AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048488.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048488.01.T01 MTR_5g086590 72.689 238 61 2 283 519 5 239 1.24e-121 358
MsG0080048488.01.T01 MTR_5g096910 47.072 444 173 10 105 537 2 394 1.27e-120 361
MsG0080048488.01.T01 MTR_5g037680 46.977 430 172 8 116 536 4 386 5.00e-115 349
MsG0080048488.01.T01 MTR_5g069390 44.622 437 187 9 113 534 19 415 2.60e-109 335
MsG0080048488.01.T01 MTR_0129s0070 42.140 458 184 11 107 542 4 402 1.07e-105 323
MsG0080048488.01.T01 MTR_5g059430 42.919 459 194 12 104 534 6 424 2.24e-104 320
MsG0080048488.01.T01 MTR_2g038680 42.366 465 172 14 108 535 5 410 5.03e-102 314
MsG0080048488.01.T01 MTR_0129s0120 42.282 447 185 12 107 535 4 395 1.78e-101 312
MsG0080048488.01.T01 MTR_5g097330 41.463 451 202 14 102 537 1 404 5.69e-96 298
MsG0080048488.01.T01 MTR_2g022000 43.256 430 163 10 117 513 13 394 2.07e-95 298
MsG0080048488.01.T01 MTR_3g011120 43.262 423 168 12 114 525 8 369 3.20e-95 295
MsG0080048488.01.T01 MTR_8g063440 41.958 429 180 11 117 533 9 380 5.40e-95 295
MsG0080048488.01.T01 MTR_7g017130 39.583 432 196 9 118 535 16 396 1.37e-93 291
MsG0080048488.01.T01 MTR_2g021800 40.444 450 192 8 117 536 13 416 1.36e-91 287
MsG0080048488.01.T01 MTR_7g017170 38.514 444 196 10 118 535 16 408 3.24e-91 286
MsG0080048488.01.T01 MTR_6g086825 40.652 460 189 14 105 535 55 459 4.94e-91 287
MsG0080048488.01.T01 MTR_8g012090 42.029 414 144 10 106 505 3 334 2.71e-90 281
MsG0080048488.01.T01 MTR_4g102410 40.343 466 186 13 100 534 44 448 2.79e-90 285
MsG0080048488.01.T01 MTR_7g017040 40.397 453 195 8 102 535 1 397 8.79e-89 279
MsG0080048488.01.T01 MTR_5g096630 40.481 457 176 11 119 537 17 415 1.51e-88 279
MsG0080048488.01.T01 MTR_5g097850 51.890 291 88 5 262 543 5 252 6.61e-88 271
MsG0080048488.01.T01 MTR_8g041270 40.870 460 187 14 106 535 1 405 1.05e-86 274
MsG0080048488.01.T01 MTR_0129s0050 38.377 456 185 11 117 535 11 407 4.72e-86 272
MsG0080048488.01.T01 MTR_6g080680 39.083 458 183 13 100 530 1 389 6.42e-86 271
MsG0080048488.01.T01 MTR_2g066200 39.052 443 198 12 108 535 2 387 6.10e-85 269
MsG0080048488.01.T01 MTR_5g097680 39.479 461 189 13 117 535 14 426 8.43e-85 270
MsG0080048488.01.T01 MTR_2g066170 38.991 436 196 10 114 535 6 385 1.30e-84 268
MsG0080048488.01.T01 MTR_7g069550 37.783 442 194 12 117 535 11 394 5.42e-84 266
MsG0080048488.01.T01 MTR_5g096900 49.008 353 129 14 113 459 6 313 6.56e-84 264
MsG0080048488.01.T01 MTR_4g117550 40.961 437 162 14 117 535 14 372 7.35e-84 266
MsG0080048488.01.T01 MTR_0054s0100 38.961 462 199 14 102 535 1 407 2.77e-83 265
MsG0080048488.01.T01 MTR_8g464770 40.284 422 188 10 117 530 9 374 5.39e-83 263
MsG0080048488.01.T01 MTR_0054s0090 39.462 446 187 13 118 535 15 405 6.61e-83 264
MsG0080048488.01.T01 MTR_2g065860 37.875 433 201 10 117 535 9 387 4.99e-82 261
MsG0080048488.01.T01 MTR_4g028680 38.739 444 196 12 114 535 10 399 5.43e-80 256
MsG0080048488.01.T01 MTR_5g024260 39.503 443 189 14 102 519 1 389 8.53e-80 256
MsG0080048488.01.T01 MTR_4g130330 39.326 445 188 13 116 535 3 390 1.72e-79 255
MsG0080048488.01.T01 MTR_2g021950 38.991 436 197 12 114 532 10 393 2.13e-79 254
MsG0080048488.01.T01 MTR_1g007450 40.000 425 183 14 118 522 10 382 2.57e-79 255
MsG0080048488.01.T01 MTR_7g111700 39.168 457 164 13 100 535 1 364 3.00e-79 253
MsG0080048488.01.T01 MTR_6g079810 39.602 452 188 13 114 534 64 461 3.27e-79 256
MsG0080048488.01.T01 MTR_4g028510 38.565 446 196 14 114 535 10 401 5.85e-79 256
MsG0080048488.01.T01 MTR_2g034700 38.389 422 194 10 114 529 8 369 1.75e-78 251
MsG0080048488.01.T01 MTR_1g053510 39.035 456 193 11 106 531 1 401 3.12e-78 252
MsG0080048488.01.T01 MTR_6g461660 38.307 449 204 13 101 532 4 396 3.84e-78 251
MsG0080048488.01.T01 MTR_0134s0060 36.044 455 201 11 118 535 10 411 7.43e-78 251
MsG0080048488.01.T01 MTR_8g039500 39.702 403 170 9 114 505 6 346 9.49e-78 249
MsG0080048488.01.T01 MTR_2g066150 37.644 433 180 14 114 535 6 359 1.47e-77 249
MsG0080048488.01.T01 MTR_2g104280 38.652 445 194 14 118 535 12 404 3.48e-77 249
MsG0080048488.01.T01 MTR_2g104340 39.150 447 180 14 118 535 12 395 3.88e-77 249
MsG0080048488.01.T01 MTR_5g097220 38.136 472 178 14 110 535 4 407 5.21e-77 249
MsG0080048488.01.T01 MTR_4g028660 36.136 440 206 10 114 532 10 395 6.23e-77 248
MsG0080048488.01.T01 MTR_4g027450 36.136 440 206 10 114 532 10 395 6.23e-77 248
MsG0080048488.01.T01 MTR_6g079770 36.761 457 193 12 118 534 15 415 8.48e-77 249
MsG0080048488.01.T01 MTR_4g055820 39.512 410 169 10 108 491 2 358 1.92e-76 246
MsG0080048488.01.T01 MTR_0831s0010 37.104 442 207 11 107 535 37 420 6.54e-76 246
MsG0080048488.01.T01 MTR_8g467670 37.123 431 202 12 114 535 8 378 6.93e-76 246
MsG0080048488.01.T01 MTR_5g097350 39.614 414 185 13 129 532 25 383 2.22e-75 244
MsG0080048488.01.T01 MTR_2g021770 36.344 454 198 11 117 535 9 406 5.02e-75 244
