AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480019304.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019304.01.T01 MTR_4g030040 98.035 509 10 0 21 529 1 509 0.0 1023
MsG0480019304.01.T01 MTR_4g030040 94.329 529 9 1 1 529 1 508 0.0 1011
MsG0480019304.01.T01 MTR_4g030210 83.532 504 81 2 23 525 7 509 0.0 848
MsG0480019304.01.T01 MTR_8g039190 69.745 509 147 3 23 525 1 508 0.0 723
MsG0480019304.01.T01 MTR_5g080050 67.906 511 156 3 23 525 1 511 0.0 687
MsG0480019304.01.T01 MTR_5g082760 65.134 522 166 4 19 525 1 521 0.0 661
MsG0480019304.01.T01 MTR_8g039070 62.745 510 149 5 19 525 1 472 0.0 626
MsG0480019304.01.T01 MTR_8g447340 44.747 514 272 5 26 528 9 521 9.88e-167 483
MsG0480019304.01.T01 MTR_2g081930 31.712 514 323 9 28 522 19 523 3.27e-80 260
MsG0480019304.01.T01 MTR_4g120720 38.538 301 145 7 98 392 2 268 1.61e-56 190
MsG0480019304.01.T01 MTR_2g081950 31.008 387 243 6 150 517 19 400 9.76e-47 168
MsG0480019304.01.T01 MTR_4g081490 29.199 387 261 6 150 528 66 447 1.48e-45 166
MsG0480019304.01.T01 MTR_2g081960 33.333 126 82 1 29 154 17 140 4.21e-20 87.4
MsG0480019304.01.T01 MTR_4g081480 31.250 128 80 3 27 150 21 144 4.26e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480019304.01.T01 AT1G16390 47.937 509 255 6 24 524 3 509 9.56e-176 506
MsG0480019304.01.T01 AT1G79360 46.731 520 258 7 24 528 3 518 2.63e-173 499
MsG0480019304.01.T01 AT1G16370 42.331 489 268 7 46 526 31 513 4.54e-137 407
MsG0480019304.01.T01 AT1G79410 43.416 486 266 6 46 526 26 507 1.38e-136 405
MsG0480019304.01.T01 AT1G73220 34.888 536 322 8 13 527 2 531 1.62e-105 327
MsG0480019304.01.T01 AT3G20660 28.435 524 351 10 15 528 8 517 1.86e-70 234
MsG0480019304.01.T01 AT3G51490 28.902 173 115 3 148 313 3 174 1.42e-12 70.9
MsG0480019304.01.T01 AT3G51490 28.902 173 115 3 148 313 53 224 1.58e-12 70.9
MsG0480019304.01.T01 AT3G51490 28.902 173 115 3 148 313 53 224 1.72e-12 70.5
MsG0480019304.01.T01 AT1G34580 24.057 424 267 18 141 525 37 444 1.57e-11 67.0
MsG0480019304.01.T01 AT1G34580 24.057 424 267 18 141 525 87 494 2.48e-11 66.6
MsG0480019304.01.T01 AT1G20840 26.415 159 106 2 162 313 68 222 7.13e-11 65.5
MsG0480019304.01.T01 AT1G20840 26.415 159 106 2 162 313 68 222 7.13e-11 65.5

Find 103 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATTGGAATGGTTTATTT+TGG 0.180720 4:-18207642 MsG0480019304.01.T01:CDS
CGTGGAAATCGGTGTATATT+TGG 0.206428 4:-18207941 MsG0480019304.01.T01:CDS
GAATTAGAATTAGTTGAAAT+TGG 0.208964 4:+18208611 None:intergenic
GAATATTTCTGCTTCACATT+AGG 0.262371 4:-18208008 MsG0480019304.01.T01:CDS
AATATTTCTGCTTCACATTA+GGG 0.272078 4:-18208007 MsG0480019304.01.T01:CDS
GAAAGGGGTTTAGGAAGATT+TGG 0.291856 4:-18208545 MsG0480019304.01.T01:CDS
CCTCCCAGCAGATATCAAAA+AGG 0.297351 4:+18207269 None:intergenic
TTGTGTGGCTACTTATTTCT+TGG 0.297902 4:-18207541 MsG0480019304.01.T01:CDS
GAAGCTATGGCAATGCTTAA+AGG 0.298486 4:-18207828 MsG0480019304.01.T01:CDS
CAAGAATCGATGGCTTTCTT+TGG 0.301329 4:+18207511 None:intergenic
