Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031692.01.T01 | XP_003618953.1 | 92.373 | 236 | 10 | 1 | 1 | 236 | 1 | 228 | 1.31E-149 | 426 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031692.01.T01 | B7FJV5 | 92.373 | 236 | 10 | 1 | 1 | 236 | 1 | 228 | 6.27e-150 | 426 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048073.01 | MsG0680031692.01 | 0.820933 | 5.278812e-53 | 4.234837e-50 |
| MsG0180000086.01 | MsG0680031692.01 | 0.819780 | 9.701750e-53 | 7.537794e-50 |
| MsG0180000291.01 | MsG0680031692.01 | 0.821487 | 3.933527e-53 | 3.204504e-50 |
| MsG0180001149.01 | MsG0680031692.01 | 0.833685 | 4.626628e-56 | 5.367485e-53 |
| MsG0180001888.01 | MsG0680031692.01 | 0.835691 | 1.447847e-56 | 1.784110e-53 |
| MsG0180002322.01 | MsG0680031692.01 | 0.804540 | 2.056905e-49 | 1.063312e-46 |
| MsG0180004025.01 | MsG0680031692.01 | 0.811545 | 6.634722e-51 | 4.118666e-48 |
| MsG0280010945.01 | MsG0680031692.01 | 0.842253 | 2.894816e-58 | 4.363641e-55 |
| MsG0380011895.01 | MsG0680031692.01 | 0.804381 | 2.219907e-49 | 1.142930e-46 |
| MsG0680031334.01 | MsG0680031692.01 | 0.881488 | 2.303165e-70 | 1.352003e-66 |
| MsG0680031375.01 | MsG0680031692.01 | 0.812927 | 3.314458e-51 | 2.134569e-48 |
| MsG0680031692.01 | MsG0780037105.01 | 0.848727 | 5.098574e-60 | 9.445762e-57 |
| MsG0680031692.01 | MsG0780037848.01 | 0.824002 | 1.021936e-53 | 8.939650e-51 |
| MsG0680031692.01 | MsG0780038783.01 | 0.800955 | 1.130226e-48 | 5.332389e-46 |
| MsG0680031692.01 | MsG0780040177.01 | 0.889409 | 2.486532e-73 | 2.003928e-69 |
| MsG0680031692.01 | MsG0780041080.01 | 0.829527 | 4.897516e-55 | 5.025366e-52 |
| MsG0680031692.01 | MsG0780041626.01 | 0.865722 | 4.805894e-65 | 1.579553e-61 |
| MsG0680031692.01 | MsG0880041852.01 | 0.801343 | 9.417768e-49 | 4.486816e-46 |
| MsG0680031692.01 | MsG0880043829.01 | 0.805566 | 1.254913e-49 | 6.660823e-47 |
| MsG0680031692.01 | MsG0880043867.01 | 0.807704 | 4.438800e-50 | 2.489470e-47 |
| MsG0680031692.01 | MsG0880045285.01 | 0.818841 | 1.588025e-52 | 1.202047e-49 |
| MsG0680031692.01 | MsG0880045783.01 | 0.854508 | 1.175169e-61 | 2.630648e-58 |
| MsG0680031692.01 | MsG0880046471.01 | 0.851087 | 1.115187e-60 | 2.231423e-57 |
| MsG0480018995.01 | MsG0680031692.01 | 0.807716 | 4.412770e-50 | 2.475662e-47 |
| MsG0480019384.01 | MsG0680031692.01 | 0.801466 | 8.885210e-49 | 4.246206e-46 |
| MsG0480020322.01 | MsG0680031692.01 | 0.858271 | 9.237383e-63 | 2.344347e-59 |
