AlfalfaGEDB | MsG0180002006.01

M. sativa cultivar ZhongmuNo.1 / MsG0180002006.01

KEGG: -
GO: GO:0004672 GO:0005515 GO:0005524 GO:0006468
PFAM: PF00069 PF08263 PF13855

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002006.01.T01	XP_013467236.1	96.861	1115	32	1	413	1527	1	1112	0	2176

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002006.01.T01	O49318	63.336	1121	389	11	417	1521	5	1119	0	1356

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002006.01.T01	A0A072VT18	96.861	1115	32	1	413	1527	1	1112	0.0	2176

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048036.01	MsG0180002006.01	0.801137	1.037842e-48	4.919027e-46
MsG0080048486.01	MsG0180002006.01	0.823165	1.604521e-53	1.370923e-50
MsG0080048487.01	MsG0180002006.01	0.820539	6.500955e-53	5.158366e-50
MsG0080048488.01	MsG0180002006.01	0.823249	1.533572e-53	1.313341e-50
MsG0080048489.01	MsG0180002006.01	0.821264	4.428664e-53	3.585331e-50
MsG0080048887.01	MsG0180002006.01	-0.808129	3.604956e-50	2.044541e-47
MsG0080048917.01	MsG0180002006.01	-0.815189	1.049895e-51	7.188925e-49
MsG0080048918.01	MsG0180002006.01	-0.819988	8.695293e-53	6.795019e-50
MsG0080049024.01	MsG0180002006.01	-0.823676	1.218405e-53	1.056280e-50
MsG0080049038.01	MsG0180002006.01	-0.816619	5.036412e-52	3.586455e-49

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PPI

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Gene1	Gene2	Type
MsG0580029630.01	MsG0180002006.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002006.01.T01	MTR_1g047670	96.861	1115	32	1	413	1527	1	1112	0.0	2176
MsG0180002006.01.T01	MTR_1g079520	55.405	1110	424	15	410	1508	1	1050	0.0	1089
MsG0180002006.01.T01	MTR_2g070020	55.106	1087	467	10	427	1506	15	1087	0.0	1074
MsG0180002006.01.T01	MTR_7g059285	38.806	1072	585	16	465	1508	50	1078	0.0	668
MsG0180002006.01.T01	MTR_4g094790	38.113	1081	584	14	497	1502	179	1249	0.0	645
MsG0180002006.01.T01	MTR_4g094790	34.731	668	382	5	449	1114	36	651	4.20e-88	315
MsG0180002006.01.T01	MTR_4g094790	32.676	355	218	6	405	757	513	848	1.17e-35	149
MsG0180002006.01.T01	MTR_4g105370	38.347	1077	605	15	438	1503	21	1049	0.0	643
MsG0180002006.01.T01	MTR_5g045910	37.311	1123	585	22	431	1508	20	1068	0.0	634
MsG0180002006.01.T01	MTR_2g437730	36.984	1114	604	19	450	1488	30	1120	0.0	632

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002006.01.T01	AT2G33170	63.336	1121	389	11	417	1521	5	1119	0.0	1356
MsG0180002006.01.T01	AT2G33170	63.336	1121	389	11	417	1521	5	1119	0.0	1356
MsG0180002006.01.T01	AT5G63930	63.721	1075	372	8	441	1509	24	1086	0.0	1317
MsG0180002006.01.T01	AT5G63930	64.321	1023	352	7	493	1509	7	1022	0.0	1269
MsG0180002006.01.T01	AT5G63930	37.500	272	145	2	482	752	380	627	4.76e-32	136
MsG0180002006.01.T01	AT1G17230	52.898	1087	485	7	427	1504	7	1075	0.0	1086
MsG0180002006.01.T01	AT1G17230	52.898	1087	485	7	427	1504	7	1075	0.0	1085
MsG0180002006.01.T01	AT1G17230	51.580	981	450	6	427	1398	7	971	0.0	945
MsG0180002006.01.T01	AT4G20140	40.135	1039	572	16	490	1497	212	1231	0.0	674
MsG0180002006.01.T01	AT4G20140	35.972	581	324	4	580	1113	61	640	1.85e-83	301

