Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180002280.01.T05 | XP_013449046.1 | 93 | 100 | 7 | 0 | 1 | 100 | 46 | 145 | 6.06E-56 | 180 |
MsG0180002280.01.T01 | XP_013449046.1 | 90.58 | 138 | 11 | 1 | 2 | 139 | 10 | 145 | 5.52E-81 | 245 |
MsG0180002280.01.T03 | XP_013449046.1 | 92.969 | 128 | 9 | 0 | 1 | 128 | 18 | 145 | 1.02E-77 | 236 |
MsG0180002280.01.T02 | XP_013449046.1 | 91.111 | 135 | 10 | 1 | 1 | 135 | 13 | 145 | 4.03E-79 | 240 |
MsG0180002280.01.T04 | XP_013449046.1 | 92.742 | 124 | 9 | 0 | 1 | 124 | 22 | 145 | 9.22E-75 | 228 |
MsG0180002280.01.T06 | XP_013449046.1 | 93.75 | 48 | 3 | 0 | 1 | 48 | 98 | 145 | 3.18E-21 | 89.7 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180002280.01.T01 | Q39065 | 47.5 | 120 | 56 | 3 | 19 | 134 | 45 | 161 | 1.11E-29 | 108 |
MsG0180002280.01.T02 | Q39065 | 47.5 | 120 | 56 | 3 | 15 | 130 | 45 | 161 | 1.28E-29 | 108 |
MsG0180002280.01.T03 | Q39065 | 47.5 | 120 | 56 | 3 | 8 | 123 | 45 | 161 | 1.14E-29 | 108 |
MsG0180002280.01.T04 | Q39065 | 47.5 | 120 | 56 | 3 | 4 | 119 | 45 | 161 | 1.22E-29 | 107 |
MsG0180002280.01.T05 | Q39065 | 43.434 | 99 | 49 | 3 | 1 | 95 | 66 | 161 | 2.02E-17 | 75.5 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180002280.01.T01 | I3T3C3 | 90.580 | 138 | 11 | 1 | 2 | 139 | 10 | 145 | 2.64e-81 | 245 |
MsG0180002280.01.T02 | I3T3C3 | 91.111 | 135 | 10 | 1 | 1 | 135 | 13 | 145 | 1.93e-79 | 240 |
MsG0180002280.01.T03 | I3T3C3 | 92.969 | 128 | 9 | 0 | 1 | 128 | 18 | 145 | 4.90e-78 | 236 |
MsG0180002280.01.T04 | I3T3C3 | 92.742 | 124 | 9 | 0 | 1 | 124 | 22 | 145 | 4.41e-75 | 228 |
MsG0180002280.01.T06 | I3T3C3 | 93.750 | 48 | 3 | 0 | 1 | 48 | 98 | 145 | 1.52e-21 | 89.7 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180002280.01 | MsG0380017810.01 | 0.805700 | 1.176166e-49 | 6.264981e-47 |
MsG0180002280.01 | MsG0480019304.01 | 0.803585 | 3.250114e-49 | 1.639520e-46 |
MsG0180002280.01 | MsG0780038949.01 | 0.968757 | 3.913502e-129 | 3.359225e-123 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180002280.01.T05 | MTR_7g066070 | 93.000 | 100 | 7 | 0 | 1 | 100 | 46 | 145 | 7.34e-60 | 180 |
MsG0180002280.01.T05 | MTR_4g019870 | 61.616 | 99 | 38 | 0 | 1 | 99 | 37 | 135 | 9.25e-39 | 126 |
MsG0180002280.01.T05 | MTR_4g065660 | 44.444 | 90 | 49 | 1 | 2 | 91 | 57 | 145 | 1.40e-19 | 78.2 |
MsG0180002280.01.T05 | MTR_4g064963 | 48.750 | 80 | 41 | 0 | 1 | 80 | 67 | 146 | 1.05e-18 | 76.3 |