| MsG0480020323.01 | MsG0680031692.01 | 0.857202 | 1.916177e-62 | 4.691872e-59 |
| MsG0480021690.01 | MsG0680031692.01 | 0.806793 | 6.922132e-50 | 3.791510e-47 |
| MsG0480022739.01 | MsG0680031692.01 | -0.805895 | 1.070289e-49 | 5.729286e-47 |
| MsG0480023370.01 | MsG0680031692.01 | 0.856147 | 3.915968e-62 | 9.256160e-59 |
| MsG0580024775.01 | MsG0680031692.01 | 0.812599 | 3.909301e-51 | 2.496135e-48 |
| MsG0580024872.01 | MsG0680031692.01 | 0.803196 | 3.912393e-49 | 1.953899e-46 |
| MsG0580024935.01 | MsG0680031692.01 | 0.825549 | 4.412523e-54 | 4.034531e-51 |
| MsG0580025280.01 | MsG0680031692.01 | 0.828992 | 6.604699e-55 | 6.671018e-52 |
| MsG0580026032.01 | MsG0680031692.01 | 0.801812 | 7.546703e-49 | 3.638301e-46 |
| MsG0380016182.01 | MsG0680031692.01 | 0.839787 | 1.285940e-57 | 1.794993e-54 |
| MsG0380017793.01 | MsG0680031692.01 | 0.804943 | 1.694723e-49 | 8.853236e-47 |
| MsG0680030636.01 | MsG0680031692.01 | 0.826357 | 2.835382e-54 | 2.653046e-51 |
| MsG0280007417.01 | MsG0680031692.01 | 0.803600 | 3.226098e-49 | 1.628011e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031692.01.T01 | MTR_6g029250 | 92.373 | 236 | 10 | 1 | 1 | 236 | 1 | 228 | 1.59e-153 | 426 |
| MsG0680031692.01.T01 | MTR_7g085790 | 48.077 | 260 | 98 | 9 | 1 | 233 | 1 | 250 | 2.01e-66 | 206 |
| MsG0680031692.01.T01 | MTR_7g085790 | 44.800 | 250 | 82 | 10 | 1 | 233 | 1 | 211 | 7.86e-55 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031692.01.T01 | AT3G03870 | 36.462 | 277 | 119 | 15 | 1 | 233 | 1 | 264 | 2.30e-30 | 114 |
| MsG0680031692.01.T01 | AT5G18130 | 41.040 | 173 | 64 | 7 | 91 | 233 | 114 | 278 | 6.15e-29 | 110 |
| MsG0680031692.01.T01 | AT3G03870 | 32.231 | 242 | 108 | 14 | 1 | 199 | 1 | 229 | 6.30e-14 | 69.3 |
| MsG0680031692.01.T01 | AT5G18130 | 34.752 | 141 | 55 | 6 | 91 | 202 | 114 | 246 | 7.16e-13 | 66.6 |
Find 57 sgRNAs with CRISPR-Local
Find 100 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTCCAAGAGGGTGATTT+TGG | 0.133156 | 6:-24687791 | None:intergenic |
| GTTATGTGAGCTCTTGTTAT+TGG | 0.194388 | 6:-24689200 | None:intergenic |
| AAAGATGGAGATGGCTTTCT+AGG | 0.223368 | 6:-24687671 | None:intergenic |
| AAGATTAAGGAAAATGAAAT+TGG | 0.238321 | 6:+24688090 | MsG0680031692.01.T01:CDS |
| TCTTTCTCAATAATCATTCT+TGG | 0.258263 | 6:-24688168 | None:intergenic |
| AGTTGGAGTTTCAAAATATT+AGG | 0.269399 | 6:-24687715 | None:intergenic |
| GAAACATTTGGAGTATATAA+TGG | 0.276998 | 6:+24689276 | MsG0680031692.01.T01:three_prime_UTR |