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Find 355 sgRNAs with CRISPR-Local

Find 628 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTCCGGTTCAACCAA+TGG	0.523631	1:-30886068	MsG0180002006.01.T01:CDS
AAAATTTACTTACGCCAAAG+CGG	0.662332	1:+30892772	None:intergenic
AAACTCCAAATCCCCTAGGT+CGG	0.617702	1:+30893342	None:intergenic
AAAGGAAGACAAATTCCGGA+TGG	0.645473	1:-30892937	MsG0180002006.01.T01:CDS
AAAGTAGGAGATTTGAACCT+TGG	0.506820	1:+30886848	None:intergenic
AAATCGATGTCCGCAGTTGC+TGG	0.396863	1:-30886583	MsG0180002006.01.T01:CDS
AAATGTTGGGCTGATTTGCC+AGG	0.520993	1:-30893842	MsG0180002006.01.T01:CDS
AAATTAAGCGAAACAACCAC+TGG	0.606263	1:+30889250	None:intergenic
AAATTTACTTACGCCAAAGC+GGG	0.517286	1:+30892773	None:intergenic
AACACAACATCGCGCATTGA+TGG	0.492267	1:+30885869	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAGTCCCTGTAACATA+AGG	+	Chr1:30887763-30887782	None:intergenic	30.0%
AAAATTTACTTACGCCAAAG+CGG	+	Chr1:30886495-30886514	None:intergenic	30.0%
AACACTAAAAGGGTCTTTAT+TGG	+	Chr1:30888729-30888748	None:intergenic	30.0%
AAGAACATAAACTAGATTGC+AGG	+	Chr1:30887032-30887051	None:intergenic	30.0%
AAGAATAATTTGGTTGAAGG+AGG	-	Chr1:30885732-30885751	MsG0180002006.01.T01:three_prime_UTR	30.0%
AAGAGATAAAAGAGTCTGTT+TGG	-	Chr1:30885997-30886016	MsG0180002006.01.T01:CDS	30.0%
AATTACGTACTAGTATTCAG+TGG	-	Chr1:30885701-30885720	MsG0180002006.01.T01:three_prime_UTR	30.0%
ACAATAATGCGATCAATCAA+AGG	+	Chr1:30886945-30886964	None:intergenic	30.0%
ACTTTGTAAATGGTTGTAGA+TGG	-	Chr1:30887194-30887213	MsG0180002006.01.T01:CDS	30.0%
AGAAACAAAAAAGGAGAAAG+AGG	+	Chr1:30886609-30886628	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	30885377	30893909	30885377	ID=MsG0180002006.01;Name=MsG0180002006.01
Chr1	mRNA	30885377	30893909	30885377	ID=MsG0180002006.01.T01;Parent=MsG0180002006.01;Name=MsG0180002006.01.T01;_AED=0.22;_eAED=0.22;_QI=0\|0.12\|0.22\|1\|1\|1\|9\|404\|1527
Chr1	exon	30885377	30886169	30885377	ID=MsG0180002006.01.T01:exon:42792;Parent=MsG0180002006.01.T01
Chr1	exon	30886560	30889533	30886560	ID=MsG0180002006.01.T01:exon:42791;Parent=MsG0180002006.01.T01
Chr1	exon	30891621	30891796	30891621	ID=MsG0180002006.01.T01:exon:42790;Parent=MsG0180002006.01.T01
Chr1	exon	30891887	30892064	30891887	ID=MsG0180002006.01.T01:exon:42789;Parent=MsG0180002006.01.T01
Chr1	exon	30892460	30892572	30892460	ID=MsG0180002006.01.T01:exon:42788;Parent=MsG0180002006.01.T01
Chr1	exon	30892785	30893024	30892785	ID=MsG0180002006.01.T01:exon:42787;Parent=MsG0180002006.01.T01
Chr1	exon	30893221	30893483	30893221	ID=MsG0180002006.01.T01:exon:42786;Parent=MsG0180002006.01.T01
Chr1	exon	30893564	30893658	30893564	ID=MsG0180002006.01.T01:exon:42785;Parent=MsG0180002006.01.T01
Chr1	exon	30893754	30893909	30893754	ID=MsG0180002006.01.T01:exon:42784;Parent=MsG0180002006.01.T01
Chr1	CDS	30893754	30893909	30893754	ID=MsG0180002006.01.T01:cds;Parent=MsG0180002006.01.T01
Chr1	CDS	30893564	30893658	30893564	ID=MsG0180002006.01.T01:cds;Parent=MsG0180002006.01.T01
Chr1	CDS	30893221	30893483	30893221	ID=MsG0180002006.01.T01:cds;Parent=MsG0180002006.01.T01
Chr1	CDS	30892785	30893024	30892785	ID=MsG0180002006.01.T01:cds;Parent=MsG0180002006.01.T01
Chr1	CDS	30892460	30892572	30892460	ID=MsG0180002006.01.T01:cds;Parent=MsG0180002006.01.T01
Chr1	CDS	30891887	30892064	30891887	ID=MsG0180002006.01.T01:cds;Parent=MsG0180002006.01.T01
Chr1	CDS	30891621	30891796	30891621	ID=MsG0180002006.01.T01:cds;Parent=MsG0180002006.01.T01
Chr1	CDS	30886560	30889533	30886560	ID=MsG0180002006.01.T01:cds;Parent=MsG0180002006.01.T01
Chr1	CDS	30885781	30886169	30885781	ID=MsG0180002006.01.T01:cds;Parent=MsG0180002006.01.T01
Chr1	three_prime_UTR	30885377	30885780	30885377	ID=MsG0180002006.01.T01:three_prime_utr;Parent=MsG0180002006.01.T01