MsG0180002280.01.T05 | MTR_4g065123 | 45.679 | 81 | 42 | 2 | 2 | 82 | 53 | 131 | 1.58e-16 | 70.1 |
MsG0180002280.01.T05 | MTR_0027s0220 | 44.330 | 97 | 51 | 2 | 1 | 94 | 51 | 147 | 9.89e-16 | 68.2 |
MsG0180002280.01.T01 | MTR_7g066070 | 90.580 | 138 | 11 | 1 | 2 | 139 | 10 | 145 | 6.68e-85 | 245 |
MsG0180002280.01.T01 | MTR_4g019870 | 62.400 | 125 | 47 | 0 | 14 | 138 | 11 | 135 | 3.74e-55 | 169 |
MsG0180002280.01.T01 | MTR_4g064963 | 49.505 | 101 | 51 | 0 | 19 | 119 | 46 | 146 | 1.62e-30 | 108 |
MsG0180002280.01.T01 | MTR_4g065660 | 44.643 | 112 | 61 | 1 | 19 | 130 | 35 | 145 | 4.29e-30 | 106 |
MsG0180002280.01.T01 | MTR_4g065123 | 43.396 | 106 | 58 | 2 | 16 | 121 | 28 | 131 | 2.44e-26 | 96.7 |
MsG0180002280.01.T01 | MTR_0027s0220 | 44.628 | 121 | 64 | 2 | 16 | 133 | 27 | 147 | 4.73e-25 | 93.6 |
MsG0180002280.01.T01 | MTR_1g015000 | 32.847 | 137 | 67 | 3 | 16 | 127 | 2 | 138 | 4.90e-16 | 70.1 |
MsG0180002280.01.T01 | MTR_3g105330 | 29.710 | 138 | 68 | 4 | 16 | 130 | 2 | 133 | 1.75e-11 | 58.5 |
MsG0180002280.01.T03 | MTR_7g066070 | 92.969 | 128 | 9 | 0 | 1 | 128 | 18 | 145 | 1.24e-81 | 236 |
MsG0180002280.01.T03 | MTR_4g019870 | 62.400 | 125 | 47 | 0 | 3 | 127 | 11 | 135 | 3.03e-55 | 169 |
MsG0180002280.01.T03 | MTR_4g064963 | 49.505 | 101 | 51 | 0 | 8 | 108 | 46 | 146 | 1.33e-30 | 107 |
MsG0180002280.01.T03 | MTR_4g065660 | 44.643 | 112 | 61 | 1 | 8 | 119 | 35 | 145 | 5.10e-30 | 105 |
MsG0180002280.01.T03 | MTR_4g065123 | 43.810 | 105 | 57 | 2 | 6 | 110 | 29 | 131 | 1.63e-26 | 96.7 |
MsG0180002280.01.T03 | MTR_0027s0220 | 44.628 | 121 | 64 | 2 | 5 | 122 | 27 | 147 | 4.11e-25 | 93.2 |
MsG0180002280.01.T03 | MTR_1g015000 | 32.847 | 137 | 67 | 3 | 5 | 116 | 2 | 138 | 3.32e-16 | 70.1 |
MsG0180002280.01.T03 | MTR_3g105330 | 29.710 | 138 | 68 | 4 | 5 | 119 | 2 | 133 | 1.33e-11 | 58.2 |
MsG0180002280.01.T02 | MTR_7g066070 | 91.111 | 135 | 10 | 1 | 1 | 135 | 13 | 145 | 4.88e-83 | 240 |
MsG0180002280.01.T02 | MTR_4g019870 | 62.400 | 125 | 47 | 0 | 10 | 134 | 11 | 135 | 3.03e-55 | 169 |
MsG0180002280.01.T02 | MTR_4g064963 | 49.505 | 101 | 51 | 0 | 15 | 115 | 46 | 146 | 1.60e-30 | 107 |
MsG0180002280.01.T02 | MTR_4g065660 | 44.643 | 112 | 61 | 1 | 15 | 126 | 35 | 145 | 4.73e-30 | 106 |
MsG0180002280.01.T02 | MTR_4g065123 | 43.810 | 105 | 57 | 2 | 13 | 117 | 29 | 131 | 1.97e-26 | 96.7 |
MsG0180002280.01.T02 | MTR_0027s0220 | 44.628 | 121 | 64 | 2 | 12 | 129 | 27 | 147 | 4.22e-25 | 93.6 |
