AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180002398.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002398.01.T01 MTR_0004s0600 95.473 243 9 1 1 241 1 243 7.26e-172 473
MsG0180002398.01.T01 MTR_1g051215 95.473 243 9 1 1 241 1 243 5.47e-171 471
MsG0180002398.01.T01 MTR_0004s0600 94.634 205 9 1 1 203 1 205 5.64e-141 393
MsG0180002398.01.T01 MTR_0004s0600 93.750 160 8 1 1 158 1 160 5.84e-106 303
MsG0180002398.01.T01 MTR_0004s0600 93.789 161 8 1 1 159 1 161 7.47e-106 303
MsG0180002398.01.T01 MTR_1g051215 93.750 160 8 1 1 158 1 160 3.27e-104 299
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180002398.01.T01 AT3G10220 70.370 243 70 1 1 241 1 243 1.85e-127 360

Find 94 sgRNAs with CRISPR-Local

Find 360 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCACTGGGTCCTGGTTTC+TGG -0.037021 1:+37996523 MsG0180002398.01.T01:CDS
TCTGATCATTCCAAACTTCT+TGG 0.199488 1:+37993750 MsG0180002398.01.T01:CDS
TTTGGCAAACTTACTCTTAC+TGG 0.233009 1:+37997462 MsG0180002398.01.T01:three_prime_UTR
ATGAAATTTGAGTCTTAATA+AGG 0.248997 1:+37997369 MsG0180002398.01.T01:exon
GGATTCTATTCTCCCTTTGA+TGG 0.273533 1:+37993771 MsG0180002398.01.T01:CDS
CATGCCTCCTCGCTTATTAT+AGG 0.307300 1:-37993987 None:intergenic
ATCACTGGGTCCTGGTTTCT+GGG 0.312723 1:+37996524 MsG0180002398.01.T01:CDS
TCTTCGAAGGGATCTCGTTC+AGG 0.312869 1:-37997344 None:intergenic
GAGTGAATCAAATTAGTAAA+TGG 0.335962 1:+37993518 MsG0180002398.01.T01:exon
AGAATAGAATCCAAGAAGTT+TGG 0.338999 1:-37993760 None:intergenic
TAACAAACCTTCACTTTCTC+TGG 0.347241 1:-37996794 None:intergenic
CTGCTTCCACTGTGAGCTGC+AGG 0.369768 1:-37993635 None:intergenic
TGCAGGGAGAAGCGAATGTC+GGG 0.371190 1:-37993618 None:intergenic
AGAGGTGTTGTAAAATTTGT+TGG 0.372773 1:+37996492 MsG0180002398.01.T01:CDS
CAGACACTTTCAGAAAATAT+CGG 0.377481 1:+37994105 MsG0180002398.01.T01:intron
CTGGGTCCTGGTTTCTGGGT+TGG 0.386951 1:+37996528 MsG0180002398.01.T01:CDS
CGATGCGTCAAACAGAAATC+AGG 0.390793 1:-37991572 None:intergenic
TGTTGGTCAGGCAGAATCAC+TGG 0.406642 1:+37996509 MsG0180002398.01.T01:CDS
CCCAGGTTCAACTTCACATC+TGG 0.407312 1:-37996463 None:intergenic
GATTCTATTCTCCCTTTGAT+GGG 0.422721 1:+37993772 MsG0180002398.01.T01:CDS
TGTTGTAAAATTTGTTGGTC+AGG 0.432361 1:+37996497 MsG0180002398.01.T01:CDS
ATGGTTGGAAGATACTTCTT+TGG 0.437085 1:+37993937 MsG0180002398.01.T01:CDS
AGACATCTGTGCTAATTTCA+AGG 0.454683 1:+37994962 MsG0180002398.01.T01:CDS
TTACTCTTACTGGCCTTTCA+AGG 0.456980 1:+37997472 MsG0180002398.01.T01:three_prime_UTR
CCCCGTGCGATGGAGGGCAT+TGG 0.467858 1:-37996760 None:intergenic
TCCAGATGTGAAGTTGAACC+TGG 0.472716 1:+37996462 MsG0180002398.01.T01:CDS
CCTTGTGTAGGAAGAAAACA+TGG 0.474099 1:+37997562 MsG0180002398.01.T01:three_prime_UTR
GTTGGAAGATACTTCTTTGG+TGG 0.474707 1:+37993940 MsG0180002398.01.T01:CDS
TTATTACAGAAAACTAAAAC+CGG 0.477775 1:+37991428 MsG0180002398.01.T01:five_prime_UTR
CCACCCGATGTAACGGAGGC+TGG 0.478500 1:-37993914 None:intergenic
TCCAATGCCCTCCATCGCAC+GGG 0.481056 1:+37996759 MsG0180002398.01.T01:CDS
GGTTCAATAAAATAGTAAAC+CGG 0.483972 1:-37991447 None:intergenic
TTACTGGCCTTTCAAGGCAA+TGG 0.490685 1:+37997478 MsG0180002398.01.T01:three_prime_UTR
AGTTCAATATGATGAACCCT+TGG 0.490948 1:+37996551 MsG0180002398.01.T01:CDS
TCAAATTTCATCCTCTTCGA+AGG 0.495541 1:-37997357 None:intergenic
ATTTGATTCACTCACTATCC+AGG 0.497189 1:-37993508 None:intergenic
TTCCAATGCCCTCCATCGCA+CGG 0.498510 1:+37996758 MsG0180002398.01.T01:CDS
ATGAGTAACGCGCAATAGTA+CGG 0.499753 1:-37993574 None:intergenic
CATAAATCCATTGCCTTGAA+AGG 0.500361 1:-37997485 None:intergenic
GATCCAGCCTCCGTTACATC+GGG 0.502030 1:+37993911 MsG0180002398.01.T01:CDS
CGTTACATCGGGTGGATGGT+TGG 0.504839 1:+37993922 MsG0180002398.01.T01:CDS
GAAGTTCATCGTAGAGTTCG+AGG 0.504847 1:-37993707 None:intergenic
AAGTTGCAGAATTGATTTCA+AGG 0.506216 1:+37997590 MsG0180002398.01.T01:three_prime_UTR
