:20491112-20491131 | None:intergenic | 25.0% |
| !! | CGATCGAATTTAAAATTACT+AGG | + | Chr1:20490901-20490920 | None:intergenic | 25.0% |
| !! | TAATTTTAAATTCGATCGCT+GGG | - | Chr1:20490903-20490922 | MsG0180001393.01.T01:CDS | 25.0% |
| !! | TTATTATGGTGTTAACATTC+CGG | - | Chr1:20490857-20490876 | MsG0180001393.01.T01:CDS | 25.0% |
| !! | TTATTCAAACTGTTTCTTCA+AGG | - | Chr1:20490682-20490701 | MsG0180001393.01.T01:intron | 25.0% |
| AATTGGTCAATACTTTGCAT+TGG | - | Chr1:20490580-20490599 | MsG0180001393.01.T01:intron | 30.0% | |
| TACTTTGCATTGGATAAAGA+TGG | - | Chr1:20490590-20490609 | MsG0180001393.01.T01:intron | 30.0% | |
| TATATATTACCTGGATGAGT+TGG | + | Chr1:20491277-20491296 | None:intergenic | 30.0% | |
| TTCTTTCTTACCATCTTCAT+TGG | + | Chr1:20490540-20490559 | None:intergenic | 30.0% | |
| ! | GAAAATGGTCATTGTTGTTA+GGG | + | Chr1:20491000-20491019 | None:intergenic | 30.0% |
| ! | GACCATTTTCATAAAGTTCA+TGG | - | Chr1:20491010-20491029 | MsG0180001393.01.T01:CDS | 30.0% |
| ! | GTAATTTTAAATTCGATCGC+TGG | - | Chr1:20490902-20490921 | MsG0180001393.01.T01:CDS | 30.0% |
| ! | TGAAAATGGTCATTGTTGTT+AGG | + | Chr1:20491001-20491020 | None:intergenic | 30.0% |
| !! | AATCGTTTTGAGCAATACTT+AGG | + | Chr1:20490931-20490950 | None:intergenic | 30.0% |
| !! | ATCACCGGCTTATAAATATT+TGG | - | Chr1:20491033-20491052 | MsG0180001393.01.T01:CDS | 30.0% |
| !! | TTTTGCACTTTCTCTAGTTT+TGG | + | Chr1:20490207-20490226 | None:intergenic | 30.0% |
| !!! | CGTTGTTACTATGTTTTAGT+AGG | - | Chr1:20490309-20490328 | MsG0180001393.01.T01:CDS | 30.0% |
| !!! | TAATTTTGATTTACCCCAAG+TGG | - | Chr1:20491240-20491259 | MsG0180001393.01.T01:CDS | 30.0% |
| AAACATCATGATATCCACGA+TGG | + | Chr1:20490646-20490665 | None:intergenic | 35.0% | |
| ATAGCAGCATTTAGTATTGC+AGG | + | Chr1:20490341-20490360 | None:intergenic | 35.0% | |
| ATCGTGGATATCATGATGTT+TGG | - | Chr1:20490645-20490664 | MsG0180001393.01.T01:intron | 35.0% | |
| CTGGTCCATTAGAAATGAAA+AGG | - | Chr1:20491104-20491123 | MsG0180001393.01.T01:CDS | 35.0% | |
| GTTTATGCTCTCTCATCAAT+TGG | - | Chr1:20490563-20490582 | MsG0180001393.01.T01:intron | 35.0% | |
| TCATAAAGTTCATGGATCAC+CGG | - | Chr1:20491018-20491037 | MsG0180001393.01.T01:CDS | 35.0% | |
| TTTGCATTGGATAAAGATGG+AGG | - | Chr1:20490593-20490612 | MsG0180001393.01.T01:intron | 35.0% | |
| ! | AAACTGAGTTTGTTTGGAGT+TGG | + | Chr1:20490249-20490268 | None:intergenic | 35.0% |
| ! | GTTAACATTCCGGCTTTTAA+CGG | - | Chr1:20490867-20490886 | MsG0180001393.01.T01:CDS | 35.0% |
| ! | TGTTGGAAACTGAGTTTGTT+TGG | + | Chr1:20490255-20490274 | None:intergenic | 35.0% |
| !! | TCAACTTTTTCTACCTCTGT+TGG | + | Chr1:20490272-20490291 | None:intergenic | 35.0% |
| AACAAAGCAATGGCTCAATC+TGG | - | Chr1:20491085-20491104 | MsG0180001393.01.T01:CDS | 40.0% | |
| ACAAACTCAGTTTCCAACAG+AGG | - | Chr1:20490256-20490275 | MsG0180001393.01.T01:CDS | 40.0% | |