MsG0180002280.01.T02 | MTR_1g015000 | 32.847 | 137 | 67 | 3 | 12 | 123 | 2 | 138 | 4.35e-16 | 70.1 |
MsG0180002280.01.T02 | MTR_3g105330 | 29.710 | 138 | 68 | 4 | 12 | 126 | 2 | 133 | 1.64e-11 | 58.2 |
MsG0180002280.01.T04 | MTR_7g066070 | 92.742 | 124 | 9 | 0 | 1 | 124 | 22 | 145 | 1.12e-78 | 228 |
MsG0180002280.01.T04 | MTR_4g019870 | 62.602 | 123 | 46 | 0 | 1 | 123 | 13 | 135 | 1.59e-54 | 167 |
MsG0180002280.01.T04 | MTR_4g064963 | 49.505 | 101 | 51 | 0 | 4 | 104 | 46 | 146 | 9.74e-31 | 107 |
MsG0180002280.01.T04 | MTR_4g065660 | 44.643 | 112 | 61 | 1 | 4 | 115 | 35 | 145 | 5.36e-30 | 105 |
MsG0180002280.01.T04 | MTR_4g065123 | 43.810 | 105 | 57 | 2 | 2 | 106 | 29 | 131 | 1.27e-26 | 96.7 |
MsG0180002280.01.T04 | MTR_0027s0220 | 44.628 | 121 | 64 | 2 | 1 | 118 | 27 | 147 | 3.94e-25 | 93.2 |
MsG0180002280.01.T04 | MTR_1g015000 | 32.847 | 137 | 67 | 3 | 1 | 112 | 2 | 138 | 2.77e-16 | 70.5 |
MsG0180002280.01.T04 | MTR_3g105330 | 29.710 | 138 | 68 | 4 | 1 | 115 | 2 | 133 | 1.09e-11 | 58.5 |
MsG0180002280.01.T06 | MTR_7g066070 | 93.750 | 48 | 3 | 0 | 1 | 48 | 98 | 145 | 3.85e-25 | 89.7 |
MsG0180002280.01.T06 | MTR_4g019870 | 60.870 | 46 | 18 | 0 | 1 | 46 | 89 | 134 | 1.33e-14 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180002280.01.T05 | AT5G59030 | 43.434 | 99 | 49 | 3 | 1 | 95 | 66 | 161 | 2.06e-18 | 75.5 |
MsG0180002280.01.T05 | AT2G37925 | 48.235 | 85 | 41 | 1 | 1 | 82 | 54 | 138 | 3.19e-17 | 72.0 |
MsG0180002280.01.T05 | AT3G46900 | 39.175 | 97 | 57 | 2 | 1 | 96 | 54 | 149 | 3.74e-17 | 72.0 |
MsG0180002280.01.T05 | AT2G26975 | 39.130 | 92 | 55 | 1 | 1 | 91 | 49 | 140 | 1.52e-14 | 65.1 |
MsG0180002280.01.T05 | AT5G59040 | 39.560 | 91 | 55 | 0 | 1 | 91 | 54 | 144 | 2.11e-14 | 64.7 |
MsG0180002280.01.T01 | AT2G26975 | 46.094 | 128 | 66 | 3 | 5 | 130 | 14 | 140 | 3.75e-31 | 108 |
MsG0180002280.01.T01 | AT5G59030 | 47.500 | 120 | 56 | 3 | 19 | 134 | 45 | 161 | 1.13e-30 | 108 |
MsG0180002280.01.T01 | AT3G46900 | 44.444 | 117 | 63 | 2 | 20 | 135 | 34 | 149 | 3.02e-29 | 104 |
MsG0180002280.01.T01 | AT2G37925 | 49.541 | 109 | 52 | 1 | 16 | 121 | 30 | 138 | 5.93e-29 | 103 |
MsG0180002280.01.T01 | AT5G59040 | 43.478 | 115 | 65 | 0 | 16 | 130 | 30 | 144 | 6.36e-27 | 98.6 |
MsG0180002280.01.T01 | AT5G20650 | 34.286 | 140 | 67 | 4 | 16 | 130 | 2 | 141 | 4.22e-13 | 62.8 |
MsG0180002280.01.T03 | AT5G59030 | 47.500 | 120 | 56 | 3 | 8 | 123 | 45 | 161 | 1.16e-30 | 108 |