| GTTGGTGCTATTTGCACTTT+TGG | 0.279828 | 6:+24688276 | MsG0680031692.01.T01:CDS |
| TGGTGGTTGATAAATAAATT+AGG | 0.280504 | 6:+24689523 | MsG0680031692.01.T01:three_prime_UTR |
| ATTATTGAGAAAGATGATTT+TGG | 0.285258 | 6:+24688177 | MsG0680031692.01.T01:CDS |
| TAACACTTCAAATGATGTTA+TGG | 0.353998 | 6:+24687999 | MsG0680031692.01.T01:CDS |
| CAGTACAAGGATGAGCAATA+AGG | 0.360813 | 6:-24689371 | None:intergenic |
| TTACCAAGTTTGAGGTCTAA+TGG | 0.382258 | 6:-24687979 | None:intergenic |
| GTAAGAGCAAGCTACTATTA+AGG | 0.383534 | 6:-24687632 | None:intergenic |
| TTTATTGAATTAATTAAAGA+TGG | 0.385433 | 6:-24687686 | None:intergenic |
| AAACATTTGGAGTATATAAT+GGG | 0.401708 | 6:+24689277 | MsG0680031692.01.T01:three_prime_UTR |
| AGAGAATTAGAGATTATATA+TGG | 0.405358 | 6:-24689402 | None:intergenic |
| GAAGCAATTTCTGTTGTAAG+AGG | 0.414220 | 6:+24689173 | MsG0680031692.01.T01:CDS |
| AAGTTCCTTCATGAAACATT+TGG | 0.421762 | 6:+24689264 | MsG0680031692.01.T01:three_prime_UTR |
| TTGAAGTGTTACCAAGTTTG+AGG | 0.426516 | 6:-24687987 | None:intergenic |
| GGTCTAATGGAATTTGTAAA+GGG | 0.426783 | 6:-24687966 | None:intergenic |
| ATATAATCTCTAATTCTCTA+TGG | 0.428639 | 6:+24689406 | MsG0680031692.01.T01:three_prime_UTR |
| TTATGGAAGTGGAGTCTTAG+TGG | 0.435150 | 6:+24688252 | MsG0680031692.01.T01:CDS |
| TCTTTACTACTACTTGACTT+TGG | 0.442062 | 6:-24688132 | None:intergenic |
| ATAAGTAAATAAATAAAAGT+TGG | 0.444781 | 6:-24687732 | None:intergenic |
| TGGGAAGAAGAGAATAATAG+TGG | 0.445840 | 6:+24688222 | MsG0680031692.01.T01:CDS |
| AAAATCCAAAATCACCCTCT+TGG | 0.447623 | 6:+24687786 | MsG0680031692.01.T01:five_prime_UTR |
| AGGTCTAATGGAATTTGTAA+AGG | 0.463571 | 6:-24687967 | None:intergenic |
| AGTACAAGGATGAGCAATAA+GGG | 0.464777 | 6:-24689370 | None:intergenic |
| TTCAGAAGGATCAGAAGAAT+AGG | 0.469303 | 6:+24688355 | MsG0680031692.01.T01:CDS |
| CAAAATCACCCTCTTGGAGA+TGG | 0.481333 | 6:+24687792 | MsG0680031692.01.T01:exon |
| CAAAGAAGATGATTCAAGTT+GGG | 0.482479 | 6:+24688203 | MsG0680031692.01.T01:CDS |
| TGGAGATGGATCTTGATGAA+TGG | 0.483700 | 6:+24687806 | MsG0680031692.01.T01:exon |
| GAATTTGTAAAGGGACAAGT+TGG | 0.486114 | 6:-24687957 | None:intergenic |
| ACAAAGAAGATGATTCAAGT+TGG | 0.487890 | 6:+24688202 | MsG0680031692.01.T01:CDS |
| GGAGATGGATCTTGATGAAT+GGG | 0.498676 | 6:+24687807 | MsG0680031692.01.T01:exon |
| ATTCCATTAGACCTCAAACT+TGG | 0.502699 | 6:+24687976 | MsG0680031692.01.T01:CDS |
