AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080049038.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049038.01.T01 MTR_1g099520 96.503 286 7 1 1 286 1 283 0.0 555
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080049038.01.T01 AT1G28140 71.774 248 63 2 43 283 31 278 1.41e-117 339

Find 33 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGTTTATAACGGCGTTTA+TGG 0.193049 contig624end:-12916 MsG0080049038.01.T01:exon
GACAGCGAAAATCAGAAATA+TGG 0.353072 contig624end:-13109 MsG0080049038.01.T01:exon
CGCCGTTATAAACTTGTTGT+TGG 0.370560 contig624end:+12923 None:intergenic
CAAGTTTATGTCTTGGCGGT+CGG 0.386160 contig624end:-13002 MsG0080049038.01.T01:exon
AAGTTTATGTCTTGGCGGTC+GGG 0.403259 contig624end:-13001 MsG0080049038.01.T01:exon
CCGGTCCGGGTTTAAAACTA+TGG 0.405975 contig624end:-13155 None:intergenic
ACCGACCCAATTCTGATTCT+CGG 0.410553 contig624end:+12970 None:intergenic
ATCTTCGGCTTCAACGGTCC+AGG 0.413922 contig624end:+12891 None:intergenic
CCTTCTTCAAGTTTATGTCT+TGG 0.419897 contig624end:-13009 MsG0080049038.01.T01:exon
CCTTCTCCGAGAATCAGAAT+TGG 0.420118 contig624end:-12976 MsG0080049038.01.T01:exon
GAGTACCTCTTTGACATCTT+CGG 0.430335 contig624end:+12876 None:intergenic
AATTCGAACAAGATTAGAAA+TGG 0.436512 contig624end:+13032 None:intergenic
ATAACGGCGTTTATGGCCCC+TGG 0.459012 contig624end:-12909 MsG0080049038.01.T01:exon
TTTGACATCTTCGGCTTCAA+CGG 0.489022 contig624end:+12885 None:intergenic
TCTTCAAGTTTATGTCTTGG+CGG 0.493287 contig624end:-13006 MsG0080049038.01.T01:exon
CTTCTCCGAGAATCAGAATT+GGG 0.500907 contig624end:-12975 MsG0080049038.01.T01:exon
TCTTCGGCTTCAACGGTCCA+GGG 0.516093 contig624end:+12892 None:intergenic
ATCAGAAATATGGCGTTACA+AGG 0.523943 contig624end:-13099 MsG0080049038.01.T01:exon
AACCAACAACAAGTTTATAA+CGG 0.529478 contig624end:-12925 MsG0080049038.01.T01:exon
TGGCGGTTTCAATATCTGTA+AGG 0.539090 contig624end:-13059 MsG0080049038.01.T01:exon
TCGGTACGGTGTAAAGCGGC+GGG 0.552551 contig624end:-12952 MsG0080049038.01.T01:exon
CAATTCTGATTCTCGGAGAA+GGG 0.554524 contig624end:+12977 None:intergenic
CCAAGACATAAACTTGAAGA+AGG 0.556172 contig624end:+13009 None:intergenic
CCAATTCTGATTCTCGGAGA+AGG 0.562090 contig624end:+12976 None:intergenic
GTCGGTACGGTGTAAAGCGG+CGG 0.563056 contig624end:-12953 MsG0080049038.01.T01:exon
CGAACAAGATTAGAAATGGA+AGG 0.595756 contig624end:+13036 None:intergenic
GAATCAGAATTGGGTCGGTA+CGG 0.606759 contig624end:-12966 MsG0080049038.01.T01:exon
AGGATTAAGTACTGTTTCTG+TGG 0.608660 contig624end:-13079 MsG0080049038.01.T01:exon
TCCGAGAATCAGAATTGGGT+CGG 0.617946 contig624end:-12971 MsG0080049038.01.T01:exon
ATTAAGTACTGTTTCTGTGG+CGG 0.624479 contig624end:-13076 MsG0080049038.01.T01:exon
CTTCGGCTTCAACGGTCCAG+GGG 0.636756 contig624end:+12893 None:intergenic
TGAAGCCGAAGATGTCAAAG+AGG 0.661714 contig624end:-12881 MsG0080049038.01.T01:intron
TGGGTCGGTACGGTGTAAAG+CGG 0.668122 contig624end:-12956 MsG0080049038.01.T01:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTATTGAATTAATATTAAA+TGG + contig624end:11337-11356 None:intergenic 10.0%
!!! TTTTTTTTTTCAATTAGTTA+AGG - contig624end:11570-11589 MsG0080049038.01.T01:intron 10.0%
!! AAAAATAAAATATGACCAAT+GGG + contig624end:10640-10659 None:intergenic 15.0%