MsG0180002280.01.T03 | AT2G26975 | 45.833 | 120 | 63 | 2 | 1 | 119 | 22 | 140 | 7.06e-30 | 105 |
MsG0180002280.01.T03 | AT3G46900 | 44.444 | 117 | 63 | 2 | 9 | 124 | 34 | 149 | 2.51e-29 | 104 |
MsG0180002280.01.T03 | AT2G37925 | 49.541 | 109 | 52 | 1 | 5 | 110 | 30 | 138 | 5.88e-29 | 103 |
MsG0180002280.01.T03 | AT5G59040 | 43.478 | 115 | 65 | 0 | 5 | 119 | 30 | 144 | 4.48e-27 | 98.6 |
MsG0180002280.01.T03 | AT5G20650 | 34.286 | 140 | 67 | 4 | 5 | 119 | 2 | 141 | 2.73e-13 | 62.8 |
MsG0180002280.01.T02 | AT2G26975 | 46.094 | 128 | 66 | 3 | 1 | 126 | 14 | 140 | 3.51e-31 | 108 |
MsG0180002280.01.T02 | AT5G59030 | 47.500 | 120 | 56 | 3 | 15 | 130 | 45 | 161 | 1.31e-30 | 108 |
MsG0180002280.01.T02 | AT3G46900 | 44.444 | 117 | 63 | 2 | 16 | 131 | 34 | 149 | 2.89e-29 | 104 |
MsG0180002280.01.T02 | AT2G37925 | 49.541 | 109 | 52 | 1 | 12 | 117 | 30 | 138 | 5.75e-29 | 103 |
MsG0180002280.01.T02 | AT5G59040 | 43.478 | 115 | 65 | 0 | 12 | 126 | 30 | 144 | 5.25e-27 | 98.6 |
MsG0180002280.01.T02 | AT5G20650 | 34.286 | 140 | 67 | 4 | 12 | 126 | 2 | 141 | 3.50e-13 | 62.8 |
MsG0180002280.01.T04 | AT5G59030 | 47.500 | 120 | 56 | 3 | 4 | 119 | 45 | 161 | 1.25e-30 | 107 |
MsG0180002280.01.T04 | AT2G26975 | 44.828 | 116 | 63 | 1 | 1 | 115 | 25 | 140 | 1.44e-29 | 104 |
MsG0180002280.01.T04 | AT3G46900 | 44.444 | 117 | 63 | 2 | 5 | 120 | 34 | 149 | 2.61e-29 | 104 |
MsG0180002280.01.T04 | AT2G37925 | 49.541 | 109 | 52 | 1 | 1 | 106 | 30 | 138 | 7.29e-29 | 102 |
MsG0180002280.01.T04 | AT5G59040 | 43.478 | 115 | 65 | 0 | 1 | 115 | 30 | 144 | 4.38e-27 | 98.2 |
MsG0180002280.01.T04 | AT5G20650 | 34.286 | 140 | 67 | 4 | 1 | 115 | 2 | 141 | 2.45e-13 | 62.8 |
Find 31 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCTGTTCTTGGTCACTCAT+TGG | 0.291215 | 1:-36176911 | MsG0180002280.01.T01:CDS |
GTTTGTGTTCTTTCTAGCTT+TGG | 0.312506 | 1:-36177088 | MsG0180002280.01.T01:CDS |
ATCTTCATAGCTGCTGTTCT+TGG | 0.319054 | 1:-36176922 | MsG0180002280.01.T01:CDS |
CATGCAAATGAGTTTCTATT+GGG | 0.329393 | 1:-36177181 | MsG0180002280.01.T01:CDS |
ACATGCAAATGAGTTTCTAT+TGG | 0.341262 | 1:-36177182 | MsG0180002280.01.T01:CDS |
GCTGTTCTTGGTCACTCATT+GGG | 0.349929 | 1:-36176910 | MsG0180002280.01.T01:CDS |
TACATTCCAAGGCTGTTATT+AGG | 0.394707 | 1:+36177126 | None:intergenic |
TATCATGTTGGTTGTGCCAT+TGG | 0.436448 | 1:+36177209 | None:intergenic |
GCTGTTATGTCCTTCAATGT+TGG | 0.463100 | 1:-36176946 | MsG0180002280.01.T01:CDS |