AGACACTTTCAGAAAATATC+GGG 0.514113 1:+37994106 MsG0180002398.01.T01:intron
CAGGCAGAATCACTGGGTCC+TGG 0.514243 1:+37996516 MsG0180002398.01.T01:CDS
CTTCGAAGGGATCTCGTTCA+GGG 0.519200 1:-37997343 None:intergenic
TGATCCAGCCTCCGTTACAT+CGG 0.528662 1:+37993910 MsG0180002398.01.T01:CDS
GAAAGTAACTAACCCATCAA+AGG 0.536258 1:-37993784 None:intergenic
ACCTTTGCCTCAACAGTCGA+TGG 0.538020 1:-37994149 None:intergenic
AAAGTAACTAACCCATCAAA+GGG 0.542806 1:-37993783 None:intergenic
CCTCCGTTACATCGGGTGGA+TGG 0.543963 1:+37993918 MsG0180002398.01.T01:CDS
TGGTTATGTTACAGGGTCAA+AGG 0.545621 1:+37996725 MsG0180002398.01.T01:intron
AAGCAGTCAAGGACAAGCTA+TGG 0.547974 1:+37993652 MsG0180002398.01.T01:CDS
ATGCCATCATGTTTGCCCAA+GGG 0.554485 1:-37996567 None:intergenic
CAAATTTCATCCTCTTCGAA+GGG 0.554917 1:-37997356 None:intergenic
AGTTGCAGAATTGATTTCAA+GGG 0.555139 1:+37997591 MsG0180002398.01.T01:three_prime_UTR
CCGAGATATCCACTCCGCAC+AGG 0.555690 1:+37991607 MsG0180002398.01.T01:five_prime_UTR
CTGCAGGGAGAAGCGAATGT+CGG 0.557877 1:-37993619 None:intergenic
GTTCAATATGATGAACCCTT+GGG 0.561068 1:+37996552 MsG0180002398.01.T01:CDS
CCAGCCTCCGTTACATCGGG+TGG 0.561695 1:+37993914 MsG0180002398.01.T01:CDS
TCCATCGACTGTTGAGGCAA+AGG 0.561750 1:+37994148 MsG0180002398.01.T01:CDS
TTTGGAATGATCAGAGAGAT+CGG 0.567068 1:-37993742 None:intergenic
CATGCCATCATGTTTGCCCA+AGG 0.569189 1:-37996568 None:intergenic
TTGTTGTTGACCTAGGGACC+TGG 0.569810 1:+37993490 MsG0180002398.01.T01:intron
GTTGGTCAGGCAGAATCACT+GGG 0.578371 1:+37996510 MsG0180002398.01.T01:CDS
GATGCGTCAAACAGAAATCA+GGG 0.578436 1:-37991571 None:intergenic
CCAATGCCCTCCATCGCACG+GGG 0.580575 1:+37996760 MsG0180002398.01.T01:CDS
ACTGTAGAGAAAACTCATGC+AGG 0.583453 1:-37997406 None:intergenic
GCTCACAGTGGAAGCAGTCA+AGG 0.584286 1:+37993641 MsG0180002398.01.T01:CDS
CAACCATCCACCCGATGTAA+CGG 0.584999 1:-37993921 None:intergenic
GCAAGCTCCATCGACTGTTG+AGG 0.599566 1:+37994142 MsG0180002398.01.T01:CDS
CCAGATGTGAAGTTGAACCT+GGG 0.600274 1:+37996463 MsG0180002398.01.T01:CDS
TGAACTCCAACCCAGAAACC+AGG 0.600462 1:-37996534 None:intergenic
GAACCCTTGGGCAAACATGA+TGG 0.602450 1:+37996564 MsG0180002398.01.T01:CDS
TGCTTCCACTGTGAGCTGCA+GGG 0.617119 1:-37993634 None:intergenic
AGCACAGATGTCTTCCATGT+CGG 0.617237 1:-37994952 None:intergenic
TGTATTGTACTACCTTGTGT+AGG 0.617805 1:+37997550 MsG0180002398.01.T01:three_prime_UTR
CCTGTGCGGAGTGGATATCT+CGG 0.624875 1:-37991607 None:intergenic
AGTTAGGCCAGAGAAAGTGA+AGG 0.626537 1:+37996787 MsG0180002398.01.T01:CDS
CGTTGTACGCCTGTGCGGAG+TGG 0.629270 1:-37991616 None:intergenic
TGAACGAGATCCCTTCGAAG+AGG 0.643991 1:+37997346 MsG0180002398.01.T01:CDS
CTTCTCCCTGCAGCTCACAG+TGG 0.649123 1:+37993629 MsG0180002398.01.T01:CDS
GAGCTTACAGAAAATCGAAG+TGG 0.653089 1:+37993545 MsG0180002398.01.T01:CDS
AGTCAAAGATTGTTCAACTG+CGG 0.656696 1:+37997509 MsG0180002398.01.T01:three_prime_UTR
GAAGAAGCCTATAATAAGCG+AGG 0.657350 1:+37993980 MsG0180002398.01.T01:CDS
TCGTTCGTTGTACGCCTGTG+CGG 0.660648 1:-37991621 None:intergenic
CCATCCACCCGATGTAACGG+AGG 0.665642 1:-37993918 None:intergenic
GCAGACATCAGACACCGACA+TGG 0.669874 1:+37994938 MsG0180002398.01.T01:intron
CAGATGTGAAGTTGAACCTG+GGG 0.671920 1:+37996464 MsG0180002398.01.T01:CDS
GCAGGGAGAAGCGAATGTCG+GGG 0.673796 1:-37993617 None:intergenic
ATGCGTCAAACAGAAATCAG+GGG 0.703191 1:-37991570 None:intergenic
CAATGCCCTCCATCGCACGG+GGG 0.707133 1:+37996761 MsG0180002398.01.T01:CDS
GAAGCCTATAATAAGCGAGG+AGG 0.708980 1:+37993983 MsG0180002398.01.T01:CDS
CTTGTGTAGGAAGAAAACAT+GGG 0.750416 1:+37997563 MsG0180002398.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTTTTAAAAAA+AGG + Chr1:37992671-37992690 MsG0180002398.01.T01:intron 0.0%
!! AAATAAAAATAGAAAGAAAA+AGG - Chr1:37993811-37993830 None:intergenic 10.0%
!! AAATTATAGAAAAATTATAC+AGG + Chr1:37993377-37993396 MsG0180002398.01.T01:intron 10.0%
!! ATATAAAATGATGTAAAAAA+AGG + Chr1:37994399-37994418 MsG0180002398.01.T01:intron 10.0%