!! AATATATCTGATTCAAAATT+TGG - contig624end:10686-10705 MsG0080049038.01.T01:exon 15.0%
!! AATATTAATTCAATAGAGAA+GGG - contig624end:11340-11359 MsG0080049038.01.T01:intron 15.0%
!! AATTAATTATTGACAACTTT+AGG - contig624end:10559-10578 MsG0080049038.01.T01:exon 15.0%
!! AGAAAAAGATATTATACAAA+TGG + contig624end:12008-12027 None:intergenic 15.0%
!! ATGGTAAAAATAAAAATAGA+TGG + contig624end:11318-11337 None:intergenic 15.0%
!! TAAAAATAAAATATGACCAA+TGG + contig624end:10641-10660 None:intergenic 15.0%
!! TAATATTAATTCAATAGAGA+AGG - contig624end:11339-11358 MsG0080049038.01.T01:intron 15.0%
!!! ATTTTTTTCGAAAAAAATGA+TGG - contig624end:12388-12407 MsG0080049038.01.T01:intron 15.0%
!!! TTTTATTTTTAAGAGACATT+TGG - contig624end:10650-10669 MsG0080049038.01.T01:exon 15.0%
!! AATTATCAAAATCATGAGAA+TGG - contig624end:11624-11643 MsG0080049038.01.T01:intron 20.0%
!! ACTTAATGTCTCTTAAAAAT+AGG - contig624end:10731-10750 MsG0080049038.01.T01:exon 20.0%
!! ATTATAAAAGAAAAGTTGTC+AGG - contig624end:12577-12596 MsG0080049038.01.T01:intron 20.0%
!! CATCAAAAGAAATATGATAA+CGG + contig624end:11849-11868 None:intergenic 20.0%
!!! AAATTGTTATTACTCCATAA+GGG + contig624end:10490-10509 None:intergenic 20.0%
!!! ATTGATTTTTTTTACGTCAT+TGG - contig624end:11045-11064 MsG0080049038.01.T01:CDS 20.0%
!!! TGTATTAAAGTTTTATTAGC+CGG + contig624end:11198-11217 None:intergenic 20.0%
!!! TTGATTTTTTTTACGTCATT+GGG - contig624end:11046-11065 MsG0080049038.01.T01:CDS 20.0%
! AACCAACAACAAGTTTATAA+CGG - contig624end:10225-10244 MsG0080049038.01.T01:exon 25.0%
! AACTGAATTTAGAAAACAGA+AGG + contig624end:10392-10411 None:intergenic 25.0%
! AATTCGAACAAGATTAGAAA+TGG + contig624end:10121-10140 None:intergenic 25.0%
! ACAATAATTTAAGAGTCAAG+AGG + contig624end:11907-11926 None:intergenic 25.0%
! ACAATCTTTACAGGTATAAA+AGG + contig624end:12483-12502 None:intergenic 25.0%
! ATCTACTCAATAAGAACATT+TGG - contig624end:13144-13163 MsG0080049038.01.T01:exon 25.0%
! ATGGCTACCTTAAATTAAAT+AGG + contig624end:11527-11546 None:intergenic 25.0%
! ATGTCTCTTAAAAATAGGAT+CGG - contig624end:10736-10755 MsG0080049038.01.T01:exon 25.0%
! ATTATTCCTATTCTTCTTCT+CGG - contig624end:11450-11469 MsG0080049038.01.T01:intron 25.0%
! CATAAGTAATTTACCTTGAT+GGG + contig624end:12140-12159 None:intergenic 25.0%
! CTATTATTTATTTGAGTCCA+TGG - contig624end:11869-11888 MsG0080049038.01.T01:intron 25.0%
! CTTATAACAGAAATTGATTG+AGG + contig624end:10307-10326 None:intergenic 25.0%
! TAAACACAAATCCAATATCA+GGG + contig624end:12208-12227 None:intergenic 25.0%
! TATTATACAAATGGACCAAT+CGG + contig624end:11999-12018 None:intergenic 25.0%
! TCATAAGTAATTTACCTTGA+TGG + contig624end:12141-12160 None:intergenic 25.0%
! TCCTTAAAAAACCGTTTAAA+AGG - contig624end:12825-12844 MsG0080049038.01.T01:intron 25.0%
! TGGATTTGTGTTTAATATCA+AGG - contig624end:12214-12233 MsG0080049038.01.T01:intron 25.0%
! TTAAACACAAATCCAATATC+AGG + contig624end:12209-12228 None:intergenic 25.0%
! TTTAATATCAAGGATGACAT+CGG - contig624end:12224-12243 MsG0080049038.01.T01:intron 25.0%
!! CAAATTGTTATTACTCCATA+AGG + contig624end:10491-10510 None:intergenic 25.0%
!! CATGTTGCCTATTTAATTTA+AGG - contig624end:11517-11536 MsG0080049038.01.T01:intron 25.0%
!! TTGGAAATGTTATTGTGTTT+TGG - contig624end:12753-12772 MsG0080049038.01.T01:intron 25.0%