| TATATTGATTTCAATGAAGA+TGG | 0.511704 | 6:+24687850 | MsG0680031692.01.T01:CDS |
| AAGCAATTTCTGTTGTAAGA+GGG | 0.518875 | 6:+24689174 | MsG0680031692.01.T01:CDS |
| GAATTAATTAAAGATGGAGA+TGG | 0.545724 | 6:-24687680 | None:intergenic |
| AAACTATGTCATGTAGCTCA+TGG | 0.549041 | 6:+24687609 | None:intergenic |
| ATACTCCAAATGTTTCATGA+AGG | 0.553038 | 6:-24689269 | None:intergenic |
| AGAGCTCACATAACAGTTGG+TGG | 0.559551 | 6:+24689209 | MsG0680031692.01.T01:CDS |
| AGCAATTTCTGTTGTAAGAG+GGG | 0.561387 | 6:+24689175 | MsG0680031692.01.T01:CDS |
| ATTTCAGAGGATTAAGCAAG+TGG | 0.575069 | 6:+24689127 | MsG0680031692.01.T01:intron |
| AAGTGGAGTCTTAGTGGTGT+TGG | 0.575334 | 6:+24688258 | MsG0680031692.01.T01:CDS |
| ACAAGAGCTCACATAACAGT+TGG | 0.586253 | 6:+24689206 | MsG0680031692.01.T01:CDS |
| TGGGAATCAATCTCTAGTGA+TGG | 0.593054 | 6:+24687826 | MsG0680031692.01.T01:CDS |
| GAGTTTCAAAATATTAGGTG+AGG | 0.595658 | 6:-24687710 | None:intergenic |
| ATCAGAAAGTGCTTTAGACA+TGG | 0.600275 | 6:+24687900 | MsG0680031692.01.T01:CDS |
| TGTTCTTTGGAAGCCAACAA+AGG | 0.602238 | 6:+24688325 | MsG0680031692.01.T01:CDS |
| ATCAAGATCCATCTCCAAGA+GGG | 0.609806 | 6:-24687800 | None:intergenic |
| TATGGTATATATACAGTACA+AGG | 0.627341 | 6:-24689384 | None:intergenic |
| TCAAATATATGCTGATGACA+AGG | 0.643734 | 6:+24688380 | MsG0680031692.01.T01:CDS |
| AATTATGTCACAAACTATAG+CGG | 0.644307 | 6:+24689436 | MsG0680031692.01.T01:three_prime_UTR |
| GAGTATATAATGGGAAACAG+TGG | 0.673484 | 6:+24689286 | MsG0680031692.01.T01:three_prime_UTR |
| CATCAAGATCCATCTCCAAG+AGG | 0.699790 | 6:-24687801 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGTAAATAAATAAAAGT+TGG | - | Chr6:24687735-24687754 | None:intergenic | 10.0% |
| !! | TTTATTGAATTAATTAAAGA+TGG | - | Chr6:24687689-24687708 | None:intergenic | 10.0% |
| !!! | AATTTTTTTGATTAATAGTA+CGG | + | Chr6:24688460-24688479 | MsG0680031692.01.T01:intron | 10.0% |
| !!! | CAAATCATATATTTATTTTT+TGG | + | Chr6:24688423-24688442 | MsG0680031692.01.T01:intron | 10.0% |
| !! | TAAATCATTTATACTAAATC+AGG | - | Chr6:24688528-24688547 | None:intergenic | 15.0% |
| !!! | ATAATAGTGGTTTTAATTTA+TGG | + | Chr6:24688235-24688254 | MsG0680031692.01.T01:CDS | 15.0% |
| !!! | GTTTTTATTAGCATTAATTT+TGG | + | Chr6:24689503-24689522 | MsG0680031692.01.T01:three_prime_UTR | 15.0% |
| !!! | TTTCTTATTTTCAAGTATAT+TGG | - | Chr6:24688621-24688640 | None:intergenic | 15.0% |
| !!! | TTTTTGATTAGTATAGTAAA+TGG | - | Chr6:24687770-24687789 | None:intergenic | 15.0% |
