Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001799.01.T01 | XP_003590040.1 | 99.357 | 311 | 2 | 0 | 1 | 311 | 1 | 311 | 0 | 646 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001799.01.T01 | P48489 | 83.278 | 299 | 49 | 1 | 1 | 298 | 15 | 313 | 0 | 538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001799.01.T01 | G7I5D1 | 99.357 | 311 | 2 | 0 | 1 | 311 | 1 | 311 | 0.0 | 646 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001799.01 | MsG0280008738.01 | 0.808733 | 2.679482e-50 | 1.543790e-47 |
| MsG0180001799.01 | MsG0280008932.01 | 0.812692 | 3.731039e-51 | 2.388230e-48 |
| MsG0180001799.01 | MsG0380017401.01 | 0.800803 | 1.214325e-48 | 5.706668e-46 |
| MsG0180001799.01 | MsG0480018648.01 | 0.811661 | 6.260110e-51 | 3.897730e-48 |
| MsG0180001799.01 | MsG0480019167.01 | 0.802200 | 6.281516e-49 | 3.058217e-46 |
| MsG0180001799.01 | MsG0680034235.01 | 0.830969 | 2.176826e-55 | 2.329644e-52 |
| MsG0180001799.01 | MsG0780041482.01 | 0.801560 | 8.498670e-49 | 4.071133e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001799.01.T01 | MTR_1g043240 | 99.357 | 311 | 2 | 0 | 1 | 311 | 1 | 311 | 0.0 | 646 |
| MsG0180001799.01.T01 | MTR_1g074880 | 82.866 | 321 | 54 | 1 | 1 | 321 | 1 | 320 | 0.0 | 566 |
| MsG0180001799.01.T01 | MTR_1g074880 | 83.861 | 316 | 50 | 1 | 1 | 316 | 1 | 315 | 0.0 | 566 |
| MsG0180001799.01.T01 | MTR_1g079950 | 83.439 | 314 | 51 | 1 | 1 | 314 | 1 | 313 | 0.0 | 565 |
| MsG0180001799.01.T01 | MTR_1g079950 | 83.439 | 314 | 51 | 1 | 1 | 314 | 30 | 342 | 0.0 | 565 |
| MsG0180001799.01.T01 | MTR_1g079950 | 83.439 | 314 | 51 | 1 | 1 | 314 | 1 | 313 | 0.0 | 564 |
| MsG0180001799.01.T01 | MTR_1g079950 | 83.439 | 314 | 51 | 1 | 1 | 314 | 1 | 313 | 0.0 | 563 |
| MsG0180001799.01.T01 | MTR_7g116380 | 83.758 | 314 | 50 | 1 | 1 | 314 | 1 | 313 | 0.0 | 557 |
| MsG0180001799.01.T01 | MTR_7g116380 | 83.758 | 314 | 50 | 1 | 1 | 314 | 1 | 313 | 0.0 | 556 |
| MsG0180001799.01.T01 | MTR_5g081230 | 80.380 | 316 | 52 | 2 | 1 | 315 | 17 | 323 | 0.0 | 533 |
| MsG0180001799.01.T01 | MTR_8g098980 | 75.161 | 310 | 75 | 2 | 1 | 309 | 1 | 309 | 3.10e-180 | 501 |
| MsG0180001799.01.T01 | MTR_8g005010 | 75.517 | 290 | 71 | 0 | 6 | 295 | 4 | 293 | 4.31e-173 | 482 |
| MsG0180001799.01.T01 | MTR_7g112870 | 71.987 | 307 | 81 | 2 | 1 | 307 | 5 | 306 | 1.38e-168 | 471 |
| MsG0180001799.01.T01 | MTR_1g079950 | 84.314 | 255 | 39 | 1 | 60 | 314 | 34 | 287 | 2.48e-168 | 471 |
| MsG0180001799.01.T01 | MTR_1g074880 | 82.510 | 263 | 45 | 1 | 59 | 321 | 4 | 265 | 4.12e-167 | 466 |
| MsG0180001799.01.T01 | MTR_1g074880 | 83.721 | 258 | 41 | 1 | 59 | 316 | 4 | 260 | 1.16e-166 | 465 |
| MsG0180001799.01.T01 | MTR_5g093990 | 48.134 | 268 | 138 | 1 | 26 | 292 | 17 | 284 | 1.18e-93 | 281 |
| MsG0180001799.01.T01 | MTR_8g062430 | 45.455 | 286 | 154 | 2 | 26 | 310 | 20 | 304 | 6.66e-92 | 276 |
| MsG0180001799.01.T01 | MTR_7g107310 | 47.232 | 271 | 141 | 2 | 26 | 295 | 27 | 296 | 1.69e-91 | 276 |
| MsG0180001799.01.T01 | MTR_5g037200 | 45.804 | 286 | 153 | 2 | 26 | 310 | 20 | 304 | 4.36e-91 | 275 |
| MsG0180001799.01.T01 | MTR_8g085610 | 46.125 | 271 | 144 | 2 | 26 | 295 | 22 | 291 | 8.75e-89 | 269 |
| MsG0180001799.01.T01 | MTR_8g085610 | 44.815 | 270 | 147 | 2 | 30 | 298 | 2 | 270 | 6.47e-87 | 263 |
| MsG0180001799.01.T01 | MTR_1g039380 | 44.487 | 263 | 143 | 3 | 25 | 285 | 15 | 276 | 7.79e-87 | 263 |
| MsG0180001799.01.T01 | MTR_1g039380 | 44.980 | 249 | 134 | 3 | 39 | 285 | 5 | 252 | 2.34e-84 | 256 |
| MsG0180001799.01.T01 | MTR_1g089370 | 47.143 | 280 | 134 | 5 | 30 | 295 | 552 | 831 | 6.46e-80 | 261 |
| MsG0180001799.01.T01 | MTR_2g087530 | 46.230 | 305 | 145 | 8 | 9 | 295 | 531 | 834 | 1.40e-77 | 254 |
| MsG0180001799.01.T01 | MTR_4g050540 | 46.230 | 305 | 145 | 8 | 9 | 295 | 649 | 952 | 3.36e-77 | 255 |
| MsG0180001799.01.T01 | MTR_2g087530 | 46.230 | 305 | 145 | 8 | 9 | 295 | 644 | 947 | 3.65e-77 | 255 |
| MsG0180001799.01.T01 | MTR_3g452710 | 42.292 | 253 | 139 | 4 | 33 | 279 | 195 | 446 | 4.59e-67 | 218 |
| MsG0180001799.01.T01 | MTR_3g452710 | 42.292 | 253 | 139 | 4 | 33 | 279 | 262 | 513 | 2.17e-66 | 218 |
| MsG0180001799.01.T01 | MTR_2g100130 | 40.000 | 265 | 151 | 5 | 22 | 279 | 102 | 365 | 1.38e-63 | 207 |
| MsG0180001799.01.T01 | MTR_2g100130 | 40.000 | 265 | 151 | 5 | 22 | 279 | 172 | 435 | 1.11e-62 | 206 |