!! TTTTCAATTAGTTAAGGAGT+TGG - contig624end:11576-11595 MsG0080049038.01.T01:intron 25.0%
!!! AATAAGAACATTTGGTTTGA+CGG - contig624end:13152-13171 MsG0080049038.01.T01:exon 25.0%
!!! ATTTTTCTGGAAAAGTCTTT+TGG + contig624end:12990-13009 None:intergenic 25.0%
!!! TTTTTTCGATGAAGATCTAA+TGG - contig624end:11649-11668 MsG0080049038.01.T01:intron 25.0%
AAAAAATTCCTACGAGTTCA+AGG + contig624end:12375-12394 None:intergenic 30.0%
AACAAGAACCATATATGCTA+TGG + contig624end:11546-11565 None:intergenic 30.0%
AACCTGTACTACATTGTTAT+TGG + contig624end:12518-12537 None:intergenic 30.0%
AACTTACTTTGCTTGCTTTA+TGG - contig624end:12072-12091 MsG0080049038.01.T01:CDS 30.0%
AATAACAATGTAGTACAGGT+TGG - contig624end:12517-12536 MsG0080049038.01.T01:intron 30.0%
ACATAGCATACAATCTTTAC+AGG + contig624end:12492-12511 None:intergenic 30.0%
ATACTAACTAACACGTGATA+AGG + contig624end:10337-10356 None:intergenic 30.0%
ATAGTTAGCATTGCATACAT+AGG + contig624end:10909-10928 None:intergenic 30.0%
CATCTTGTATTCTTGAAACA+GGG - contig624end:11388-11407 MsG0080049038.01.T01:intron 30.0%
GGGAAAAGGAATTACAATAA+TGG + contig624end:10470-10489 None:intergenic 30.0%
TAATGATGAAGGAATGATGA+AGG + contig624end:12944-12963 None:intergenic 30.0%
TAGTTAGCATTGCATACATA+GGG + contig624end:10908-10927 None:intergenic 30.0%
TCATCTTGTATTCTTGAAAC+AGG - contig624end:11387-11406 MsG0080049038.01.T01:intron 30.0%
TCTTAAAAATAGGATCGGAT+CGG - contig624end:10741-10760 MsG0080049038.01.T01:exon 30.0%
TTATTACTCCATAAGGGAAA+AGG + contig624end:10484-10503 None:intergenic 30.0%
! ACCTGTACTACATTGTTATT+GGG + contig624end:12517-12536 None:intergenic 30.0%
! ACGTGTTAGTTAGTATTGAA+AGG - contig624end:10341-10360 MsG0080049038.01.T01:exon 30.0%
! CTGTTGGATTTAAGATTCAA+AGG + contig624end:12855-12874 None:intergenic 30.0%
! GCCTTTTAAACGGTTTTTTA+AGG + contig624end:12829-12848 None:intergenic 30.0%
! TAAGTTCCATCCAGTTTTTA+TGG - contig624end:12663-12682 MsG0080049038.01.T01:intron 30.0%
! TCAAAGGAAAGCCTTTTAAA+CGG + contig624end:12839-12858 None:intergenic 30.0%
! TGTTTAATAGAGCACTTTAG+AGG + contig624end:11499-11518 None:intergenic 30.0%
! TTGTAATTCCTTTTCCCTTA+TGG - contig624end:10473-10492 MsG0080049038.01.T01:exon 30.0%
!! ATGATAACGGTTATCAATTC+AGG + contig624end:11836-11855 None:intergenic 30.0%
!! TGATAACGGTTATCAATTCA+GGG + contig624end:11835-11854 None:intergenic 30.0%
!! TTACTCTAAAATTTGCAGTC+CGG - contig624end:12029-12048 MsG0080049038.01.T01:CDS 30.0%
!!! GTTTTGGAAATTGAGTTACA+AGG - contig624end:12769-12788 MsG0080049038.01.T01:intron 30.0%
!!! TAAAGTTTTATTAGCCGGTT+GGG + contig624end:11193-11212 None:intergenic 30.0%
!!! TTAAAGTTTTATTAGCCGGT+TGG + contig624end:11194-11213 None:intergenic 30.0%
AAAATATGACCAATGGGAGT+AGG + contig624end:10634-10653 None:intergenic 35.0%
AATATCAGGGAATTTATGCG+GGG + contig624end:12195-12214 None:intergenic 35.0%
ACAGAAATTGATTGAGGAGA+AGG + contig624end:10301-10320 None:intergenic 35.0%
ACCCAATAACAATGTAGTAC+AGG - contig624end:12513-12532 MsG0080049038.01.T01:intron 35.0%
ACTTTGCTTGCTTTATGGAT+GGG - contig624end:12077-12096 MsG0080049038.01.T01:CDS 35.0%
ATCAGAAATATGGCGTTACA+AGG - contig624end:10051-10070 MsG0080049038.01.T01:exon 35.0%
CAAGTTTATAACGGCGTTTA+TGG - contig624end:10234-10253 MsG0080049038.01.T01:exon 35.0%