ATGGTTCTTGGTATTGGAAT+TGG 0.308137 4:-18207657 MsG0480019304.01.T01:CDS
GCAAAATTCCTAAGTCTTCA+TGG 0.320997 4:-18208379 MsG0480019304.01.T01:CDS
CCGCAATCTTCGTTCTTCAT+TGG 0.331379 4:-18208278 MsG0480019304.01.T01:CDS
CGTCAATTGCAGAGTTGTTC+GGG 0.343455 4:-18207713 MsG0480019304.01.T01:CDS
GAAATGATGGAAAGGGGTTT+AGG 0.347800 4:-18208554 MsG0480019304.01.T01:CDS
GCCATCGATTCTTGTATTCT+CGG 0.352206 4:-18207502 MsG0480019304.01.T01:CDS
TGTTACATTACTCGGTTTGC+CGG 0.361066 4:-18207193 MsG0480019304.01.T01:CDS
CCTTTAGCCGTTGGAAACTT+AGG 0.365016 4:-18207615 MsG0480019304.01.T01:CDS
TGTGCTAGTAGCTTTGTAAC+AGG 0.368806 4:-18208305 MsG0480019304.01.T01:CDS
TGTATAATGTGTGTTATTGT+TGG 0.371116 4:-18207462 MsG0480019304.01.T01:CDS
GCGGTAATGGTTCTTGGTAT+TGG 0.379219 4:-18207663 MsG0480019304.01.T01:CDS
TCGTCAATTGCAGAGTTGTT+CGG 0.383274 4:-18207714 MsG0480019304.01.T01:CDS
TTCTCTCATGGCGGCTATAG+AGG 0.389503 4:-18209358 None:intergenic
TCCATCATTTCATCTGTTGA+AGG 0.402045 4:+18208566 None:intergenic
CAGAGTTGTTCGGGAGAAGT+TGG 0.405119 4:-18207704 MsG0480019304.01.T01:CDS
TAGATATAATTCGTGGAAAT+CGG 0.408726 4:-18207952 MsG0480019304.01.T01:CDS
ATATACCTCGGAAGAAGCTT+GGG 0.417250 4:+18209317 None:intergenic
GATTCGTACAATGCCATGTT+TGG 0.423157 4:+18208432 None:intergenic
ATGATTGAGTAAATAATTGC+AGG 0.429182 4:+18207909 None:intergenic
TTTCTTCTCTTGTTGATCCA+TGG 0.431898 4:+18207143 None:intergenic
AAAGCGAATGGTGGCGGTAA+TGG 0.437000 4:-18207676 MsG0480019304.01.T01:CDS
CCGAGTGGAGGTTCACTGTT+GGG 0.441877 4:-18208037 MsG0480019304.01.T01:CDS
ATGGTGGCGGTAATGGTTCT+TGG 0.443762 4:-18207669 MsG0480019304.01.T01:CDS
TATATACCTCGGAAGAAGCT+TGG 0.445381 4:+18209316 None:intergenic
AACAGATGAAATGATGGAAA+GGG 0.447149 4:-18208561 MsG0480019304.01.T01:CDS
ATCGGGACAACAAGGAATTA+AGG 0.453209 4:-18207439 MsG0480019304.01.T01:CDS
TTCCTAAGTCTTCATGGTCA+TGG 0.455731 4:-18208373 MsG0480019304.01.T01:CDS
TTTGGAATGCCTTTAGCCGT+TGG 0.456255 4:-18207624 MsG0480019304.01.T01:CDS
AGAGTTGTTCGGGAGAAGTT+GGG 0.457783 4:-18207703 MsG0480019304.01.T01:CDS
TTGTCTTGTGTTACATTACT+CGG 0.467042 4:-18207201 MsG0480019304.01.T01:CDS
TGTTGTGTTCAACGGTTTGA+TGG 0.467189 4:-18207574 MsG0480019304.01.T01:CDS
TATTTGGCTGTTGTGTTCAA+CGG 0.483478 4:-18207582 MsG0480019304.01.T01:CDS
TAATTCTAATTCTATTGAGC+AGG 0.490002 4:-18208600 MsG0480019304.01.T01:CDS
ATCTTAATAGATATAATTCG+TGG 0.492171 4:-18207959 MsG0480019304.01.T01:CDS
CTTGCATTAGAAGCCATCTC+GGG 0.492815 4:+18207862 None:intergenic
CTCGGAAGAAGCTTGGGGTA+TGG 0.496504 4:+18209323 None:intergenic
CTGCAATTGACGAGTAAAGC+TGG 0.497090 4:+18207724 None:intergenic
TAGAAGCCATCTCGGGGACT+CGG 0.499415 4:+18207869 None:intergenic
CCTTGCATTAGAAGCCATCT+CGG 0.501206 4:+18207861 None:intergenic
CCTAAGTTTCCAACGGCTAA+AGG 0.502513 4:+18207615 None:intergenic
GTAGTGTTTCTCACACTTGT+TGG 0.504323 4:+18207339 None:intergenic
ATGTGTGTTATTGTTGGATC+GGG 0.504656 4:-18207456 MsG0480019304.01.T01:CDS