| MsG0180001799.01.T01 | MTR_2g100130 | 40.000 | 265 | 151 | 5 | 22 | 279 | 201 | 464 | 2.03e-62 | 206 |
| MsG0180001799.01.T01 | MTR_2g100130 | 40.000 | 265 | 151 | 5 | 22 | 279 | 211 | 474 | 2.13e-62 | 207 |
| MsG0180001799.01.T01 | MTR_2g100130 | 40.000 | 265 | 151 | 5 | 22 | 279 | 211 | 474 | 2.25e-62 | 207 |
| MsG0180001799.01.T01 | MTR_2g100130 | 38.014 | 292 | 161 | 7 | 22 | 295 | 172 | 461 | 2.60e-61 | 203 |
| MsG0180001799.01.T01 | MTR_2g100130 | 40.000 | 265 | 150 | 6 | 22 | 279 | 211 | 473 | 4.10e-61 | 203 |
| MsG0180001799.01.T01 | MTR_2g100130 | 40.392 | 255 | 144 | 5 | 22 | 269 | 211 | 464 | 1.31e-60 | 202 |
| MsG0180001799.01.T01 | MTR_2g100160 | 41.532 | 248 | 137 | 5 | 39 | 279 | 138 | 384 | 1.90e-56 | 189 |
| MsG0180001799.01.T01 | MTR_5g037200 | 50.299 | 167 | 82 | 1 | 26 | 191 | 20 | 186 | 2.77e-56 | 182 |
| MsG0180001799.01.T01 | MTR_8g072600 | 31.519 | 349 | 160 | 12 | 33 | 314 | 100 | 436 | 1.05e-39 | 145 |
| MsG0180001799.01.T01 | MTR_8g072600 | 33.468 | 248 | 119 | 7 | 33 | 235 | 100 | 346 | 2.49e-32 | 124 |
| MsG0180001799.01.T01 | MTR_2g099710 | 29.042 | 334 | 181 | 14 | 31 | 320 | 211 | 532 | 3.02e-23 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180001799.01.T01 | AT2G39840 | 81.940 | 299 | 53 | 1 | 1 | 298 | 14 | 312 | 0.0 | 532 |
| MsG0180001799.01.T01 | AT2G29400 | 81.188 | 303 | 53 | 3 | 1 | 300 | 15 | 316 | 0.0 | 523 |
| MsG0180001799.01.T01 | AT5G59160 | 80.263 | 304 | 57 | 3 | 1 | 302 | 9 | 311 | 0.0 | 520 |
| MsG0180001799.01.T01 | AT5G59160 | 80.263 | 304 | 57 | 3 | 1 | 302 | 9 | 311 | 0.0 | 520 |
| MsG0180001799.01.T01 | AT5G59160 | 80.263 | 304 | 57 | 3 | 1 | 302 | 9 | 311 | 0.0 | 520 |
| MsG0180001799.01.T01 | AT3G46820 | 79.000 | 300 | 61 | 1 | 1 | 298 | 9 | 308 | 0.0 | 511 |
| MsG0180001799.01.T01 | AT5G43380 | 76.997 | 313 | 71 | 1 | 1 | 313 | 1 | 312 | 0.0 | 510 |
| MsG0180001799.01.T01 | AT5G43380 | 76.997 | 313 | 71 | 1 | 1 | 313 | 1 | 312 | 0.0 | 508 |
| MsG0180001799.01.T01 | AT5G43380 | 76.997 | 313 | 71 | 1 | 1 | 313 | 1 | 312 | 0.0 | 508 |
| MsG0180001799.01.T01 | AT1G64040 | 77.705 | 305 | 66 | 2 | 1 | 304 | 1 | 304 | 0.0 | 508 |
| MsG0180001799.01.T01 | AT4G11240 | 72.816 | 309 | 82 | 2 | 1 | 308 | 1 | 308 | 5.21e-175 | 488 |
| MsG0180001799.01.T01 | AT5G27840 | 71.613 | 310 | 79 | 2 | 1 | 303 | 9 | 316 | 3.12e-169 | 473 |
| MsG0180001799.01.T01 | AT3G05580 | 72.903 | 310 | 75 | 2 | 1 | 303 | 9 | 316 | 5.22e-169 | 473 |
| MsG0180001799.01.T01 | AT5G27840 | 70.032 | 317 | 89 | 2 | 1 | 313 | 9 | 323 | 9.61e-169 | 472 |
| MsG0180001799.01.T01 | AT5G27840 | 70.032 | 317 | 89 | 2 | 1 | 313 | 9 | 323 | 9.61e-169 | 472 |
| MsG0180001799.01.T01 | AT5G27840 | 71.753 | 308 | 81 | 2 | 1 | 304 | 9 | 314 | 1.03e-168 | 473 |
| MsG0180001799.01.T01 | AT3G05580 | 73.984 | 246 | 62 | 1 | 1 | 246 | 9 | 252 | 1.14e-135 | 386 |
| MsG0180001799.01.T01 | AT5G55260 | 48.507 | 268 | 137 | 1 | 26 | 292 | 17 | 284 | 3.22e-96 | 288 |
| MsG0180001799.01.T01 | AT4G26720 | 46.269 | 268 | 143 | 1 | 26 | 292 | 17 | 284 | 6.64e-94 | 281 |
| MsG0180001799.01.T01 | AT2G42500 | 47.080 | 274 | 143 | 2 | 26 | 298 | 27 | 299 | 9.01e-93 | 279 |
| MsG0180001799.01.T01 | AT1G10430 | 45.105 | 286 | 155 | 2 | 26 | 310 | 20 | 304 | 2.11e-91 | 275 |
| MsG0180001799.01.T01 | AT1G10430 | 45.105 | 286 | 155 | 2 | 26 | 310 | 20 | 304 | 2.11e-91 | 275 |
| MsG0180001799.01.T01 | AT3G58500 | 46.350 | 274 | 145 | 2 | 26 | 298 | 27 | 299 | 3.11e-91 | 275 |
| MsG0180001799.01.T01 | AT1G69960 | 45.105 | 286 | 155 | 2 | 26 | 310 | 21 | 305 | 2.54e-90 | 273 |
| MsG0180001799.01.T01 | AT1G59830 | 44.755 | 286 | 156 | 2 | 26 | 310 | 20 | 304 | 6.77e-90 | 271 |
| MsG0180001799.01.T01 | AT5G55260 | 42.071 | 309 | 137 | 2 | 26 | 292 | 17 | 325 | 1.16e-87 | 267 |
| MsG0180001799.01.T01 | AT3G19980 | 44.487 | 263 | 143 | 3 | 25 | 285 | 15 | 276 | 1.67e-86 | 263 |
| MsG0180001799.01.T01 | AT1G50370 | 44.106 | 263 | 144 | 3 | 25 | 285 | 15 | 276 | 3.21e-86 | 262 |
| MsG0180001799.01.T01 | AT4G03080 | 47.143 | 280 | 134 | 5 | 30 | 295 | 554 | 833 | 5.49e-80 | 261 |
| MsG0180001799.01.T01 | AT2G27210 | 45.902 | 305 | 146 | 8 | 9 | 295 | 655 | 958 | 9.63e-79 | 259 |
| MsG0180001799.01.T01 | AT1G08420 | 46.230 | 305 | 145 | 8 | 9 | 295 | 661 | 964 | 1.74e-78 | 259 |