MsG0080048488.01.T01 MTR_6g090180 36.818 440 205 10 117 532 44 434 5.70e-75 244
MsG0080048488.01.T01 MTR_8g046310 38.979 431 201 13 105 531 1 373 8.15e-75 242
MsG0080048488.01.T01 MTR_2g065840 35.683 454 202 13 106 535 1 388 3.05e-74 241
MsG0080048488.01.T01 MTR_6g478230 37.719 456 188 15 110 535 17 406 1.35e-73 240
MsG0080048488.01.T01 MTR_8g033140 35.532 470 205 12 107 535 5 417 1.96e-73 240
MsG0080048488.01.T01 MTR_1g007410 36.819 459 203 14 95 528 2 398 2.26e-73 239
MsG0080048488.01.T01 MTR_8g064890 37.385 436 201 13 114 535 10 387 2.61e-72 236
MsG0080048488.01.T01 MTR_4g028750 37.650 417 184 13 116 511 12 373 8.91e-72 235
MsG0080048488.01.T01 MTR_5g091140 37.199 457 192 13 84 518 16 399 9.53e-72 235
MsG0080048488.01.T01 MTR_8g032980 36.481 466 189 12 116 533 12 418 1.34e-69 230
MsG0080048488.01.T01 MTR_4g014370 35.652 460 198 15 117 536 8 409 2.11e-69 229
MsG0080048488.01.T01 MTR_5g072060 36.744 430 173 12 115 519 1 356 1.32e-67 230
MsG0080048488.01.T01 MTR_5g092850 35.991 464 189 17 107 532 5 398 2.41e-67 223
MsG0080048488.01.T01 MTR_6g090250 36.343 443 181 11 138 531 29 419 2.75e-67 224
MsG0080048488.01.T01 MTR_5g074850 38.178 461 174 21 106 526 22 411 5.80e-67 233
MsG0080048488.01.T01 MTR_5g075370 38.242 455 166 21 116 526 4 387 5.85e-67 231
MsG0080048488.01.T01 MTR_8g033110 35.897 468 205 12 108 535 2 414 1.07e-66 222
MsG0080048488.01.T01 MTR_7g079640 37.255 408 177 12 119 513 12 353 1.32e-66 221
MsG0080048488.01.T01 MTR_2g064950 35.214 443 197 12 112 527 2 381 2.67e-66 221
MsG0080048488.01.T01 MTR_1g007430 38.083 386 149 11 131 494 7 324 6.04e-66 217
MsG0080048488.01.T01 MTR_8g036970 37.284 405 142 12 124 517 2 305 2.55e-65 217
MsG0080048488.01.T01 MTR_8g033090 35.371 458 204 11 115 535 9 411 1.96e-64 216
MsG0080048488.01.T01 MTR_8g046200 35.546 467 207 15 107 531 3 417 8.70e-64 214
MsG0080048488.01.T01 MTR_8g013000 35.236 403 190 9 112 494 2 353 1.19e-63 214
MsG0080048488.01.T01 MTR_7g016930 38.144 388 161 7 117 494 13 331 6.21e-63 209
MsG0080048488.01.T01 MTR_5g097820 41.722 302 130 6 107 404 10 269 1.84e-61 204
MsG0080048488.01.T01 MTR_8g018110 34.914 464 197 14 108 535 2 396 2.77e-61 207
MsG0080048488.01.T01 MTR_8g046220 35.332 467 192 15 107 531 3 401 6.45e-61 206
MsG0080048488.01.T01 MTR_5g064700 35.181 415 183 15 159 535 1 367 8.42e-61 205
MsG0080048488.01.T01 MTR_8g063330 35.680 412 172 13 108 491 2 348 1.20e-58 202
MsG0080048488.01.T01 MTR_4g007940 36.387 393 166 14 169 533 3 339 2.56e-58 197
MsG0080048488.01.T01 MTR_8g064790 33.563 435 185 12 106 535 1 336 4.17e-57 194
MsG0080048488.01.T01 MTR_6g078010 36.524 397 163 14 157 531 1 330 6.39e-57 194
MsG0080048488.01.T01 MTR_5g074800 34.975 406 168 14 159 535 1 339 9.91e-57 193
MsG0080048488.01.T01 MTR_5g043605 41.176 272 139 8 275 535 77 338 6.27e-54 187
MsG0080048488.01.T01 MTR_6g004450 44.000 225 109 5 324 537 52 270 1.18e-51 178
MsG0080048488.01.T01 MTR_6g079790 38.312 308 158 11 256 535 5 308 1.36e-51 179
MsG0080048488.01.T01 MTR_1g050308 33.255 424 170 12 117 535 31 346 6.01e-51 178
MsG0080048488.01.T01 MTR_5g023970 48.663 187 90 4 354 535 10 195 2.73e-49 169
MsG0080048488.01.T01 MTR_1g050312 36.503 326 133 9 197 515 16 274 1.79e-48 170
MsG0080048488.01.T01 MTR_5g096920 55.263 152 65 2 384 534 1 150 1.66e-47 162
MsG0080048488.01.T01 MTR_5g068490 39.051 274 146 11 265 535 21 276 1.91e-47 167
MsG0080048488.01.T01 MTR_8g063310 31.151 443 217 18 108 528 13 389 2.90e-47 170
MsG0080048488.01.T01 MTR_8g063370 30.465 430 217 14 116 528 20 384 5.77e-47 169
MsG0080048488.01.T01 MTR_5g092860 33.333 390 187 15 138 513 20 350 1.79e-46 167
MsG0080048488.01.T01 MTR_8g033000 32.843 408 160 12 183 535 14 362 3.12e-46 166
MsG0080048488.01.T01 MTR_5g066420 54.362 149 61 2 384 525 1 149 3.75e-46 159
MsG0080048488.01.T01 MTR_6g090260 48.108 185 88 4 355 531 75 259 4.22e-46 162
MsG0080048488.01.T01 MTR_6g090260 52.113 71 32 2 100 169 1 70 3.99e-12 67.0
MsG0080048488.01.T01 MTR_2g021920 41.350 237 112 7 320 532 36 269 7.05e-46 162
MsG0080048488.01.T01 MTR_5g022850 36.570 309 147 11 260 535 60 352 8.98e-44 159
MsG0080048488.01.T01 MTR_5g097540 58.451 142 54 3 354 494 96 233 2.76e-43 156
MsG0080048488.01.T01 MTR_7g104710 33.516 364 148 11 100 449 1 284 3.48e-43 156
MsG0080048488.01.T01 MTR_6g087620 38.328 287 130 10 260 526 20 279 6.80e-43 154
MsG0080048488.01.T01 MTR_5g076490 35.121 373 140 14 197 535 31 335 3.41e-41 152
MsG0080048488.01.T01 MTR_5g037190 34.983 303 129 7 113 407 9 251 1.46e-39 145
MsG0080048488.01.T01 MTR_5g097660 57.895 114 47 1 420 532 3 116 7.28e-39 138
MsG0080048488.01.T01 MTR_1g098180 36.154 260 133 8 291 533 120 363 8.15e-39 146
MsG0080048488.01.T01 MTR_1g098180 50.000 108 43 3 107 211 5 104 1.32e-20 94.0
MsG0080048488.01.T01 MTR_8g035690 36.691 278 132 10 297 535 30 302 2.51e-38 143