CAATATCAGGGAATTTATGC+GGG + contig624end:12196-12215 None:intergenic 35.0%
CATATATACTTACAGTGAGC+AGG + contig624end:12631-12650 None:intergenic 35.0%
CCAAGACATAAACTTGAAGA+AGG + contig624end:10144-10163 None:intergenic 35.0%
CCAATATCAGGGAATTTATG+CGG + contig624end:12197-12216 None:intergenic 35.0%
CGAACAAGATTAGAAATGGA+AGG + contig624end:10117-10136 None:intergenic 35.0%
GACAGCGAAAATCAGAAATA+TGG - contig624end:10041-10060 MsG0080049038.01.T01:exon 35.0%
GAGAGATTTGAACGTGAAAA+CGG + contig624end:12258-12277 None:intergenic 35.0%
TAAGGTAGCCATAGCATATA+TGG - contig624end:11535-11554 MsG0080049038.01.T01:intron 35.0%
TACTTTGCTTGCTTTATGGA+TGG - contig624end:12076-12095 MsG0080049038.01.T01:CDS 35.0%
TGAATCTTAAATCCAACAGC+TGG - contig624end:12856-12875 MsG0080049038.01.T01:intron 35.0%
TGGTTAATGACTACTGTCTT+TGG - contig624end:12734-12753 MsG0080049038.01.T01:intron 35.0%
TTATTGTCACCAATACCGAT+TGG - contig624end:11981-12000 MsG0080049038.01.T01:CDS 35.0%
TTGTTCCAGTTTCTCAATCA+AGG + contig624end:12300-12319 None:intergenic 35.0%
! AAAAGTCTTTTGGTCATTGG+AGG + contig624end:12980-12999 None:intergenic 35.0%
! AGATTTTTCTGTCATGTGCT+TGG - contig624end:13043-13062 MsG0080049038.01.T01:exon 35.0%
! AGTTGCAGCTTAAAAGCTTT+TGG - contig624end:10878-10897 MsG0080049038.01.T01:CDS 35.0%
! CCTTCTTCAAGTTTATGTCT+TGG - contig624end:10141-10160 MsG0080049038.01.T01:exon 35.0%
! CTGAAGAAGTTGGATTTTTC+TGG + contig624end:13003-13022 None:intergenic 35.0%
! CTTTTAAGCTGCAACTGTAT+AGG + contig624end:10874-10893 None:intergenic 35.0%
! GGTCTTTTTGTGATATTTGC+CGG - contig624end:12098-12117 MsG0080049038.01.T01:CDS 35.0%
! TCTTCAAGTTTATGTCTTGG+CGG - contig624end:10144-10163 MsG0080049038.01.T01:exon 35.0%
! TGGAAAAGTCTTTTGGTCAT+TGG + contig624end:12983-13002 None:intergenic 35.0%
! TTTGTTGTATGTGACTGCAT+TGG - contig624end:12714-12733 MsG0080049038.01.T01:intron 35.0%
! TTTTTGTGATATTTGCCGGA+AGG - contig624end:12102-12121 MsG0080049038.01.T01:CDS 35.0%
!! AGGATTAAGTACTGTTTCTG+TGG - contig624end:10071-10090 MsG0080049038.01.T01:exon 35.0%
!! ATTAAGTACTGTTTCTGTGG+CGG - contig624end:10074-10093 MsG0080049038.01.T01:exon 35.0%
!! GTCACAAAAGTTGATGTATC+TGG + contig624end:10713-10732 None:intergenic 35.0%
!! TAGTTCTAGCTAGTCTAAGA+CGG - contig624end:12897-12916 MsG0080049038.01.T01:exon 35.0%
!! TTTGACAGGACTTGTTTTCA+AGG - contig624end:11272-11291 MsG0080049038.01.T01:intron 35.0%
!!! TTTTTTTACGTCATTGGGTC+AGG - contig624end:11051-11070 MsG0080049038.01.T01:CDS 35.0%
AACATATCCAACCACCTAGT+GGG - contig624end:11732-11751 MsG0080049038.01.T01:CDS 40.0%
AATCTCCAGAGAATGCAACA+AGG + contig624end:13028-13047 None:intergenic 40.0%
ACAAATGGACCAATCGGTAT+TGG + contig624end:11993-12012 None:intergenic 40.0%
ACGCTTCCATAAAAACTGGA+TGG + contig624end:12672-12691 None:intergenic 40.0%
AGATGTCCGAGAAGAAGAAT+AGG + contig624end:11459-11478 None:intergenic 40.0%
AGGAATGATGAAGGAAACCT+TGG + contig624end:12935-12954 None:intergenic 40.0%
ATCAGTGCAATCATGATAGG+AGG + contig624end:11805-11824 None:intergenic 40.0%
ATCCACACTCACTTCTTGAT+CGG + contig624end:11959-11978 None:intergenic 40.0%
CAACAAGGAACTGAAGAAGT+TGG + contig624end:13013-13032 None:intergenic 40.0%
CAACACGCTTCCATAAAAAC+TGG + contig624end:12676-12695 None:intergenic 40.0%