!! ATTAACTTATGAAAATAAAT+AGG - Chr1:37994782-37994801 None:intergenic 10.0%
!!! TCTATTTTTTTTTTTAAACA+AGG + Chr1:37992621-37992640 MsG0180002398.01.T01:intron 10.0%
!!! TTTAAAAAAAGGATTTTTAT+GGG + Chr1:37992682-37992701 MsG0180002398.01.T01:intron 10.0%
!!! TTTTAAAAAAAGGATTTTTA+TGG + Chr1:37992681-37992700 MsG0180002398.01.T01:intron 10.0%
!! CATTTATTTAAAAATTTCCT+TGG + Chr1:37996705-37996724 MsG0180002398.01.T01:intron 15.0%
!! TAAATTATGATAAAATTGTG+AGG + Chr1:37992425-37992444 MsG0180002398.01.T01:intron 15.0%
!! TATAATTGATATCTTTATGT+TGG + Chr1:37991759-37991778 MsG0180002398.01.T01:intron 15.0%
!! TCATTTATAAAATTCTAGTA+TGG + Chr1:37995608-37995627 MsG0180002398.01.T01:intron 15.0%
!! TTACATATAAGATAAAAAGA+TGG - Chr1:37996606-37996625 None:intergenic 15.0%
!!! AAAAGAAGTTATTTGTATTT+TGG - Chr1:37995824-37995843 None:intergenic 15.0%
!!! AAAGAAGTTATTTGTATTTT+GGG - Chr1:37995823-37995842 None:intergenic 15.0%
!!! AACAAATCTATTTGTATTTT+AGG - Chr1:37992106-37992125 None:intergenic 15.0%
!!! ATTTTTTTTTTTAAACAAGG+AGG + Chr1:37992624-37992643 MsG0180002398.01.T01:intron 15.0%
!!! TTATTTTAAAGTAGATACTA+GGG + Chr1:37995931-37995950 MsG0180002398.01.T01:intron 15.0%
!!! TTTATTTTAAAGTAGATACT+AGG + Chr1:37995930-37995949 MsG0180002398.01.T01:intron 15.0%
!!! TTTTTCCTTTTAATTTTATC+AGG - Chr1:37996877-37996896 None:intergenic 15.0%
!! AAAAATATTCAGATTCATAC+AGG - Chr1:37996059-37996078 None:intergenic 20.0%
!! AAAATGGAATAAAGATACAA+TGG + Chr1:37995513-37995532 MsG0180002398.01.T01:intron 20.0%
!! AAATGGAATAAAGATACAAT+GGG + Chr1:37995514-37995533 MsG0180002398.01.T01:intron 20.0%
!! AAGGTTTAATATATCCAATA+AGG - Chr1:37994840-37994859 None:intergenic 20.0%
!! AATTTCCAAAATATTTAGGT+AGG + Chr1:37996438-37996457 MsG0180002398.01.T01:intron 20.0%
!! ACACATACATATATATATGT+GGG - Chr1:37992016-37992035 None:intergenic 20.0%
!! ATATATAACGTCAATCAAAA+TGG - Chr1:37993433-37993452 None:intergenic 20.0%
!! ATATCTTTATGTTGGATTAA+TGG + Chr1:37991767-37991786 MsG0180002398.01.T01:intron 20.0%
!! ATGAAATTTGAGTCTTAATA+AGG + Chr1:37997369-37997388 MsG0180002398.01.T01:exon 20.0%
!! ATTAATTACTTAATGTTCCT+AGG - Chr1:37991929-37991948 None:intergenic 20.0%
!! CATAATAAACAATACTTTAC+CGG - Chr1:37992456-37992475 None:intergenic 20.0%
!! GAAAAATATTCTGATACTAA+AGG - Chr1:37996836-37996855 None:intergenic 20.0%
!! TATATAACGTCAATCAAAAT+GGG - Chr1:37993432-37993451 None:intergenic 20.0%
!! TATCTTTATAAATTCTTTCC+AGG + Chr1:37997310-37997329 MsG0180002398.01.T01:intron 20.0%
!! TATCTTTATGTTGGATTAAT+GGG + Chr1:37991768-37991787 MsG0180002398.01.T01:intron 20.0%
!! TATTATTTATATGCTTGTCA+AGG + Chr1:37994688-37994707 MsG0180002398.01.T01:intron 20.0%
!! TTATTACAGAAAACTAAAAC+CGG + Chr1:37991428-37991447 MsG0180002398.01.T01:five_prime_UTR 20.0%
!!! AATTTTTCTGAACATGTAAA+TGG + Chr1:37997186-37997205 MsG0180002398.01.T01:intron 20.0%
!!! ATGAATCTGAATATTTTTTG+CGG + Chr1:37996061-37996080 MsG0180002398.01.T01:intron 20.0%
!!! ATTTTTTTTATGTAAACGCA+TGG + Chr1:37993228-37993247 MsG0180002398.01.T01:intron 20.0%
!!! TACCTAAATATTTTGGAAAT+TGG - Chr1:37996439-37996458 None:intergenic 20.0%
!!! TCATTTTTAAGTGTTTGTTT+AGG + Chr1:37992518-37992537 MsG0180002398.01.T01:intron 20.0%
!!! TTGTTGTTGAAATTAGAATT+AGG + Chr1:37991846-37991865 MsG0180002398.01.T01:intron 20.0%
!!! TTTTCATGAATGATAATTTC+TGG + Chr1:37991820-37991839 MsG0180002398.01.T01:intron 20.0%
!!! TTTTTACTTTTTATTCCATG+TGG + Chr1:37993854-37993873 MsG0180002398.01.T01:intron 20.0%
! AAAACAAGAAAGATTTAGAG+AGG + Chr1:37995985-37996004 MsG0180002398.01.T01:intron 25.0%
! AAACAAGAAAGATTTAGAGA+GGG + Chr1:37995986-37996005 MsG0180002398.01.T01:intron 25.0%
! AAATAATTGAGTCGAATTAC+AGG - Chr1:37993323-37993342 None:intergenic 25.0%
! AACTAGTTAAATTCAAGCTT+AGG - Chr1:37991740-37991759 None:intergenic 25.0%
! AAGATACATAATTGAGCTTA+TGG - Chr1:37994583-37994602 None:intergenic 25.0%