MsG0080048488.01.T01 MTR_7g023800 30.579 363 175 9 169 527 13 302 2.75e-38 143
MsG0080048488.01.T01 MTR_5g096070 40.654 214 49 5 117 329 23 159 1.05e-37 137
MsG0080048488.01.T01 MTR_1g076810 35.563 284 117 7 102 375 1 228 2.56e-37 146
MsG0080048488.01.T01 MTR_6g079730 50.758 132 65 0 400 531 14 145 2.10e-36 132
MsG0080048488.01.T01 MTR_2g104260 35.494 324 122 12 118 412 12 277 3.66e-35 133
MsG0080048488.01.T01 MTR_6g009350 41.053 190 93 5 324 499 11 195 5.58e-35 130
MsG0080048488.01.T01 MTR_3g018750 36.515 241 118 7 324 535 6 240 1.59e-34 130
MsG0080048488.01.T01 MTR_8g073570 40.092 217 74 7 118 332 8 170 2.46e-33 125
MsG0080048488.01.T01 MTR_7g019250 39.151 212 106 4 324 525 227 425 2.86e-33 132
MsG0080048488.01.T01 MTR_5g096050 58.716 109 32 2 384 479 1 109 3.24e-33 123
MsG0080048488.01.T01 MTR_4g014370 37.563 197 106 5 350 536 148 337 3.86e-33 129
MsG0080048488.01.T01 MTR_4g014370 40.645 155 73 5 106 256 8 147 9.42e-20 91.3
MsG0080048488.01.T01 MTR_6g070880 32.867 286 112 9 119 378 31 262 4.51e-33 127
MsG0080048488.01.T01 MTR_6g071420 32.867 286 112 9 119 378 31 262 4.51e-33 127
MsG0080048488.01.T01 MTR_6g465360 35.361 263 92 9 96 340 42 244 9.07e-33 127
MsG0080048488.01.T01 MTR_5g094350 34.277 318 151 12 114 421 7 276 1.05e-32 127
MsG0080048488.01.T01 MTR_8g063350 31.757 296 170 12 251 527 55 337 1.60e-32 128
MsG0080048488.01.T01 MTR_5g098950 36.019 211 100 5 293 494 90 274 2.75e-32 125
MsG0080048488.01.T01 MTR_5g091150 43.333 180 74 5 265 444 35 186 5.41e-32 122
MsG0080048488.01.T01 MTR_4g016000 40.670 209 92 9 296 489 2 193 2.38e-31 121
MsG0080048488.01.T01 MTR_5g097650 39.423 208 60 6 115 322 17 158 4.68e-30 115
MsG0080048488.01.T01 MTR_5g049560 40.437 183 68 3 157 335 1 146 1.29e-29 118
MsG0080048488.01.T01 MTR_3g030620 40.606 165 85 6 380 534 19 180 2.29e-29 114
MsG0080048488.01.T01 MTR_1g115205 32.278 316 114 13 96 391 1 236 1.67e-27 111
MsG0080048488.01.T01 MTR_1g047080 28.278 389 162 15 157 535 1 282 9.33e-27 110
MsG0080048488.01.T01 MTR_7g017120 40.642 187 105 3 354 535 80 265 1.05e-26 109
MsG0080048488.01.T01 MTR_7g017150 40.107 187 106 3 354 535 81 266 2.89e-26 108
MsG0080048488.01.T01 MTR_5g086780 46.667 105 56 0 408 512 124 228 1.81e-25 105
MsG0080048488.01.T01 MTR_5g086780 68.889 45 14 0 118 162 14 58 1.58e-11 64.7
MsG0080048488.01.T01 MTR_2g022020 42.373 118 66 1 415 532 1 116 4.12e-24 97.8
MsG0080048488.01.T01 MTR_5g036250 48.454 97 49 1 432 528 8 103 3.13e-23 97.4
MsG0080048488.01.T01 MTR_8g041440 50.000 100 27 1 117 216 12 88 2.92e-20 86.7
MsG0080048488.01.T01 MTR_7g101200 33.945 218 102 11 291 493 38 228 1.06e-19 89.0
MsG0080048488.01.T01 MTR_3g047580 45.882 85 46 0 108 192 2 86 5.30e-18 80.9
MsG0080048488.01.T01 MTR_2g028140 23.445 418 235 15 119 508 4 364 2.00e-17 85.1
MsG0080048488.01.T01 MTR_1g082540 50.505 99 11 3 1 99 1 61 6.67e-17 76.3
MsG0080048488.01.T01 MTR_3g019290 46.667 105 50 3 116 219 10 109 1.39e-16 78.2
MsG0080048488.01.T01 MTR_1g050305 53.571 84 34 2 437 515 21 104 4.97e-16 75.5
MsG0080048488.01.T01 MTR_5g022900 25.401 374 244 11 118 477 30 382 1.28e-15 80.1
MsG0080048488.01.T01 MTR_3g058480 33.333 153 93 4 275 424 144 290 2.98e-15 77.4
MsG0080048488.01.T01 MTR_0064s0160 22.363 474 273 16 100 543 22 430 3.87e-15 78.2
MsG0080048488.01.T01 MTR_3g097190 53.448 58 27 0 452 509 24 81 1.23e-14 72.8
MsG0080048488.01.T01 MTR_3g047540 44.872 78 41 2 353 428 4 81 1.87e-13 66.6
MsG0080048488.01.T01 MTR_3g036290 22.164 379 199 12 120 490 22 312 2.56e-13 72.0
MsG0080048488.01.T01 MTR_1g068835 23.596 267 175 10 260 508 79 334 3.90e-13 71.6
MsG0080048488.01.T01 MTR_3g036335 21.528 432 238 14 85 498 1 349 4.00e-13 71.6
MsG0080048488.01.T01 MTR_6g046320 25.253 396 237 17 120 494 39 396 4.13e-13 72.0
MsG0080048488.01.T01 MTR_4g070550 23.059 425 227 17 117 508 2 359 4.81e-13 71.6
MsG0080048488.01.T01 MTR_6g087660 51.429 70 32 1 114 181 12 81 7.39e-13 67.8
MsG0080048488.01.T01 MTR_7g013590 28.505 214 127 10 272 471 123 324 1.26e-12 70.1
MsG0080048488.01.T01 MTR_4g094400 40.000 105 47 2 381 469 7 111 1.53e-12 65.1
MsG0080048488.01.T01 MTR_5g021880 24.317 366 237 13 118 467 37 378 3.44e-12 69.3
MsG0080048488.01.T01 MTR_5g021880 24.317 366 237 13 118 467 37 378 3.51e-12 68.9
MsG0080048488.01.T01 MTR_5g021880 24.317 366 237 13 118 467 37 378 3.56e-12 69.3
MsG0080048488.01.T01 MTR_3g009310 26.638 229 144 9 275 498 141 350 3.57e-12 68.6
MsG0080048488.01.T01 MTR_5g097730 58.824 51 20 1 447 496 3 53 9.11e-12 60.8
MsG0080048488.01.T01 MTR_4g061340 27.419 248 140 10 275 496 120 353 1.15e-11 67.0
MsG0080048488.01.T01 MTR_3g007430 25.974 231 142 9 275 492 135 349 1.50e-11 66.6
MsG0080048488.01.T01 MTR_8g041490 37.838 111 37 2 117 227 12 90 1.79e-11 61.6
MsG0080048488.01.T01 MTR_2g078900 26.761 213 116 8 271 471 129 313 1.96e-11 66.2
MsG0080048488.01.T01 MTR_6g027890 25.806 279 137 13 263 498 30 281 2.33e-11 65.5