CAATTCTGATTCTCGGAGAA+GGG + contig624end:10176-10195 None:intergenic 40.0%
CCGCATAAATTCCCTGATAT+TGG - contig624end:12194-12213 MsG0080049038.01.T01:CDS 40.0%
CTCTCTTATATGAGAACTGC+AGG + contig624end:12437-12456 None:intergenic 40.0%
CTTCTCCGAGAATCAGAATT+GGG - contig624end:10175-10194 MsG0080049038.01.T01:exon 40.0%
GAAAGCCTTGATTGAGAAAC+TGG - contig624end:12292-12311 MsG0080049038.01.T01:intron 40.0%
GAGATCAGTGCAATCATGAT+AGG + contig624end:11808-11827 None:intergenic 40.0%
GAGTACCTCTTTGACATCTT+CGG + contig624end:10277-10296 None:intergenic 40.0%
GCAGTTCTCATATAAGAGAG+AGG - contig624end:12437-12456 MsG0080049038.01.T01:intron 40.0%
GCTAAGATGGGTAATGATGA+AGG + contig624end:12955-12974 None:intergenic 40.0%
GGAATGATGAAGGAAACCTT+GGG + contig624end:12934-12953 None:intergenic 40.0%
TATTCTTCTTCTCGGACATC+TGG - contig624end:11458-11477 MsG0080049038.01.T01:intron 40.0%
TCAACTATACCTACTCCCAT+TGG - contig624end:10622-10641 MsG0080049038.01.T01:exon 40.0%
TCTTATATGAGAACTGCAGG+CGG + contig624end:12434-12453 None:intergenic 40.0%
TGCAGGGCTAGAAAGAATTT+GGG + contig624end:11713-11732 None:intergenic 40.0%
TGGCGGTTTCAATATCTGTA+AGG - contig624end:10091-10110 MsG0080049038.01.T01:exon 40.0%
TTGCAGGGCTAGAAAGAATT+TGG + contig624end:11714-11733 None:intergenic 40.0%
TTTAAGAGTCAAGAGGACGA+TGG + contig624end:11900-11919 None:intergenic 40.0%
TTTGACATCTTCGGCTTCAA+CGG + contig624end:10268-10287 None:intergenic 40.0%
TTTGCTTGAGCGTATCACTT+AGG + contig624end:11023-11042 None:intergenic 40.0%
! AAATTTGCAGTCCGGTTTGA+TGG - contig624end:12037-12056 MsG0080049038.01.T01:CDS 40.0%
! AGGCTTTCTTTTCGTCATCA+CGG + contig624end:12280-12299 None:intergenic 40.0%
! AGTTCTAGCTAGTCTAAGAC+GGG - contig624end:12898-12917 MsG0080049038.01.T01:exon 40.0%
! ATTTCTGATTTTCGCTGTCG+AGG + contig624end:10040-10059 None:intergenic 40.0%
! GCTAGAAAGAATTTGGGTTC+TGG + contig624end:11707-11726 None:intergenic 40.0%
! TATATCGTACCGATCAGGAT+TGG - contig624end:10942-10961 MsG0080049038.01.T01:intron 40.0%
! TTTTTCTGTCATGTGCTTGG+TGG - contig624end:13046-13065 MsG0080049038.01.T01:exon 40.0%
!! ACAGGACTTGTTTTCAAGGA+AGG - contig624end:11276-11295 MsG0080049038.01.T01:intron 40.0%
!! CAGTTTTTATGGAAGCGTGT+TGG - contig624end:12674-12693 MsG0080049038.01.T01:intron 40.0%
!! CGCCGTTATAAACTTGTTGT+TGG + contig624end:10230-10249 None:intergenic 40.0%
!! TAAGTTTGCTGTCTGCATGT+GGG - contig624end:13069-13088 MsG0080049038.01.T01:exon 40.0%
!! TGAGTTACAAGGTTTGCTGA+AGG - contig624end:12780-12799 MsG0080049038.01.T01:intron 40.0%
AAGTTTATGTCTTGGCGGTC+GGG - contig624end:10149-10168 MsG0080049038.01.T01:exon 45.0%
ACACACTACACTGTGTTTGC+AGG + contig624end:10825-10844 None:intergenic 45.0%
ACATATCCAACCACCTAGTG+GGG - contig624end:11733-11752 MsG0080049038.01.T01:CDS 45.0%
ACCGACCCAATTCTGATTCT+CGG + contig624end:10183-10202 None:intergenic 45.0%
ACTCACTTCTTGATCGGTGA+AGG + contig624end:11953-11972 None:intergenic 45.0%
ACTTAGGTCATCGGGCAAAT+AGG + contig624end:11007-11026 None:intergenic 45.0%
AGAGGACGATGGAAAATCCA+TGG + contig624end:11889-11908 None:intergenic 45.0%
AGCCTGACTCTACTCGAATT+GGG + contig624end:10520-10539 None:intergenic 45.0%
AGCGTATCACTTAGGTCATC+GGG + contig624end:11015-11034 None:intergenic 45.0%