| MsG0180001799.01.T01 | AT1G08420 | 46.230 | 305 | 145 | 8 | 9 | 295 | 666 | 969 | 1.82e-78 | 259 |
| MsG0180001799.01.T01 | AT1G59830 | 48.908 | 229 | 115 | 2 | 26 | 253 | 20 | 247 | 2.38e-78 | 240 |
| MsG0180001799.01.T01 | AT2G27210 | 45.902 | 305 | 146 | 8 | 9 | 295 | 650 | 953 | 3.67e-76 | 252 |
| MsG0180001799.01.T01 | AT2G42500 | 48.416 | 221 | 112 | 2 | 79 | 298 | 33 | 252 | 3.72e-74 | 230 |
| MsG0180001799.01.T01 | AT1G03445 | 43.662 | 284 | 143 | 7 | 26 | 294 | 476 | 757 | 3.55e-73 | 241 |
| MsG0180001799.01.T01 | AT1G03445 | 43.662 | 284 | 143 | 7 | 26 | 294 | 476 | 757 | 3.70e-73 | 241 |
| MsG0180001799.01.T01 | AT2G42810 | 42.688 | 253 | 138 | 4 | 33 | 279 | 197 | 448 | 1.07e-65 | 215 |
| MsG0180001799.01.T01 | AT2G42810 | 42.688 | 253 | 138 | 4 | 33 | 279 | 197 | 448 | 1.07e-65 | 215 |
| MsG0180001799.01.T01 | AT2G42810 | 42.688 | 253 | 138 | 4 | 33 | 279 | 197 | 448 | 1.07e-65 | 215 |
| MsG0180001799.01.T01 | AT2G42810 | 42.688 | 253 | 138 | 4 | 33 | 279 | 251 | 502 | 2.87e-65 | 215 |
| MsG0180001799.01.T01 | AT2G42810 | 42.688 | 253 | 138 | 4 | 33 | 279 | 250 | 501 | 3.00e-65 | 215 |
| MsG0180001799.01.T01 | AT2G42500 | 46.939 | 147 | 74 | 3 | 26 | 168 | 27 | 173 | 1.22e-42 | 146 |
| MsG0180001799.01.T01 | AT2G42500 | 46.104 | 154 | 77 | 4 | 26 | 175 | 27 | 178 | 3.67e-42 | 144 |
| MsG0180001799.01.T01 | AT2G42500 | 48.921 | 139 | 67 | 3 | 26 | 160 | 27 | 165 | 6.72e-42 | 144 |
| MsG0180001799.01.T01 | AT5G63870 | 30.499 | 341 | 169 | 14 | 33 | 306 | 52 | 391 | 7.19e-35 | 132 |
| MsG0180001799.01.T01 | AT5G63870 | 30.499 | 341 | 169 | 14 | 33 | 306 | 52 | 391 | 7.19e-35 | 132 |
| MsG0180001799.01.T01 | AT1G48120 | 31.208 | 298 | 145 | 6 | 31 | 268 | 628 | 925 | 2.35e-29 | 119 |
| MsG0180001799.01.T01 | AT5G63870 | 31.855 | 248 | 127 | 9 | 33 | 239 | 52 | 298 | 1.03e-27 | 110 |
| MsG0180001799.01.T01 | AT5G10900 | 27.869 | 305 | 156 | 12 | 52 | 314 | 222 | 504 | 3.52e-21 | 94.7 |
| MsG0180001799.01.T01 | AT5G10900 | 27.869 | 305 | 156 | 12 | 52 | 314 | 222 | 504 | 4.14e-21 | 94.7 |
| MsG0180001799.01.T01 | AT5G10900 | 27.869 | 305 | 156 | 12 | 52 | 314 | 222 | 504 | 4.49e-21 | 94.4 |
Find 71 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTAACATTTGCAGATTC+TGG | 0.124846 | 1:-27166869 | None:intergenic |
| TGTTGTTACTTTCTTGATTA+TGG | 0.141574 | 1:+27163970 | MsG0180001799.01.T01:exon |
| CGTTCCAACTACTTGTTCTT+AGG | 0.194579 | 1:+27165465 | MsG0180001799.01.T01:CDS |
| GAATCCGTAGACGCGGTTTA+TGG | 0.235532 | 1:-27165601 | None:intergenic |
| TAGTTACCACATATCTTAAT+TGG | 0.282650 | 1:-27164148 | None:intergenic |
| TGTTTCAAACTATGCAATTC+AGG | 0.295203 | 1:-27165747 | None:intergenic |
| TCAAACTCTCCACAGTAATT+AGG | 0.300714 | 1:-27166692 | None:intergenic |
| ATTCATGGTTTCCTCTTAGA+AGG | 0.315726 | 1:-27165572 | None:intergenic |
| CATGCTCAAATAGGCTTAAT+AGG | 0.316064 | 1:-27165428 | None:intergenic |
| TCACATAAAAGACCAGTTTC+AGG | 0.342012 | 1:-27165801 | None:intergenic |
| CGTGGTGTTTCATTTACTTT+TGG | 0.343305 | 1:+27165876 | MsG0180001799.01.T01:CDS |
| GATCATAAAATGCCTAAGTT+TGG | 0.343821 | 1:+27166782 | MsG0180001799.01.T01:CDS |
| TTTGAAGCAGCCTAATTTGT+TGG | 0.351554 | 1:+27164114 | MsG0180001799.01.T01:CDS |
| GGAATCCACCATGCTCAAAT+AGG | 0.355827 | 1:-27165437 | None:intergenic |
| CTTGATTTGTAGAGCTCATC+AGG | 0.356629 | 1:+27165941 | MsG0180001799.01.T01:CDS |
| GATTCTACGACGAATGTAAA+AGG | 0.362876 | 1:+27165619 | MsG0180001799.01.T01:CDS |
| TTCTTGATGGTATCATTAAT+AGG | 0.371158 | 1:+27164002 | MsG0180001799.01.T01:CDS |
| GCCTCAAGTTCCAACAAATT+AGG | 0.376724 | 1:-27164124 | None:intergenic |
| TTTCTATAGGTTGTTGAAGA+TGG | 0.384025 | 1:+27166623 | MsG0180001799.01.T01:intron |
| AGATTGTTTCAACTGTTTGC+CGG | 0.384374 | 1:+27165674 | MsG0180001799.01.T01:CDS |
| AATAGGTTGCTTGATGTTAG+AGG | 0.400822 | 1:+27164019 | MsG0180001799.01.T01:CDS |
| GTAAAAGGAGATTCAATGTA+AGG | 0.404199 | 1:+27165634 | MsG0180001799.01.T01:CDS |
| TAGTAAAGATGTTCATGGTT+GGG | 0.406576 | 1:+27165842 | MsG0180001799.01.T01:CDS |
| CCTAGTGAAGTTCCTGAAAC+TGG | 0.411793 | 1:+27165789 | MsG0180001799.01.T01:CDS |
| AAAGTAACAACAAAATTTAG+AGG | 0.412264 | 1:-27163959 | None:intergenic |
| TAGAGGAAGACCTGGGAAAC+AGG | 0.412490 | 1:+27164036 | MsG0180001799.01.T01:CDS |
| TCAGGAACTTCACTAGGCCT+TGG | 0.425421 | 1:-27165783 | None:intergenic |