MsG0080048488.01.T01 MTR_0044s0300 23.360 381 212 10 96 471 14 319 2.34e-11 66.2
MsG0080048488.01.T01 MTR_3g024130 26.190 210 128 6 275 474 61 253 3.01e-11 65.1
MsG0080048488.01.T01 MTR_7g070440 28.095 210 128 8 275 467 98 301 3.39e-11 65.5
MsG0080048488.01.T01 MTR_2g031720 22.780 259 168 10 275 511 97 345 4.31e-11 65.5
MsG0080048488.01.T01 MTR_5g049520 76.316 38 9 0 476 513 22 59 4.97e-11 62.0
MsG0080048488.01.T01 MTR_3g013770 29.032 217 115 10 275 477 135 326 5.39e-11 65.1
MsG0080048488.01.T01 MTR_2g078870 26.829 205 116 8 275 471 58 236 7.02e-11 63.9
MsG0080048488.01.T01 MTR_2g021150 27.619 210 126 10 275 475 116 308 9.10e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048488.01.T01 AT3G06240 23.881 402 260 15 120 513 36 399 2.94e-14 75.5
MsG0080048488.01.T01 AT3G21120 28.736 174 94 9 260 421 92 247 6.56e-11 64.7
MsG0080048488.01.T01 AT4G22390 24.483 290 169 13 265 516 74 351 7.93e-11 64.7
MsG0080048488.01.T01 AT4G22390 24.601 313 189 15 233 516 57 351 8.78e-11 64.3

Find 117 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTATTTGTATTCTCTTTC+TGG 0.078612 contig333end:-35273 MsG0080048488.01.T01:CDS
CCTTGCCTCGATCATCTTAT+TGG 0.174104 contig333end:-34433 MsG0080048488.01.T01:CDS
GTGTGCCATCTGATCAATTT+TGG 0.179842 contig333end:-34813 MsG0080048488.01.T01:CDS
AACAATTTACGTTTCAGTTT+TGG 0.215516 contig333end:-34509 MsG0080048488.01.T01:CDS
ACACGATTAGGGTTAAATTT+TGG 0.252670 contig333end:+34832 None:intergenic
AATACAAATAATAATAAATT+TGG 0.260490 contig333end:+35283 None:intergenic
TGCCTGAGAATAATCCTTCT+TGG 0.261563 contig333end:-34936 MsG0080048488.01.T01:CDS
TGATCAGATGGCACACGATT+AGG 0.277260 contig333end:+34820 None:intergenic
AACAGAAACAAATACGTATT+TGG 0.278603 contig333end:-34677 MsG0080048488.01.T01:CDS
AAACGCTTCAAAGATTTAAA+AGG 0.279731 contig333end:+35459 None:intergenic
CTCTGCAAATATGACAGTTT+TGG 0.289584 contig333end:-36342 None:intergenic
CGCATCGTCAAATGTTGTTC+AGG 0.333084 contig333end:-35535 MsG0080048488.01.T01:CDS
CTCTTATGTAGATGACAGTT+TGG 0.358287 contig333end:-34608 MsG0080048488.01.T01:CDS
CCATTTCAAGAGGATGATAA+TGG 0.362066 contig333end:-35078 MsG0080048488.01.T01:CDS
AACAAGGGTTGTCAAATAAG+AGG 0.367149 contig333end:+35412 None:intergenic
ATTCACTTTGCTGATGTTAA+CGG 0.373509 contig333end:-36290 MsG0080048488.01.T01:CDS
CTCGATCATCTTATTGGAGC+TGG 0.375804 contig333end:-34427 MsG0080048488.01.T01:CDS
GATCAGATGGCACACGATTA+GGG 0.376900 contig333end:+34821 None:intergenic
TTTGTATATATTCCTCCAAT+TGG 0.379719 contig333end:+34265 None:intergenic
AAAGATGATTATAAGATGAT+TGG 0.383928 contig333end:-34871 MsG0080048488.01.T01:CDS
AGAATAGAGTCAAATTAGAT+TGG 0.387136 contig333end:-35239 MsG0080048488.01.T01:CDS
TTGGAAGAAGGCTTTCTTTG+TGG 0.400741 contig333end:+34284 None:intergenic
AAAGAAAGCCTTCTTCCAAT+TGG 0.403075 contig333end:-34280 MsG0080048488.01.T01:CDS
GATTGCTCATACTTTAACTA+AGG 0.403925 contig333end:-36060 MsG0080048488.01.T01:CDS
TCGTCATCATCCTCCTCATC+TGG 0.408698 contig333end:+35108 None:intergenic
CAAACTGTCATCTACATAAG+AGG 0.411595 contig333end:+34609 None:intergenic
GTCATCTACATAAGAGGGTA+TGG 0.414415 contig333end:+34615 None:intergenic
GAGTCCGACTCAGCTGTTAA+CGG 0.423178 contig333end:-36248 MsG0080048488.01.T01:CDS
ATCTTTACATTCAAACTTCG+AGG 0.426483 contig333end:-36111 MsG0080048488.01.T01:CDS
AAAGAATACCATTAAAACTA+AGG 0.435281 contig333end:+35037 None:intergenic
AGTGGTCTTCTCAAAACTAT+AGG 0.436461 contig333end:+35162 None:intergenic
CCATTATCATCCTCTTGAAA+TGG 0.438398 contig333end:+35078 None:intergenic
AGTTTGAATTCGTTGGTAGT+TGG 0.439341 contig333end:+34967 None:intergenic
TTAATAACATCAAGTGTCTC+TGG 0.444091 contig333end:+34572 None:intergenic
ACATCCTCGGTCAAAGCCTT+TGG 0.445894 contig333end:+35216 None:intergenic
GCTTGGTTTGATTTAAGTAC+CGG 0.449407 contig333end:-34361 MsG0080048488.01.T01:CDS
TCGACCGATCATTATCAAAT+CGG 0.449798 contig333end:-34907 MsG0080048488.01.T01:CDS
AGACACTTGATGTTATTAAA+CGG 0.452798 contig333end:-34568 MsG0080048488.01.T01:CDS
CTGATGTTAACGGATGGGAC+CGG 0.459946 contig333end:-36280 MsG0080048488.01.T01:CDS
GACATAATCATATATATTGT+GGG 0.460776 contig333end:+34224 None:intergenic
GAAAGCCTTCTTCCAATTGG+AGG 0.461588 contig333end:-34277 MsG0080048488.01.T01:CDS
TGGACTAAGCACTTCGTTGT+TGG 0.468288 contig333end:-34463 MsG0080048488.01.T01:CDS
TAAATTTGGCGTATCTCTTG+TGG 0.478062 contig333end:+35297 None:intergenic
AAATTTGGCGTATCTCTTGT+GGG 0.483442 contig333end:+35298 None:intergenic
TGTATTCTCTTTCTGGTGAG+AGG 0.484321 contig333end:-35266 MsG0080048488.01.T01:CDS
AGACATAATCATATATATTG+TGG 0.485257 contig333end:+34223 None:intergenic
ATAGCCTACACAGTAACTCT+TGG 0.486268 contig333end:-34783 MsG0080048488.01.T01:CDS
GTTAACATCAGCAAAGTGAA+TGG 0.492651 contig333end:+36292 None:intergenic
CGTAAACGAGTGTACTTGAA+TGG 0.501849 contig333end:-34721 MsG0080048488.01.T01:CDS
AAGATGATCGAGGCAAGGTA+AGG 0.502901 contig333end:+34438 None:intergenic
