Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002315.01.T01 | RHN76652.1 | 78.226 | 372 | 22 | 4 | 1 | 314 | 1 | 371 | 0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002315.01.T01 | Q9FN03 | 28.253 | 269 | 134 | 10 | 57 | 283 | 16 | 267 | 1.38E-15 | 80.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002315.01.T01 | A0A396JH80 | 78.226 | 372 | 22 | 4 | 1 | 314 | 1 | 371 | 0.0 | 566 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002298.01 | MsG0180002315.01 | 0.912906 | 1.137232e-83 | 2.619065e-79 |
| MsG0180002303.01 | MsG0180002315.01 | 0.822981 | 1.770999e-53 | 1.505392e-50 |
| MsG0180002312.01 | MsG0180002315.01 | 0.805297 | 1.428693e-49 | 7.531258e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002315.01.T01 | MTR_1g006695 | 77.208 | 351 | 22 | 3 | 22 | 314 | 96 | 446 | 0.0 | 531 |
| MsG0180002315.01.T01 | MTR_3g109650 | 51.084 | 415 | 129 | 10 | 1 | 356 | 1 | 400 | 1.13e-125 | 369 |
| MsG0180002315.01.T01 | MTR_3g109650 | 51.392 | 395 | 127 | 9 | 21 | 356 | 110 | 498 | 3.25e-119 | 356 |
| MsG0180002315.01.T01 | MTR_8g094410 | 28.625 | 269 | 139 | 11 | 58 | 286 | 67 | 322 | 1.04e-18 | 87.0 |
| MsG0180002315.01.T01 | MTR_8g094410 | 28.625 | 269 | 139 | 11 | 58 | 286 | 67 | 322 | 2.65e-18 | 85.5 |
| MsG0180002315.01.T01 | MTR_8g094410 | 29.104 | 268 | 139 | 10 | 56 | 286 | 118 | 371 | 3.00e-18 | 85.9 |
| MsG0180002315.01.T01 | MTR_8g094410 | 28.125 | 224 | 112 | 8 | 100 | 286 | 56 | 267 | 1.73e-15 | 77.8 |
| MsG0180002315.01.T01 | MTR_8g094410 | 29.614 | 233 | 116 | 8 | 90 | 286 | 17 | 237 | 4.50e-18 | 84.3 |
| MsG0180002315.01.T01 | MTR_8g094410 | 29.104 | 268 | 139 | 10 | 56 | 286 | 118 | 371 | 8.42e-18 | 84.3 |
| MsG0180002315.01.T01 | MTR_8g094410 | 28.125 | 224 | 112 | 8 | 100 | 286 | 56 | 267 | 3.99e-15 | 76.3 |
| MsG0180002315.01.T01 | MTR_3g096780 | 27.715 | 267 | 144 | 9 | 56 | 286 | 120 | 373 | 1.21e-17 | 84.0 |
| MsG0180002315.01.T01 | MTR_3g096780 | 26.236 | 263 | 146 | 8 | 57 | 283 | 16 | 266 | 1.43e-14 | 74.7 |
| MsG0180002315.01.T01 | MTR_3g096780 | 30.374 | 214 | 99 | 10 | 111 | 286 | 17 | 218 | 3.68e-14 | 73.6 |
| MsG0180002315.01.T01 | MTR_8g094410 | 31.100 | 209 | 96 | 8 | 114 | 286 | 2 | 198 | 1.51e-16 | 79.3 |
| MsG0180002315.01.T01 | MTR_0095s0070 | 27.753 | 227 | 115 | 8 | 97 | 286 | 49 | 263 | 8.47e-16 | 77.0 |
| MsG0180002315.01.T01 | MTR_0024s0070 | 28.049 | 246 | 117 | 9 | 55 | 286 | 148 | 347 | 2.05e-14 | 74.3 |
| MsG0180002315.01.T01 | MTR_4g029410 | 25.769 | 260 | 138 | 8 | 56 | 298 | 173 | 394 | 1.44e-12 | 69.3 |
| MsG0180002315.01.T01 | MTR_3g097060 | 26.797 | 306 | 141 | 12 | 57 | 298 | 121 | 407 | 1.67e-12 | 68.6 |
| MsG0180002315.01.T01 | MTR_3g069030 | 26.894 | 264 | 115 | 13 | 56 | 257 | 215 | 462 | 3.15e-12 | 67.8 |
| MsG0180002315.01.T01 | MTR_3g097060 | 27.636 | 275 | 124 | 12 | 57 | 279 | 121 | 372 | 1.31e-11 | 65.5 |
| MsG0180002315.01.T01 | MTR_7g063440 | 25.856 | 263 | 121 | 12 | 56 | 257 | 139 | 388 | 1.36e-11 | 65.5 |
| MsG0180002315.01.T01 | MTR_7g063440 | 26.236 | 263 | 120 | 13 | 56 | 257 | 231 | 480 | 1.48e-11 | 65.9 |
| MsG0180002315.01.T01 | MTR_3g086300 | 27.612 | 268 | 138 | 11 | 56 | 279 | 198 | 453 | 1.68e-11 | 65.9 |
| MsG0180002315.01.T01 | MTR_7g016640 | 29.268 | 205 | 84 | 10 | 73 | 258 | 140 | 302 | 4.28e-11 | 64.3 |