Gene Sequence

>MsG0180002006.01.T01

ATGATTGATGAAGACAAGTGGGATCCTAAGCCGCAAAGGTTAGTGAAATGTTGGGCTGATTTGCCAGGTTATAAGGAGTTTGTGCTGAAAAATCATAGTCTTTTCCAGTTCATGGGTGGAAATGTTGTGTTAAAAGAAAAATTTAAACTGCTGAAGGAGGTTCAAGGTTTAGTGGATGTGGAGGTGGATGAGCTTCATTTTTTATCAGCTGATGTAGTGGCTTTATCAAAATTACGTACTAGTATTCAGTGGTCGAATGCAATTATTTCTATTTATGTTAACGGTAGTCAAGTAAAGGGAGTGGATGTCGTGAGAAGCGCTAGTTTCCAACATTTTCATAATCAATTCAAATTGGTGGCGGATGCAATATCCGACCTAGGGGATTTGGAGTTTAAGTCTATTAGTGAGGAGGATAAGTTTGATCTTACTAAGCCTCTTTTGTTACAAGAGATAAAAGAGTCTGTTTGGGACTGTGATAGTTTCAAAAGTCCTGGGCCGGATGGATTAACCTGGGGTGCTTGCTATAGATTGAGAAAAGCTGTTGATAATGTAGTGTCGGAGTCTCACTCTGCTTTTGTTAAAGGAAGACAAATTCCGGATGGTATTCTTATTGCCAATGAATCAGTGGAGGATGCTCGGAGGCTAAAGAAAGAATTAATTCTTTTTAAAGTTGATTTTGAGAAAGCATATGATTCAGTTGATTTGAGGTATTTGGAAGATGTCATGGTTAAAATGAATTTTCACCCGCTTTGGCGGGCTAAAAGTTGGGAAAATATTAGATCCTTGAAGGCACTGTTACTTTTGTTTGAAGAGATTTCTGGCCTAAAAATTAATTTTCACAAACGCATGATGTTTGGAGTAAATGTGGAGATTCCGACAAAGGATAATTTGGTTAGGCGACATATTTTGGTGGCTACTAATATTCTTTGTTCTAATGATTGTGGCTGTTTGGAAGACATTGACCACTTATTTCTTCAATGTGATTTCTTCGGACGTCTTTGGAGTCTTATTTACGGCTGGTTAGGATTTGGAACAGTTCATCACATATTGTACATCATATGGAAGGAGATGAATGCGAGAAATTTCAATCATAAGGATGATCTCCTCCCTTCCATAGTTGAAAAGGTTAAAGTTCAAACGTATTGGTGGTTAAAAGCACATTATGTTTTGTTTGATTGTGATTACCTCAGTTGGAGGTCGCATCCTTTGTCGTGTTTAAAGGTATTGATTATTAAGATGTATAGGAACATCAAGGAGGGGAGAGTTTTGGAAAAAGGGTATTATGTTATTTTATTGCTATTGACTTTATTCCTTTTTAGCACAGAGGGGTTGAATTTAGAGGGACAAATCCTCTTGGATATTAAGAATGGACTTCATGATAAAGATAATTATTTGTCAAATTGGAATTCTAGTGATGAAAATCCATGTGGATGGATAGGTGTAAATTGCACTCATGAATATAAAAGTGGAAATGGTAGTGATCCAGTGGTTGTTTCGCTTAATTTGAGTTCGATGAATCTTTCTGGAACCCTAAATGCTAGTATTGGAGGTCTAACCAATTTAACTTATCTCAATCTTGCTTTCAATGGTTTGAATGGAAGTATCCCTAAGGAGATTGGTGAGTGTTCGAGTTTGGAATATCTTTACTTGAACAATAATCAATTTGAAGGACCGATTCCTGTTGAATTAGGGAAACTGTCTGCTTTGAGATATTTGAATATTTGCAACAATATACTCTCTGGCGTTCTTCCGGACGAGATTGGAAAGTTGACTTCATTGGTTGAGTTGGTTGCTTTTAGCAACTATCTCGTTGGCCCTTTGCCGAGTTCCCTTGGAAATCTTGAGAATCTTGTTACTTTCAGAGCCGGGGCGAATAACATTACTGGTAGCTTGCCGAAGGAGATTAGCCGATGTAAGAGCTTAGAACGTCTTGGTCTTGCTCAAAATCAGATAGTAGGTGAGATACCGAGCGAGATTGGGATGCTTGAAAACTTAAAAGAGTTGATTTTATGGGAAAATGAGTTCTCAGGAGTTGTTCCTAAAGAGCTTGGGAATTGTAGCAGGCTTGAGATCCTGGCGTTATATGGGAATAATCTCATTGGACCGTTACCTGGAGAGATCGGGAACCTGAAATCGTTGAAGTGGTTGTATCTTTATAGAAATAATTTGAATGGATCCATTCCAAGGGAAGTTGGAAATCTTTCTTCAGCTTTACACATTGATTTCTCGGAGAACTCTTTAGGTGGCAATATCCCTTCGGAGTTTGGCAAAATTCGTGGTCTAAGCTTGCTCTTTCTCTTTGAGAACCATCTAAGTGGTGTTATACCGAATGAGTTTGGTAGTTTGAAGAACCTGACGAAGCTGGACCTGTCAATAAATAATCTTACTGGTCCTATTCCGCACCGCTTGCAATATTTGACTAATATGATTCAGTTGCAACTTTTCGACAACTCATTAACTGGTATTATTCCTCAGGGACTTGGACTTTTTAGTCGTCTTTGGGTAGTTGATTTTTCTGACAACAACTTGACCGGAACAATACCTCCTCATTTATGCCGAAACTCTCATTTGATGCTGTTGAATGTAGCAGATAATCAGCTTTACGGAAACATACCAAAAGGGATATTGAACTGTGAATCACTGGCACAGTTGCTGTTGGTCGGTAACAGGCTTACCGGTGGCTTCCCTTCCGAGTTGTGTAAACTTGAGAACCTTACTGCCATTGATTTGAATGATAACAGGTTTAGCGGTCCACTTCCTCGTGAGATCAGAAACTGCCGCAATTTGCAAAGGCTTCATATTGCAAACAATTACTTCACATTGGAGTTGCCTAAGGAAATAGGAAATCTATCTCAATTGGTAACTTTTAATGTTTCATCAAACCTTTTCGCTGGAAGAATCCCCACTGAAATTGTTTGGTGCCAGAGGCTGCAGCGCCTAGATCTCAGCCGGAATCGTTTTACCGGTTCTTTGCCAAATGAACTCGGAACACTTCAGCACTTGGAGATTCTAAAACTCTCAGACAATCAGTTGTCCGGAAATATTCCTGCAGCCTTAGGCAATCTGTCTCATTTGAACTGGTTGCTGATGGACGGCAATTTGTTTTTCGGCGAAATACCTTCTCAGTTAGGATCTCTTTCGAGCTTACAGATAGCAATGGATCTCAGTTACAATAATCTTTCTGGAAGAATACCGTCTCGGCTTGGCAATCTCAATATGCTTGAGTATCTCTTTCTCAATAACAACCAATTGGATGGTGAAATTCCGAGTACCTTTAGCGCACTTTCTAGCTTGATGGGGTGTAATTTCTCAAACAATAACCTCTCTGGACCAATTCCTTCCACTAAAATTTTTGAAAGTATGGCTGTTAGCAGCTTTGTTGGAGGTAACATAGGTCTTTGCGGTACACCTCTCGGTGACTGCAATAGAATTTCAGCTCCTCGCTCTACCCATCCGGTGAAAGATGCTAATCTTCCCCGTGCTAAAATTGTCATAATCATCGCAGCTTCTGTTGGTGGTGTTTCTCTCATTTTGATTTTAGTGATTCTATATTTAATGAGACCACCTCGTGAGGCTGTTGATTCCTTTGCAGAAACTGAAACTCCATCCATAGATTCAGATATCTATTTGCCTCCAAACGAAGGTTTCACATTTCAAGACCTAGTTGAAGCTACAAAAAGATTTCATGAAAGTTATGTTATAGGTAGTGGAGCGTGCGGCACAGTTTATAAGGCAGTGATGAAATCTGGTAAGACGATTGCTGTTAAGAAGTTAGCCTCGAACCGGGAAGGGAACAATGTCGATAACAGTTTCAGGGCTGAAATATCGACTCTAGGAAGGATAAGGCATCGGAATATAGTGAAGCTGTACGGCTTTTGCTATCACCAAGGTTCAAATCTCCTACTTTATGAGTACATGGAAAGAGGTAGCTTAGGTGAATTATTGCATGGTTCTGCAAGTAATTTGGAGTGGCCGACTCGATTCATGATTGCTCTTGGAGCTGCTGAAGGTCTTTCTTACTTGCATCATGACTGTAAACCAAAGATCATTCACCGAGACATAAAATCTAACAACATTCTTCTTGATGAAAATTTCGAGGCCCATGTTGGTGATTTTGGATTGGCTAAAGTGATTGACATGCCTCAGTCAAAATCGATGTCCGCAGTTGCTGGATCTTATGGGTATATTGCTCCTGAATATGCATATACCATGAAGGTTACAGAGAAGTGCGACATATACAGTTACGGCGTTGTACTCTTGGAATTGCTAACCGGAAAATCTCCGGTTCAACCAATGGAGCAAGGAGGTGATCTTGTCACATGGACGAGAAACCATATTCGGAACAATAACAATACACTGAGCTCTGAGATACTTGACACTCGTCTTGATCTTGAAGATCAAATCACTATAAATCACATGCTGACTGTTTTGAAACTTGCTCTAATGTGCACAAGTATGTCTCCTACTAAGAGGCCATCAATGCGCGATGTTGTGTTGATGCTCATTGAGTCCAATGAACGAGAAGGAAACTTAACACTCACTCGAACAAACCACGATGATCCTCATTCTAAAGATAGCACATGA