| GGTTTATGGAAGCACATTCA+TGG | 0.431076 | 1:-27165587 | None:intergenic |
| ATGGAACGAAGGGTTCTTGA+TGG | 0.433784 | 1:+27163989 | MsG0180001799.01.T01:CDS |
| TAGGAGTACAACTTCATTCA+AGG | 0.442692 | 1:+27166808 | MsG0180001799.01.T01:CDS |
| CAACCATGAACATCTTTACT+AGG | 0.446291 | 1:-27165840 | None:intergenic |
| GATCCTAGTAAAGATGTTCA+TGG | 0.464856 | 1:+27165837 | MsG0180001799.01.T01:CDS |
| TTTCAACTGTTTGCCGGTCG+CGG | 0.466909 | 1:+27165680 | MsG0180001799.01.T01:CDS |
| GGAGATTCAATGTAAGGGTA+TGG | 0.470527 | 1:+27165640 | MsG0180001799.01.T01:CDS |
| TGTGGAGAGTTTGACAATGC+TGG | 0.482312 | 1:+27166701 | MsG0180001799.01.T01:CDS |
| GCCTAATTTGTTGGAACTTG+AGG | 0.482437 | 1:+27164123 | MsG0180001799.01.T01:CDS |
| CCAGTTTCAGGAACTTCACT+AGG | 0.482799 | 1:-27165789 | None:intergenic |
| GAAAGCTGAACCTGTTTCCC+AGG | 0.504004 | 1:-27164046 | None:intergenic |
| GCTTCCATAAACCGCGTCTA+CGG | 0.507566 | 1:+27165597 | MsG0180001799.01.T01:CDS |
| TCATCAATGATAGCCGCGAC+CGG | 0.507597 | 1:-27165693 | None:intergenic |
| AGTAAAGATGTTCATGGTTG+GGG | 0.512041 | 1:+27165843 | MsG0180001799.01.T01:CDS |
| GTCACCTAAGAACAAGTAGT+TGG | 0.527172 | 1:-27165469 | None:intergenic |
| CTAGTAAAGATGTTCATGGT+TGG | 0.530691 | 1:+27165841 | MsG0180001799.01.T01:CDS |
| ATTTCAGATATTAAAACCTG+TGG | 0.538843 | 1:+27166760 | MsG0180001799.01.T01:CDS |
| TTTCTTGATTATGGAACGAA+GGG | 0.547346 | 1:+27163979 | MsG0180001799.01.T01:exon |
| GTACTCCTAAAACCAAACTT+AGG | 0.547748 | 1:-27166794 | None:intergenic |
| AGACCGTGGAAAACAAAGCT+TGG | 0.556235 | 1:+27165497 | MsG0180001799.01.T01:CDS |
| CTTTCTTGATTATGGAACGA+AGG | 0.562095 | 1:+27163978 | MsG0180001799.01.T01:exon |
| AACAGATAAGTAATTTGCCA+AGG | 0.564405 | 1:+27165766 | MsG0180001799.01.T01:CDS |
| CTTGATGTTAGAGGAAGACC+TGG | 0.565129 | 1:+27164028 | MsG0180001799.01.T01:CDS |
| TAAAAGGAGATTCAATGTAA+GGG | 0.574355 | 1:+27165635 | MsG0180001799.01.T01:CDS |
| AGATTGCAGAATTTCTTCAA+AGG | 0.583212 | 1:+27165907 | MsG0180001799.01.T01:CDS |
| GTGGAGAGTTTGACAATGCT+GGG | 0.589015 | 1:+27166702 | MsG0180001799.01.T01:CDS |
| AAACAGGTTCAGCTTTCAGA+GGG | 0.596976 | 1:+27164052 | MsG0180001799.01.T01:CDS |
| CTATTAAGCCTATTTGAGCA+TGG | 0.607320 | 1:+27165429 | MsG0180001799.01.T01:CDS |
| GAGGCACCAATTAAGATATG+TGG | 0.612070 | 1:+27164142 | MsG0180001799.01.T01:CDS |
| TTACTAGAATAAAGAACATG+TGG | 0.616653 | 1:-27163918 | None:intergenic |
| GAAAAGATTATATGTATGCA+TGG | 0.616807 | 1:+27165714 | MsG0180001799.01.T01:CDS |
| AGAAATCAAGCAGCTTTGTG+TGG | 0.618536 | 1:+27164075 | MsG0180001799.01.T01:CDS |
| GAAACAGGTTCAGCTTTCAG+AGG | 0.619149 | 1:+27164051 | MsG0180001799.01.T01:CDS |
| TTAAGCCTATTTGAGCATGG+TGG | 0.624084 | 1:+27165432 | MsG0180001799.01.T01:CDS |
| ACAAGTAGTTGGAACGTGGA+GGG | 0.641155 | 1:-27165458 | None:intergenic |
| AACAAGTAGTTGGAACGTGG+AGG | 0.651695 | 1:-27165459 | None:intergenic |
| ATAGGTCAGAATATTGACCA+TGG | 0.659335 | 1:-27165410 | None:intergenic |
| CGTCGTAGAATCCGTAGACG+CGG | 0.666220 | 1:-27165608 | None:intergenic |
| AAGAACAAGTAGTTGGAACG+TGG | 0.682620 | 1:-27165462 | None:intergenic |
| TTAGGTGACTATGTAGACCG+TGG | 0.684853 | 1:+27165483 | MsG0180001799.01.T01:CDS |
| AAGATTATATGTATGCATGG+TGG | 0.692863 | 1:+27165717 | MsG0180001799.01.T01:CDS |
| TGGAGAGTTTGACAATGCTG+GGG | 0.744427 | 1:+27166703 | MsG0180001799.01.T01:CDS |
| GGTTGGGGAGTTAATGAACG+TGG | 0.749507 | 1:+27165858 | MsG0180001799.01.T01:CDS |
| TTGATGTTAGAGGAAGACCT+GGG | 0.755374 | 1:+27164029 | MsG0180001799.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAGTAATAGTTT+AGG | + | Chr1:27164859-27164878 | MsG0180001799.01.T01:intron | 10.0% |
| !! | TTATTATATTAACATAGTTT+AGG | + | Chr1:27164824-27164843 | MsG0180001799.01.T01:intron | 10.0% |
| !!! | AGACAATTTTTTATTTATTT+TGG | - | Chr1:27165323-27165342 | None:intergenic | 10.0% |
| !!! | TTAAAATTTATGTTCATTTT+TGG | + | Chr1:27165032-27165051 | MsG0180001799.01.T01:intron | 10.0% |
| !! | AAGAAAATAAAATCACTTAT+TGG | + | Chr1:27164211-27164230 | MsG0180001799.01.T01:intron | 15.0% |
| !! | TTTAGTAATATCTAAATTTG+AGG | + | Chr1:27166030-27166049 | MsG0180001799.01.T01:intron | 15.0% |
| !!! | AATTTAATTGCTAATGTTTT+AGG | - | Chr1:27165141-27165160 | None:intergenic | 15.0% |
| !!! | AATTTGCTTTTATTTATTCA+AGG | + | Chr1:27166426-27166445 | MsG0180001799.01.T01:intron | 15.0% |