| MsG0180002315.01.T01 | MTR_7g016640 | 28.713 | 202 | 89 | 10 | 73 | 258 | 140 | 302 | 5.84e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002315.01.T01 | AT5G11580 | 47.095 | 327 | 114 | 6 | 21 | 289 | 108 | 433 | 3.06e-90 | 281 |
| MsG0180002315.01.T01 | AT5G11580 | 48.936 | 282 | 86 | 5 | 66 | 289 | 1 | 282 | 8.30e-84 | 260 |
| MsG0180002315.01.T01 | AT5G63860 | 28.253 | 269 | 134 | 10 | 57 | 283 | 16 | 267 | 1.41e-16 | 80.9 |
| MsG0180002315.01.T01 | AT5G63860 | 28.253 | 269 | 141 | 10 | 56 | 286 | 120 | 374 | 7.98e-16 | 78.6 |
| MsG0180002315.01.T01 | AT3G02510 | 27.211 | 294 | 142 | 11 | 55 | 331 | 91 | 329 | 9.49e-16 | 77.8 |
| MsG0180002315.01.T01 | AT3G02510 | 27.211 | 294 | 142 | 11 | 55 | 331 | 149 | 387 | 1.91e-15 | 77.4 |
| MsG0180002315.01.T01 | AT5G16040 | 27.984 | 243 | 115 | 9 | 55 | 283 | 149 | 345 | 3.32e-15 | 76.6 |
| MsG0180002315.01.T01 | AT3G55580 | 27.239 | 268 | 112 | 12 | 56 | 256 | 234 | 485 | 6.28e-15 | 76.3 |
| MsG0180002315.01.T01 | AT3G23270 | 29.268 | 246 | 110 | 10 | 64 | 286 | 200 | 404 | 1.63e-13 | 72.4 |
| MsG0180002315.01.T01 | AT3G23270 | 29.268 | 246 | 110 | 10 | 64 | 286 | 204 | 408 | 1.82e-13 | 72.4 |
| MsG0180002315.01.T01 | AT5G08710 | 25.517 | 290 | 163 | 8 | 58 | 298 | 136 | 421 | 4.12e-12 | 67.4 |
| MsG0180002315.01.T01 | AT5G12350 | 26.339 | 224 | 107 | 6 | 111 | 286 | 310 | 523 | 6.04e-12 | 67.4 |
| MsG0180002315.01.T01 | AT1G76950 | 27.311 | 238 | 113 | 8 | 72 | 286 | 235 | 435 | 7.61e-12 | 67.4 |
| MsG0180002315.01.T01 | AT5G19420 | 25.446 | 224 | 109 | 6 | 111 | 286 | 348 | 561 | 8.03e-11 | 63.9 |
| MsG0180002315.01.T01 | AT1G69710 | 24.306 | 288 | 144 | 9 | 56 | 286 | 339 | 609 | 8.95e-11 | 63.9 |
| MsG0180002315.01.T01 | AT5G19420 | 25.446 | 224 | 109 | 6 | 111 | 286 | 314 | 527 | 9.28e-11 | 63.9 |
Find 95 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATATCCATCTGTATATTT+TGG | 0.075999 | 1:+36608270 | None:intergenic |
| GACATTTGTCTTGGTGAAAA+TGG | 0.257690 | 1:-36607118 | MsG0180002315.01.T01:CDS |
| GGCAATTCTTGAACAAGTTC+AGG | 0.304428 | 1:+36607058 | None:intergenic |
| ACATTCCCACTTTAGTGTTA+TGG | 0.311232 | 1:-36606719 | MsG0180002315.01.T01:CDS |
| GATTCTTCAACCTTAGTGTT+AGG | 0.317268 | 1:-36608198 | MsG0180002315.01.T01:CDS |
| CGAGTCTTCGCAAGCAAGAT+AGG | 0.319294 | 1:-36606653 | MsG0180002315.01.T01:CDS |
| AACACTAAGGTTGAAGAATC+TGG | 0.321857 | 1:+36608201 | None:intergenic |
| ATGATCTCATTTGTTACTCT+TGG | 0.325653 | 1:-36607324 | MsG0180002315.01.T01:CDS |
| TGATCTCATTTGTTACTCTT+GGG | 0.348009 | 1:-36607323 | MsG0180002315.01.T01:CDS |
| GGATATAAAGTTTGGTCTTT+CGG | 0.350572 | 1:-36606789 | MsG0180002315.01.T01:CDS |
| AACAACAATCATGGTCAATT+AGG | 0.358789 | 1:-36607298 | MsG0180002315.01.T01:CDS |
| ATTTCACTCCAACACCAGTA+TGG | 0.359909 | 1:-36607441 | MsG0180002315.01.T01:CDS |
| CCCAAGAGGGATATAAAGTT+TGG | 0.374797 | 1:-36606797 | MsG0180002315.01.T01:CDS |
| TGGGGAATGGAGAAGGGTCT+TGG | 0.396465 | 1:-36606956 | MsG0180002315.01.T01:CDS |
| CTTGTGTTGTTTCGTCGGAC+GGG | 0.396749 | 1:-36606991 | MsG0180002315.01.T01:CDS |
| AGAGGAAGAAGTGGTGTTCT+TGG | 0.401196 | 1:-36606765 | MsG0180002315.01.T01:CDS |
| AAAGAAGGTATATTCTCAAT+AGG | 0.401673 | 1:-36607469 | MsG0180002315.01.T01:CDS |
| TTCACCAACACTCGCGCATC+CGG | 0.405449 | 1:+36606926 | None:intergenic |