AGGTGGTTGGATATGTTGCA+GGG + contig624end:11729-11748 None:intergenic 45.0%
CAACATATCCAACCACCTAG+TGG - contig624end:11731-11750 MsG0080049038.01.T01:CDS 45.0%
CAAGTTTATGTCTTGGCGGT+CGG - contig624end:10148-10167 MsG0080049038.01.T01:exon 45.0%
CACACTACACTGTGTTTGCA+GGG + contig624end:10824-10843 None:intergenic 45.0%
CAGCTGTTACCAATCCTGAT+CGG + contig624end:10954-10973 None:intergenic 45.0%
CAGTTCCTTGTTGCATTCTC+TGG - contig624end:13020-13039 MsG0080049038.01.T01:exon 45.0%
CCAATTCTGATTCTCGGAGA+AGG + contig624end:10177-10196 None:intergenic 45.0%
CCTGTCAAAGCAGCAAAAAG+AGG + contig624end:11261-11280 None:intergenic 45.0%
CCTTCTCCGAGAATCAGAAT+TGG - contig624end:10174-10193 MsG0080049038.01.T01:exon 45.0%
CGGTGAAGGTAAACGAAATG+CGG + contig624end:11939-11958 None:intergenic 45.0%
GAAATTCACTCAGCCCATCA+AGG - contig624end:12124-12143 MsG0080049038.01.T01:CDS 45.0%
GAATCAGAATTGGGTCGGTA+CGG - contig624end:10184-10203 MsG0080049038.01.T01:exon 45.0%
GACAAGAGCAAGACTTGAGT+AGG - contig624end:13100-13119 MsG0080049038.01.T01:exon 45.0%
GAGCGTATCACTTAGGTCAT+CGG + contig624end:11016-11035 None:intergenic 45.0%
GGAGGCTGTTACTAGCAATA+AGG + contig624end:11787-11806 None:intergenic 45.0%
GGTACGATATAACCTGCCAT+GGG + contig624end:10933-10952 None:intergenic 45.0%
TAGCCTGACTCTACTCGAAT+TGG + contig624end:10521-10540 None:intergenic 45.0%
TAGGTGGTTGGATATGTTGC+AGG + contig624end:11730-11749 None:intergenic 45.0%
TCATTGGAGGAGGCTAAGAT+GGG + contig624end:12967-12986 None:intergenic 45.0%
TCCGAGAATCAGAATTGGGT+CGG - contig624end:10179-10198 MsG0080049038.01.T01:exon 45.0%
TCTTAAATCCAACAGCTGGC+AGG - contig624end:12860-12879 MsG0080049038.01.T01:intron 45.0%
TGAAGCCGAAGATGTCAAAG+AGG - contig624end:10269-10288 MsG0080049038.01.T01:exon 45.0%
TGCAATGCTAACTATGCCCA+TGG - contig624end:10914-10933 MsG0080049038.01.T01:CDS 45.0%
TTTACGTCATTGGGTCAGGT+GGG - contig624end:11055-11074 MsG0080049038.01.T01:CDS 45.0%
TTTATTAGCCGGTTGGGCAA+GGG + contig624end:11187-11206 None:intergenic 45.0%
! AGTCTTTTGGTCATTGGAGG+AGG + contig624end:12977-12996 None:intergenic 45.0%
! ATCAGGATTGGTAACAGCTG+CGG - contig624end:10954-10973 MsG0080049038.01.T01:intron 45.0%
! CAGGTTATATCGTACCGATC+AGG - contig624end:10937-10956 MsG0080049038.01.T01:intron 45.0%
! TTGATAACCCATCAGCTGTC+TGG - contig624end:11226-11245 MsG0080049038.01.T01:intron 45.0%
! TTTTACGTCATTGGGTCAGG+TGG - contig624end:11054-11073 MsG0080049038.01.T01:CDS 45.0%
! TTTTATTAGCCGGTTGGGCA+AGG + contig624end:11188-11207 None:intergenic 45.0%
!! AAGTTTGCTGTCTGCATGTG+GGG - contig624end:13070-13089 MsG0080049038.01.T01:exon 45.0%
!! GTAAGTTTGCTGTCTGCATG+TGG - contig624end:13068-13087 MsG0080049038.01.T01:exon 45.0%
!!! CCTCTTTTTGCTGCTTTGAC+AGG - contig624end:11258-11277 MsG0080049038.01.T01:intron 45.0%
!!! TTTTATAATTTAATTAAGAT+TGG + contig624end:12566-12585 None:intergenic 5.0%
AAATCCAACAGCTGGCAGGT+TGG - contig624end:12864-12883 MsG0080049038.01.T01:intron 50.0%
AGCGCACTCTGCAAGCATTA+TGG - contig624end:11124-11143 MsG0080049038.01.T01:intron 50.0%
AGTTCCGTCGTCCATCAAAC+CGG + contig624end:12051-12070 None:intergenic 50.0%
ATACCAGCTCCAATACACCC+TGG - contig624end:12340-12359 MsG0080049038.01.T01:intron 50.0%
ATGCTAACTATGCCCATGGC+AGG - contig624end:10918-10937 MsG0080049038.01.T01:intron 50.0%