! AATAATTGAGTCGAATTACA+GGG - Chr1:37993322-37993341 None:intergenic 25.0%
! ATCTGAAAAATAAAAGGAGT+GGG - Chr1:37993139-37993158 None:intergenic 25.0%
! CAAAAATGAAAAACTTAACG+TGG - Chr1:37995847-37995866 None:intergenic 25.0%
! CAACTATACTAAAATAACCT+AGG - Chr1:37995047-37995066 None:intergenic 25.0%
! CACACATACATATATATATG+TGG - Chr1:37992017-37992036 None:intergenic 25.0%
! CATAAATATTCAAGTAACTG+AGG - Chr1:37996198-37996217 None:intergenic 25.0%
! CTCCAATTTCCAAAATATTT+AGG + Chr1:37996434-37996453 MsG0180002398.01.T01:intron 25.0%
! CTGTCTATCTGAAAAATAAA+AGG - Chr1:37993145-37993164 None:intergenic 25.0%
! GAGTGAATCAAATTAGTAAA+TGG + Chr1:37993518-37993537 MsG0180002398.01.T01:exon 25.0%
! GGTTAGATTGATAAAAGATT+TGG + Chr1:37995131-37995150 MsG0180002398.01.T01:intron 25.0%
! GGTTCAATAAAATAGTAAAC+CGG - Chr1:37991450-37991469 None:intergenic 25.0%
! GTAGTGTTTGATATAATTAG+CGG + Chr1:37994360-37994379 MsG0180002398.01.T01:intron 25.0%
! TAAGTCATGAACAAAAGTAA+AGG - Chr1:37992921-37992940 None:intergenic 25.0%
! TAATGAATTCTGTTATAGTG+AGG + Chr1:37995303-37995322 MsG0180002398.01.T01:intron 25.0%
! TAATGACAAGATTATGCTAA+TGG + Chr1:37992352-37992371 MsG0180002398.01.T01:intron 25.0%
! TAGTTGTTGTAAATACTATC+AGG - Chr1:37992868-37992887 None:intergenic 25.0%
! TATCTGAAAAATAAAAGGAG+TGG - Chr1:37993140-37993159 None:intergenic 25.0%
! TATGACTAAAAAAACCTGTT+TGG - Chr1:37994534-37994553 None:intergenic 25.0%
! TGTTGAAATTAGAATTAGGA+TGG + Chr1:37991850-37991869 MsG0180002398.01.T01:intron 25.0%
! TGTTGCCTGATAAAATTAAA+AGG + Chr1:37996869-37996888 MsG0180002398.01.T01:intron 25.0%
! TTAGTTAGTGACTGATATTA+TGG + Chr1:37993075-37993094 MsG0180002398.01.T01:intron 25.0%
! TTATGTCTATTACTTGAGAT+TGG + Chr1:37994861-37994880 MsG0180002398.01.T01:intron 25.0%
! TTGATTGATAAGAGATTTGA+TGG + Chr1:37995548-37995567 MsG0180002398.01.T01:intron 25.0%
! TTTAATATATCCAATAAGGC+TGG - Chr1:37994836-37994855 None:intergenic 25.0%
! TTTATAAATTCTTTCCAGGT+TGG + Chr1:37997314-37997333 MsG0180002398.01.T01:intron 25.0%
!! AAACCATTGGTTATTTATTG+TGG + Chr1:37993027-37993046 MsG0180002398.01.T01:intron 25.0%
!! ACTGATAATCTAGCTTATAA+CGG + Chr1:37994309-37994328 MsG0180002398.01.T01:intron 25.0%
!! CCAGTTTTCACAAATAAAAA+AGG - Chr1:37994041-37994060 None:intergenic 25.0%
!! CTTAACTTGAATATGTAGTT+TGG + Chr1:37996009-37996028 MsG0180002398.01.T01:intron 25.0%
!! TAGAGTAACTCTAAGAATAT+TGG - Chr1:37995753-37995772 None:intergenic 25.0%
!! TTCAGATAATATTTTCTCTG+TGG + Chr1:37995334-37995353 MsG0180002398.01.T01:intron 25.0%
!!! AAGAAAAGTATTTTCTTGAG+AGG + Chr1:37992195-37992214 MsG0180002398.01.T01:intron 25.0%
!!! AATTTTGCTTTGCTGTAAAA+GGG + Chr1:37996310-37996329 MsG0180002398.01.T01:intron 25.0%
!!! ATAATCACTCTAAAATAAGG+TGG - Chr1:37997090-37997109 None:intergenic 25.0%
!!! ATTGAAGTTATTTTTGCTCT+TGG - Chr1:37996948-37996967 None:intergenic 25.0%
!!! CATGAATTGGACTTATTTTT+TGG + Chr1:37996229-37996248 MsG0180002398.01.T01:intron 25.0%
!!! CCTTTTTTATTTGTGAAAAC+TGG + Chr1:37994038-37994057 MsG0180002398.01.T01:intron 25.0%
!!! CGGTAAAGTATTGTTTATTA+TGG + Chr1:37992454-37992473 MsG0180002398.01.T01:intron 25.0%
!!! CTTTTATTTTTCAGATAGAC+AGG + Chr1:37993143-37993162 MsG0180002398.01.T01:intron 25.0%
!!! GTTTTATTCTTATGTTAAGC+AGG - Chr1:37996916-37996935 None:intergenic 25.0%
!!! TACTTTTTCTATCAATGTAG+TGG - Chr1:37991648-37991667 None:intergenic 25.0%
!!! TAGGTTGATAAGTATGAAAA+TGG + Chr1:37995497-37995516 MsG0180002398.01.T01:intron 25.0%
!!! TGCATAATCACTCTAAAATA+AGG - Chr1:37997093-37997112 None:intergenic 25.0%
!!! TTCTTTGGTTCTTTTAGTTA+CGG + Chr1:37996273-37996292 MsG0180002398.01.T01:intron 25.0%
AAAAGGAAAAATACGATGAC+AGG + Chr1:37996886-37996905 MsG0180002398.01.T01:intron 30.0%
AAAGGAAAAATACGATGACA+GGG + Chr1:37996887-37996906 MsG0180002398.01.T01:intron 30.0%