| ACCAAACTTTATATCCCTCT+TGG | 0.406767 | 1:+36606796 | None:intergenic |
| AATCATGGTCAATTAGGCTT+AGG | 0.416968 | 1:-36607292 | MsG0180002315.01.T01:CDS |
| GGACGGGGATGTTTGGTCGT+GGG | 0.423753 | 1:-36606975 | MsG0180002315.01.T01:CDS |
| TTTCGTCGGACGGGGATGTT+TGG | 0.425452 | 1:-36606982 | MsG0180002315.01.T01:CDS |
| TCACTATCTATTGACAATCT+TGG | 0.426654 | 1:-36607529 | MsG0180002315.01.T01:CDS |
| GGATGTTTGGTCGTGGGGAA+TGG | 0.440538 | 1:-36606969 | MsG0180002315.01.T01:CDS |
| AGAAGTGGTGTTCTTGGAAA+TGG | 0.441734 | 1:-36606759 | MsG0180002315.01.T01:CDS |
| ATCATGGTCAATTAGGCTTA+GGG | 0.441736 | 1:-36607291 | MsG0180002315.01.T01:CDS |
| CCAAACTTTATATCCCTCTT+GGG | 0.449742 | 1:+36606797 | None:intergenic |
| GAAACAAGATTTACAAATTG+TGG | 0.452095 | 1:+36607037 | None:intergenic |
| ACATGTCAAAGAGATTATAA+AGG | 0.454777 | 1:-36606589 | MsG0180002315.01.T01:CDS |
| GCGCCACATGCAACTTGAAC+CGG | 0.459245 | 1:+36606840 | None:intergenic |
| GAAGGGTCTTGGTTTGTATC+CGG | 0.461196 | 1:-36606945 | MsG0180002315.01.T01:CDS |
| CGATAGACCAAATCCAGAAA+TGG | 0.467053 | 1:-36607260 | MsG0180002315.01.T01:intron |
| TTGACAATCTTGGTGCCCTA+TGG | 0.467260 | 1:-36607519 | MsG0180002315.01.T01:CDS |
| TTGTGTTGTTTCGTCGGACG+GGG | 0.482207 | 1:-36606990 | MsG0180002315.01.T01:CDS |
| TTCCTTGACTATTGTATGGA+TGG | 0.482878 | 1:-36608333 | None:intergenic |
| TTTAGTGTTATGGCCTCCAC+TGG | 0.484787 | 1:-36606709 | MsG0180002315.01.T01:CDS |
| AAAGTTTGGTCTTTCGGAAG+AGG | 0.488876 | 1:-36606783 | MsG0180002315.01.T01:CDS |
| TCATACTTGTGTTGTTTCGT+CGG | 0.493278 | 1:-36606996 | MsG0180002315.01.T01:CDS |
| ACACTAAGGTTGAAGAATCT+GGG | 0.493928 | 1:+36608202 | None:intergenic |
| TTCTGCTTCTCCTAACACTA+AGG | 0.495421 | 1:+36608188 | None:intergenic |
| ACTTGTGTTGTTTCGTCGGA+CGG | 0.501899 | 1:-36606992 | MsG0180002315.01.T01:CDS |
| ATCTTGGTGCCCTATGGATG+TGG | 0.506487 | 1:-36607513 | MsG0180002315.01.T01:CDS |
| TAGAATATTTGATATAAGAA+TGG | 0.507201 | 1:+36606515 | None:intergenic |
| TTGGTCGTGGGGAATGGAGA+AGG | 0.511138 | 1:-36606963 | MsG0180002315.01.T01:CDS |
| GATCTCATTTGTTACTCTTG+GGG | 0.511727 | 1:-36607322 | MsG0180002315.01.T01:CDS |
| ATTATAGCACTAGTTAGTGT+TGG | 0.512070 | 1:-36607370 | MsG0180002315.01.T01:CDS |
| ATACCTTCTTTGCTTTGATG+TGG | 0.514646 | 1:+36607481 | None:intergenic |
| CGGACGGGGATGTTTGGTCG+TGG | 0.518856 | 1:-36606976 | MsG0180002315.01.T01:CDS |
| AGTGTTATGGCCTCCACTGG+TGG | 0.519776 | 1:-36606706 | MsG0180002315.01.T01:CDS |
| GACAGTTTCCCCACATCCAT+AGG | 0.520889 | 1:+36607503 | None:intergenic |
| CAGATAATTTCTATCAAAGC+AGG | 0.524240 | 1:-36607562 | MsG0180002315.01.T01:CDS |
| TGGAAATCCCATACTGGTGT+TGG | 0.534551 | 1:+36607433 | None:intergenic |
| TTTCACTCCAACACCAGTAT+GGG | 0.536712 | 1:-36607440 | MsG0180002315.01.T01:CDS |
| TGTCCACATCAAAGCAAAGA+AGG | 0.542595 | 1:-36607484 | MsG0180002315.01.T01:CDS |
| AGAAGGGAAAGCACAACTAA+AGG | 0.544057 | 1:-36608169 | MsG0180002315.01.T01:intron |
| CACTAAGGTTGAAGAATCTG+GGG | 0.549616 | 1:+36608203 | None:intergenic |
| TCTTGGGGTAACAACAATCA+TGG | 0.553129 | 1:-36607307 | MsG0180002315.01.T01:CDS |
| CTTGGTGAAAATGGACAACT+TGG | 0.556105 | 1:-36607109 | MsG0180002315.01.T01:CDS |
| TGGAGGCCATAACACTAAAG+TGG | 0.557548 | 1:+36606713 | None:intergenic |