CACCGATCAAGAAGTGAGTG+TGG - contig624end:11954-11973 MsG0080049038.01.T01:CDS 50.0%
CGCACTCTGCAAGCATTATG+GGG - contig624end:11126-11145 MsG0080049038.01.T01:intron 50.0%
CGGTACGATATAACCTGCCA+TGG + contig624end:10934-10953 None:intergenic 50.0%
CTTGAAACAGGGCTCTGCTA+CGG - contig624end:11399-11418 MsG0080049038.01.T01:intron 50.0%
GACCCAATTCGAGTAGAGTC+AGG - contig624end:10515-10534 MsG0080049038.01.T01:exon 50.0%
GCGCACTCTGCAAGCATTAT+GGG - contig624end:11125-11144 MsG0080049038.01.T01:intron 50.0%
GGGCTGAGTGAATTTCCTTC+CGG + contig624end:12120-12139 None:intergenic 50.0%
GTCATTGGAGGAGGCTAAGA+TGG + contig624end:12968-12987 None:intergenic 50.0%
TACCAGCTCCAATACACCCT+GGG - contig624end:12341-12360 MsG0080049038.01.T01:intron 50.0%
TAGGTCATCGGGCAAATAGG+CGG + contig624end:11004-11023 None:intergenic 50.0%
TTAACCAACCTGCCAGCTGT+TGG + contig624end:12871-12890 None:intergenic 50.0%
!! AGTTTGCTGTCTGCATGTGG+GGG - contig624end:13071-13090 MsG0080049038.01.T01:exon 50.0%
!! GACGGGTTGCAAAATTCCCA+AGG - contig624end:12915-12934 MsG0080049038.01.T01:exon 50.0%
ACCAGCTCCAATACACCCTG+GGG - contig624end:12342-12361 MsG0080049038.01.T01:intron 55.0%
ATAACGGCGTTTATGGCCCC+TGG - contig624end:10241-10260 MsG0080049038.01.T01:exon 55.0%
ATCTTCGGCTTCAACGGTCC+AGG + contig624end:10262-10281 None:intergenic 55.0%
CGACAAGCCAGACAGCTGAT+GGG + contig624end:11236-11255 None:intergenic 55.0%
CTACATCACCCTTGCCCAAC+CGG - contig624end:11176-11195 MsG0080049038.01.T01:intron 55.0%
CTGCAAGCATTATGGGGCCT+CGG - contig624end:11132-11151 MsG0080049038.01.T01:intron 55.0%
TATCCAACCACCTAGTGGGG+TGG - contig624end:11736-11755 MsG0080049038.01.T01:CDS 55.0%
TCATCTGCAGCCCTGCAGAT+TGG + contig624end:11763-11782 None:intergenic 55.0%
TCTTCGGCTTCAACGGTCCA+GGG + contig624end:10261-10280 None:intergenic 55.0%
TGCAAGCATTATGGGGCCTC+GGG - contig624end:11133-11152 MsG0080049038.01.T01:intron 55.0%
TGCTACGGCAAGCTAGAAGC+TGG - contig624end:11414-11433 MsG0080049038.01.T01:intron 55.0%
TGGGTCGGTACGGTGTAAAG+CGG - contig624end:10194-10213 MsG0080049038.01.T01:exon 55.0%
TGTCTGCATGTGGGGGTCTT+AGG - contig624end:13078-13097 MsG0080049038.01.T01:exon 55.0%
! CAGTCCGGTTTGATGGACGA+CGG - contig624end:12044-12063 MsG0080049038.01.T01:CDS 55.0%
! CCATCAGCTGTCTGGCTTGT+CGG - contig624end:11234-11253 MsG0080049038.01.T01:intron 55.0%
! GGTGGACTCCTTGAACTCGT+AGG - contig624end:12364-12383 MsG0080049038.01.T01:intron 55.0%
! GTCATTGGGTCAGGTGGGTT+GGG - contig624end:11060-11079 MsG0080049038.01.T01:CDS 55.0%
AGTCCACCCCCAGGGTGTAT+TGG + contig624end:12352-12371 None:intergenic 60.0%
AGTGGGGTGGACCAATCTGC+AGG - contig624end:11749-11768 MsG0080049038.01.T01:intron 60.0%
AGTTCAAGGAGTCCACCCCC+AGG + contig624end:12361-12380 None:intergenic 60.0%
CAGCTGATCCAAGAACCCCG+AGG + contig624end:11152-11171 None:intergenic 60.0%
CCAGCTCCAATACACCCTGG+GGG - contig624end:12343-12362 MsG0080049038.01.T01:intron 60.0%
CCGACAAGCCAGACAGCTGA+TGG + contig624end:11237-11256 None:intergenic 60.0%
CGGTTGGGCAAGGGTGATGT+AGG + contig624end:11178-11197 None:intergenic 60.0%
CGTCATTGGGTCAGGTGGGT+TGG - contig624end:11059-11078 MsG0080049038.01.T01:CDS 60.0%
CTTCGGCTTCAACGGTCCAG+GGG + contig624end:10260-10279 None:intergenic 60.0%