| !! | AAGATTAAGGAAAATGAAAT+TGG | + | Chr6:24688090-24688109 | MsG0680031692.01.T01:CDS | 20.0% |
| !! | AGAGAATTAGAGATTATATA+TGG | - | Chr6:24689405-24689424 | None:intergenic | 20.0% |
| !! | ATATAATCTCTAATTCTCTA+TGG | + | Chr6:24689406-24689425 | MsG0680031692.01.T01:three_prime_UTR | 20.0% |
| !!! | AAACATTTGGAGTATATAAT+GGG | + | Chr6:24689277-24689296 | MsG0680031692.01.T01:three_prime_UTR | 20.0% |
| !!! | ACAAGTTTTCTTTAAGATTA+AGG | + | Chr6:24688077-24688096 | MsG0680031692.01.T01:CDS | 20.0% |
| !!! | ATTATTGAGAAAGATGATTT+TGG | + | Chr6:24688177-24688196 | MsG0680031692.01.T01:CDS | 20.0% |
| !!! | ATTGATTCGTAGAAAAAATA+TGG | - | Chr6:24688945-24688964 | None:intergenic | 20.0% |
| !!! | TATATTGATTTCAATGAAGA+TGG | + | Chr6:24687850-24687869 | MsG0680031692.01.T01:CDS | 20.0% |
| !!! | TTTATTAGCATTAATTTTGG+TGG | + | Chr6:24689506-24689525 | MsG0680031692.01.T01:three_prime_UTR | 20.0% |
| !!! | TTTTAGTCATTATGTTGTTA+AGG | + | Chr6:24688674-24688693 | MsG0680031692.01.T01:intron | 20.0% |
| ! | AAAAAAAGTTTCCTAGGAAA+AGG | + | Chr6:24687877-24687896 | MsG0680031692.01.T01:CDS | 25.0% |
| ! | AATTATGTCACAAACTATAG+CGG | + | Chr6:24689436-24689455 | MsG0680031692.01.T01:three_prime_UTR | 25.0% |
| ! | AGTTGGAGTTTCAAAATATT+AGG | - | Chr6:24687718-24687737 | None:intergenic | 25.0% |
| ! | CTTTATAGTTGAAGAAATTG+TGG | + | Chr6:24688757-24688776 | MsG0680031692.01.T01:intron | 25.0% |
| ! | GAATTAATTAAAGATGGAGA+TGG | - | Chr6:24687683-24687702 | None:intergenic | 25.0% |
| ! | TAACACTTCAAATGATGTTA+TGG | + | Chr6:24687999-24688018 | MsG0680031692.01.T01:CDS | 25.0% |
| ! | TATGGTATATATACAGTACA+AGG | - | Chr6:24689387-24689406 | None:intergenic | 25.0% |
| ! | TCATAATCTATTGAAGATTC+TGG | - | Chr6:24689074-24689093 | None:intergenic | 25.0% |
| ! | TCTTTCTCAATAATCATTCT+TGG | - | Chr6:24688171-24688190 | None:intergenic | 25.0% |
| ! | TTATACTAAATCAGGTTCTT+CGG | - | Chr6:24688520-24688539 | None:intergenic | 25.0% |
| ! | TTTAGTATAGAATTGTGTCA+AGG | + | Chr6:24688569-24688588 | MsG0680031692.01.T01:intron | 25.0% |
| ! | TTTATAATAACTCTAACCCT+TGG | + | Chr6:24689099-24689118 | MsG0680031692.01.T01:intron | 25.0% |
| !! | GAAACATTTGGAGTATATAA+TGG | + | Chr6:24689276-24689295 | MsG0680031692.01.T01:three_prime_UTR | 25.0% |
| !! | GCGGATTTTACATTATTATT+TGG | + | Chr6:24689455-24689474 | MsG0680031692.01.T01:three_prime_UTR | 25.0% |