| GACGGGGATGTTTGGTCGTG+GGG | 0.558285 | 1:-36606974 | MsG0180002315.01.T01:CDS |
| TCTTGCTTGCGAAGACTCGA+TGG | 0.566297 | 1:+36606657 | None:intergenic |
| AGAAACTTGTTCAATAAGCA+AGG | 0.568491 | 1:+36608237 | None:intergenic |
| AATCTTGTTTCTGTTAACTG+TGG | 0.570236 | 1:-36607025 | MsG0180002315.01.T01:CDS |
| GAGTCTTCGCAAGCAAGATA+GGG | 0.570800 | 1:-36606652 | MsG0180002315.01.T01:CDS |
| ATACTGGTGTTGGAGTGAAA+TGG | 0.571831 | 1:+36607443 | None:intergenic |
| TGACCATGGAAATCCCATAC+TGG | 0.572116 | 1:+36607427 | None:intergenic |
| ACTATTATTGTTGCCCAAGA+GGG | 0.572627 | 1:-36606810 | MsG0180002315.01.T01:CDS |
| AACAACCCAAAATATACAGA+TGG | 0.573843 | 1:-36608276 | MsG0180002315.01.T01:CDS |
| TGTGTGTTGGACATTTGTCT+TGG | 0.576108 | 1:-36607127 | MsG0180002315.01.T01:CDS |
| TATTGTATGGATGGTCAACT+TGG | 0.576747 | 1:-36608324 | None:intergenic |
| TGGTCGTGGGGAATGGAGAA+GGG | 0.577448 | 1:-36606962 | MsG0180002315.01.T01:CDS |
| TACTATTATTGTTGCCCAAG+AGG | 0.588315 | 1:-36606811 | MsG0180002315.01.T01:CDS |
| ATACACTAATTTCCTCACAT+AGG | 0.588579 | 1:+36606556 | None:intergenic |
| TGAAAATCTTCCACCAGTGG+AGG | 0.601227 | 1:+36606696 | None:intergenic |
| TCAATTAGGCTTAGGGGACA+CGG | 0.606430 | 1:-36607284 | MsG0180002315.01.T01:CDS |
| GGAGGCCATAACACTAAAGT+GGG | 0.606579 | 1:+36606714 | None:intergenic |
| GAAAATGGACAACTTGGTCA+TGG | 0.608046 | 1:-36607103 | MsG0180002315.01.T01:CDS |
| AGATGAAAATCTTCCACCAG+TGG | 0.610842 | 1:+36606693 | None:intergenic |
| ACTTGGTATCATCAATGAAG+AGG | 0.612761 | 1:-36608307 | MsG0180002315.01.T01:CDS |
| GAACCGGTTCAAGTTGCATG+TGG | 0.613809 | 1:-36606843 | MsG0180002315.01.T01:CDS |
| TCTTGGTGCCCTATGGATGT+GGG | 0.615493 | 1:-36607512 | MsG0180002315.01.T01:CDS |
| ATACATTAGAAAGTGTGTGT+TGG | 0.618605 | 1:-36607140 | MsG0180002315.01.T01:intron |
| ACAGTTTCCCCACATCCATA+GGG | 0.620374 | 1:+36607504 | None:intergenic |
| TAGTGTTAGGAGAAGCAGAA+GGG | 0.632466 | 1:-36608185 | MsG0180002315.01.T01:CDS |
| TCTTTCGGAAGAGGAAGAAG+TGG | 0.632514 | 1:-36606774 | MsG0180002315.01.T01:CDS |
| GGTTCAAGTTGCATGTGGCG+CGG | 0.633426 | 1:-36606838 | MsG0180002315.01.T01:CDS |
| ACACCAGTATGGGATTTCCA+TGG | 0.640967 | 1:-36607430 | MsG0180002315.01.T01:CDS |
| GGAATTCATAAACCTATGTG+AGG | 0.643253 | 1:-36606568 | MsG0180002315.01.T01:CDS |
| TCATGGTCAATTAGGCTTAG+GGG | 0.643451 | 1:-36607290 | MsG0180002315.01.T01:CDS |
| ATAATTTCTATCAAAGCAGG+AGG | 0.644938 | 1:-36607559 | MsG0180002315.01.T01:CDS |
| ACAGTAGTAAAAGTTGCATG+TGG | 0.647702 | 1:-36607403 | MsG0180002315.01.T01:CDS |
| TTAGTGTTAGGAGAAGCAGA+AGG | 0.657050 | 1:-36608186 | MsG0180002315.01.T01:CDS |
| AGTGTTGGAGAATCATACAA+TGG | 0.686513 | 1:-36607355 | MsG0180002315.01.T01:CDS |
| CTTGGTGCCCTATGGATGTG+GGG | 0.689350 | 1:-36607511 | MsG0180002315.01.T01:CDS |
| ACTAAGGTTGAAGAATCTGG+GGG | 0.698521 | 1:+36608204 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAATATTTGATATAAGAA+TGG | + | Chr1:36608318-36608337 | None:intergenic | 15.0% |
| !! | TCAATTTATGAAATATCATG+TGG | - | Chr1:36607620-36607639 | MsG0180002315.01.T01:intron | 20.0% |
| !! | TTGATTTAGTAAAATTGACT+TGG | - | Chr1:36607006-36607025 | MsG0180002315.01.T01:CDS | 20.0% |
| !!! | AATATCCATCTGTATATTTT+GGG | + | Chr1:36606562-36606581 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTAGAGTCTGTT+TGG | + | Chr1:36607196-36607215 | None:intergenic | 20.0% |