GCAAGCATTATGGGGCCTCG+GGG - contig624end:11134-11153 MsG0080049038.01.T01:intron 60.0%
GTCGGTACGGTGTAAAGCGG+CGG - contig624end:10197-10216 MsG0080049038.01.T01:exon 60.0%
GTGGGGTGGACCAATCTGCA+GGG - contig624end:11750-11769 MsG0080049038.01.T01:intron 60.0%
GTTCAAGGAGTCCACCCCCA+GGG + contig624end:12360-12379 None:intergenic 60.0%
TCGGTACGGTGTAAAGCGGC+GGG - contig624end:10198-10217 MsG0080049038.01.T01:exon 60.0%
TTATGGGGCCTCGGGGTTCT+TGG - contig624end:11141-11160 MsG0080049038.01.T01:intron 60.0%
! GATTGGTCCACCCCACTAGG+TGG + contig624end:11746-11765 None:intergenic 60.0%
! GCAGATTGGTCCACCCCACT+AGG + contig624end:11749-11768 None:intergenic 60.0%
CCCCCAGGGTGTATTGGAGC+TGG + contig624end:12346-12365 None:intergenic 65.0%
GCTCCAATACACCCTGGGGG+TGG - contig624end:12346-12365 MsG0080049038.01.T01:intron 65.0%
GGTCCACCCCACTAGGTGGT+TGG + contig624end:11742-11761 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
contig624end gene 10001 13171 10001 ID=MsG0080049038.01;
contig624end mRNA 10001 13171 10001 ID=MsG0080049038.01.T01;Parent=MsG0080049038.01
contig624end exon 10001 10936 10001 ID=MsG0080049038.01.T01.exon;Parent=MsG0080049038.01.T01
contig624end CDS 10835 10936 10835 ID=MsG0080049038.01.T01.cds;Parent=MsG0080049038.01.T01
contig624end CDS 11027 11125 11027 ID=MsG0080049038.01.T01.cds;Parent=MsG0080049038.01.T01
contig624end exon 11027 11125 11027 ID=MsG0080049038.01.T01.exon;Parent=MsG0080049038.01.T01
contig624end CDS 11693 11763 11693 ID=MsG0080049038.01.T01.cds;Parent=MsG0080049038.01.T01
contig624end exon 11693 11763 11693 ID=MsG0080049038.01.T01.exon;Parent=MsG0080049038.01.T01
contig624end CDS 11875 12232 11875 ID=MsG0080049038.01.T01.cds;Parent=MsG0080049038.01.T01
contig624end exon 11875 12232 11875 ID=MsG0080049038.01.T01.exon;Parent=MsG0080049038.01.T01
contig624end CDS 12882 13112 12882 ID=MsG0080049038.01.T01.cds;Parent=MsG0080049038.01.T01
contig624end exon 12882 13171 12882 ID=MsG0080049038.01.T01.exon;Parent=MsG0080049038.01.T01
Gene Sequence

>MsG0080049038.01.T01

ATGGCGTTACAAGGATTAAGTACTGTTTCTGTGGCGGTTTCAATATCTGTAAGGCCTTCCATTTCTAATCTTGTTCGAATTCCTTCTTCAAGTTTATGTCTTGGCGGTCGGGTCCCTTCTCCGAGAATCAGAATTGGGTCGGTACGGTGTAAAGCGGCGGGAGAAAACCAACAACAAGTTTATAACGGCGTTTATGGCCCCTGGACCGTTGAAGCCGAAGATGTCAAAGAGGTTATATCGTACCGATCAGGATTGGTAACAGCTGCGGCATCGTTCGTCATCGCTGCATCTGCCGCCTATTTGCCCGATGACCTAAGTGATACGCTCAAGCAAAACATTGATTTTTTTTACGTCATTGGGTCAGGTGGGTTGGGTTTATCATTATTCTTGATTCATATCTATGTGACTGAAATCAAGCGCACTCTGCAAGCATTATGGGGCCTCGGGGTTCTTGGATCAGCTGCAACCTACATCACCCTTGCCCAACCGGCTAATAAAACTTTAATACAGTATGTTATTGATAACCCATCAGCTGTCTGGCTTGTCGGTCCTCTTTTTGCTGCTTTGACAGGACTTGTTTTCAAGGAAGGGCTCTGCTACGGCAAGCTAGAAGCTGGAGCACTCACGTTTATTATTCCTATTCTTCTTCTCGGACATCTGTCCGGTTTGATGGACGACGGAACTAAACTTACTTTGCTTGCTTTATGGATGGGTCTTTTTGTGATATTTGCCGGAAGGAAATTCACTCAGCCCATCAAGGATGACATCGGTGACAAGTCCGTTTTCACGTTCAAATCTCTCCGTGATGACGAAAAGAAAGCCTTGATTGAGAAACTGGAACAACAAAAAACTCAGTATTAA

Protein sequence

>MsG0080049038.01.T01

MALQGLSTVSVAVSISVRPSISNLVRIPSSSLCLGGRVPSPRIRIGSVRCKAAGENQQQVYNGVYGPWTVEAEDVKEVISYRSGLVTAAASFVIAASAAYLPDDLSDTLKQNIDFFYVIGSGGLGLSLFLIHIYVTEIKRTLQALWGLGVLGSAATYITLAQPANKTLIQYVIDNPSAVWLVGPLFAALTGLVFKEGLCYGKLEAGALTFIIPILLLGHLSGLMDDGTKLTLLALWMGLFVIFAGRKFTQPIKDDIGDKSVFTFKSLRDDEKKALIEKLEQQKTQY*