| !!! | AGAAAAAAGTGTTAACTTTG+AGG | + | Chr6:24689048-24689067 | MsG0680031692.01.T01:intron | 25.0% |
| !!! | AGTTAACACTTTTTTCTCTA+TGG | - | Chr6:24689045-24689064 | None:intergenic | 25.0% |
| !!! | TCTATTTGTGTTTTGTTCTT+TGG | + | Chr6:24688312-24688331 | MsG0680031692.01.T01:CDS | 25.0% |
| !!! | TGGTGGTTGATAAATAAATT+AGG | + | Chr6:24689523-24689542 | MsG0680031692.01.T01:three_prime_UTR | 25.0% |
| AAGCAATTTCTGTTGTAAGA+GGG | + | Chr6:24689174-24689193 | MsG0680031692.01.T01:CDS | 30.0% | |
| AAGTTCCTTCATGAAACATT+TGG | + | Chr6:24689264-24689283 | MsG0680031692.01.T01:three_prime_UTR | 30.0% | |
| AATTGTGGAACTACAATCAA+CGG | + | Chr6:24688772-24688791 | MsG0680031692.01.T01:intron | 30.0% | |
| ACAAAGAAGATGATTCAAGT+TGG | + | Chr6:24688202-24688221 | MsG0680031692.01.T01:CDS | 30.0% | |
| ACAAAGGAAAAAACTTCAGA+AGG | + | Chr6:24688341-24688360 | MsG0680031692.01.T01:CDS | 30.0% | |
| AGGTCTAATGGAATTTGTAA+AGG | - | Chr6:24687970-24687989 | None:intergenic | 30.0% | |
| ATACTCCAAATGTTTCATGA+AGG | - | Chr6:24689272-24689291 | None:intergenic | 30.0% | |
| GACAAGGTTAGTAAATTTCT+TGG | + | Chr6:24688396-24688415 | MsG0680031692.01.T01:intron | 30.0% | |
| GAGTTTCAAAATATTAGGTG+AGG | - | Chr6:24687713-24687732 | None:intergenic | 30.0% | |
| GGTCTAATGGAATTTGTAAA+GGG | - | Chr6:24687969-24687988 | None:intergenic | 30.0% | |
| TCAAATATATGCTGATGACA+AGG | + | Chr6:24688380-24688399 | MsG0680031692.01.T01:CDS | 30.0% | |
| TCTACGAATCAATACGATAA+GGG | + | Chr6:24688952-24688971 | MsG0680031692.01.T01:intron | 30.0% | |
| TCTTTACTACTACTTGACTT+TGG | - | Chr6:24688135-24688154 | None:intergenic | 30.0% | |
| TTCTACGAATCAATACGATA+AGG | + | Chr6:24688951-24688970 | MsG0680031692.01.T01:intron | 30.0% | |
| TTGTTAAGGCTGTAATTACA+TGG | + | Chr6:24688688-24688707 | MsG0680031692.01.T01:intron | 30.0% | |
| ! | CAAAGAAGATGATTCAAGTT+GGG | + | Chr6:24688203-24688222 | MsG0680031692.01.T01:CDS | 30.0% |
| ! | CTGTAATTACATGGTAGTTT+TGG | + | Chr6:24688697-24688716 | MsG0680031692.01.T01:intron | 30.0% |
| !!! | ACAAGTTGGTTTTGTTTTCT+TGG | - | Chr6:24687946-24687965 | None:intergenic | 30.0% |
| !!! | GTGGTTTTAATTTATGGAAG+TGG | + | Chr6:24688241-24688260 | MsG0680031692.01.T01:CDS | 30.0% |
| !!! | TCTGAAGTTTTTTCCTTTGT+TGG | - | Chr6:24688341-24688360 | None:intergenic | 30.0% |
| AAAATCCAAAATCACCCTCT+TGG | + | Chr6:24687786-24687805 | MsG0680031692.01.T01:five_prime_UTR | 35.0% | |
| AGCAATTTCTGTTGTAAGAG+GGG | + | Chr6:24689175-24689194 | MsG0680031692.01.T01:CDS | 35.0% | |