| !!! | TAATATCCATCTGTATATTT+TGG | + | Chr1:36606563-36606582 | None:intergenic | 20.0% |
| ! | AAACTCTAAATCAATCCAAA+TGG | - | Chr1:36606935-36606954 | MsG0180002315.01.T01:intron | 25.0% |
| ! | ACATGTCAAAGAGATTATAA+AGG | - | Chr1:36608241-36608260 | MsG0180002315.01.T01:CDS | 25.0% |
| ! | CTTTGTTAACTCATAGAAAA+AGG | - | Chr1:36607657-36607676 | MsG0180002315.01.T01:intron | 25.0% |
| ! | GAAACAAGATTTACAAATTG+TGG | + | Chr1:36607796-36607815 | None:intergenic | 25.0% |
| ! | TAAGTACTTATGAGACTATT+TGG | + | Chr1:36606904-36606923 | None:intergenic | 25.0% |
| ! | TATTTGTGATAAGTGTACAA+AGG | + | Chr1:36606754-36606773 | None:intergenic | 25.0% |
| ! | TTAGTACAAATCTAGATGTT+TGG | + | Chr1:36607123-36607142 | None:intergenic | 25.0% |
| ! | TTTGATAGAAATTATCTGGT+GGG | + | Chr1:36607266-36607285 | None:intergenic | 25.0% |
| !! | AAAGAAGGTATATTCTCAAT+AGG | - | Chr1:36607361-36607380 | MsG0180002315.01.T01:CDS | 25.0% |
| !! | TTGATTTAGAGTTTATCTAC+TGG | + | Chr1:36606929-36606948 | None:intergenic | 25.0% |
| !!! | ATCAATGTTTTTACCATTTC+TGG | + | Chr1:36607586-36607605 | None:intergenic | 25.0% |
| !!! | GTTGTTTTCAAAAGCTATTT+TGG | - | Chr1:36606835-36606854 | MsG0180002315.01.T01:CDS | 25.0% |
| AAATGGAACTTAAGTGTGTT+GGG | - | Chr1:36606952-36606971 | MsG0180002315.01.T01:CDS | 30.0% | |
| AACAACAATCATGGTCAATT+AGG | - | Chr1:36607532-36607551 | MsG0180002315.01.T01:CDS | 30.0% | |
| AACAACCCAAAATATACAGA+TGG | - | Chr1:36606554-36606573 | MsG0180002315.01.T01:CDS | 30.0% | |
| AACATTGATCAGATTCTCAT+TGG | - | Chr1:36607597-36607616 | MsG0180002315.01.T01:intron | 30.0% | |
| ATAATTTCTATCAAAGCAGG+AGG | - | Chr1:36607271-36607290 | MsG0180002315.01.T01:CDS | 30.0% | |
| ATACACTAATTTCCTCACAT+AGG | + | Chr1:36608277-36608296 | None:intergenic | 30.0% | |
| ATTATAGCACTAGTTAGTGT+TGG | - | Chr1:36607460-36607479 | MsG0180002315.01.T01:CDS | 30.0% | |
| CAGATAATTTCTATCAAAGC+AGG | - | Chr1:36607268-36607287 | MsG0180002315.01.T01:CDS | 30.0% | |
| CTGCTTTGATAGAAATTATC+TGG | + | Chr1:36607270-36607289 | None:intergenic | 30.0% | |
| CTTTGATAGAAATTATCTGG+TGG | + | Chr1:36607267-36607286 | None:intergenic | 30.0% | |
| TAAGGATTGCTTACAATAAG+CGG | + | Chr1:36607951-36607970 | None:intergenic | 30.0% | |
| TATTGTAAGCAATCCTTATG+AGG | - | Chr1:36607953-36607972 | MsG0180002315.01.T01:intron | 30.0% | |
| TCACTATCTATTGACAATCT+TGG | - | Chr1:36607301-36607320 | MsG0180002315.01.T01:CDS | 30.0% | |
| TCTAAAAACTTAGCCTCATA+AGG | + | Chr1:36607969-36607988 | None:intergenic | 30.0% | |
| TTAGAGTCTGTTTGGATTTA+TGG | + | Chr1:36607188-36607207 | None:intergenic | 30.0% | |
| TTGATAGAAATTATCTGGTG+GGG | + | Chr1:36607265-36607284 | None:intergenic | 30.0% | |
| TTGGATTATGTCATAAGTTG+TGG | - | Chr1:36606864-36606883 | MsG0180002315.01.T01:intron | 30.0% | |
| ! | AGAAACTTGTTCAATAAGCA+AGG | + | Chr1:36606596-36606615 | None:intergenic | 30.0% |
| ! | AGATTTTCATCTCAAACAAG+AGG | - | Chr1:36608148-36608167 | MsG0180002315.01.T01:intron | 30.0% |
| ! | ATACATTAGAAAGTGTGTGT+TGG | - | Chr1:36607690-36607709 | MsG0180002315.01.T01:intron | 30.0% |
| ! | ATGATCTCATTTGTTACTCT+TGG | - | Chr1:36607506-36607525 | MsG0180002315.01.T01:CDS | 30.0% |