AAAGTAACTAACCCATCAAA+GGG - Chr1:37993786-37993805 None:intergenic 30.0%
AATTCTGTTATAGTGAGGTA+AGG + Chr1:37995308-37995327 MsG0180002398.01.T01:intron 30.0%
AATTTCCTTGGTTATGTTAC+AGG + Chr1:37996717-37996736 MsG0180002398.01.T01:intron 30.0%
ACTGCTAGTCATATAACAAA+TGG + Chr1:37996128-37996147 MsG0180002398.01.T01:intron 30.0%
ACTTGAATATGTAGTTTGGA+TGG + Chr1:37996013-37996032 MsG0180002398.01.T01:intron 30.0%
AGAAAAACACACATGATTGA+AGG - Chr1:37996257-37996276 None:intergenic 30.0%
AGAATAGAATCCAAGAAGTT+TGG - Chr1:37993763-37993782 None:intergenic 30.0%
AGACACTTTCAGAAAATATC+GGG + Chr1:37994106-37994125 MsG0180002398.01.T01:intron 30.0%
AGTCCACAATAAATAACCAA+TGG - Chr1:37993033-37993052 None:intergenic 30.0%
ATCGCGTATTTGAGAAAAAA+CGG - Chr1:37991471-37991490 None:intergenic 30.0%
ATCTTACCAAACAAACACTT+AGG + Chr1:37994598-37994617 MsG0180002398.01.T01:intron 30.0%
ATTTCCTTGGTTATGTTACA+GGG + Chr1:37996718-37996737 MsG0180002398.01.T01:intron 30.0%
CAAGATTATGCTAATGGTAT+AGG + Chr1:37992358-37992377 MsG0180002398.01.T01:intron 30.0%
CAGACACTTTCAGAAAATAT+CGG + Chr1:37994105-37994124 MsG0180002398.01.T01:intron 30.0%
CTCAAGTAATAGACATAAGA+AGG - Chr1:37994859-37994878 None:intergenic 30.0%
CTGCTAGTCATATAACAAAT+GGG + Chr1:37996129-37996148 MsG0180002398.01.T01:intron 30.0%
CTTGAATATGTAGTTTGGAT+GGG + Chr1:37996014-37996033 MsG0180002398.01.T01:intron 30.0%
GAAAATGACATTTACCAAAC+AGG + Chr1:37994517-37994536 MsG0180002398.01.T01:intron 30.0%
GAATGAACGAAATCAGTATT+TGG + Chr1:37995881-37995900 MsG0180002398.01.T01:intron 30.0%
GGAACACGTATTAATTATCT+TGG - Chr1:37992897-37992916 None:intergenic 30.0%
GTATAGTTGTCAAAGTTACT+AGG + Chr1:37995058-37995077 MsG0180002398.01.T01:intron 30.0%
GTATGTGTGATATGAATGAA+TGG + Chr1:37992028-37992047 MsG0180002398.01.T01:intron 30.0%
GTGTATTCAATTAAGATTGC+AGG + Chr1:37994421-37994440 MsG0180002398.01.T01:intron 30.0%
TACAGCACAATACTAGATTT+GGG - Chr1:37996993-37997012 None:intergenic 30.0%
TGATTTCGTTCATTCTTCAA+GGG - Chr1:37995876-37995895 None:intergenic 30.0%
TGTTTAGATGCATCATGAAT+TGG + Chr1:37996216-37996235 MsG0180002398.01.T01:intron 30.0%
TTAGTGATCACATAAACCAT+TGG + Chr1:37993014-37993033 MsG0180002398.01.T01:intron 30.0%
TTATAGCTATGAGCTTATAG+CGG + Chr1:37994283-37994302 MsG0180002398.01.T01:intron 30.0%
TTGTAATTGCTGAACAATGT+TGG + Chr1:37992954-37992973 MsG0180002398.01.T01:intron 30.0%
TTGTCAAAGTTACTAGGTTT+AGG + Chr1:37995064-37995083 MsG0180002398.01.T01:intron 30.0%
TTTAACTGAGCAAACACTAA+TGG - Chr1:37992409-37992428 None:intergenic 30.0%
! AAAGGATTTTTATGGGTAGT+AGG + Chr1:37992689-37992708 MsG0180002398.01.T01:intron 30.0%
! AAGTTGCAGAATTGATTTCA+AGG + Chr1:37997590-37997609 MsG0180002398.01.T01:three_prime_UTR 30.0%
! AATTTTCAGAAACGCGATTT+AGG + Chr1:37991543-37991562 MsG0180002398.01.T01:five_prime_UTR 30.0%
! AGATAATATTTTCTCTGTGG+TGG + Chr1:37995337-37995356 MsG0180002398.01.T01:intron 30.0%
! AGTCATATAACAAATGGGTT+TGG + Chr1:37996134-37996153 MsG0180002398.01.T01:intron 30.0%
! AGTTGCAGAATTGATTTCAA+GGG + Chr1:37997591-37997610 MsG0180002398.01.T01:three_prime_UTR 30.0%
! CAATCATGTGTGTTTTTCTT+TGG + Chr1:37996258-37996277 MsG0180002398.01.T01:intron 30.0%
! CACAAATAAAAAAGGTGTGT+TGG - Chr1:37994033-37994052 None:intergenic 30.0%
! CCTAATGGCTTTTCATTTTA+GGG - Chr1:37992584-37992603 None:intergenic 30.0%
! CTCTAGAAACTACAAGATTT+AGG + Chr1:37995478-37995497 MsG0180002398.01.T01:intron 30.0%
! CTGATATTATGGTTGTTGTT+CGG + Chr1:37993086-37993105 MsG0180002398.01.T01:intron 30.0%
! GATAATATTTTCTCTGTGGT+GGG + Chr1:37995338-37995357 MsG0180002398.01.T01:intron 30.0%
! TAGTTTCTAGAGAGAAATGA+TGG - Chr1:37995470-37995489 None:intergenic 30.0%
! TATTACGTTAGCAGTCTTAT+TGG - Chr1:37995671-37995690 None:intergenic 30.0%
! TCCTAATGGCTTTTCATTTT+AGG - Chr1:37992585-37992604 None:intergenic 30.0%
! TGATATTATGGTTGTTGTTC+GGG + Chr1:37993087-37993106 MsG0180002398.01.T01:intron 30.0%