ATAGCAATTAGAAATGGCAT+TGG 0.509273 4:-18208645 MsG0480019304.01.T01:intron
GAGAAACACTACAACATCAT+TGG 0.509406 4:-18207328 MsG0480019304.01.T01:CDS
TCCTTCAACAGATGAAATGA+TGG 0.510742 4:-18208567 MsG0480019304.01.T01:CDS
TTAGGGTATGTGTCATTGCC+TGG 0.518083 4:-18207990 MsG0480019304.01.T01:CDS
GGCTCTAAAGCGAATGGTGG+CGG 0.520323 4:-18207682 MsG0480019304.01.T01:CDS
TCTTGGTATTGGAATTGGAA+TGG 0.520997 4:-18207652 MsG0480019304.01.T01:CDS
GAAGCTTGGGGTATGGAAGA+AGG 0.522165 4:+18209330 None:intergenic
TCCTAAGTCTTCATGGTCAT+GGG 0.525136 4:-18208372 MsG0480019304.01.T01:CDS
GGGTTTAGGAAGATTTGGTT+GGG 0.532129 4:-18208540 MsG0480019304.01.T01:CDS
GGGGTTTAGGAAGATTTGGT+TGG 0.533651 4:-18208541 MsG0480019304.01.T01:CDS
CTAGAAGAAACGAACCGAAA+AGG 0.540466 4:+18208252 None:intergenic
AGCCCCGGTGAATAAACAAA+AGG 0.542980 4:-18207757 MsG0480019304.01.T01:CDS
AATGTGTGTTATTGTTGGAT+CGG 0.549320 4:-18207457 MsG0480019304.01.T01:CDS
CTTGTATTCTCGGTAGCTAG+TGG 0.549620 4:-18207492 MsG0480019304.01.T01:CDS
CAACAGATGAAATGATGGAA+AGG 0.550084 4:-18208562 MsG0480019304.01.T01:CDS
ACAAAACAGTGATATCTCAA+TGG 0.553373 4:-18208337 MsG0480019304.01.T01:CDS
ATGCCATGTTTGGTATTCGT+CGG 0.558939 4:+18208442 None:intergenic
GACAACAAGGAATTAAGGTC+GGG 0.563112 4:-18207434 MsG0480019304.01.T01:CDS
CTATTAAGATAAGCTATACC+AGG 0.565268 4:+18207972 None:intergenic
ATTAGCTCTTTCAGATACCA+TGG 0.565402 4:-18207160 MsG0480019304.01.T01:CDS
CTCGGTTTGCCGGAGTCAAG+AGG 0.567370 4:-18207183 MsG0480019304.01.T01:CDS
TCCCATGACCATGAAGACTT+AGG 0.573627 4:+18208371 None:intergenic
AGGACGACATCAAGAAGCTA+TGG 0.579332 4:-18207841 MsG0480019304.01.T01:CDS
AAGTCTTCATGGTCATGGGA+TGG 0.580758 4:-18208368 MsG0480019304.01.T01:CDS
ACTTTAGCTGATACATCACT+TGG 0.581500 4:-18208227 MsG0480019304.01.T01:CDS
AGTAAGTTTAATAGAAGCCC+CGG 0.581651 4:-18207772 MsG0480019304.01.T01:CDS
ACCGAGTGGAGGTTCACTGT+TGG 0.582904 4:-18208038 MsG0480019304.01.T01:CDS
AACAGAATAAATCCAAACAT+TGG 0.591278 4:+18208136 None:intergenic
GAATCTGATGCACATGTGGT+CGG 0.594235 4:+18208410 None:intergenic
ACAGATGAAATGATGGAAAG+GGG 0.595316 4:-18208560 MsG0480019304.01.T01:CDS
ATCGGTGTATATTTGGACAT+CGG 0.596172 4:-18207934 MsG0480019304.01.T01:CDS
TTGTTACCGAGTCCCCGAGA+TGG 0.599721 4:-18207875 MsG0480019304.01.T01:CDS
ACCGAGAATACAAGAATCGA+TGG 0.601771 4:+18207501 None:intergenic
GGACAACAAGGAATTAAGGT+CGG 0.602421 4:-18207435 MsG0480019304.01.T01:CDS
AGAGCTAATCCTCTTGACTC+CGG 0.602963 4:+18207174 None:intergenic
GATGGAAATACCGTCTTGTG+TGG 0.605544 4:-18207556 MsG0480019304.01.T01:CDS
GTCAAAACCTAAGTTTCCAA+CGG 0.615468 4:+18207608 None:intergenic
ATTGTTGGATCGGGACAACA+AGG 0.619158 4:-18207447 MsG0480019304.01.T01:CDS
CCGAGATGGCTTCTAATGCA+AGG 0.623082 4:-18207861 MsG0480019304.01.T01:CDS
AAATAAGTAGCCACACAAGA+CGG 0.630270 4:+18207546 None:intergenic
AAGTTGGGCTCTAAAGCGAA+TGG 0.635588 4:-18207688 MsG0480019304.01.T01:CDS
CATACCCCAAGCTTCTTCCG+AGG 0.637475 4:-18209322 MsG0480019304.01.T01:intron
ACACCGACGAATACCAAACA+TGG 0.647674 4:-18208445 MsG0480019304.01.T01:CDS