| ! | GGATATAAAGTTTGGTCTTT+CGG | - | Chr1:36608041-36608060 | MsG0180002315.01.T01:intron | 30.0% |
| ! | TGATCTCATTTGTTACTCTT+GGG | - | Chr1:36607507-36607526 | MsG0180002315.01.T01:CDS | 30.0% |
| ! | TGTCAAAACTGAATTTTGTC+TGG | + | Chr1:36607158-36607177 | None:intergenic | 30.0% |
| !! | AATCTTGTTTCTGTTAACTG+TGG | - | Chr1:36607805-36607824 | MsG0180002315.01.T01:intron | 30.0% |
| !! | GTTTTTACCATTTCTGGATT+TGG | + | Chr1:36607580-36607599 | None:intergenic | 30.0% |
| !! | TTTCAAAAGCTATTTTGGAG+AGG | - | Chr1:36606840-36606859 | MsG0180002315.01.T01:CDS | 30.0% |
| AACACTAAGGTTGAAGAATC+TGG | + | Chr1:36606632-36606651 | None:intergenic | 35.0% | |
| AATCATGGTCAATTAGGCTT+AGG | - | Chr1:36607538-36607557 | MsG0180002315.01.T01:CDS | 35.0% | |
| ACACTAAGGTTGAAGAATCT+GGG | + | Chr1:36606631-36606650 | None:intergenic | 35.0% | |
| ACAGTAGTAAAAGTTGCATG+TGG | - | Chr1:36607427-36607446 | MsG0180002315.01.T01:CDS | 35.0% | |
| ACATTCCCACTTTAGTGTTA+TGG | - | Chr1:36608111-36608130 | MsG0180002315.01.T01:intron | 35.0% | |
| ACCAAACTTTATATCCCTCT+TGG | + | Chr1:36608037-36608056 | None:intergenic | 35.0% | |
| ACTATTATTGTTGCCCAAGA+GGG | - | Chr1:36608020-36608039 | MsG0180002315.01.T01:intron | 35.0% | |
| ACTTGGTATCATCAATGAAG+AGG | - | Chr1:36606523-36606542 | MsG0180002315.01.T01:CDS | 35.0% | |
| ATACCTTCTTTGCTTTGATG+TGG | + | Chr1:36607352-36607371 | None:intergenic | 35.0% | |
| ATCATGGTCAATTAGGCTTA+GGG | - | Chr1:36607539-36607558 | MsG0180002315.01.T01:CDS | 35.0% | |
| CAAATGGAACTTAAGTGTGT+TGG | - | Chr1:36606951-36606970 | MsG0180002315.01.T01:CDS | 35.0% | |
| CAACACACTTAAGTTCCATT+TGG | + | Chr1:36606953-36606972 | None:intergenic | 35.0% | |
| CCAAACTTTATATCCCTCTT+GGG | + | Chr1:36608036-36608055 | None:intergenic | 35.0% | |
| GACATTTGTCTTGGTGAAAA+TGG | - | Chr1:36607712-36607731 | MsG0180002315.01.T01:intron | 35.0% | |
| GATTCTTCAACCTTAGTGTT+AGG | - | Chr1:36606632-36606651 | MsG0180002315.01.T01:CDS | 35.0% | |
| GGAATTCATAAACCTATGTG+AGG | - | Chr1:36608262-36608281 | MsG0180002315.01.T01:CDS | 35.0% | |
| TACTATTATTGTTGCCCAAG+AGG | - | Chr1:36608019-36608038 | MsG0180002315.01.T01:intron | 35.0% | |
| ! | AGTGTTGGAGAATCATACAA+TGG | - | Chr1:36607475-36607494 | MsG0180002315.01.T01:CDS | 35.0% |
| ! | GATCTCATTTGTTACTCTTG+GGG | - | Chr1:36607508-36607527 | MsG0180002315.01.T01:CDS | 35.0% |
| !! | AAAGCTATTTTGGAGAGGAT+TGG | - | Chr1:36606845-36606864 | MsG0180002315.01.T01:CDS | 35.0% |
| !! | TCATACTTGTGTTGTTTCGT+CGG | - | Chr1:36607834-36607853 | MsG0180002315.01.T01:intron | 35.0% |
| !!! | TGAGGCTAAGTTTTTAGAAC+CGG | - | Chr1:36607971-36607990 | MsG0180002315.01.T01:intron | 35.0% |
| ACTAAGGTTGAAGAATCTGG+GGG | + | Chr1:36606629-36606648 | None:intergenic | 40.0% | |
| AGAAGTGGTGTTCTTGGAAA+TGG | - | Chr1:36608071-36608090 | MsG0180002315.01.T01:intron | 40.0% | |
| AGATGAAAATCTTCCACCAG+TGG | + | Chr1:36608140-36608159 | None:intergenic | 40.0% | |
| ATTTCACTCCAACACCAGTA+TGG | - | Chr1:36607389-36607408 | MsG0180002315.01.T01:CDS | 40.0% | |
| CACTAAGGTTGAAGAATCTG+GGG | + | Chr1:36606630-36606649 | None:intergenic | 40.0% | |
| CCCAAGAGGGATATAAAGTT+TGG | - | Chr1:36608033-36608052 | MsG0180002315.01.T01:intron | 40.0% | |
| CGATAGACCAAATCCAGAAA+TGG | - | Chr1:36607570-36607589 | MsG0180002315.01.T01:intron | 40.0% | |