! TGGATCCTACCTAAATATTT+TGG - Chr1:37996446-37996465 None:intergenic 30.0%
!! AGAGGTGTTGTAAAATTTGT+TGG + Chr1:37996492-37996511 MsG0180002398.01.T01:CDS 30.0%
!! ATTACGTTAGCAGTCTTATT+GGG - Chr1:37995670-37995689 None:intergenic 30.0%
!! CAATTTTGCTTTGCTGTAAA+AGG + Chr1:37996309-37996328 MsG0180002398.01.T01:intron 30.0%
!! CCTTCTAAAATATCTTCCAA+AGG - Chr1:37995228-37995247 None:intergenic 30.0%
!! CCTTTGGAAGATATTTTAGA+AGG + Chr1:37995225-37995244 MsG0180002398.01.T01:intron 30.0%
!! GTTTTGGATCAAATTTCTAC+AGG + Chr1:37992300-37992319 MsG0180002398.01.T01:intron 30.0%
!! TGTTGTAAAATTTGTTGGTC+AGG + Chr1:37996497-37996516 MsG0180002398.01.T01:CDS 30.0%
!! TTACTAGGTTTAGGTTGATA+AGG + Chr1:37995073-37995092 MsG0180002398.01.T01:intron 30.0%
!!! TTAATAAGGAAGCTGCTTTT+AGG + Chr1:37997383-37997402 MsG0180002398.01.T01:three_prime_UTR 30.0%
AAAATAAGCCAATCCAAACG+GGG - Chr1:37994624-37994643 None:intergenic 35.0%
AAGATACAATGCGAAATGTG+AGG + Chr1:37995110-37995129 MsG0180002398.01.T01:intron 35.0%
AGAACACAATAGCTAAAAGC+AGG - Chr1:37996655-37996674 None:intergenic 35.0%
AGACATCTGTGCTAATTTCA+AGG + Chr1:37994962-37994981 MsG0180002398.01.T01:CDS 35.0%
AGGAGTAAAGTCGAGATAAA+AGG + Chr1:37994441-37994460 MsG0180002398.01.T01:intron 35.0%
AGTAGATACTAGGGAAGAAA+AGG + Chr1:37995940-37995959 MsG0180002398.01.T01:intron 35.0%
AGTCAAAGATTGTTCAACTG+CGG + Chr1:37997509-37997528 MsG0180002398.01.T01:three_prime_UTR 35.0%
AGTTCAATATGATGAACCCT+TGG + Chr1:37996551-37996570 MsG0180002398.01.T01:CDS 35.0%
ATGGTTGGAAGATACTTCTT+TGG + Chr1:37993937-37993956 MsG0180002398.01.T01:CDS 35.0%
ATTTGATTCACTCACTATCC+AGG - Chr1:37993511-37993530 None:intergenic 35.0%
CAAATTTCATCCTCTTCGAA+GGG - Chr1:37997359-37997378 None:intergenic 35.0%
CAACTAGAAGTTGTTCTTTG+AGG + Chr1:37991702-37991721 MsG0180002398.01.T01:intron 35.0%
CAGGAATTAACATGATGAGT+TGG - Chr1:37996636-37996655 None:intergenic 35.0%
CATAAATCCATTGCCTTGAA+AGG - Chr1:37997488-37997507 None:intergenic 35.0%
CCCTAAAATGAAAAGCCATT+AGG + Chr1:37992581-37992600 MsG0180002398.01.T01:intron 35.0%
CCCTATATCTAATGCTTTAC+CGG + Chr1:37992814-37992833 MsG0180002398.01.T01:intron 35.0%
CGAAAATAAGCCAATCCAAA+CGG - Chr1:37994626-37994645 None:intergenic 35.0%
CTGATTTCGTTCATTCTTCA+AGG - Chr1:37995877-37995896 None:intergenic 35.0%
CTTGTGTAGGAAGAAAACAT+GGG + Chr1:37997563-37997582 MsG0180002398.01.T01:three_prime_UTR 35.0%
GAAAATAAGCCAATCCAAAC+GGG - Chr1:37994625-37994644 None:intergenic 35.0%
GAAAGTAACTAACCCATCAA+AGG - Chr1:37993787-37993806 None:intergenic 35.0%
GACAAGCTATGGAAAAAATG+TGG + Chr1:37993663-37993682 MsG0180002398.01.T01:CDS 35.0%
GATTCTATTCTCCCTTTGAT+GGG + Chr1:37993772-37993791 MsG0180002398.01.T01:CDS 35.0%
GGCTGAAGGTTCATATATAT+GGG - Chr1:37991995-37992014 None:intergenic 35.0%
GTACAGCACAATACTAGATT+TGG - Chr1:37996994-37997013 None:intergenic 35.0%
GTAGATACTAGGGAAGAAAA+GGG + Chr1:37995941-37995960 MsG0180002398.01.T01:intron 35.0%
GTCATGAACAAAAGTAAAGG+TGG - Chr1:37992918-37992937 None:intergenic 35.0%
GTTAAATTCAAGCTTAGGAG+AGG - Chr1:37991735-37991754 None:intergenic 35.0%
GTTCAATATGATGAACCCTT+GGG + Chr1:37996552-37996571 MsG0180002398.01.T01:CDS 35.0%
TAACAAACCTTCACTTTCTC+TGG - Chr1:37996797-37996816 None:intergenic 35.0%
TAATGTGTGGAATGTACCTT+TGG + Chr1:37995209-37995228 MsG0180002398.01.T01:intron 35.0%
TAATTGCTGAACAATGTTGG+TGG + Chr1:37992957-37992976 MsG0180002398.01.T01:intron 35.0%
TACGATCATAATTGTTGCCT+AGG + Chr1:37995027-37995046 MsG0180002398.01.T01:intron 35.0%
TCAAATTTCATCCTCTTCGA+AGG - Chr1:37997360-37997379 None:intergenic 35.0%
TCAATCCAAATGGAGGTAAT+AGG + Chr1:37995184-37995203 MsG0180002398.01.T01:intron 35.0%
TCAGATTCATACAGGCTATA+TGG - Chr1:37996051-37996070 None:intergenic 35.0%
TCTGATCATTCCAAACTTCT+TGG + Chr1:37993750-37993769 MsG0180002398.01.T01:CDS 35.0%
TCTTTAACTAAGCTATGCCT+AGG + Chr1:37991909-37991928 MsG0180002398.01.T01:intron 35.0%