| ACCATCTTCATTGGTACGAA+TGG | + | Chr1:20490531-20490550 | None:intergenic | 40.0% | |
| GATAAAGATGGAGGCTCTTT+GGG | - | Chr1:20490602-20490621 | MsG0180001393.01.T01:intron | 40.0% | |
| GATCTTCTTCCGTTAAAAGC+CGG | + | Chr1:20490879-20490898 | None:intergenic | 40.0% | |
| TCCAAATCAACACCCTGAAT+TGG | - | Chr1:20490448-20490467 | MsG0180001393.01.T01:CDS | 40.0% | |
| TCCATTCGTACCAATGAAGA+TGG | - | Chr1:20490527-20490546 | MsG0180001393.01.T01:intron | 40.0% | |
| ! | GTCTCAACACTAGTTGATGT+AGG | - | Chr1:20491157-20491176 | MsG0180001393.01.T01:CDS | 40.0% |
| ! | TCAACACTAGTTGATGTAGG+TGG | - | Chr1:20491160-20491179 | MsG0180001393.01.T01:CDS | 40.0% |
| ! | TGAACGTATGTTGACTGTGT+TGG | - | Chr1:20490481-20490500 | MsG0180001393.01.T01:CDS | 40.0% |
| CTCTCAGCATTAATCCATCG+TGG | - | Chr1:20490629-20490648 | MsG0180001393.01.T01:intron | 45.0% | |
| GCAAGTGAGAAGAGAGTAAC+TGG | + | Chr1:20490507-20490526 | None:intergenic | 45.0% | |
| GGATAAAGATGGAGGCTCTT+TGG | - | Chr1:20490601-20490620 | MsG0180001393.01.T01:intron | 45.0% | |
| TGGTGCATCTTGAACCACTT+GGG | + | Chr1:20491257-20491276 | None:intergenic | 45.0% | |
| TTGGTGCATCTTGAACCACT+TGG | + | Chr1:20491258-20491277 | None:intergenic | 45.0% | |
| ! | ACACTAGTTGATGTAGGTGG+TGG | - | Chr1:20491163-20491182 | MsG0180001393.01.T01:CDS | 45.0% |
| !! | CGATGGATTAATGCTGAGAG+TGG | + | Chr1:20490629-20490648 | None:intergenic | 45.0% |
| !! | GCCAATTCAGGGTGTTGATT+TGG | + | Chr1:20490452-20490471 | None:intergenic | 45.0% |
| !! | TTGATGTAGGTGGTGGAGTA+GGG | - | Chr1:20491170-20491189 | MsG0180001393.01.T01:CDS | 45.0% |
| AACACCCTGAATTGGCTGAG+AGG | - | Chr1:20490456-20490475 | MsG0180001393.01.T01:CDS | 50.0% | |
| CAAGATGCACCAACTCATCC+AGG | - | Chr1:20491265-20491284 | MsG0180001393.01.T01:CDS | 50.0% | |
| CAAGCCTCTCAGCCAATTCA+GGG | + | Chr1:20490463-20490482 | None:intergenic | 50.0% | |
| GGTGCATCTTGAACCACTTG+GGG | + | Chr1:20491256-20491275 | None:intergenic | 50.0% | |
| TCAAGCCTCTCAGCCAATTC+AGG | + | Chr1:20490464-20490483 | None:intergenic | 50.0% | |
| !! | GTTGATGTAGGTGGTGGAGT+AGG | - | Chr1:20491169-20491188 | MsG0180001393.01.T01:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 20490176 | 20491303 | 20490176 | ID=MsG0180001393.01;Name=MsG0180001393.01 |
| Chr1 | mRNA | 20490176 | 20491303 | 20490176 | ID=MsG0180001393.01.T01;Parent=MsG0180001393.01;Name=MsG0180001393.01.T01;_AED=0.50;_eAED=0.51;_QI=0|1|0|1|1|1|2|0|274 |
| Chr1 | exon | 20490813 | 20491303 | 20490813 | ID=MsG0180001393.01.T01:exon:26207;Parent=MsG0180001393.01.T01 |
| Chr1 | exon | 20490176 | 20490509 | 20490176 | ID=MsG0180001393.01.T01:exon:26206;Parent=MsG0180001393.01.T01 |
| Chr1 | CDS | 20490813 | 20491303 | 20490813 | ID=MsG0180001393.01.T01:cds;Parent=MsG0180001393.01.T01 |
| Chr1 | CDS | 20490176 | 20490509 | 20490176 | ID=MsG0180001393.01.T01:cds;Parent=MsG0180001393.01.T01 |
| Gene Sequence |
| Protein sequence |