GGATGTCTATCGACTTCAAA+AGG 0.503568 contig333end:-35199 MsG0080048488.01.T01:CDS
AGGAATGAGTTTGAATTCGT+TGG 0.503942 contig333end:+34960 None:intergenic
AAAGTGAATGGAATCGAGTA+AGG 0.505018 contig333end:+36304 None:intergenic
CATCATCTTCTCTAAGATGT+AGG 0.507693 contig333end:+35322 None:intergenic
ATATTCCTCCAATTGGAAGA+AGG 0.507713 contig333end:+34272 None:intergenic
AACTCGGTGTAAAGGAATCA+TGG 0.507915 contig333end:-34483 MsG0080048488.01.T01:CDS
TTTGGGTGAACTCGGTGTAA+AGG 0.508652 contig333end:-34491 MsG0080048488.01.T01:CDS
CAGCTGTTAACGGATGGGAC+CGG 0.515653 contig333end:-36238 MsG0080048488.01.T01:CDS
TACCAAGAAGGATTATTCTC+AGG 0.518019 contig333end:+34934 None:intergenic
ATCTCCCAAAATTGATCAGA+TGG 0.520160 contig333end:+34808 None:intergenic
GTGCAAGCTCTATCGTCTCC+AGG 0.520926 contig333end:-36185 MsG0080048488.01.T01:CDS
ACTTGAATGGAGTGTCTCAT+TGG 0.521299 contig333end:-34708 MsG0080048488.01.T01:CDS
TTGAGAAGACCACTGGTACC+AGG 0.527358 contig333end:-35153 MsG0080048488.01.T01:CDS
ATAGAGAAGACAATATCATC+TGG 0.531548 contig333end:+35495 None:intergenic
CTTGGTTTGATTTAAGTACC+GGG 0.533853 contig333end:-34360 MsG0080048488.01.T01:CDS
CTTTGCTGATGTTAACGGAT+GGG 0.534210 contig333end:-36285 MsG0080048488.01.T01:CDS
TGTCTAAAAGCTGAATTCTA+CGG 0.534554 contig333end:-35015 MsG0080048488.01.T01:CDS
AAGAATACCATTAAAACTAA+GGG 0.540846 contig333end:+35038 None:intergenic
ACCGGGATGATCGATGAGAT+TGG 0.546732 contig333end:-34343 MsG0080048488.01.T01:CDS
TCGATCATCTTATTGGAGCT+GGG 0.549271 contig333end:-34426 MsG0080048488.01.T01:CDS
TTGAATGTGTACGTAAACCT+TGG 0.554355 contig333end:-35437 MsG0080048488.01.T01:CDS
AGCTGTTAACGGATGGGACC+GGG 0.560397 contig333end:-36237 MsG0080048488.01.T01:CDS
ACTTTGCTGATGTTAACGGA+TGG 0.563743 contig333end:-36286 MsG0080048488.01.T01:CDS
GCTCTATCGTCTCCAGGTCA+TGG 0.563859 contig333end:-36179 MsG0080048488.01.T01:CDS
TGATGTTAACGGATGGGACC+GGG 0.574282 contig333end:-36279 MsG0080048488.01.T01:CDS
TCCTCATCTGGATGAACATG+TGG 0.576591 contig333end:+35120 None:intergenic
TGCTCATACTTTAACTAAGG+CGG 0.579886 contig333end:-36057 MsG0080048488.01.T01:intron
GAAGGATTATTCTCAGGCAA+AGG 0.581560 contig333end:+34940 None:intergenic
CCATCCGTTAACAGCTGAGT+CGG 0.586001 contig333end:+36244 None:intergenic
ACAAGGGTTGTCAAATAAGA+GGG 0.590344 contig333end:+35413 None:intergenic
CCGACTCAGCTGTTAACGGA+TGG 0.591780 contig333end:-36244 MsG0080048488.01.T01:CDS
TGAATGGAGTGTCTCATTGG+TGG 0.594828 contig333end:-34705 MsG0080048488.01.T01:CDS
GCGAAACGAGAGTTGTATTG+TGG 0.596166 contig333end:-34993 MsG0080048488.01.T01:CDS
TCATCTACATAAGAGGGTAT+GGG 0.599356 contig333end:+34616 None:intergenic
ACATGTGGAACAAACCATCC+TGG 0.600545 contig333end:+35135 None:intergenic
TCTTCCAAGAGTTACTGTGT+AGG 0.601305 contig333end:+34779 None:intergenic
TTGGCCAAAGGCTTTGACCG+AGG 0.603491 contig333end:-35220 MsG0080048488.01.T01:CDS
AGATGATCGAGGCAAGGTAA+GGG 0.608476 contig333end:+34439 None:intergenic
CGACTCAGCTGTTAACGGAT+GGG 0.608487 contig333end:-36243 MsG0080048488.01.T01:CDS
ACCAATCTCATCGATCATCC+CGG 0.608557 contig333end:+34342 None:intergenic
AAACTGTCATCTACATAAGA+GGG 0.610107 contig333end:+34610 None:intergenic
TTGCACTACAGTAGCTGAGT+CGG 0.613291 contig333end:+36202 None:intergenic
ACATGTTCATCCAGATGAGG+AGG 0.621711 contig333end:-35118 MsG0080048488.01.T01:CDS
GAATGGAGTGTCTCATTGGT+GGG 0.622509 contig333end:-34704 MsG0080048488.01.T01:CDS
GATTCTGAATCACCATGACC+TGG 0.626076 contig333end:+36167 None:intergenic
TCCACATGTTCATCCAGATG+AGG 0.627843 contig333end:-35121 MsG0080048488.01.T01:CDS
GTCTTCTCAAAACTATAGGA+CGG 0.629432 contig333end:+35166 None:intergenic
TTGAAGTCGATAGACATCCT+CGG 0.634485 contig333end:+35203 None:intergenic
TTGTCAAATAAGAGGGACCA+AGG 0.634881 contig333end:+35420 None:intergenic
TCGGTCGAAACATACCAAGA+AGG 0.636623 contig333end:+34922 None:intergenic
ATAACCGATTTGATAATGAT+CGG 0.640280 contig333end:+34903 None:intergenic
AGTCAAATTAGATTGGCCAA+AGG 0.643209 contig333end:-35232 MsG0080048488.01.T01:CDS
CGACGACGGACCATTTCAAG+AGG 0.643402 contig333end:-35088 MsG0080048488.01.T01:CDS
GGTGTCGTTTGACTTCTGCA+AGG 0.643769 contig333end:-34656 MsG0080048488.01.T01:CDS
GAGGAGGATGATGACGACGA+CGG 0.644220 contig333end:-35102 MsG0080048488.01.T01:CDS
AGTCGGACTCGAAGACAACC+CGG 0.645689 contig333end:+36219 None:intergenic
AGTCGGACTCGAAGACAACC+CGG 0.645689 contig333end:+36261 None:intergenic
CCAATAAGATGATCGAGGCA+AGG 0.646718 contig333end:+34433 None:intergenic
TGGTACATAGTCATGAAACA+AGG 0.647842 contig333end:+35396 None:intergenic
AGAATACCATTAAAACTAAG+GGG 0.648935 contig333end:+35039 None:intergenic
CTGAACAACATTTGACGATG+CGG 0.650099 contig333end:+35536 None:intergenic
GAAGACCACTGGTACCAGGA+TGG 0.650110 contig333end:-35149 MsG0080048488.01.T01:CDS
ACAAACCATCCTGGTACCAG+TGG 0.656773 contig333end:+35144 None:intergenic
GGTACATAGTCATGAAACAA+GGG 0.688624 contig333end:+35397 None:intergenic