TGTATTGTACTACCTTGTGT+AGG + Chr1:37997550-37997569 MsG0180002398.01.T01:three_prime_UTR 35.0%
TTGAGAAAAGCTACTCCTAA+TGG - Chr1:37992599-37992618 None:intergenic 35.0%
TTTGGCAAACTTACTCTTAC+TGG + Chr1:37997462-37997481 MsG0180002398.01.T01:three_prime_UTR 35.0%
! AAAGGTACATTCCACACATT+AGG - Chr1:37995210-37995229 None:intergenic 35.0%
! AATGGACACTTTCACTGATT+TGG + Chr1:37994905-37994924 MsG0180002398.01.T01:intron 35.0%
! ACTAGATTTGGGATAAGAGT+AGG - Chr1:37996982-37997001 None:intergenic 35.0%
! AGACTTCAAGACTCTGTTTT+TGG + Chr1:37993205-37993224 MsG0180002398.01.T01:intron 35.0%
! CATATATATATGTGGGCTGA+AGG - Chr1:37992009-37992028 None:intergenic 35.0%
! CCGGTAAAGCATTAGATATA+GGG - Chr1:37992817-37992836 None:intergenic 35.0%
! CTGTTTTGTCTGAACTGTTT+TGG + Chr1:37992284-37992303 MsG0180002398.01.T01:intron 35.0%
! GTAAGCTAACTTGTAGATGT+AGG - Chr1:37995718-37995737 None:intergenic 35.0%
! TAAAAAAGGTGTGTTGGATG+AGG - Chr1:37994027-37994046 None:intergenic 35.0%
! TATATCCAATAAGGCTGGTT+TGG - Chr1:37994831-37994850 None:intergenic 35.0%
! TTGGGATAAGAGTAGGATTT+TGG - Chr1:37996975-37996994 None:intergenic 35.0%
! TTTGGAATGATCAGAGAGAT+CGG - Chr1:37993745-37993764 None:intergenic 35.0%
!! AATTAGGATGGATTAGTGTG+TGG + Chr1:37991862-37991881 MsG0180002398.01.T01:intron 35.0%
!! ATAGACAGGTTAGTTTGTTG+TGG + Chr1:37993157-37993176 MsG0180002398.01.T01:intron 35.0%
!! ATCTAGCTTATAACGGATTG+TGG + Chr1:37994316-37994335 MsG0180002398.01.T01:intron 35.0%
!! TTACGTTAGCAGTCTTATTG+GGG - Chr1:37995669-37995688 None:intergenic 35.0%
!! TTAGTTTGTTGTGGACACAA+GGG + Chr1:37993166-37993185 MsG0180002398.01.T01:intron 35.0%
AAGATACAATGGGCAATACG+AGG + Chr1:37995524-37995543 MsG0180002398.01.T01:intron 40.0%
ACTCAATAGTATTCACCTGC+CGG - Chr1:37992836-37992855 None:intergenic 40.0%
ACTGTAGAGAAAACTCATGC+AGG - Chr1:37997409-37997428 None:intergenic 40.0%
ATAAAATTGTGAGGCAGCTC+CGG + Chr1:37992434-37992453 MsG0180002398.01.T01:intron 40.0%
ATATCTAATGCTTTACCGGC+AGG + Chr1:37992818-37992837 MsG0180002398.01.T01:intron 40.0%
ATGAGTAACGCGCAATAGTA+CGG - Chr1:37993577-37993596 None:intergenic 40.0%
ATGCGTCAAACAGAAATCAG+GGG - Chr1:37991573-37991592 None:intergenic 40.0%
CCTTGTGTAGGAAGAAAACA+TGG + Chr1:37997562-37997581 MsG0180002398.01.T01:three_prime_UTR 40.0%
CGTTCATTCTTCAAGGGAAT+AGG - Chr1:37995870-37995889 None:intergenic 40.0%
GAAGAAGCCTATAATAAGCG+AGG + Chr1:37993980-37993999 MsG0180002398.01.T01:CDS 40.0%
GAGCTTACAGAAAATCGAAG+TGG + Chr1:37993545-37993564 MsG0180002398.01.T01:CDS 40.0%
GATGCGTCAAACAGAAATCA+GGG - Chr1:37991574-37991593 None:intergenic 40.0%
GGATTCTATTCTCCCTTTGA+TGG + Chr1:37993771-37993790 MsG0180002398.01.T01:CDS 40.0%
GGGCTGAAGGTTCATATATA+TGG - Chr1:37991996-37992015 None:intergenic 40.0%
GTAAATACTATCAGGCGTGA+GGG - Chr1:37992860-37992879 None:intergenic 40.0%
GTATGCCAGTTCAATCCAAA+TGG + Chr1:37995174-37995193 MsG0180002398.01.T01:intron 40.0%
GTTGGAAGATACTTCTTTGG+TGG + Chr1:37993940-37993959 MsG0180002398.01.T01:CDS 40.0%
TACCTCCATTTGGATTGAAC+TGG - Chr1:37995182-37995201 None:intergenic 40.0%
TATGCCATAGACTTCGAACT+TGG + Chr1:37992152-37992171 MsG0180002398.01.T01:intron 40.0%
TGCATGTACAGCACAAAGTT+AGG + Chr1:37994220-37994239 MsG0180002398.01.T01:intron 40.0%
TGGTTATGTTACAGGGTCAA+AGG + Chr1:37996725-37996744 MsG0180002398.01.T01:intron 40.0%
TGTAAATACTATCAGGCGTG+AGG - Chr1:37992861-37992880 None:intergenic 40.0%
TTAGGCCTATTACCTCCATT+TGG - Chr1:37995192-37995211 None:intergenic 40.0%
TTGACCCTGTAACATAACCA+AGG - Chr1:37996725-37996744 None:intergenic 40.0%
TTGGATGAGGTGATGATAGA+GGG - Chr1:37994014-37994033 None:intergenic 40.0%
! CCATGTTTTCTTCCTACACA+AGG - Chr1:37997565-37997584 None:intergenic 40.0%
! CTAGAAGTTGTTCTTTGAGG+TGG + Chr1:37991705-37991724 MsG0180002398.01.T01:intron 40.0%
! CTTTTTATTCCATGTGGACC+TGG + Chr1:37993860-37993879 MsG0180002398.01.T01:intron 40.0%