| !!! | ATATTTAAACTTTGATTTGT+TGG | - | Chr1:27166548-27166567 | None:intergenic | 15.0% |
| !!! | TAATTATTTTTCAACTCTTT+AGG | + | Chr1:27165169-27165188 | MsG0180001799.01.T01:intron | 15.0% |
| !! | AAAAAATTGTCTACTAAAAC+AGG | + | Chr1:27165331-27165350 | MsG0180001799.01.T01:intron | 20.0% |
| !! | AAAAATTGTCTACTAAAACA+GGG | + | Chr1:27165332-27165351 | MsG0180001799.01.T01:intron | 20.0% |
| !! | AAAAGAAAGAGAAAAAAATG+AGG | - | Chr1:27164182-27164201 | None:intergenic | 20.0% |
| !! | AAAGTAACAACAAAATTTAG+AGG | - | Chr1:27163962-27163981 | None:intergenic | 20.0% |
| !! | AATTTAGAGGAAGAAAAAAA+AGG | - | Chr1:27163949-27163968 | None:intergenic | 20.0% |
| !! | ATTTATTCAAGGACTAAATT+AGG | + | Chr1:27166437-27166456 | MsG0180001799.01.T01:intron | 20.0% |
| !! | CAATGTTTGATATATAACAA+CGG | + | Chr1:27166189-27166208 | MsG0180001799.01.T01:intron | 20.0% |
| !! | GAAAAAAAATCAGGAAATTA+CGG | - | Chr1:27166396-27166415 | None:intergenic | 20.0% |
| !! | GGAACTAAAAACATATTTAA+TGG | - | Chr1:27165988-27166007 | None:intergenic | 20.0% |
| !! | TAATAGTTTAGGAACTAAAT+TGG | + | Chr1:27164870-27164889 | MsG0180001799.01.T01:intron | 20.0% |
| !! | TCTCAAAAAAGTTAAAAACA+TGG | - | Chr1:27164948-27164967 | None:intergenic | 20.0% |
| !!! | ATCAAATTTTGTTACATTCA+AGG | + | Chr1:27164296-27164315 | MsG0180001799.01.T01:intron | 20.0% |
| !!! | ATTTTTGGTCTAATTGAAAT+TGG | + | Chr1:27165047-27165066 | MsG0180001799.01.T01:intron | 20.0% |
| !!! | GTATTCACTCTAAAAAATTA+AGG | + | Chr1:27166490-27166509 | MsG0180001799.01.T01:intron | 20.0% |
| !!! | TCAAATTTTGTTACATTCAA+GGG | + | Chr1:27164297-27164316 | MsG0180001799.01.T01:intron | 20.0% |
| !!! | TTCACTATGTTATTATTTTC+AGG | + | Chr1:27165381-27165400 | MsG0180001799.01.T01:intron | 20.0% |
| !!! | TTTTAGTCAATTTAAGTGTA+TGG | + | Chr1:27164234-27164253 | MsG0180001799.01.T01:intron | 20.0% |
| ! | ACTCATATTCAATGATTAGT+GGG | - | Chr1:27164508-27164527 | None:intergenic | 25.0% |
| ! | ATCCAAAATCTTAACTCTTA+AGG | - | Chr1:27166233-27166252 | None:intergenic | 25.0% |
| ! | ATTTCAGATATTAAAACCTG+TGG | + | Chr1:27166760-27166779 | MsG0180001799.01.T01:CDS | 25.0% |
| ! | GAAAAGATTATATGTATGCA+TGG | + | Chr1:27165714-27165733 | MsG0180001799.01.T01:CDS | 25.0% |
| ! | TAAAAGGAGATTCAATGTAA+GGG | + | Chr1:27165635-27165654 | MsG0180001799.01.T01:CDS | 25.0% |
| ! | TAGTTACCACATATCTTAAT+TGG | - | Chr1:27164151-27164170 | None:intergenic | 25.0% |
| ! | TCAAACTTTCACGATTAAAT+AGG | - | Chr1:27166009-27166028 | None:intergenic | 25.0% |
| ! | TCGTTTATGAGCTAAATTAA+TGG | - | Chr1:27164633-27164652 | None:intergenic | 25.0% |
| ! | TTACTAGAATAAAGAACATG+TGG | - | Chr1:27163921-27163940 | None:intergenic | 25.0% |
| !! | CAAATTTTGTTACATTCAAG+GGG | + | Chr1:27164298-27164317 | MsG0180001799.01.T01:intron | 25.0% |
| !! | CAATCTATATCAACTTTTTG+GGG | + | Chr1:27164564-27164583 | MsG0180001799.01.T01:intron | 25.0% |
| !! | CCAATCTATATCAACTTTTT+GGG | + | Chr1:27164563-27164582 | MsG0180001799.01.T01:intron | 25.0% |
| !! | GGTATATTTTTCTACTTTAG+TGG | + | Chr1:27164981-27165000 | MsG0180001799.01.T01:intron | 25.0% |
| !! | TCCAATCTATATCAACTTTT+TGG | + | Chr1:27164562-27164581 | MsG0180001799.01.T01:intron | 25.0% |
| !! | TCTTGTGTATTGTTTTCTAT+AGG | + | Chr1:27166610-27166629 | MsG0180001799.01.T01:intron | 25.0% |
| !! | TTAAGAGTTAAGATTTTGGA+TGG | + | Chr1:27166232-27166251 | MsG0180001799.01.T01:intron | 25.0% |
| !! | TTAGAAGGAAAAAGTTTTCA+GGG | - | Chr1:27165560-27165579 | None:intergenic | 25.0% |
| !! | TTCTTGATGGTATCATTAAT+AGG | + | Chr1:27164002-27164021 | MsG0180001799.01.T01:CDS | 25.0% |
| !!! | TGTTGTTACTTTCTTGATTA+TGG | + | Chr1:27163970-27163989 | MsG0180001799.01.T01:exon | 25.0% |
| !!! | TTATTTTTCAACTCTTTAGG+AGG | + | Chr1:27165172-27165191 | MsG0180001799.01.T01:intron | 25.0% |
| !!! | TTCAGGGTATTTTATTTTGT+AGG | - | Chr1:27165544-27165563 | None:intergenic | 25.0% |
| AAGATTATATGTATGCATGG+TGG | + | Chr1:27165717-27165736 | MsG0180001799.01.T01:CDS | 30.0% | |
| AATGAAAAACCACATAAGCA+TGG | - | Chr1:27164260-27164279 | None:intergenic | 30.0% | |
| AGATTGCAGAATTTCTTCAA+AGG | + | Chr1:27165907-27165926 | MsG0180001799.01.T01:CDS | 30.0% | |
| ATCCAAGTATACAAGCATTT+GGG | - | Chr1:27166072-27166091 | None:intergenic | 30.0% | |
| GACTCATATTCAATGATTAG+TGG | - | Chr1:27164509-27164528 | None:intergenic | 30.0% | |