| CTTGGTGAAAATGGACAACT+TGG | - | Chr1:36607721-36607740 | MsG0180002315.01.T01:intron | 40.0% | |
| GAAAATGGACAACTTGGTCA+TGG | - | Chr1:36607727-36607746 | MsG0180002315.01.T01:intron | 40.0% | |
| GGCAATTCTTGAACAAGTTC+AGG | + | Chr1:36607775-36607794 | None:intergenic | 40.0% | |
| TAGTGTTAGGAGAAGCAGAA+GGG | - | Chr1:36606645-36606664 | MsG0180002315.01.T01:CDS | 40.0% | |
| TCATGGTCAATTAGGCTTAG+GGG | - | Chr1:36607540-36607559 | MsG0180002315.01.T01:CDS | 40.0% | |
| TCTTGGGGTAACAACAATCA+TGG | - | Chr1:36607523-36607542 | MsG0180002315.01.T01:CDS | 40.0% | |
| TGTCCACATCAAAGCAAAGA+AGG | - | Chr1:36607346-36607365 | MsG0180002315.01.T01:CDS | 40.0% | |
| TGTGTGTTGGACATTTGTCT+TGG | - | Chr1:36607703-36607722 | MsG0180002315.01.T01:intron | 40.0% | |
| TTAGTGTTAGGAGAAGCAGA+AGG | - | Chr1:36606644-36606663 | MsG0180002315.01.T01:CDS | 40.0% | |
| TTCTGCTTCTCCTAACACTA+AGG | + | Chr1:36606645-36606664 | None:intergenic | 40.0% | |
| TTTCACTCCAACACCAGTAT+GGG | - | Chr1:36607390-36607409 | MsG0180002315.01.T01:CDS | 40.0% | |
| ! | AAAGTTTGGTCTTTCGGAAG+AGG | - | Chr1:36608047-36608066 | MsG0180002315.01.T01:intron | 40.0% |
| ! | AGAAGGGAAAGCACAACTAA+AGG | - | Chr1:36606661-36606680 | MsG0180002315.01.T01:CDS | 40.0% |
| ! | ATACTGGTGTTGGAGTGAAA+TGG | + | Chr1:36607390-36607409 | None:intergenic | 40.0% |
| ! | CTTTTACTACTGTGTGACCA+TGG | + | Chr1:36607420-36607439 | None:intergenic | 40.0% |
| ACACCAGTATGGGATTTCCA+TGG | - | Chr1:36607400-36607419 | MsG0180002315.01.T01:CDS | 45.0% | |
| ACAGTTTCCCCACATCCATA+GGG | + | Chr1:36607329-36607348 | None:intergenic | 45.0% | |
| AGAAATTATCTGGTGGGGAG+AGG | + | Chr1:36607260-36607279 | None:intergenic | 45.0% | |
| AGAGGAAGAAGTGGTGTTCT+TGG | - | Chr1:36608065-36608084 | MsG0180002315.01.T01:intron | 45.0% | |
| GAACTTAAGTGTGTTGGGAG+AGG | - | Chr1:36606957-36606976 | MsG0180002315.01.T01:CDS | 45.0% | |
| GAGTCTTCGCAAGCAAGATA+GGG | - | Chr1:36608178-36608197 | MsG0180002315.01.T01:CDS | 45.0% | |
| GGAGGCCATAACACTAAAGT+GGG | + | Chr1:36608119-36608138 | None:intergenic | 45.0% | |
| TCAATTAGGCTTAGGGGACA+CGG | - | Chr1:36607546-36607565 | MsG0180002315.01.T01:CDS | 45.0% | |
| TCTTTCGGAAGAGGAAGAAG+TGG | - | Chr1:36608056-36608075 | MsG0180002315.01.T01:intron | 45.0% | |
| TGAAAATCTTCCACCAGTGG+AGG | + | Chr1:36608137-36608156 | None:intergenic | 45.0% | |
| TGACCATGGAAATCCCATAC+TGG | + | Chr1:36607406-36607425 | None:intergenic | 45.0% | |
| TGGAAATCCCATACTGGTGT+TGG | + | Chr1:36607400-36607419 | None:intergenic | 45.0% | |
| TGGAGGCCATAACACTAAAG+TGG | + | Chr1:36608120-36608139 | None:intergenic | 45.0% | |
| TTTAGTGTTATGGCCTCCAC+TGG | - | Chr1:36608121-36608140 | MsG0180002315.01.T01:intron | 45.0% | |
| !! | ACTTGTGTTGTTTCGTCGGA+CGG | - | Chr1:36607838-36607857 | MsG0180002315.01.T01:intron | 45.0% |
| !! | GAAGGGTCTTGGTTTGTATC+CGG | - | Chr1:36607885-36607904 | MsG0180002315.01.T01:intron | 45.0% |
| !! | TTGACAATCTTGGTGCCCTA+TGG | - | Chr1:36607311-36607330 | MsG0180002315.01.T01:CDS | 45.0% |
| !!! | ATCTATTTTTTTTTTATTAA+GGG | - | Chr1:36606700-36606719 | MsG0180002315.01.T01:CDS | 5.0% |
| !!! | TATCTATTTTTTTTTTATTA+AGG | - | Chr1:36606699-36606718 | MsG0180002315.01.T01:CDS | 5.0% |
| CGAGTCTTCGCAAGCAAGAT+AGG | - | Chr1:36608177-36608196 | MsG0180002315.01.T01:CDS | 50.0% | |