CCCAACAGTGAACCTCCACT+CGG 0.649161 4:+18208037 None:intergenic
TTGCATTAGAAGCCATCTCG+GGG 0.669568 4:+18207863 None:intergenic
CTGAGAAAGTTAGTACCGAG+TGG 0.671581 4:-18208052 MsG0480019304.01.T01:CDS
TTGGGCTCTAAAGCGAATGG+TGG 0.677343 4:-18207685 MsG0480019304.01.T01:CDS
TATACCTCGGAAGAAGCTTG+GGG 0.677450 4:+18209318 None:intergenic
GTTAGAATCTGATGCACATG+TGG 0.681692 4:+18208406 None:intergenic
AGAAAGTTAGTACCGAGTGG+AGG 0.706492 4:-18208049 MsG0480019304.01.T01:CDS
CCAATGAAGAACGAAGATTG+CGG 0.713248 4:+18208278 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAGATTAAATATAAATAAAT+AGG + Chr4:18207699-18207718 None:intergenic 10.0%
!! CCAAAATAATTATATAAAAC+TGG - Chr4:18207604-18207623 MsG0480019304.01.T01:CDS 15.0%
!!! ATTTTAATAGCAATTAGAAA+TGG - Chr4:18207825-18207844 MsG0480019304.01.T01:CDS 15.0%
!!! CCAGTTTTATATAATTATTT+TGG + Chr4:18207607-18207626 None:intergenic 15.0%
!!! GGTTTGTTTATATATAATTA+GGG + Chr4:18207361-18207380 None:intergenic 15.0%
!!! TGGTTTGTTTATATATAATT+AGG + Chr4:18207362-18207381 None:intergenic 15.0%
!! AAAACTAAAAAATTCAATCC+TGG + Chr4:18207662-18207681 None:intergenic 20.0%
!! ATCTTAATAGATATAATTCG+TGG - Chr4:18208517-18208536 MsG0480019304.01.T01:CDS 20.0%
!! GAATTAGAATTAGTTGAAAT+TGG + Chr4:18207868-18207887 None:intergenic 20.0%
!! TAATTAAGATGATAAAGTGA+CGG + Chr4:18207337-18207356 None:intergenic 20.0%
!! TGCTTTCAATTGAATAATAA+AGG + Chr4:18207765-18207784 None:intergenic 20.0%
!!! AAAAATGACATTTTCTCATA+CGG - Chr4:18209230-18209249 MsG0480019304.01.T01:intron 20.0%
!!! TCTGTTTTTAAATTCTTGAT+TGG - Chr4:18208357-18208376 MsG0480019304.01.T01:CDS 20.0%
! AACAGAATAAATCCAAACAT+TGG + Chr4:18208343-18208362 None:intergenic 25.0%
! AATAGTAATAGCAATAGCAT+AGG - Chr4:18207790-18207809 MsG0480019304.01.T01:CDS 25.0%
! ATCAAAGTCAAACAAAAACT+TGG + Chr4:18207500-18207519 None:intergenic 25.0%
! ATGATTGAGTAAATAATTGC+AGG + Chr4:18208570-18208589 None:intergenic 25.0%
! CAATTGAATAATAAAGGCAA+AGG + Chr4:18207759-18207778 None:intergenic 25.0%
! GTTTATGTTTGTATATACCT+CGG + Chr4:18207174-18207193 None:intergenic 25.0%
! TAATTCTAATTCTATTGAGC+AGG - Chr4:18207876-18207895 MsG0480019304.01.T01:CDS 25.0%
! TAGATATAATTCGTGGAAAT+CGG - Chr4:18208524-18208543 MsG0480019304.01.T01:CDS 25.0%
! TATAAACAAACCAAAAGTCT+TGG - Chr4:18207369-18207388 MsG0480019304.01.T01:CDS 25.0%
! TCACTACTATCAAAATCATT+TGG - Chr4:18207261-18207280 MsG0480019304.01.T01:CDS 25.0%
!! AATATTTCTGCTTCACATTA+GGG - Chr4:18208469-18208488 MsG0480019304.01.T01:CDS 25.0%
!! TGTATAATGTGTGTTATTGT+TGG - Chr4:18209014-18209033 MsG0480019304.01.T01:intron 25.0%
!!! CTTAGGTTTTGACATTTATT+TGG - Chr4:18208878-18208897 MsG0480019304.01.T01:intron 25.0%
ACAAAACAGTGATATCTCAA+TGG - Chr4:18208139-18208158 MsG0480019304.01.T01:CDS 30.0%
ATAGCAATTAGAAATGGCAT+TGG - Chr4:18207831-18207850 MsG0480019304.01.T01:CDS 30.0%
CTATTAAGATAAGCTATACC+AGG + Chr4:18208507-18208526 None:intergenic 30.0%