GTATCATCATAATAAGAACA+TGG 0.689910 contig333end:+35354 None:intergenic
CAGCTCCAATAAGATGATCG+AGG 0.696833 contig333end:+34428 None:intergenic
GTCTTGTTAAAAGATAGTTG+TGG 0.704602 contig333end:+35376 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTATTATATATA+AGG - contig333end:34917-34936 MsG0080048488.01.T01:CDS 0.0%
!! AAGGATAATAATAAAAAATA+CGG + contig333end:34551-34570 None:intergenic 10.0%
!!! ATTATACCAATATTTTTTTT+TGG + contig333end:34732-34751 None:intergenic 10.0%
!! AAAGAATACCATTAAAACTA+AGG + contig333end:35529-35548 None:intergenic 20.0%
!! AAAGATGATTATAAGATGAT+TGG - contig333end:35692-35711 MsG0080048488.01.T01:intron 20.0%
!! AAGAATACCATTAAAACTAA+GGG + contig333end:35528-35547 None:intergenic 20.0%
!! TATTATTTGTATTCTCTTTC+TGG - contig333end:35290-35309 MsG0080048488.01.T01:CDS 20.0%
!! TTCCTTCCAAAAAAAAATAT+TGG - contig333end:34723-34742 MsG0080048488.01.T01:CDS 20.0%
!!! TACCAATATTTTTTTTTGGA+AGG + contig333end:34728-34747 None:intergenic 20.0%
! AAACGCTTCAAAGATTTAAA+AGG + contig333end:35107-35126 None:intergenic 25.0%
! AACAAAAGAAAGAAGAGAAA+AGG + contig333end:34981-35000 None:intergenic 25.0%
! AACAAATGTTCAATACAAGA+AGG + contig333end:34570-34589 None:intergenic 25.0%
! AACAGAAACAAATACGTATT+TGG - contig333end:35886-35905 MsG0080048488.01.T01:intron 25.0%
! ACAAAAGAAAGAAGAGAAAA+GGG + contig333end:34980-34999 None:intergenic 25.0%
! AGAATACCATTAAAACTAAG+GGG + contig333end:35527-35546 None:intergenic 25.0%
! AGAATAGAGTCAAATTAGAT+TGG - contig333end:35324-35343 MsG0080048488.01.T01:CDS 25.0%
! AGACACTTGATGTTATTAAA+CGG - contig333end:35995-36014 MsG0080048488.01.T01:intron 25.0%
! ATACTCTTCAGAAAAAAAGA+CGG - contig333end:36172-36191 MsG0080048488.01.T01:CDS 25.0%
! GTATCATCATAATAAGAACA+TGG + contig333end:35212-35231 None:intergenic 25.0%
! TATATATAAGGAAACATACG+TGG - contig333end:34929-34948 MsG0080048488.01.T01:CDS 25.0%
! TTTGTATATATTCCTCCAAT+TGG + contig333end:36301-36320 None:intergenic 25.0%
!! AACAATTTACGTTTCAGTTT+TGG - contig333end:36054-36073 MsG0080048488.01.T01:intron 25.0%
!! ACAATTTACGTTTCAGTTTT+GGG - contig333end:36055-36074 MsG0080048488.01.T01:intron 25.0%
!!! ACTACTCATCTTTTTTTTTC+AGG + contig333end:34646-34665 None:intergenic 25.0%
!!! ATAACCGATTTGATAATGAT+CGG + contig333end:35663-35682 None:intergenic 25.0%
!!! CTACTCATCTTTTTTTTTCA+GGG + contig333end:34645-34664 None:intergenic 25.0%
AAACTGTCATCTACATAAGA+GGG + contig333end:35956-35975 None:intergenic 30.0%
ATAGAGAAGACAATATCATC+TGG + contig333end:35071-35090 None:intergenic 30.0%
ATCTTTACATTCAAACTTCG+AGG - contig333end:34452-34471 MsG0080048488.01.T01:CDS 30.0%
ATTCACTTTGCTGATGTTAA+CGG - contig333end:34273-34292 MsG0080048488.01.T01:CDS 30.0%
GATTGCTCATACTTTAACTA+AGG - contig333end:34503-34522 MsG0080048488.01.T01:CDS 30.0%
TGTCTAAAAGCTGAATTCTA+CGG - contig333end:35548-35567 MsG0080048488.01.T01:CDS 30.0%
TTAATAACATCAAGTGTCTC+TGG + contig333end:35994-36013 None:intergenic 30.0%
! ACACGATTAGGGTTAAATTT+TGG + contig333end:35734-35753 None:intergenic 30.0%
! GTCTTGTTAAAAGATAGTTG+TGG + contig333end:35190-35209 None:intergenic 30.0%
!! CTTCTTTCTTTTGTTTCAGA+TGG - contig333end:34986-35005 MsG0080048488.01.T01:CDS 30.0%
!!! TGACAGTTTGGATTTTAACT+TGG - contig333end:35967-35986 MsG0080048488.01.T01:intron 30.0%
!!! TTACATCCCCTTAGTTTTAA+TGG - contig333end:35518-35537 MsG0080048488.01.T01:CDS 30.0%
AAAGAAAGCCTTCTTCCAAT+TGG - contig333end:36283-36302 MsG0080048488.01.T01:CDS 35.0%
AAAGTGAATGGAATCGAGTA+AGG + contig333end:34262-34281 None:intergenic 35.0%
AAATTTGGCGTATCTCTTGT+GGG + contig333end:35268-35287 None:intergenic 35.0%
AACAAGGGTTGTCAAATAAG+AGG + contig333end:35154-35173 None:intergenic 35.0%
ACAAGGGTTGTCAAATAAGA+GGG + contig333end:35153-35172 None:intergenic 35.0%
AGGAATGAGTTTGAATTCGT+TGG + contig333end:35606-35625 None:intergenic 35.0%
AGTGGTCTTCTCAAAACTAT+AGG + contig333end:35404-35423 None:intergenic 35.0%
ATATTCCTCCAATTGGAAGA+AGG + contig333end:36294-36313 None:intergenic 35.0%
ATCTCCCAAAATTGATCAGA+TGG + contig333end:35758-35777 None:intergenic 35.0%
CAAACTGTCATCTACATAAG+AGG + contig333end:35957-35976 None:intergenic 35.0%
CCATTATCATCCTCTTGAAA+TGG + contig333end:35488-35507 None:intergenic 35.0%
CCATTTCAAGAGGATGATAA+TGG - contig333end:35485-35504 MsG0080048488.01.T01:CDS 35.0%
CGTTTACGAATCGAAAAAGA+AGG + contig333end:35830-35849 None:intergenic 35.0%
CTCTTATGTAGATGACAGTT+TGG - contig333end:35955-35974 MsG0080048488.01.T01:intron 35.0%
GGTACATAGTCATGAAACAA+GGG + contig333end:35169-35188 None:intergenic 35.0%
GTCTTCTCAAAACTATAGGA+CGG + contig333end:35400-35419 None:intergenic 35.0%
GTTAACATCAGCAAAGTGAA+TGG + contig333end:34274-34293 None:intergenic 35.0%
TAAATTTGGCGTATCTCTTG+TGG + contig333end:35269-35288 None:intergenic 35.0%
TACCAAGAAGGATTATTCTC+AGG + contig333end:35632-35651 None:intergenic 35.0%