| GATCATAAAATGCCTAAGTT+TGG | + | Chr1:27166782-27166801 | MsG0180001799.01.T01:CDS | 30.0% | |
| GTAAAAGGAGATTCAATGTA+AGG | + | Chr1:27165634-27165653 | MsG0180001799.01.T01:CDS | 30.0% | |
| GTTGATATAGATTGGATGTT+TGG | - | Chr1:27164558-27164577 | None:intergenic | 30.0% | |
| TAAGTAGTAACCCAACATAT+AGG | + | Chr1:27164449-27164468 | MsG0180001799.01.T01:intron | 30.0% | |
| TAGTAAAGATGTTCATGGTT+GGG | + | Chr1:27165842-27165861 | MsG0180001799.01.T01:CDS | 30.0% | |
| TAGTTTAGGAACTAAATTGG+TGG | + | Chr1:27164873-27164892 | MsG0180001799.01.T01:intron | 30.0% | |
| TGTTTCAAACTATGCAATTC+AGG | - | Chr1:27165750-27165769 | None:intergenic | 30.0% | |
| TTTCTATAGGTTGTTGAAGA+TGG | + | Chr1:27166623-27166642 | MsG0180001799.01.T01:intron | 30.0% | |
| TTTCTTGATTATGGAACGAA+GGG | + | Chr1:27163979-27163998 | MsG0180001799.01.T01:exon | 30.0% | |
| ! | AACAGATAAGTAATTTGCCA+AGG | + | Chr1:27165766-27165785 | MsG0180001799.01.T01:CDS | 30.0% |
| ! | AATTTTCTTAGCGACCAAAT+CGG | - | Chr1:27166329-27166348 | None:intergenic | 30.0% |
| ! | CTTAGAAGGAAAAAGTTTTC+AGG | - | Chr1:27165561-27165580 | None:intergenic | 30.0% |
| ! | GTCTTTTATGTGATCTTTTG+TGG | + | Chr1:27165811-27165830 | MsG0180001799.01.T01:CDS | 30.0% |
| ! | TAGTCCTTTGAAAGAAAATC+AGG | + | Chr1:27166360-27166379 | MsG0180001799.01.T01:intron | 30.0% |
| ! | TGCCTTAAGAGTTAAGATTT+TGG | + | Chr1:27166228-27166247 | MsG0180001799.01.T01:intron | 30.0% |
| ! | TTGTCCTGATTTTCTTTCAA+AGG | - | Chr1:27166367-27166386 | None:intergenic | 30.0% |
| !! | CCCAAAAAGTTGATATAGAT+TGG | - | Chr1:27164566-27164585 | None:intergenic | 30.0% |
| !! | GAAAACTTTTTCCTTCTAAG+AGG | + | Chr1:27165561-27165580 | MsG0180001799.01.T01:CDS | 30.0% |
| !! | TTATTTTCAGGAGATATCCA+TGG | + | Chr1:27165393-27165412 | MsG0180001799.01.T01:intron | 30.0% |
| !!! | AAATGCCTAAGTTTGGTTTT+AGG | + | Chr1:27166789-27166808 | MsG0180001799.01.T01:CDS | 30.0% |
| !!! | TAGCATCACTTTTGAAACAA+AGG | - | Chr1:27163871-27163890 | None:intergenic | 30.0% |
| !!! | TTTTGAGAAGTACTGTTTGT+TGG | + | Chr1:27164960-27164979 | MsG0180001799.01.T01:intron | 30.0% |
| AAAAACTACGAGACCTTGTT+TGG | + | Chr1:27166122-27166141 | MsG0180001799.01.T01:intron | 35.0% | |
| AATAGGTTGCTTGATGTTAG+AGG | + | Chr1:27164019-27164038 | MsG0180001799.01.T01:CDS | 35.0% | |
| AGATTGTTTCAACTGTTTGC+CGG | + | Chr1:27165674-27165693 | MsG0180001799.01.T01:CDS | 35.0% | |
| AGTAAAGATGTTCATGGTTG+GGG | + | Chr1:27165843-27165862 | MsG0180001799.01.T01:CDS | 35.0% | |
| AGTCAAACTTGAACCAAACA+AGG | - | Chr1:27166138-27166157 | None:intergenic | 35.0% | |
| AGTCGTCGTGAAAAAAAATC+AGG | - | Chr1:27166405-27166424 | None:intergenic | 35.0% | |
| ATAGGTCAGAATATTGACCA+TGG | - | Chr1:27165413-27165432 | None:intergenic | 35.0% | |
| ATTCATGGTTTCCTCTTAGA+AGG | - | Chr1:27165575-27165594 | None:intergenic | 35.0% | |
| CAACCATGAACATCTTTACT+AGG | - | Chr1:27165843-27165862 | None:intergenic | 35.0% | |
| CATCCAAGTATACAAGCATT+TGG | - | Chr1:27166073-27166092 | None:intergenic | 35.0% | |
| CATGCTCAAATAGGCTTAAT+AGG | - | Chr1:27165431-27165450 | None:intergenic | 35.0% | |
| CTAGTAAAGATGTTCATGGT+TGG | + | Chr1:27165841-27165860 | MsG0180001799.01.T01:CDS | 35.0% | |
| CTATTAAGCCTATTTGAGCA+TGG | + | Chr1:27165429-27165448 | MsG0180001799.01.T01:CDS | 35.0% | |
| CTTTCTTGATTATGGAACGA+AGG | + | Chr1:27163978-27163997 | MsG0180001799.01.T01:exon | 35.0% | |
| GATCCTAGTAAAGATGTTCA+TGG | + | Chr1:27165837-27165856 | MsG0180001799.01.T01:CDS | 35.0% | |
| GATTCTACGACGAATGTAAA+AGG | + | Chr1:27165619-27165638 | MsG0180001799.01.T01:CDS | 35.0% | |
| GTACTCCTAAAACCAAACTT+AGG | - | Chr1:27166797-27166816 | None:intergenic | 35.0% | |
| GTTACATTCAAGGGGATATA+AGG | + | Chr1:27164306-27164325 | MsG0180001799.01.T01:intron | 35.0% | |
| TCAAACTCTCCACAGTAATT+AGG | - | Chr1:27166695-27166714 | None:intergenic | 35.0% | |
| TCACATAAAAGACCAGTTTC+AGG | - | Chr1:27165804-27165823 | None:intergenic | 35.0% | |
| TGAGCAATTGCCTATATGTT+GGG | - | Chr1:27164462-27164481 | None:intergenic | 35.0% | |
| TGCTTAACATTTGCAGATTC+TGG | - | Chr1:27166872-27166891 | None:intergenic | 35.0% | |
| ! | ATCTTAACTCTTAAGGCACT+AGG | - | Chr1:27166226-27166245 | None:intergenic | 35.0% |
| ! | ATTTAGAATTTCCTCCCTTG+AGG | + | Chr1:27165203-27165222 | MsG0180001799.01.T01:intron | 35.0% |