| AGTACAAGGATGAGCAATAA+GGG | - | Chr6:24689373-24689392 | None:intergenic | 35.0% | |
| ATTCCATTAGACCTCAAACT+TGG | + | Chr6:24687976-24687995 | MsG0680031692.01.T01:CDS | 35.0% | |
| ATTGTGGAACTACAATCAAC+GGG | + | Chr6:24688773-24688792 | MsG0680031692.01.T01:intron | 35.0% | |
| ATTTCAGAGGATTAAGCAAG+TGG | + | Chr6:24689127-24689146 | MsG0680031692.01.T01:intron | 35.0% | |
| GAAGCAATTTCTGTTGTAAG+AGG | + | Chr6:24689173-24689192 | MsG0680031692.01.T01:CDS | 35.0% | |
| GAATTTGTAAAGGGACAAGT+TGG | - | Chr6:24687960-24687979 | None:intergenic | 35.0% | |
| GATAAGGGACTGAATATAAG+TGG | + | Chr6:24688967-24688986 | MsG0680031692.01.T01:intron | 35.0% | |
| GGTGAGAAAAAAAGTTTCCT+AGG | + | Chr6:24687871-24687890 | MsG0680031692.01.T01:CDS | 35.0% | |
| GTAAGAGCAAGCTACTATTA+AGG | - | Chr6:24687635-24687654 | None:intergenic | 35.0% | |
| TGGGAAGAAGAGAATAATAG+TGG | + | Chr6:24688222-24688241 | MsG0680031692.01.T01:CDS | 35.0% | |
| TTCAGAAGGATCAGAAGAAT+AGG | + | Chr6:24688355-24688374 | MsG0680031692.01.T01:CDS | 35.0% | |
| TTTGGAGACTCATGAAATCT+TGG | + | Chr6:24688715-24688734 | MsG0680031692.01.T01:intron | 35.0% | |
| ! | CTTGTGACACATTTTCTTCT+TGG | - | Chr6:24688062-24688081 | None:intergenic | 35.0% |
| ! | GAGTATATAATGGGAAACAG+TGG | + | Chr6:24689286-24689305 | MsG0680031692.01.T01:three_prime_UTR | 35.0% |
| ! | GTTATGTGAGCTCTTGTTAT+TGG | - | Chr6:24689203-24689222 | None:intergenic | 35.0% |
| ! | TTACCAAGTTTGAGGTCTAA+TGG | - | Chr6:24687982-24688001 | None:intergenic | 35.0% |
| ! | TTGAAGTGTTACCAAGTTTG+AGG | - | Chr6:24687990-24688009 | None:intergenic | 35.0% |
| !! | ATCAGAAAGTGCTTTAGACA+TGG | + | Chr6:24687900-24687919 | MsG0680031692.01.T01:CDS | 35.0% |
| !! | ATCCTCTGAAATCAAAACCA+AGG | - | Chr6:24689119-24689138 | None:intergenic | 35.0% |
| !! | TCCTCTGAAATCAAAACCAA+GGG | - | Chr6:24689118-24689137 | None:intergenic | 35.0% |
| !!! | AGTTGGTTTTGTTTTCTTGG+TGG | - | Chr6:24687943-24687962 | None:intergenic | 35.0% |
| !!! | TTTTGTTTTCTTGGTGGTGA+AGG | - | Chr6:24687937-24687956 | None:intergenic | 35.0% |
| AAAGATGGAGATGGCTTTCT+AGG | - | Chr6:24687674-24687693 | None:intergenic | 40.0% | |
| ACAAGAGCTCACATAACAGT+TGG | + | Chr6:24689206-24689225 | MsG0680031692.01.T01:CDS | 40.0% | |
| ATCAAGATCCATCTCCAAGA+GGG | - | Chr6:24687803-24687822 | None:intergenic | 40.0% | |
| CAGTACAAGGATGAGCAATA+AGG | - | Chr6:24689374-24689393 | None:intergenic | 40.0% | |
