AlfalfaGEDB | MsG0180002303.01

M. sativa cultivar ZhongmuNo.1 / MsG0180002303.01

KEGG: -
GO: -
PFAM: PF00415

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002303.01.T01	KEH39709.1	87.713	293	9	1	4	269	155	447	0	520

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002303.01.T01	Q9FN03	31.78	236	123	8	21	240	161	374	5.71E-20	92

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002303.01.T01	A0A072VCE3	87.713	293	9	1	4	269	155	447	0.0	520

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180002298.01	MsG0180002303.01	0.873473	1.431086e-67	6.219183e-64
MsG0180002303.01	MsG0180002315.01	0.822981	1.770999e-53	1.505392e-50
MsG0180002303.01	MsG0480021360.01	0.800058	1.722302e-48	7.942494e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002303.01.T01	MTR_1g006695	87.713	293	9	1	4	269	155	447	0.0	520
MsG0180002303.01.T01	MTR_3g109650	59.386	293	87	5	4	268	71	359	3.70e-111	329
MsG0180002303.01.T01	MTR_3g109650	59.386	293	87	5	4	268	169	457	1.19e-109	328
MsG0180002303.01.T01	MTR_8g094410	31.174	247	125	9	13	240	17	237	1.09e-22	95.5
MsG0180002303.01.T01	MTR_8g094410	30.739	257	130	10	6	240	92	322	3.59e-22	95.1
MsG0180002303.01.T01	MTR_8g094410	29.130	230	114	9	34	240	15	218	3.21e-18	84.0
MsG0180002303.01.T01	MTR_8g094410	30.739	257	130	10	6	240	92	322	5.76e-22	94.0
MsG0180002303.01.T01	MTR_8g094410	29.130	230	114	9	34	240	15	218	4.40e-18	83.2
MsG0180002303.01.T01	MTR_8g094410	31.174	247	125	9	13	240	151	371	6.00e-22	94.7
MsG0180002303.01.T01	MTR_8g094410	27.731	238	132	8	20	240	53	267	3.98e-17	80.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180002303.01.T01	AT5G11580	51.493	268	101	4	4	243	16	282	1.20e-86	264
MsG0180002303.01.T01	AT5G11580	51.493	268	101	4	4	243	167	433	4.25e-85	265
MsG0180002303.01.T01	AT5G63860	31.780	236	123	8	21	240	161	374	5.82e-21	92.0
MsG0180002303.01.T01	AT5G63860	30.901	233	122	8	22	237	57	267	6.06e-20	89.0
MsG0180002303.01.T01	AT5G63860	28.879	232	114	8	32	240	15	218	5.45e-17	80.5
MsG0180002303.01.T01	AT5G12350	28.326	233	122	6	34	240	310	523	1.02e-15	77.4
MsG0180002303.01.T01	AT5G12350	26.000	250	136	8	19	240	399	627	1.38e-12	68.2
MsG0180002303.01.T01	AT5G19420	27.468	233	124	6	34	240	314	527	1.92e-14	73.6
MsG0180002303.01.T01	AT5G19420	25.200	250	138	8	19	240	403	631	8.24e-11	62.8
MsG0180002303.01.T01	AT5G19420	27.468	233	124	6	34	240	348	561	1.96e-14	73.6

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Find 76 sgRNAs with CRISPR-Local