| ! | ATTTTCTTAGCGACCAAATC+GGG | - | Chr1:27166328-27166347 | None:intergenic | 35.0% |
| ! | CGTGGTGTTTCATTTACTTT+TGG | + | Chr1:27165876-27165895 | MsG0180001799.01.T01:CDS | 35.0% |
| ! | GTTACACCTCTGTTTTCTAT+AGG | + | Chr1:27165069-27165088 | MsG0180001799.01.T01:intron | 35.0% |
| ! | TAGGAGTACAACTTCATTCA+AGG | + | Chr1:27166808-27166827 | MsG0180001799.01.T01:CDS | 35.0% |
| ! | TTAGGCATTTTATGATCCAC+AGG | - | Chr1:27166779-27166798 | None:intergenic | 35.0% |
| ! | TTGTTTGGTTCAAGTTTGAC+TGG | + | Chr1:27166137-27166156 | MsG0180001799.01.T01:intron | 35.0% |
| ! | TTTGAAGCAGCCTAATTTGT+TGG | + | Chr1:27164114-27164133 | MsG0180001799.01.T01:CDS | 35.0% |
| ! | TTTTAGCATTTTGCTGAGAG+TGG | - | Chr1:27164393-27164412 | None:intergenic | 35.0% |
| ! | TTTTCTGCTCCTAATTACTG+TGG | + | Chr1:27166683-27166702 | MsG0180001799.01.T01:CDS | 35.0% |
| ! | TTTTTCCTGGGAACTAAACT+CGG | - | Chr1:27166107-27166126 | None:intergenic | 35.0% |
| !! | TGTTTGGAACTTTTGATCGT+TGG | - | Chr1:27164542-27164561 | None:intergenic | 35.0% |
| !!! | TTTCCAAGCTTTGTTTTCCA+CGG | - | Chr1:27165503-27165522 | None:intergenic | 35.0% |
| AAACAGGTTCAGCTTTCAGA+GGG | + | Chr1:27164052-27164071 | MsG0180001799.01.T01:CDS | 40.0% | |
| AAGAACAAGTAGTTGGAACG+TGG | - | Chr1:27165465-27165484 | None:intergenic | 40.0% | |
| AGCCCAAATGCTTGTATACT+TGG | + | Chr1:27166067-27166086 | MsG0180001799.01.T01:intron | 40.0% | |
| AGTTTGAGCTTGAAACCTCA+AGG | - | Chr1:27165221-27165240 | None:intergenic | 40.0% | |
| ATATAGGCAATTGCTCAGCT+AGG | + | Chr1:27164465-27164484 | MsG0180001799.01.T01:intron | 40.0% | |
| CAAAAGAGATCATGTCTACG+AGG | - | Chr1:27165260-27165279 | None:intergenic | 40.0% | |
| CATTCAAGGGGATATAAGGT+TGG | + | Chr1:27164310-27164329 | MsG0180001799.01.T01:intron | 40.0% | |
| CGTTCCAACTACTTGTTCTT+AGG | + | Chr1:27165465-27165484 | MsG0180001799.01.T01:CDS | 40.0% | |
| CTGAGCAATTGCCTATATGT+TGG | - | Chr1:27164463-27164482 | None:intergenic | 40.0% | |
| GCCTCAAGTTCCAACAAATT+AGG | - | Chr1:27164127-27164146 | None:intergenic | 40.0% | |
| GGAGATTCAATGTAAGGGTA+TGG | + | Chr1:27165640-27165659 | MsG0180001799.01.T01:CDS | 40.0% | |
| GTAGTGCCTATAGAAAACAG+AGG | - | Chr1:27165078-27165097 | None:intergenic | 40.0% | |
| GTCACCTAAGAACAAGTAGT+TGG | - | Chr1:27165472-27165491 | None:intergenic | 40.0% | |
| GTTCAGATCTCTTGTGGAAT+CGG | + | Chr1:27166254-27166273 | MsG0180001799.01.T01:intron | 40.0% | |
| GTTTGAGCTTGAAACCTCAA+GGG | - | Chr1:27165220-27165239 | None:intergenic | 40.0% | |
| TTAAGCCTATTTGAGCATGG+TGG | + | Chr1:27165432-27165451 | MsG0180001799.01.T01:CDS | 40.0% | |
| TTGATGTTAGAGGAAGACCT+GGG | + | Chr1:27164029-27164048 | MsG0180001799.01.T01:CDS | 40.0% | |
| TTGTGTGTGCAAGTTTACGA+GGG | + | Chr1:27164338-27164357 | MsG0180001799.01.T01:intron | 40.0% | |
| ! | AAGGGGATATAAGGTTGGTT+TGG | + | Chr1:27164315-27164334 | MsG0180001799.01.T01:intron | 40.0% |
| ! | AAGGTCTCGTAGTTTTTCCT+GGG | - | Chr1:27166119-27166138 | None:intergenic | 40.0% |
| ! | AGAAATCAAGCAGCTTTGTG+TGG | + | Chr1:27164075-27164094 | MsG0180001799.01.T01:CDS | 40.0% |
| ! | GAGGCACCAATTAAGATATG+TGG | + | Chr1:27164142-27164161 | MsG0180001799.01.T01:CDS | 40.0% |
| ! | GGTTTATGGAAGCACATTCA+TGG | - | Chr1:27165590-27165609 | None:intergenic | 40.0% |
| ! | GTCTACTAAAACAGGGTACT+AGG | + | Chr1:27165339-27165358 | MsG0180001799.01.T01:intron | 40.0% |
| !! | CTTGATTTGTAGAGCTCATC+AGG | + | Chr1:27165941-27165960 | MsG0180001799.01.T01:CDS | 40.0% |
| !! | GCCTAATTTGTTGGAACTTG+AGG | + | Chr1:27164123-27164142 | MsG0180001799.01.T01:CDS | 40.0% |
| AACAAGTAGTTGGAACGTGG+AGG | - | Chr1:27165462-27165481 | None:intergenic | 45.0% | |
| ACAAGTAGTTGGAACGTGGA+GGG | - | Chr1:27165461-27165480 | None:intergenic | 45.0% | |
| AGACCGTGGAAAACAAAGCT+TGG | + | Chr1:27165497-27165516 | MsG0180001799.01.T01:CDS | 45.0% | |
| AGTGTATGGCCATGCTTATG+TGG | + | Chr1:27164248-27164267 | MsG0180001799.01.T01:intron | 45.0% | |
| ATGGAACGAAGGGTTCTTGA+TGG | + | Chr1:27163989-27164008 | MsG0180001799.01.T01:CDS | 45.0% | |
| ATGTCTACGAGGTTTCAGCT+TGG | - | Chr1:27165249-27165268 | None:intergenic | 45.0% | |
| CCAGTTTCAGGAACTTCACT+AGG | - | Chr1:27165792-27165811 | None:intergenic | 45.0% | |
| CCTAGTGAAGTTCCTGAAAC+TGG | + | Chr1:27165789-27165808 | MsG0180001799.01.T01:CDS | 45.0% | |