TTGTCTTGTGTTACATTACT+CGG - Chr4:18209275-18209294 MsG0480019304.01.T01:intron 30.0%
! AACAGATGAAATGATGGAAA+GGG - Chr4:18207915-18207934 MsG0480019304.01.T01:CDS 30.0%
! AATGTGTGTTATTGTTGGAT+CGG - Chr4:18209019-18209038 MsG0480019304.01.T01:intron 30.0%
! GAATATTTCTGCTTCACATT+AGG - Chr4:18208468-18208487 MsG0480019304.01.T01:CDS 30.0%
! GGAATTGGAATGGTTTATTT+TGG - Chr4:18208834-18208853 MsG0480019304.01.T01:intron 30.0%
! TTGTTTTCTCTACCAATGTT+TGG - Chr4:18208328-18208347 MsG0480019304.01.T01:CDS 30.0%
AAATAAGTAGCCACACAAGA+CGG + Chr4:18208933-18208952 None:intergenic 35.0%
ACTTTAGCTGATACATCACT+TGG - Chr4:18208249-18208268 MsG0480019304.01.T01:CDS 35.0%
AGTAAGTTTAATAGAAGCCC+CGG - Chr4:18208704-18208723 MsG0480019304.01.T01:intron 35.0%
ATCGGTGTATATTTGGACAT+CGG - Chr4:18208542-18208561 MsG0480019304.01.T01:CDS 35.0%
GAGAAACACTACAACATCAT+TGG - Chr4:18209148-18209167 MsG0480019304.01.T01:intron 35.0%
GCAAAATTCCTAAGTCTTCA+TGG - Chr4:18208097-18208116 MsG0480019304.01.T01:CDS 35.0%
GTCAAAACCTAAGTTTCCAA+CGG + Chr4:18208871-18208890 None:intergenic 35.0%
TATTTGGCTGTTGTGTTCAA+CGG - Chr4:18208894-18208913 MsG0480019304.01.T01:intron 35.0%
TCCATCATTTCATCTGTTGA+AGG + Chr4:18207913-18207932 None:intergenic 35.0%
TCCTTCAACAGATGAAATGA+TGG - Chr4:18207909-18207928 MsG0480019304.01.T01:CDS 35.0%
TTTCTTCTCTTGTTGATCCA+TGG + Chr4:18209336-18209355 None:intergenic 35.0%
! ACAGATGAAATGATGGAAAG+GGG - Chr4:18207916-18207935 MsG0480019304.01.T01:CDS 35.0%
! ATGGTTCTTGGTATTGGAAT+TGG - Chr4:18208819-18208838 MsG0480019304.01.T01:intron 35.0%
! ATGTGTGTTATTGTTGGATC+GGG - Chr4:18209020-18209039 MsG0480019304.01.T01:intron 35.0%
! ATTAGCTCTTTCAGATACCA+TGG - Chr4:18209316-18209335 MsG0480019304.01.T01:intron 35.0%
! CAACAGATGAAATGATGGAA+AGG - Chr4:18207914-18207933 MsG0480019304.01.T01:CDS 35.0%
! GTGAGACAAGCTATTGTTTT+TGG - Chr4:18209170-18209189 MsG0480019304.01.T01:intron 35.0%
! TCTTGGTATTGGAATTGGAA+TGG - Chr4:18208824-18208843 MsG0480019304.01.T01:intron 35.0%
! TTGTGTGGCTACTTATTTCT+TGG - Chr4:18208935-18208954 MsG0480019304.01.T01:intron 35.0%
!! AAGCCTTTTGTTTATTCACC+GGG + Chr4:18208725-18208744 None:intergenic 35.0%
!! GAAGCCTTTTGTTTATTCAC+CGG + Chr4:18208726-18208745 None:intergenic 35.0%
!! TTCTTCATTGGTTGCCTTTT+CGG - Chr4:18208210-18208229 MsG0480019304.01.T01:CDS 35.0%
AATAACAACGTGCACAAGCA+TGG + Chr4:18207566-18207585 None:intergenic 40.0%
ACCGAGAATACAAGAATCGA+TGG + Chr4:18208978-18208997 None:intergenic 40.0%
ATATACCTCGGAAGAAGCTT+GGG + Chr4:18207162-18207181 None:intergenic 40.0%
ATCGGGACAACAAGGAATTA+AGG - Chr4:18209037-18209056 MsG0480019304.01.T01:intron 40.0%
ATGCCATGTTTGGTATTCGT+CGG + Chr4:18208037-18208056 None:intergenic 40.0%
CAAGAATCGATGGCTTTCTT+TGG + Chr4:18208968-18208987 None:intergenic 40.0%
CCAATGAAGAACGAAGATTG+CGG + Chr4:18208201-18208220 None:intergenic 40.0%
CGTGGAAATCGGTGTATATT+TGG - Chr4:18208535-18208554 MsG0480019304.01.T01:CDS 40.0%