TCGACCGATCATTATCAAAT+CGG - contig333end:35656-35675 MsG0080048488.01.T01:intron 35.0%
TGCTCATACTTTAACTAAGG+CGG - contig333end:34506-34525 MsG0080048488.01.T01:CDS 35.0%
TGGTACATAGTCATGAAACA+AGG + contig333end:35170-35189 None:intergenic 35.0%
TTGAATGTGTACGTAAACCT+TGG - contig333end:35126-35145 MsG0080048488.01.T01:CDS 35.0%
! AGTCAAATTAGATTGGCCAA+AGG - contig333end:35331-35350 MsG0080048488.01.T01:CDS 35.0%
! CTTGGTTTGATTTAAGTACC+GGG - contig333end:36203-36222 MsG0080048488.01.T01:CDS 35.0%
! GCTTGGTTTGATTTAAGTAC+CGG - contig333end:36202-36221 MsG0080048488.01.T01:CDS 35.0%
! TCATCTACATAAGAGGGTAT+GGG + contig333end:35950-35969 None:intergenic 35.0%
! TGTGCCATCTGATCAATTTT+GGG - contig333end:35751-35770 MsG0080048488.01.T01:intron 35.0%
!! AGTTTGAATTCGTTGGTAGT+TGG + contig333end:35599-35618 None:intergenic 35.0%
!! CATCATCTTCTCTAAGATGT+AGG + contig333end:35244-35263 None:intergenic 35.0%
!!! TATAGTTTTGAGAAGACCAC+TGG - contig333end:35403-35422 MsG0080048488.01.T01:CDS 35.0%
AAAAAGACGGTGAACTAGCT+TGG - contig333end:36185-36204 MsG0080048488.01.T01:CDS 40.0%
AACTAAGGCGGTCTGTTATT+GGG - contig333end:34518-34537 MsG0080048488.01.T01:CDS 40.0%
ACTTTGCTGATGTTAACGGA+TGG - contig333end:34277-34296 MsG0080048488.01.T01:CDS 40.0%
ATAGCCTACACAGTAACTCT+TGG - contig333end:35780-35799 MsG0080048488.01.T01:intron 40.0%
CGTAAACGAGTGTACTTGAA+TGG - contig333end:35842-35861 MsG0080048488.01.T01:intron 40.0%
CTGAACAACATTTGACGATG+CGG + contig333end:35030-35049 None:intergenic 40.0%
GAAGGATTATTCTCAGGCAA+AGG + contig333end:35626-35645 None:intergenic 40.0%
GTCATCTACATAAGAGGGTA+TGG + contig333end:35951-35970 None:intergenic 40.0%
TAACTAAGGCGGTCTGTTAT+TGG - contig333end:34517-34536 MsG0080048488.01.T01:CDS 40.0%
TCGATCATCTTATTGGAGCT+GGG - contig333end:36137-36156 MsG0080048488.01.T01:CDS 40.0%
TCTTCCAAGAGTTACTGTGT+AGG + contig333end:35787-35806 None:intergenic 40.0%
TGCCTGAGAATAATCCTTCT+TGG - contig333end:35627-35646 MsG0080048488.01.T01:intron 40.0%
TTGAAGTCGATAGACATCCT+CGG + contig333end:35363-35382 None:intergenic 40.0%
TTGGAAGAAGGCTTTCTTTG+TGG + contig333end:36282-36301 None:intergenic 40.0%
TTGTCAAATAAGAGGGACCA+AGG + contig333end:35146-35165 None:intergenic 40.0%
! ACTTGAATGGAGTGTCTCAT+TGG - contig333end:35855-35874 MsG0080048488.01.T01:intron 40.0%
! CTTTGCTGATGTTAACGGAT+GGG - contig333end:34278-34297 MsG0080048488.01.T01:CDS 40.0%
! GTGTGCCATCTGATCAATTT+TGG - contig333end:35750-35769 MsG0080048488.01.T01:intron 40.0%
! TGTATTCTCTTTCTGGTGAG+AGG - contig333end:35297-35316 MsG0080048488.01.T01:CDS 40.0%
!! AACTCGGTGTAAAGGAATCA+TGG - contig333end:36080-36099 MsG0080048488.01.T01:CDS 40.0%
!! GGATGTCTATCGACTTCAAA+AGG - contig333end:35364-35383 MsG0080048488.01.T01:CDS 40.0%
!!! GTTTCAGTTTTGGGTGAACT+CGG - contig333end:36064-36083 MsG0080048488.01.T01:CDS 40.0%
AAGATGATCGAGGCAAGGTA+AGG + contig333end:36128-36147 None:intergenic 45.0%
AAGGAAACATACGTGGTAGC+AGG - contig333end:34936-34955 MsG0080048488.01.T01:CDS 45.0%
ACATGTGGAACAAACCATCC+TGG + contig333end:35431-35450 None:intergenic 45.0%
ACATGTTCATCCAGATGAGG+AGG - contig333end:35445-35464 MsG0080048488.01.T01:CDS 45.0%
ACCAATCTCATCGATCATCC+CGG + contig333end:36224-36243 None:intergenic 45.0%
AGATGATCGAGGCAAGGTAA+GGG + contig333end:36127-36146 None:intergenic 45.0%
CAGCTCCAATAAGATGATCG+AGG + contig333end:36138-36157 None:intergenic 45.0%
CCAATAAGATGATCGAGGCA+AGG + contig333end:36133-36152 None:intergenic 45.0%
CCTTGCCTCGATCATCTTAT+TGG - contig333end:36130-36149 MsG0080048488.01.T01:CDS 45.0%
CGCATCGTCAAATGTTGTTC+AGG - contig333end:35028-35047 MsG0080048488.01.T01:CDS 45.0%
CTCGATCATCTTATTGGAGC+TGG - contig333end:36136-36155 MsG0080048488.01.T01:CDS 45.0%
GAAAGCCTTCTTCCAATTGG+AGG - contig333end:36286-36305 MsG0080048488.01.T01:CDS 45.0%
GATCAGATGGCACACGATTA+GGG + contig333end:35745-35764 None:intergenic 45.0%
GATTCTGAATCACCATGACC+TGG + contig333end:34399-34418 None:intergenic 45.0%
GCGAAACGAGAGTTGTATTG+TGG - contig333end:35570-35589 MsG0080048488.01.T01:intron 45.0%
TCCACATGTTCATCCAGATG+AGG - contig333end:35442-35461 MsG0080048488.01.T01:CDS 45.0%
TCCTCATCTGGATGAACATG+TGG + contig333end:35446-35465 None:intergenic 45.0%
TCGGTCGAAACATACCAAGA+AGG + contig333end:35644-35663 None:intergenic 45.0%
TGATCAGATGGCACACGATT+AGG + contig333end:35746-35765 None:intergenic 45.0%
TGGACTAAGCACTTCGTTGT+TGG - contig333end:36100-36119 MsG0080048488.01.T01:CDS 45.0%
TTGCACTACAGTAGCTGAGT+CGG + contig333end:34364-34383 None:intergenic 45.0%
! GAATGGAGTGTCTCATTGGT+GGG - contig333end:35859-35878 MsG0080048488.01.T01:intron 45.0%
! TGAATGGAGTGTCTCATTGG+TGG - contig333end:35858-35877 MsG0080048488.01.T01:intron 45.0%
!! TTTGGGTGAACTCGGTGTAA+AGG - contig333end:36072-36091 MsG0080048488.01.T01:CDS 45.0%
!! AATACAAATAATAATAAATT+TGG + contig333end:35283-35302 None:intergenic 5.0%
!! TATATAAATAATATAGTATT+GGG - contig333end:34825-34844 MsG0080048488.01.T01:CDS 5.0%