Find 81 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGGTATATTCTCAAT+AGG	0.401673	1:-36479820	MsG0180002303.01.T01:CDS
AAAGTTTGGTCTTTCGGAAG+AGG	0.488876	1:-36479131	MsG0180002303.01.T01:CDS
AACAACAATCATGGTCAATT+AGG	0.358789	1:-36479649	MsG0180002303.01.T01:CDS
AATCATGGTCAATTAGGCTT+AGG	0.416968	1:-36479643	MsG0180002303.01.T01:CDS
AATCTTGGTGCCCTATGGAT+GGG	0.548417	1:-36479864	None:intergenic
AATCTTGTTTCTGTTGACTG+TGG	0.587618	1:-36479374	MsG0180002303.01.T01:CDS
ACACCAGTATGGGATTTCCA+TGG	0.640967	1:-36479781	MsG0180002303.01.T01:CDS
ACAGTAGTAAAAGTTGCATG+TGG	0.647702	1:-36479754	MsG0180002303.01.T01:CDS
ACATTCCCACTTTAGTGTTA+TGG	0.311232	1:-36479067	MsG0180002303.01.T01:CDS
ACATTTGATCAAGATTCTCA+TGG	0.551383	1:-36479583	MsG0180002303.01.T01:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACAACAATCATGGTCAATT+AGG	-	Chr1:36479184-36479203	MsG0180002303.01.T01:CDS	30.0%
ACATTTGATCAAGATTCTCA+TGG	-	Chr1:36479250-36479269	MsG0180002303.01.T01:CDS	30.0%
ATTATAGCACTAGTTAGTGT+TGG	-	Chr1:36479112-36479131	MsG0180002303.01.T01:CDS	30.0%
TAAGGATTGCTTACAATAAG+CGG	+	Chr1:36479606-36479625	None:intergenic	30.0%
TATTGTAAGCAATCCTTATG+AGG	-	Chr1:36479608-36479627	MsG0180002303.01.T01:CDS	30.0%
TCTAAAAACTTAGCCTCATA+AGG	+	Chr1:36479624-36479643	None:intergenic	30.0%
AATCATGGTCAATTAGGCTT+AGG	-	Chr1:36479190-36479209	MsG0180002303.01.T01:CDS	35.0%
ACAGTAGTAAAAGTTGCATG+TGG	-	Chr1:36479079-36479098	MsG0180002303.01.T01:CDS	35.0%
ACATTCCCACTTTAGTGTTA+TGG	-	Chr1:36479766-36479785	MsG0180002303.01.T01:CDS	35.0%
ACCAAACTTTATATCCCTCT+TGG	+	Chr1:36479692-36479711	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	36478983	36479872	36478983	ID=MsG0180002303.01;Name=MsG0180002303.01
Chr1	mRNA	36478983	36479872	36478983	ID=MsG0180002303.01.T01;Parent=MsG0180002303.01;Name=MsG0180002303.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|0\|0\|1\|1\|1\|2\|0\|269
Chr1	exon	36479584	36479872	36479584	ID=MsG0180002303.01.T01:exon:153;Parent=MsG0180002303.01.T01
Chr1	exon	36478983	36479503	36478983	ID=MsG0180002303.01.T01:exon:154;Parent=MsG0180002303.01.T01
Chr1	CDS	36479584	36479872	36479584	ID=MsG0180002303.01.T01:cds;Parent=MsG0180002303.01.T01
Chr1	CDS	36478983	36479503	36478983	ID=MsG0180002303.01.T01:cds;Parent=MsG0180002303.01.T01

Gene Sequence

>MsG0180002303.01.T01

ATGGATGGGGGAAACTGTCCACATCAAAGCAAAGAAGGTATATTCTCAATAGGAAGCCATTTCACTCCAACACCAGTATGGGATTTCCATGGTCACACAGTAGTAAAAGTTGCATGTGGAAATGAACACATTATAGCACTAGTTAGTGTTGGAGAATCATACAATGGTGAAAATGATGATCTCATTTGTTACTCTTGGGGTAACAACAATCATGGTCAATTAGGCTTAGGGGACACGGACGATAGACCAAATCCAGAAATGGTAAAAACATTTGATCAAGATTCTCATGAAAGTGTGTGTTGGACATTTGGTCTTGGTGAAAATGGACAACTTGGTCATGGAACAACACAAAGTACATCAATTCCTGAACTTGTTCAAGAATTGCCACAATTTGTAAATCTTGTTTCTGTTGACTGTGGTTTGTTTCATACTTGTGTTGTTTCGTCGGACGGGGATGTTTGGTCGTGGGGAATGGAGAAGGGTCTTGGTTTGTATCCGGATGCGCGAGTTGTTGGTGAATATTCTAGTGATGCTCTTTCTCCGCTTATTGTAAGCAATCCTTATGAGGCTAAGTTTTTAGAACCGGTTCAAGTTGCATGTGGCGCGGCTCATACTATTATTGTTGCCCAAGAGGGATATAAAGTTTGGTCTTTCGGAAGAGGAAGAAGTGGTGTTCTTGGAAATGGTAATGTAGTAGATTGTTACATTCCCACTTTAGTGTTATGGCCTCCACTGGTGGAAGATTTTCATCTCAAACAAGAGGAACCATCGAGTCTTCGCAAGCAAGATAAGGGAAAAGAAGAAGACTAA

Protein sequence

>MsG0180002303.01.T01

MDGGNCPHQSKEGIFSIGSHFTPTPVWDFHGHTVVKVACGNEHIIALVSVGESYNGENDDLICYSWGNNNHGQLGLGDTDDRPNPEMVKTFDQDSHESVCWTFGLGENGQLGHGTTQSTSIPELVQELPQFVNLVSVDCGLFHTCVVSSDGDVWSWGMEKGLGLYPDARVVGEYSSDALSPLIVSNPYEAKFLEPVQVACGAAHTIIVAQEGYKVWSFGRGRSGVLGNGNVVDCYIPTLVLWPPLVEDFHLKQEEPSSLRKQDKGKEED*