CTAGAAGAAACGAACCGAAA+AGG + Chr4:18208227-18208246 None:intergenic 40.0%
CTCCCAGCAGATATCAAAAA+GGG + Chr4:18209209-18209228 None:intergenic 40.0%
GAAAGGGGTTTAGGAAGATT+TGG - Chr4:18207931-18207950 MsG0480019304.01.T01:CDS 40.0%
GAAGCTATGGCAATGCTTAA+AGG - Chr4:18208648-18208667 MsG0480019304.01.T01:intron 40.0%
GACAACAAGGAATTAAGGTC+GGG - Chr4:18209042-18209061 MsG0480019304.01.T01:intron 40.0%
GATTCGTACAATGCCATGTT+TGG + Chr4:18208047-18208066 None:intergenic 40.0%
GGACAACAAGGAATTAAGGT+CGG - Chr4:18209041-18209060 MsG0480019304.01.T01:intron 40.0%
GTAGTGTTTCTCACACTTGT+TGG + Chr4:18209140-18209159 None:intergenic 40.0%
GTTAGAATCTGATGCACATG+TGG + Chr4:18208073-18208092 None:intergenic 40.0%
TATATACCTCGGAAGAAGCT+TGG + Chr4:18207163-18207182 None:intergenic 40.0%
TCCCAGCAGATATCAAAAAG+GGG + Chr4:18209208-18209227 None:intergenic 40.0%
TCCTAAGTCTTCATGGTCAT+GGG - Chr4:18208104-18208123 MsG0480019304.01.T01:CDS 40.0%
TCGTCAATTGCAGAGTTGTT+CGG - Chr4:18208762-18208781 MsG0480019304.01.T01:intron 40.0%
TGTTGTGTTCAACGGTTTGA+TGG - Chr4:18208902-18208921 MsG0480019304.01.T01:intron 40.0%
TTCAATCCTGGCAACTACTA+TGG + Chr4:18207650-18207669 None:intergenic 40.0%
TTCCTAAGTCTTCATGGTCA+TGG - Chr4:18208103-18208122 MsG0480019304.01.T01:CDS 40.0%
! ATGCAACTAGCCAAGACTTT+TGG + Chr4:18207382-18207401 None:intergenic 40.0%
! ATTTTCTCATACGGCGTGTT+TGG - Chr4:18209239-18209258 MsG0480019304.01.T01:intron 40.0%
! GAAATGATGGAAAGGGGTTT+AGG - Chr4:18207922-18207941 MsG0480019304.01.T01:CDS 40.0%
! GATATCACTGTTTTGTGTGC+TGG + Chr4:18208135-18208154 None:intergenic 40.0%
! GGGTTTAGGAAGATTTGGTT+GGG - Chr4:18207936-18207955 MsG0480019304.01.T01:CDS 40.0%
! TGTTACATTACTCGGTTTGC+CGG - Chr4:18209283-18209302 MsG0480019304.01.T01:intron 40.0%
!! AGCCTTTTGTTTATTCACCG+GGG + Chr4:18208724-18208743 None:intergenic 40.0%
!! GCCATCGATTCTTGTATTCT+CGG - Chr4:18208974-18208993 MsG0480019304.01.T01:intron 40.0%
!! TGTGCTAGTAGCTTTGTAAC+AGG - Chr4:18208171-18208190 MsG0480019304.01.T01:CDS 40.0%
AAGTCTTCATGGTCATGGGA+TGG - Chr4:18208108-18208127 MsG0480019304.01.T01:CDS 45.0%
ACACCGACGAATACCAAACA+TGG - Chr4:18208031-18208050 MsG0480019304.01.T01:CDS 45.0%
AGAGCTAATCCTCTTGACTC+CGG + Chr4:18209305-18209324 None:intergenic 45.0%
AGAGTTGTTCGGGAGAAGTT+GGG - Chr4:18208773-18208792 MsG0480019304.01.T01:intron 45.0%
AGCCCCGGTGAATAAACAAA+AGG - Chr4:18208719-18208738 MsG0480019304.01.T01:intron 45.0%
AGGACGACATCAAGAAGCTA+TGG - Chr4:18208635-18208654 MsG0480019304.01.T01:CDS 45.0%
ATTGTTGGATCGGGACAACA+AGG - Chr4:18209029-18209048 MsG0480019304.01.T01:intron 45.0%
CCGCAATCTTCGTTCTTCAT+TGG - Chr4:18208198-18208217 MsG0480019304.01.T01:CDS 45.0%
CCTAAGTTTCCAACGGCTAA+AGG + Chr4:18208864-18208883 None:intergenic 45.0%
CCTCCCAGCAGATATCAAAA+AGG + Chr4:18209210-18209229 None:intergenic 45.0%
CCTTGCATTAGAAGCCATCT+CGG + Chr4:18208618-18208637 None:intergenic 45.0%
CCTTTAGCCGTTGGAAACTT+AGG - Chr4:18208861-18208880 MsG0480019304.01.T01:intron 45.0%