!! TTATATAAATAATATAGTAT+TGG - contig333end:34824-34843 MsG0080048488.01.T01:CDS 5.0%
ACAAACCATCCTGGTACCAG+TGG + contig333end:35422-35441 None:intergenic 50.0%
ACATCCTCGGTCAAAGCCTT+TGG + contig333end:35350-35369 None:intergenic 50.0%
ACCGGGATGATCGATGAGAT+TGG - contig333end:36220-36239 MsG0080048488.01.T01:CDS 50.0%
CCATCCGTTAACAGCTGAGT+CGG + contig333end:34322-34341 None:intergenic 50.0%
GAGTCCGACTCAGCTGTTAA+CGG - contig333end:34315-34334 MsG0080048488.01.T01:CDS 50.0%
TCGTCATCATCCTCCTCATC+TGG + contig333end:35458-35477 None:intergenic 50.0%
TTGAGAAGACCACTGGTACC+AGG - contig333end:35410-35429 MsG0080048488.01.T01:CDS 50.0%
! CGACTCAGCTGTTAACGGAT+GGG - contig333end:34320-34339 MsG0080048488.01.T01:CDS 50.0%
! CTGATGTTAACGGATGGGAC+CGG - contig333end:34283-34302 MsG0080048488.01.T01:CDS 50.0%
! TGATGTTAACGGATGGGACC+GGG - contig333end:34284-34303 MsG0080048488.01.T01:CDS 50.0%
!! GGTGTCGTTTGACTTCTGCA+AGG - contig333end:35907-35926 MsG0080048488.01.T01:intron 50.0%
AGTCGGACTCGAAGACAACC+CGG + contig333end:34305-34324 None:intergenic 55.0%
CCGACTCAGCTGTTAACGGA+TGG - contig333end:34319-34338 MsG0080048488.01.T01:CDS 55.0%
CGACGACGGACCATTTCAAG+AGG - contig333end:35475-35494 MsG0080048488.01.T01:CDS 55.0%
GAAGACCACTGGTACCAGGA+TGG - contig333end:35414-35433 MsG0080048488.01.T01:CDS 55.0%
GCTCTATCGTCTCCAGGTCA+TGG - contig333end:34384-34403 MsG0080048488.01.T01:CDS 55.0%
GTGCAAGCTCTATCGTCTCC+AGG - contig333end:34378-34397 MsG0080048488.01.T01:CDS 55.0%
! AGCTGTTAACGGATGGGACC+GGG - contig333end:34326-34345 MsG0080048488.01.T01:CDS 55.0%
! CAGCTGTTAACGGATGGGAC+CGG - contig333end:34325-34344 MsG0080048488.01.T01:CDS 55.0%
! GAGGAGGATGATGACGACGA+CGG - contig333end:35461-35480 MsG0080048488.01.T01:CDS 55.0%
! TTGGCCAAAGGCTTTGACCG+AGG - contig333end:35343-35362 MsG0080048488.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
contig333end gene 34231 36354 34231 ID=MsG0080048488.01;Name=MsG0080048488.01
contig333end mRNA 34231 36354 34231 ID=MsG0080048488.01.T01;Parent=MsG0080048488.01;Name=MsG0080048488.01.T01;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|2|0|548
contig333end exon 36058 36354 36058 ID=MsG0080048488.01.T01:exon:7106;Parent=MsG0080048488.01.T01
contig333end exon 34231 35580 34231 ID=MsG0080048488.01.T01:exon:7107;Parent=MsG0080048488.01.T01
contig333end CDS 36058 36354 36058 ID=MsG0080048488.01.T01:cds;Parent=MsG0080048488.01.T01
contig333end CDS 34231 35580 34231 ID=MsG0080048488.01.T01:cds;Parent=MsG0080048488.01.T01
Gene Sequence

>MsG0080048488.01.T01

ATGACAGTTTTGGAGGGGGAGGCAGTAACCTTACTCGATTCCATTCACTTTGCTGATGTTAACGGATGGGACCGGGTTGTCTTCGAGTCCGACTCAGCTGTTAACGGATGGGACCGGGTTGTCTTCGAGTCCGACTCAGCTACTGTAGTGCAAGCTCTATCGTCTCCAGGTCATGGTGATTCAGAATCTATGCTATTGTTTCTAGTATTATTTATCAAGTTATCTTTACATTCAAACTTCGAGGTGAAGTTTGTCAAGAGACAAACGAACATGATTGCTCATACTTTAACTAAGGCGATGGAGATGTCATCGCTTCTGACCGCATCGTCAAATGTTGTTCAGGTTAGCAGCAATCATATACCAGATGATATTGTCTTCTCTATTCTCTCTAAACTTCCTTTTAAATCTTTGAAGCGTTTTGAATGTGTACGTAAACCTTGGTCCCTCTTATTTGACAACCCTTGTTTCATGACTATGTACCACAACTATCTTTTAACAAGACCATGTTCTTATTATGATGATACATCTCTTCTCCTACATCTTAGAGAAGATGATGACCCACAAGAGATACGCCAAATTTATTATTATTTGTATTCTCTTTCTGGTGAGAGGTTTGAGAATAGAGTCAAATTAGATTGGCCAAAGGCTTTGACCGAGGATGTCTATCGACTTCAAAAGGAACAGTGTGTCCGTCCTATAGTTTTGAGAAGACCACTGGTACCAGGATGGTTTGTTCCACATGTTCATCCAGATGAGGAGGATGATGACGACGACGGACCATTTCAAGAGGATGATAATGGTTTTGAAATTTTACATCCCCTTAGTTTTAATGGTATTCTTTGTCTAAAAGCTGAATTCTACGGCGAAACGAGAGTTGTATTGTGGAATCCAACTACCAACGAATTCAAACTCATTCCTTTGCCTGAGAATAATCCTTCTTGGTATGTTTCGACCGATCATTATCAAATCGGTTATGATCATGTTAAAGATGATTATAAGATGATTGGCTACACAAAATATTCTCCAAAATTTAACCCTAATCGTGTGCCATCTGATCAATTTTGGGAGATCTATAGCCTACACAGTAACTCTTGGAAGAAAATTAATGTCGACATGACTCCTTCTTTTTCGATTCGTAAACGAGTGTACTTGAATGGAGTGTCTCATTGGTGGGATAAAACAGAAACAAATACGTATTTGGTGTCGTTTGACTTCTGCAAGGAATCTTTTATTACAACACCCATACCCTCTTATGTAGATGACAGTTTGGATTTTAACTTGGTCCAGAGACACTTGATGTTATTAAACGGATCTGTTGCTTTTATGTTACATTATACAGAGACATCAACAATTTACGTTTCAGTTTTGGGTGAACTCGGTGTAAAGGAATCATGGACTAAGCACTTCGTTGTTGGTCCCTTACCTTGCCTCGATCATCTTATTGGAGCTGGGAAGAAGAGCAATATACTCTTCAGAAAAAAAGACGGTGAACTAGCTTGGTTTGATTTAAGTACCGGGATGATCGATGAGATTGGTGTCACAACAGAAAGATTCTATTGCAAGATATTATTCCACAAAGAAAGCCTTCTTCCAATTGGAGGAATATATACAAACTTTTCTTCTTGTTTTCACCCACAATATATATGA

Protein sequence

>MsG0080048488.01.T01

MTVLEGEAVTLLDSIHFADVNGWDRVVFESDSAVNGWDRVVFESDSATVVQALSSPGHGDSESMLLFLVLFIKLSLHSNFEVKFVKRQTNMIAHTLTKAMEMSSLLTASSNVVQVSSNHIPDDIVFSILSKLPFKSLKRFECVRKPWSLLFDNPCFMTMYHNYLLTRPCSYYDDTSLLLHLREDDDPQEIRQIYYYLYSLSGERFENRVKLDWPKALTEDVYRLQKEQCVRPIVLRRPLVPGWFVPHVHPDEEDDDDDGPFQEDDNGFEILHPLSFNGILCLKAEFYGETRVVLWNPTTNEFKLIPLPENNPSWYVSTDHYQIGYDHVKDDYKMIGYTKYSPKFNPNRVPSDQFWEIYSLHSNSWKKINVDMTPSFSIRKRVYLNGVSHWWDKTETNTYLVSFDFCKESFITTPIPSYVDDSLDFNLVQRHLMLLNGSVAFMLHYTETSTIYVSVLGELGVKESWTKHFVVGPLPCLDHLIGAGKKSNILFRKKDGELAWFDLSTGMIDEIGVTTERFYCKILFHKESLLPIGGIYTNFSSCFHPQYI*