AGTTATTATGGACATGCCTA+TGG | 0.477421 | 1:-36177232 | None:intergenic |
GGTGTTTACTTCTTTCGCAT+CGG | 0.490890 | 1:-36176991 | MsG0180002280.01.T01:CDS |
AAGGGAGGATTGATTCAGTC+TGG | 0.500278 | 1:-36177012 | MsG0180002280.01.T01:CDS |
CTTTCTAGCTTTGGCTGCTG+AGG | 0.501114 | 1:-36177079 | MsG0180002280.01.T01:CDS |
TTGCATGTTCATTATCATGT+TGG | 0.501352 | 1:+36177197 | None:intergenic |
TATGAAGATTCCAACATTGA+AGG | 0.512881 | 1:+36176936 | None:intergenic |
TTGGTTGTGCCATTGGCCAT+AGG | 0.526593 | 1:+36177216 | None:intergenic |
GGATGGCCTAATAACAGCCT+TGG | 0.528595 | 1:-36177132 | MsG0180002280.01.T01:CDS |
TAGCTAAGATGTACATTCCA+AGG | 0.545497 | 1:+36177115 | None:intergenic |
AACCAACCACCGATCATACG+TGG | 0.555467 | 1:-36177048 | MsG0180002280.01.T01:CDS |
ACGTGGGACTAATCCTCTCA+AGG | 0.562299 | 1:-36177031 | MsG0180002280.01.T01:CDS |
TGCTATTGCTGTCGCAAATG+CGG | 0.571863 | 1:-36176866 | MsG0180002280.01.T01:CDS |
TGAATCAATCCTCCCTTGAG+AGG | 0.579990 | 1:+36177018 | None:intergenic |
GGATTAGTCCCACGTATGAT+CGG | 0.582587 | 1:+36177039 | None:intergenic |
ATGGACATGCCTATGGCCAA+TGG | 0.590004 | 1:-36177225 | MsG0180002280.01.T01:CDS |
TCCCACGTATGATCGGTGGT+TGG | 0.602876 | 1:+36177046 | None:intergenic |
CGTGGGACTAATCCTCTCAA+GGG | 0.604812 | 1:-36177030 | MsG0180002280.01.T01:CDS |
CCATCCAGAGAAAAGAACTA+CGG | 0.626291 | 1:+36177149 | None:intergenic |
ATGCAAATGAGTTTCTATTG+GGG | 0.676613 | 1:-36177180 | MsG0180002280.01.T01:CDS |
GGGACTAATCCTCTCAAGGG+AGG | 0.683394 | 1:-36177027 | MsG0180002280.01.T01:CDS |
TTAGTCCCACGTATGATCGG+TGG | 0.684021 | 1:+36177042 | None:intergenic |
ACCAACCACCGATCATACGT+GGG | 0.691190 | 1:-36177047 | MsG0180002280.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TCAAATTTTAAGTGTAACTG+AGG | + | Chr1:36177228-36177247 | None:intergenic | 25.0% |
ACATGCAAATGAGTTTCTAT+TGG | - | Chr1:36176871-36176890 | MsG0180002280.01.T01:CDS | 30.0% | |
ATGCAAATGAGTTTCTATTG+GGG | - | Chr1:36176873-36176892 | MsG0180002280.01.T01:CDS | 30.0% | |
CATGCAAATGAGTTTCTATT+GGG | - | Chr1:36176872-36176891 | MsG0180002280.01.T01:CDS | 30.0% | |
TATGAAGATTCCAACATTGA+AGG | + | Chr1:36177120-36177139 | None:intergenic | 30.0% | |
TTGCATGTTCATTATCATGT+TGG | + | Chr1:36176859-36176878 | None:intergenic | 30.0% | |
!! | AATTTTAAGTGTAACTGAGG+AGG | + | Chr1:36177225-36177244 | None:intergenic | 30.0% |
TACATTCCAAGGCTGTTATT+AGG | + | Chr1:36176930-36176949 | None:intergenic | 35.0% | |