CGTCAATTGCAGAGTTGTTC+GGG - Chr4:18208763-18208782 MsG0480019304.01.T01:intron 45.0%
CTGCAATTGACGAGTAAAGC+TGG + Chr4:18208755-18208774 None:intergenic 45.0%
CTTGCATTAGAAGCCATCTC+GGG + Chr4:18208617-18208636 None:intergenic 45.0%
CTTGTATTCTCGGTAGCTAG+TGG - Chr4:18208984-18209003 MsG0480019304.01.T01:intron 45.0%
GAATCTGATGCACATGTGGT+CGG + Chr4:18208069-18208088 None:intergenic 45.0%
GATGGAAATACCGTCTTGTG+TGG - Chr4:18208920-18208939 MsG0480019304.01.T01:intron 45.0%
TATACCTCGGAAGAAGCTTG+GGG + Chr4:18207161-18207180 None:intergenic 45.0%
TCAATGCCATAGTAGTTGCC+AGG - Chr4:18207641-18207660 MsG0480019304.01.T01:CDS 45.0%
TCCCATGACCATGAAGACTT+AGG + Chr4:18208108-18208127 None:intergenic 45.0%
TTGCATTAGAAGCCATCTCG+GGG + Chr4:18208616-18208635 None:intergenic 45.0%
! AGAAAGTTAGTACCGAGTGG+AGG - Chr4:18208427-18208446 MsG0480019304.01.T01:CDS 45.0%
! AGCCCCTTTTTGATATCTGC+TGG - Chr4:18209203-18209222 MsG0480019304.01.T01:intron 45.0%
! CCTTTTTGATATCTGCTGGG+AGG - Chr4:18209207-18209226 MsG0480019304.01.T01:intron 45.0%
! CTGAGAAAGTTAGTACCGAG+TGG - Chr4:18208424-18208443 MsG0480019304.01.T01:CDS 45.0%
! GCCCCTTTTTGATATCTGCT+GGG - Chr4:18209204-18209223 MsG0480019304.01.T01:intron 45.0%
! GCGGTAATGGTTCTTGGTAT+TGG - Chr4:18208813-18208832 MsG0480019304.01.T01:intron 45.0%
! GGGGTTTAGGAAGATTTGGT+TGG - Chr4:18207935-18207954 MsG0480019304.01.T01:CDS 45.0%
! TTAGGGTATGTGTCATTGCC+TGG - Chr4:18208486-18208505 MsG0480019304.01.T01:CDS 45.0%
! TTTGGAATGCCTTTAGCCGT+TGG - Chr4:18208852-18208871 MsG0480019304.01.T01:intron 45.0%
!! AAGTTGGGCTCTAAAGCGAA+TGG - Chr4:18208788-18208807 MsG0480019304.01.T01:intron 45.0%
!! AGATTAAATATAAATAAATA+GGG + Chr4:18207698-18207717 None:intergenic 5.0%
CAGAGTTGTTCGGGAGAAGT+TGG - Chr4:18208772-18208791 MsG0480019304.01.T01:intron 50.0%
CCGAGATGGCTTCTAATGCA+AGG - Chr4:18208615-18208634 MsG0480019304.01.T01:CDS 50.0%
GAAGCTTGGGGTATGGAAGA+AGG + Chr4:18207149-18207168 None:intergenic 50.0%
! GGCTTTTTGCGTTCGTCGAT+TGG - Chr4:18208378-18208397 MsG0480019304.01.T01:CDS 50.0%
!! AAAGCGAATGGTGGCGGTAA+TGG - Chr4:18208800-18208819 MsG0480019304.01.T01:intron 50.0%
!! ATGGTGGCGGTAATGGTTCT+TGG - Chr4:18208807-18208826 MsG0480019304.01.T01:intron 50.0%
!! TTGGGCTCTAAAGCGAATGG+TGG - Chr4:18208791-18208810 MsG0480019304.01.T01:intron 50.0%
ACCGAGTGGAGGTTCACTGT+TGG - Chr4:18208438-18208457 MsG0480019304.01.T01:CDS 55.0%
CATACCCCAAGCTTCTTCCG+AGG - Chr4:18207154-18207173 MsG0480019304.01.T01:CDS 55.0%
CCCAACAGTGAACCTCCACT+CGG + Chr4:18208442-18208461 None:intergenic 55.0%
CCGAGTGGAGGTTCACTGTT+GGG - Chr4:18208439-18208458 MsG0480019304.01.T01:CDS 55.0%
CTCGGAAGAAGCTTGGGGTA+TGG + Chr4:18207156-18207175 None:intergenic 55.0%
TAGAAGCCATCTCGGGGACT+CGG + Chr4:18208610-18208629 None:intergenic 55.0%
TTGTTACCGAGTCCCCGAGA+TGG - Chr4:18208601-18208620 MsG0480019304.01.T01:CDS 55.0%
!! GGCTCTAAAGCGAATGGTGG+CGG - Chr4:18208794-18208813 MsG0480019304.01.T01:intron 55.0%