Protein sequence

>MsG0180002006.01.T01

MIDEDKWDPKPQRLVKCWADLPGYKEFVLKNHSLFQFMGGNVVLKEKFKLLKEVQGLVDVEVDELHFLSADVVALSKLRTSIQWSNAIISIYVNGSQVKGVDVVRSASFQHFHNQFKLVADAISDLGDLEFKSISEEDKFDLTKPLLLQEIKESVWDCDSFKSPGPDGLTWGACYRLRKAVDNVVSESHSAFVKGRQIPDGILIANESVEDARRLKKELILFKVDFEKAYDSVDLRYLEDVMVKMNFHPLWRAKSWENIRSLKALLLLFEEISGLKINFHKRMMFGVNVEIPTKDNLVRRHILVATNILCSNDCGCLEDIDHLFLQCDFFGRLWSLIYGWLGFGTVHHILYIIWKEMNARNFNHKDDLLPSIVEKVKVQTYWWLKAHYVLFDCDYLSWRSHPLSCLKVLIIKMYRNIKEGRVLEKGYYVILLLLTLFLFSTEGLNLEGQILLDIKNGLHDKDNYLSNWNSSDENPCGWIGVNCTHEYKSGNGSDPVVVSLNLSSMNLSGTLNASIGGLTNLTYLNLAFNGLNGSIPKEIGECSSLEYLYLNNNQFEGPIPVELGKLSALRYLNICNNILSGVLPDEIGKLTSLVELVAFSNYLVGPLPSSLGNLENLVTFRAGANNITGSLPKEISRCKSLERLGLAQNQIVGEIPSEIGMLENLKELILWENEFSGVVPKELGNCSRLEILALYGNNLIGPLPGEIGNLKSLKWLYLYRNNLNGSIPREVGNLSSALHIDFSENSLGGNIPSEFGKIRGLSLLFLFENHLSGVIPNEFGSLKNLTKLDLSINNLTGPIPHRLQYLTNMIQLQLFDNSLTGIIPQGLGLFSRLWVVDFSDNNLTGTIPPHLCRNSHLMLLNVADNQLYGNIPKGILNCESLAQLLLVGNRLTGGFPSELCKLENLTAIDLNDNRFSGPLPREIRNCRNLQRLHIANNYFTLELPKEIGNLSQLVTFNVSSNLFAGRIPTEIVWCQRLQRLDLSRNRFTGSLPNELGTLQHLEILKLSDNQLSGNIPAALGNLSHLNWLLMDGNLFFGEIPSQLGSLSSLQIAMDLSYNNLSGRIPSRLGNLNMLEYLFLNNNQLDGEIPSTFSALSSLMGCNFSNNNLSGPIPSTKIFESMAVSSFVGGNIGLCGTPLGDCNRISAPRSTHPVKDANLPRAKIVIIIAASVGGVSLILILVILYLMRPPREAVDSFAETETPSIDSDIYLPPNEGFTFQDLVEATKRFHESYVIGSGACGTVYKAVMKSGKTIAVKKLASNREGNNVDNSFRAEISTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSASNLEWPTRFMIALGAAEGLSYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGKSPVQPMEQGGDLVTWTRNHIRNNNNTLSSEILDTRLDLEDQITINHMLTVLKLALMCTSMSPTKRPSMRDVVLMLIESNEREGNLTLTRTNHDDPHSKDST*