TAGCTAAGATGTACATTCCA+AGG | + | Chr1:36176941-36176960 | None:intergenic | 35.0% | |
!! | GTTTGTGTTCTTTCTAGCTT+TGG | - | Chr1:36176965-36176984 | MsG0180002280.01.T01:CDS | 35.0% |
ATCTTCATAGCTGCTGTTCT+TGG | - | Chr1:36177131-36177150 | MsG0180002280.01.T01:CDS | 40.0% | |
CCATCCAGAGAAAAGAACTA+CGG | + | Chr1:36176907-36176926 | None:intergenic | 40.0% | |
GCTGTTATGTCCTTCAATGT+TGG | - | Chr1:36177107-36177126 | MsG0180002280.01.T01:CDS | 40.0% | |
GGTGTTTACTTCTTTCGCAT+CGG | - | Chr1:36177062-36177081 | MsG0180002280.01.T01:CDS | 40.0% | |
! | TATCATGTTGGTTGTGCCAT+TGG | + | Chr1:36176847-36176866 | None:intergenic | 40.0% |
GCTGTTCTTGGTCACTCATT+GGG | - | Chr1:36177143-36177162 | MsG0180002280.01.T01:CDS | 45.0% | |
TGAATCAATCCTCCCTTGAG+AGG | + | Chr1:36177038-36177057 | None:intergenic | 45.0% | |
TGCTATTGCTGTCGCAAATG+CGG | - | Chr1:36177187-36177206 | MsG0180002280.01.T01:CDS | 45.0% | |
TGCTGTTCTTGGTCACTCAT+TGG | - | Chr1:36177142-36177161 | MsG0180002280.01.T01:CDS | 45.0% | |
! | AACGCCGTAGTTCTTTTCTC+TGG | - | Chr1:36176900-36176919 | MsG0180002280.01.T01:CDS | 45.0% |
! | AAGGGAGGATTGATTCAGTC+TGG | - | Chr1:36177041-36177060 | MsG0180002280.01.T01:CDS | 45.0% |
! | CCGTAGTTCTTTTCTCTGGA+TGG | - | Chr1:36176904-36176923 | MsG0180002280.01.T01:CDS | 45.0% |
!! | GGATTAGTCCCACGTATGAT+CGG | + | Chr1:36177017-36177036 | None:intergenic | 45.0% |
AACCAACCACCGATCATACG+TGG | - | Chr1:36177005-36177024 | MsG0180002280.01.T01:CDS | 50.0% | |
ACCAACCACCGATCATACGT+GGG | - | Chr1:36177006-36177025 | MsG0180002280.01.T01:CDS | 50.0% | |
ACGTGGGACTAATCCTCTCA+AGG | - | Chr1:36177022-36177041 | MsG0180002280.01.T01:CDS | 50.0% | |
ATGGACATGCCTATGGCCAA+TGG | - | Chr1:36176828-36176847 | MsG0180002280.01.T01:CDS | 50.0% | |
CGTGGGACTAATCCTCTCAA+GGG | - | Chr1:36177023-36177042 | MsG0180002280.01.T01:CDS | 50.0% | |
GGATGGCCTAATAACAGCCT+TGG | - | Chr1:36176921-36176940 | MsG0180002280.01.T01:CDS | 50.0% | |
TTAGTCCCACGTATGATCGG+TGG | + | Chr1:36177014-36177033 | None:intergenic | 50.0% | |
! | TTGGTTGTGCCATTGGCCAT+AGG | + | Chr1:36176840-36176859 | None:intergenic | 50.0% |
!! | CTTTCTAGCTTTGGCTGCTG+AGG | - | Chr1:36176974-36176993 | MsG0180002280.01.T01:CDS | 50.0% |
GGGACTAATCCTCTCAAGGG+AGG | - | Chr1:36177026-36177045 | MsG0180002280.01.T01:CDS | 55.0% | |
TCCCACGTATGATCGGTGGT+TGG | + | Chr1:36177010-36177029 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 36176828 | 36177247 | 36176828 | ID=MsG0180002280.01;Name=MsG0180002280.01 |