! CTCGGTTTGCCGGAGTCAAG+AGG - Chr4:18209293-18209312 MsG0480019304.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 18207125 18209373 18207125 ID=MsG0480019304.01;Name=MsG0480019304.01
Chr4 mRNA 18207125 18209373 18207125 ID=MsG0480019304.01.T01;Parent=MsG0480019304.01;Name=MsG0480019304.01.T01;_AED=0.34;_eAED=0.34;_QI=0|0|0|1|0|0|2|0|529
Chr4 exon 18209323 18209373 18209323 ID=MsG0480019304.01.T01:exon:10742;Parent=MsG0480019304.01.T01
Chr4 exon 18207125 18208663 18207125 ID=MsG0480019304.01.T01:exon:10741;Parent=MsG0480019304.01.T01
Chr4 CDS 18209323 18209373 18209323 ID=MsG0480019304.01.T01:cds;Parent=MsG0480019304.01.T01
Chr4 CDS 18207125 18208663 18207125 ID=MsG0480019304.01.T01:cds;Parent=MsG0480019304.01.T01
Gene Sequence

>MsG0480019304.01.T01

ATGGCGGCTATAGAGGAGTTACCTTCTTCCATACCCCAAGCTTCTTCCGAGCAATTAGAAATGGCATTGGAAGATTCAGTTCCAATTTCAACTAATTCTAATTCTATTGAGCAGGAAAAAGTGATTCCTTCAACAGATGAAATGATGGAAAGGGGTTTAGGAAGATTTGGTTGGGTAGAATTTGTGCAATGCGTTCTTGTTTCATTCGCAATGTTCTTTGACGCACAACAATCGTTCATAACGATTTACACCGACGAATACCAAACATGGCATTGTACGAATCCGACCACATGTGCATCAGATTCTAACATCTGCAAAATTCCTAAGTCTTCATGGTCATGGGATGGACCAGCACACAAAACAGTGATATCTCAATGGAGTCTTGAATGTGCTAGTAGCTTTGTAACAGGTTTACCGCAATCTTCGTTCTTCATTGGTTGCCTTTTCGGTTCGTTTCTTCTAGCAACTTTAGCTGATACATCACTTGGTAGAAAGAACATGCTTGTTATGTCTTGTTTATCGATGTCTATAGTTTCAATTCTCATTGTTTTCTCTACCAATGTTTGGATTTATTCTGTTTTTAAATTCTTGATTGGCTTTTTGCGTTCGTCGATTGGAACTTGTGTTCTTGTTTTGCTAACTGAGAAAGTTAGTACCGAGTGGAGGTTCACTGTTGGGATTGTCGAATATTTCTGCTTCACATTAGGGTATGTGTCATTGCCTGGTATAGCTTATCTTAATAGATATAATTCGTGGAAATCGGTGTATATTTGGACATCGGTTCCTGCAATTATTTACTCAATCATTGCTTATATCTTTGTTACCGAGTCCCCGAGATGGCTTCTAATGCAAGGACGACATCAAGAAGCTATGGCAATGCTTAAAGGAGTTTCTTCTGTAGAGAACAGTGATGATATGATAGTAAGTTTAATAGAAGCCCCGGTGAATAAACAAAAGGCTTCGATTTTCCAGCTTTACTCGTCAATTGCAGAGTTGTTCGGGAGAAGTTGGGCTCTAAAGCGAATGGTGGCGGTAATGGTTCTTGGTATTGGAATTGGAATGGTTTATTTTGGAATGCCTTTAGCCGTTGGAAACTTAGGTTTTGACATTTATTTGGCTGTTGTGTTCAACGGTTTGATGGAAATACCGTCTTGTGTGGCTACTTATTTCTTGGAGAATCGCCAAAGAAAGCCATCGATTCTTGTATTCTCGGTAGCTAGTGGCATATGTTGTATAATGTGTGTTATTGTTGGATCGGGACAACAAGGAATTAAGGTCGGGTTAGCGATGACATCGTTTTTCAGTGCTTGCACAGCTTATAATGTGTTTCTCATTTACATTATTGAGCTGTTTCCAACAAGTGTGAGAAACACTACAACATCATTGGTGAGACAAGCTATTGTTTTTGGTAACATTTTCAGCCCCTTTTTGATATCTGCTGGGAGGAAAAATGACATTTTCTCATACGGCGTGTTTGGAGTTGTTATCATGTTGTCTTGTGTTACATTACTCGGTTTGCCGGAGTCAAGAGGATTAGCTCTTTCAGATACCATGGATCAACAAGAGAAGAAAGATGACATGTCAGTTTAA

Protein sequence

>MsG0480019304.01.T01

MAAIEELPSSIPQASSEQLEMALEDSVPISTNSNSIEQEKVIPSTDEMMERGLGRFGWVEFVQCVLVSFAMFFDAQQSFITIYTDEYQTWHCTNPTTCASDSNICKIPKSSWSWDGPAHKTVISQWSLECASSFVTGLPQSSFFIGCLFGSFLLATLADTSLGRKNMLVMSCLSMSIVSILIVFSTNVWIYSVFKFLIGFLRSSIGTCVLVLLTEKVSTEWRFTVGIVEYFCFTLGYVSLPGIAYLNRYNSWKSVYIWTSVPAIIYSIIAYIFVTESPRWLLMQGRHQEAMAMLKGVSSVENSDDMIVSLIEAPVNKQKASIFQLYSSIAELFGRSWALKRMVAVMVLGIGIGMVYFGMPLAVGNLGFDIYLAVVFNGLMEIPSCVATYFLENRQRKPSILVFSVASGICCIMCVIVGSGQQGIKVGLAMTSFFSACTAYNVFLIYIIELFPTSVRNTTTSLVRQAIVFGNIFSPFLISAGRKNDIFSYGVFGVVIMLSCVTLLGLPESRGLALSDTMDQQEKKDDMSV*