| CTTGATGTTAGAGGAAGACC+TGG | + | Chr1:27164028-27164047 | MsG0180001799.01.T01:CDS | 45.0% | |
| GAAACAGGTTCAGCTTTCAG+AGG | + | Chr1:27164051-27164070 | MsG0180001799.01.T01:CDS | 45.0% | |
| GGAATCCACCATGCTCAAAT+AGG | - | Chr1:27165440-27165459 | None:intergenic | 45.0% | |
| GTGGAGAGTTTGACAATGCT+GGG | + | Chr1:27166702-27166721 | MsG0180001799.01.T01:CDS | 45.0% | |
| GTTGTGTGTGCAAGTTTACG+AGG | + | Chr1:27164337-27164356 | MsG0180001799.01.T01:intron | 45.0% | |
| TCAATCCAACAGACCCGATT+TGG | + | Chr1:27166312-27166331 | MsG0180001799.01.T01:intron | 45.0% | |
| TGGAGAGTTTGACAATGCTG+GGG | + | Chr1:27166703-27166722 | MsG0180001799.01.T01:CDS | 45.0% | |
| TGGATGGTTCAGATCTCTTG+TGG | + | Chr1:27166248-27166267 | MsG0180001799.01.T01:intron | 45.0% | |
| TGTGGAGAGTTTGACAATGC+TGG | + | Chr1:27166701-27166720 | MsG0180001799.01.T01:CDS | 45.0% | |
| TTACGAGGGCAGTGATAAGA+TGG | + | Chr1:27164352-27164371 | MsG0180001799.01.T01:intron | 45.0% | |
| TTAGGTGACTATGTAGACCG+TGG | + | Chr1:27165483-27165502 | MsG0180001799.01.T01:CDS | 45.0% | |
| ! | CAAGGTCTCGTAGTTTTTCC+TGG | - | Chr1:27166120-27166139 | None:intergenic | 45.0% |
| !! | ATAAATGAAATTTATAAATT+TGG | + | Chr1:27164710-27164729 | MsG0180001799.01.T01:intron | 5.0% |
| !!! | ATTTTTTTATTTTTCTTAAA+GGG | + | Chr1:27165110-27165129 | MsG0180001799.01.T01:intron | 5.0% |
| !!! | TATTTTTTTATTTTTCTTAA+AGG | + | Chr1:27165109-27165128 | MsG0180001799.01.T01:intron | 5.0% |
| AGGGCAGTGATAAGATGGTC+GGG | + | Chr1:27164357-27164376 | MsG0180001799.01.T01:intron | 50.0% | |
| ATGTTGCCTTTGACGTCCCT+TGG | + | Chr1:27166289-27166308 | MsG0180001799.01.T01:intron | 50.0% | |
| GAAAGCTGAACCTGTTTCCC+AGG | - | Chr1:27164049-27164068 | None:intergenic | 50.0% | |
| GAATCCGTAGACGCGGTTTA+TGG | - | Chr1:27165604-27165623 | None:intergenic | 50.0% | |
| GAGGGCAGTGATAAGATGGT+CGG | + | Chr1:27164356-27164375 | MsG0180001799.01.T01:intron | 50.0% | |
| GATTGACCAAGGGACGTCAA+AGG | - | Chr1:27166298-27166317 | None:intergenic | 50.0% | |
| GCTTCCATAAACCGCGTCTA+CGG | + | Chr1:27165597-27165616 | MsG0180001799.01.T01:CDS | 50.0% | |
| GGGTCTGTTGGATTGACCAA+GGG | - | Chr1:27166308-27166327 | None:intergenic | 50.0% | |
| GGTTGGGGAGTTAATGAACG+TGG | + | Chr1:27165858-27165877 | MsG0180001799.01.T01:CDS | 50.0% | |
| TAGAGGAAGACCTGGGAAAC+AGG | + | Chr1:27164036-27164055 | MsG0180001799.01.T01:CDS | 50.0% | |
| TCAGGAACTTCACTAGGCCT+TGG | - | Chr1:27165786-27165805 | None:intergenic | 50.0% | |
| TCATCAATGATAGCCGCGAC+CGG | - | Chr1:27165696-27165715 | None:intergenic | 50.0% | |
| TGAGCTTGAAACCTCAAGGG+AGG | - | Chr1:27165217-27165236 | None:intergenic | 50.0% | |
| TTTCAACTGTTTGCCGGTCG+CGG | + | Chr1:27165680-27165699 | MsG0180001799.01.T01:CDS | 50.0% | |
| ! | GAAGACCGAGTTTAGTTCCC+AGG | + | Chr1:27166099-27166118 | MsG0180001799.01.T01:intron | 50.0% |
| AGCGACCAAATCGGGTCTGT+TGG | - | Chr1:27166320-27166339 | None:intergenic | 55.0% | |
| CGGGTCTGTTGGATTGACCA+AGG | - | Chr1:27166309-27166328 | None:intergenic | 55.0% | |
| CGTCGTAGAATCCGTAGACG+CGG | - | Chr1:27165611-27165630 | None:intergenic | 55.0% | |
| GGGCAGTGATAAGATGGTCG+GGG | + | Chr1:27164358-27164377 | MsG0180001799.01.T01:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 27163849 | 27166901 | 27163849 | ID=MsG0180001799.01;Name=MsG0180001799.01 |
| Chr1 | mRNA | 27163849 | 27166901 | 27163849 | ID=MsG0180001799.01.T01;Parent=MsG0180001799.01;Name=MsG0180001799.01.T01;_AED=0.44;_eAED=0.44;_QI=140|1|0.66|1|1|1|3|0|334 |
| Chr1 | exon | 27166632 | 27166901 | 27166632 | ID=MsG0180001799.01.T01:exon:34931;Parent=MsG0180001799.01.T01 |
| Chr1 | exon | 27165403 | 27165962 | 27165403 | ID=MsG0180001799.01.T01:exon:34930;Parent=MsG0180001799.01.T01 |
| Chr1 | exon | 27163849 | 27164163 | 27163849 | ID=MsG0180001799.01.T01:exon:34929;Parent=MsG0180001799.01.T01 |
| Chr1 | five_prime_UTR | 27163849 | 27163988 | 27163849 | ID=MsG0180001799.01.T01:five_prime_utr;Parent=MsG0180001799.01.T01 |
| Chr1 | CDS | 27163989 | 27164163 | 27163989 | ID=MsG0180001799.01.T01:cds;Parent=MsG0180001799.01.T01 |
| Chr1 | CDS | 27165403 | 27165962 | 27165403 | ID=MsG0180001799.01.T01:cds;Parent=MsG0180001799.01.T01 |
| Chr1 | CDS | 27166632 | 27166901 | 27166632 | ID=MsG0180001799.01.T01:cds;Parent=MsG0180001799.01.T01 |
| Gene Sequence |
| Protein sequence |