Chr1 | mRNA | 36176828 | 36177247 | 36176828 | ID=MsG0180002280.01.T01;Parent=MsG0180002280.01;Name=MsG0180002280.01.T01;_AED=0.03;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|139 |
Chr1 | exon | 36176828 | 36177247 | 36176828 | ID=MsG0180002280.01.T01:exon:6243;Parent=MsG0180002280.01.T01 |
Chr1 | CDS | 36176828 | 36177247 | 36176828 | ID=MsG0180002280.01.T01:cds;Parent=MsG0180002280.01.T01 |
Chr1 | mRNA | 36176828 | 36177235 | 36176828 | ID=MsG0180002280.01.T02;Parent=MsG0180002280.01;Name=MsG0180002280.01.T02;_AED=0.04;_eAED=0.04;_QI=0|-1|0|1|-1|0|1|0|135 |
Chr1 | exon | 36176828 | 36177235 | 36176828 | ID=MsG0180002280.01.T02:exon:6244;Parent=MsG0180002280.01.T02 |
Chr1 | CDS | 36176828 | 36177235 | 36176828 | ID=MsG0180002280.01.T02:cds;Parent=MsG0180002280.01.T02 |
Chr1 | mRNA | 36176828 | 36177214 | 36176828 | ID=MsG0180002280.01.T03;Parent=MsG0180002280.01;Name=MsG0180002280.01.T03;_AED=0.07;_eAED=0.07;_QI=0|-1|0|1|-1|0|1|0|128 |
Chr1 | exon | 36176828 | 36177214 | 36176828 | ID=MsG0180002280.01.T03:exon:6245;Parent=MsG0180002280.01.T03 |
Chr1 | CDS | 36176828 | 36177214 | 36176828 | ID=MsG0180002280.01.T03:cds;Parent=MsG0180002280.01.T03 |
Chr1 | mRNA | 36176828 | 36177202 | 36176828 | ID=MsG0180002280.01.T04;Parent=MsG0180002280.01;Name=MsG0180002280.01.T04;_AED=0.08;_eAED=0.08;_QI=0|-1|0|1|-1|0|1|0|124 |
Chr1 | exon | 36176828 | 36177202 | 36176828 | ID=MsG0180002280.01.T04:exon:6246;Parent=MsG0180002280.01.T04 |
Chr1 | CDS | 36176828 | 36177202 | 36176828 | ID=MsG0180002280.01.T04:cds;Parent=MsG0180002280.01.T04 |
Chr1 | mRNA | 36176828 | 36177130 | 36176828 | ID=MsG0180002280.01.T05;Parent=MsG0180002280.01;Name=MsG0180002280.01.T05;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|0|1|0|100 |
Chr1 | exon | 36176828 | 36177130 | 36176828 | ID=MsG0180002280.01.T05:exon:6247;Parent=MsG0180002280.01.T05 |
Chr1 | CDS | 36176828 | 36177130 | 36176828 | ID=MsG0180002280.01.T05:cds;Parent=MsG0180002280.01.T05 |
Chr1 | mRNA | 36176828 | 36176974 | 36176828 | ID=MsG0180002280.01.T06;Parent=MsG0180002280.01;Name=MsG0180002280.01.T06;_AED=0.35;_eAED=0.35;_QI=0|-1|0|1|-1|0|1|0|48 |
Chr1 | exon | 36176828 | 36176974 | 36176828 | ID=MsG0180002280.01.T06:exon:6248;Parent=MsG0180002280.01.T06 |
Chr1 | CDS | 36176828 | 36176974 | 36176828 | ID=MsG0180002280.01.T06:cds;Parent=MsG0180002280.01.T06 |
Gene Sequence |
Protein sequence |