| GACTGAATATAAGTGGATCG+TGG | + | Chr6:24688974-24688993 | MsG0680031692.01.T01:intron | 40.0% | |
| GGAGATGGATCTTGATGAAT+GGG | + | Chr6:24687807-24687826 | MsG0680031692.01.T01:exon | 40.0% | |
| TGGAGATGGATCTTGATGAA+TGG | + | Chr6:24687806-24687825 | MsG0680031692.01.T01:exon | 40.0% | |
| TGGGAATCAATCTCTAGTGA+TGG | + | Chr6:24687826-24687845 | MsG0680031692.01.T01:CDS | 40.0% | |
| TTATGGAAGTGGAGTCTTAG+TGG | + | Chr6:24688252-24688271 | MsG0680031692.01.T01:CDS | 40.0% | |
| ! | CACTTTCTGATCCTTTTCCT+AGG | - | Chr6:24687891-24687910 | None:intergenic | 40.0% |
| ! | TGTTCTTTGGAAGCCAACAA+AGG | + | Chr6:24688325-24688344 | MsG0680031692.01.T01:CDS | 40.0% |
| !!! | ACCCTTGGTTTTGATTTCAG+AGG | + | Chr6:24689114-24689133 | MsG0680031692.01.T01:intron | 40.0% |
| !!! | GTTGGTGCTATTTGCACTTT+TGG | + | Chr6:24688276-24688295 | MsG0680031692.01.T01:CDS | 40.0% |
| AAGTGGAGTCTTAGTGGTGT+TGG | + | Chr6:24688258-24688277 | MsG0680031692.01.T01:CDS | 45.0% | |
| AGAGCTCACATAACAGTTGG+TGG | + | Chr6:24689209-24689228 | MsG0680031692.01.T01:CDS | 45.0% | |
| CAAAATCACCCTCTTGGAGA+TGG | + | Chr6:24687792-24687811 | MsG0680031692.01.T01:exon | 45.0% | |
| CATCAAGATCCATCTCCAAG+AGG | - | Chr6:24687804-24687823 | None:intergenic | 45.0% | |
| ! | CATCTCCAAGAGGGTGATTT+TGG | - | Chr6:24687794-24687813 | None:intergenic | 45.0% |
| !! | TAAATTATAGAAAATTATAT+TGG | + | Chr6:24688546-24688565 | MsG0680031692.01.T01:intron | 5.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 24687621 | 24689575 | 24687621 | ID=MsG0680031692.01;Name=MsG0680031692.01 |
| Chr6 | mRNA | 24687621 | 24689575 | 24687621 | ID=MsG0680031692.01.T01;Parent=MsG0680031692.01;Name=MsG0680031692.01.T01;_AED=0.43;_eAED=0.43;_QI=190|1|1|1|1|1|2|322|236 |
| Chr6 | exon | 24687621 | 24688401 | 24687621 | ID=MsG0680031692.01.T01:exon:15285;Parent=MsG0680031692.01.T01 |
| Chr6 | exon | 24689134 | 24689575 | 24689134 | ID=MsG0680031692.01.T01:exon:15286;Parent=MsG0680031692.01.T01 |
| Chr6 | five_prime_UTR | 24687621 | 24687810 | 24687621 | ID=MsG0680031692.01.T01:five_prime_utr;Parent=MsG0680031692.01.T01 |
| Chr6 | CDS | 24687811 | 24688401 | 24687811 | ID=MsG0680031692.01.T01:cds;Parent=MsG0680031692.01.T01 |
| Chr6 | CDS | 24689134 | 24689253 | 24689134 | ID=MsG0680031692.01.T01:cds;Parent=MsG0680031692.01.T01 |
| Chr6 | three_prime_UTR | 24689254 | 24689575 | 24689254 | ID=MsG0680031692.01.T01:three_prime_utr;Parent=MsG0680031692.01.T01 |
| Gene Sequence |
| Protein sequence |