| GACAGTTTCCCCACATCCAT+AGG | + | Chr1:36607330-36607349 | None:intergenic | 50.0% | |
| TCTTGCTTGCGAAGACTCGA+TGG | + | Chr1:36608176-36608195 | None:intergenic | 50.0% | |
| !! | ATCTTGGTGCCCTATGGATG+TGG | - | Chr1:36607317-36607336 | MsG0180002315.01.T01:CDS | 50.0% |
| !! | CTTGTGTTGTTTCGTCGGAC+GGG | - | Chr1:36607839-36607858 | MsG0180002315.01.T01:intron | 50.0% |
| !! | GAACCGGTTCAAGTTGCATG+TGG | - | Chr1:36607987-36608006 | MsG0180002315.01.T01:intron | 50.0% |
| !! | TCTTGGTGCCCTATGGATGT+GGG | - | Chr1:36607318-36607337 | MsG0180002315.01.T01:CDS | 50.0% |
| !! | TTGTGTTGTTTCGTCGGACG+GGG | - | Chr1:36607840-36607859 | MsG0180002315.01.T01:intron | 50.0% |
| AGTGTTATGGCCTCCACTGG+TGG | - | Chr1:36608124-36608143 | MsG0180002315.01.T01:intron | 55.0% | |
| GCGCCACATGCAACTTGAAC+CGG | + | Chr1:36607993-36608012 | None:intergenic | 55.0% | |
| GGATGTTTGGTCGTGGGGAA+TGG | - | Chr1:36607861-36607880 | MsG0180002315.01.T01:intron | 55.0% | |
| TGGGGAATGGAGAAGGGTCT+TGG | - | Chr1:36607874-36607893 | MsG0180002315.01.T01:intron | 55.0% | |
| TGGTCGTGGGGAATGGAGAA+GGG | - | Chr1:36607868-36607887 | MsG0180002315.01.T01:intron | 55.0% | |
| TTCACCAACACTCGCGCATC+CGG | + | Chr1:36607907-36607926 | None:intergenic | 55.0% | |
| TTGGTCGTGGGGAATGGAGA+AGG | - | Chr1:36607867-36607886 | MsG0180002315.01.T01:intron | 55.0% | |
| TTTCGTCGGACGGGGATGTT+TGG | - | Chr1:36607848-36607867 | MsG0180002315.01.T01:intron | 55.0% | |
| !! | CTTGGTGCCCTATGGATGTG+GGG | - | Chr1:36607319-36607338 | MsG0180002315.01.T01:CDS | 55.0% |
| !! | GGTTCAAGTTGCATGTGGCG+CGG | - | Chr1:36607992-36608011 | MsG0180002315.01.T01:intron | 55.0% |
| GACGGGGATGTTTGGTCGTG+GGG | - | Chr1:36607856-36607875 | MsG0180002315.01.T01:intron | 60.0% | |
| GGACGGGGATGTTTGGTCGT+GGG | - | Chr1:36607855-36607874 | MsG0180002315.01.T01:intron | 60.0% | |
| GTATCCGGATGCGCGAGTGT+TGG | - | Chr1:36607900-36607919 | MsG0180002315.01.T01:intron | 60.0% | |
| CGGACGGGGATGTTTGGTCG+TGG | - | Chr1:36607854-36607873 | MsG0180002315.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 36606512 | 36608340 | 36606512 | ID=MsG0180002315.01;Name=MsG0180002315.01 |
| Chr1 | mRNA | 36606512 | 36608340 | 36606512 | ID=MsG0180002315.01.T01;Parent=MsG0180002315.01;Name=MsG0180002315.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.33|0|1|1|1|4|0|356 |
| Chr1 | exon | 36608170 | 36608340 | 36608170 | ID=MsG0180002315.01.T01:exon:117;Parent=MsG0180002315.01.T01 |
| Chr1 | exon | 36607261 | 36607581 | 36607261 | ID=MsG0180002315.01.T01:exon:118;Parent=MsG0180002315.01.T01 |
| Chr1 | exon | 36606937 | 36607149 | 36606937 | ID=MsG0180002315.01.T01:exon:119;Parent=MsG0180002315.01.T01 |
| Chr1 | exon | 36606512 | 36606877 | 36606512 | ID=MsG0180002315.01.T01:exon:120;Parent=MsG0180002315.01.T01 |
| Chr1 | CDS | 36608170 | 36608340 | 36608170 | ID=MsG0180002315.01.T01:cds;Parent=MsG0180002315.01.T01 |
| Chr1 | CDS | 36607261 | 36607581 | 36607261 | ID=MsG0180002315.01.T01:cds;Parent=MsG0180002315.01.T01 |
| Chr1 | CDS | 36606937 | 36607149 | 36606937 | ID=MsG0180002315.01.T01:cds;Parent=MsG0180002315.01.T01 |
| Chr1 | CDS | 36606512 | 36606877 | 36606512 | ID=MsG0180002315.01.T01:cds;Parent=MsG0180002315.01.T01 |
| Gene Sequence |
| Protein sequence |