! GCCGGTAAAGCATTAGATAT+AGG - Chr1:37992818-37992837 None:intergenic 40.0%
!! ATTTTAGAAGGATGCTGAGC+TGG + Chr1:37995237-37995256 MsG0180002398.01.T01:intron 40.0%
!! CTAGGTTTAGGTTGATAAGG+AGG + Chr1:37995076-37995095 MsG0180002398.01.T01:intron 40.0%
!! GCACAAAGTTAGGCTTTGTT+TGG + Chr1:37994230-37994249 MsG0180002398.01.T01:intron 40.0%
!! GTTAGTTTGTTGTGGACACA+AGG + Chr1:37993165-37993184 MsG0180002398.01.T01:intron 40.0%
!! TTACTCTTACTGGCCTTTCA+AGG + Chr1:37997472-37997491 MsG0180002398.01.T01:three_prime_UTR 40.0%
!! TTGCACTTGTTGTTGACCTA+GGG + Chr1:37993484-37993503 MsG0180002398.01.T01:intron 40.0%
!! TTTGCACTTGTTGTTGACCT+AGG + Chr1:37993483-37993502 MsG0180002398.01.T01:intron 40.0%
AAGAGACCTACTTGTCTCAG+TGG - Chr1:37993116-37993135 None:intergenic 45.0%
AAGCAGTCAAGGACAAGCTA+TGG + Chr1:37993652-37993671 MsG0180002398.01.T01:CDS 45.0%
AGCACAGATGTCTTCCATGT+CGG - Chr1:37994955-37994974 None:intergenic 45.0%
AGTTAGGCCAGAGAAAGTGA+AGG + Chr1:37996787-37996806 MsG0180002398.01.T01:CDS 45.0%
ATACTAGGGAAGAAAAGGGC+TGG + Chr1:37995945-37995964 MsG0180002398.01.T01:intron 45.0%
ATGCCATCATGTTTGCCCAA+GGG - Chr1:37996570-37996589 None:intergenic 45.0%
ATTCTGACAGTGACACGAGA+TGG + Chr1:37997213-37997232 MsG0180002398.01.T01:intron 45.0%
CAGATGTGAAGTTGAACCTG+GGG + Chr1:37996464-37996483 MsG0180002398.01.T01:CDS 45.0%
CATGCCTCCTCGCTTATTAT+AGG - Chr1:37993990-37994009 None:intergenic 45.0%
CCAGATGTGAAGTTGAACCT+GGG + Chr1:37996463-37996482 MsG0180002398.01.T01:CDS 45.0%
CGATGCGTCAAACAGAAATC+AGG - Chr1:37991575-37991594 None:intergenic 45.0%
CTAGCCAAGTTCGAAGTCTA+TGG - Chr1:37992159-37992178 None:intergenic 45.0%
CTTGCTAACTGCACACACTA+AGG + Chr1:37997023-37997042 MsG0180002398.01.T01:intron 45.0%
GAAGCCTATAATAAGCGAGG+AGG + Chr1:37993983-37994002 MsG0180002398.01.T01:CDS 45.0%
GAAGTTCATCGTAGAGTTCG+AGG - Chr1:37993710-37993729 None:intergenic 45.0%
GAGGTAATAGGCCTAATGTG+TGG + Chr1:37995196-37995215 MsG0180002398.01.T01:intron 45.0%
GGTGGTCAGTTGACAAATTC+AGG + Chr1:37992975-37992994 MsG0180002398.01.T01:intron 45.0%
GTTGGATGAGGTGATGATAG+AGG - Chr1:37994015-37994034 None:intergenic 45.0%
TACTAGGGAAGAAAAGGGCT+GGG + Chr1:37995946-37995965 MsG0180002398.01.T01:intron 45.0%
TCCAGATGTGAAGTTGAACC+TGG + Chr1:37996462-37996481 MsG0180002398.01.T01:CDS 45.0%
TGCCAGTTCAATCCAAATGG+AGG + Chr1:37995177-37995196 MsG0180002398.01.T01:intron 45.0%
TTATTGGGGTAGGCTTGTAC+TGG - Chr1:37995655-37995674 None:intergenic 45.0%
! CCAAACCAAACCAGCCTTAT+TGG + Chr1:37994823-37994842 MsG0180002398.01.T01:intron 45.0%
!! CCAATAAGGCTGGTTTGGTT+TGG - Chr1:37994826-37994845 None:intergenic 45.0%
!! GTTAGCAGTCTTATTGGGGT+AGG - Chr1:37995665-37995684 None:intergenic 45.0%
!! TTACTGGCCTTTCAAGGCAA+TGG + Chr1:37997478-37997497 MsG0180002398.01.T01:three_prime_UTR 45.0%
!!! ATTTAATTTTAACATTAATT+TGG + Chr1:37997444-37997463 MsG0180002398.01.T01:three_prime_UTR 5.0%
AATCACTGGGTCCTGGTTTC+TGG + Chr1:37996523-37996542 MsG0180002398.01.T01:CDS 50.0%
ACAAACACTTAGGCCCCGTT+TGG + Chr1:37994608-37994627 MsG0180002398.01.T01:intron 50.0%
ACCTTTGCCTCAACAGTCGA+TGG - Chr1:37994152-37994171 None:intergenic 50.0%
ACGGGGCCTAAGTGTTTGTT+TGG - Chr1:37994607-37994626 None:intergenic 50.0%
ACTAGGGAAGAAAAGGGCTG+GGG + Chr1:37995947-37995966 MsG0180002398.01.T01:intron 50.0%
AGCTAGCGGAAGTTAAGGAG+AGG + Chr1:37995275-37995294 MsG0180002398.01.T01:intron 50.0%
ATAGCAGGTGGAGAAGCTAG+CGG + Chr1:37995261-37995280 MsG0180002398.01.T01:intron 50.0%
ATCACTGGGTCCTGGTTTCT+GGG + Chr1:37996524-37996543 MsG0180002398.01.T01:CDS 50.0%
CAACCATCCACCCGATGTAA+CGG - Chr1:37993924-37993943 None:intergenic 50.0%
CATGCCATCATGTTTGCCCA+AGG - Chr1:37996571-37996590 None:intergenic 50.0%
CCCAGGTTCAACTTCACATC+TGG - Chr1:37996466-37996485 None:intergenic 50.0%
CTAGCGGAAGTTAAGGAGAG+GGG + Chr1:37995277-37995296 MsG0180002398.01.T01:intron 50.0%
CTTCGAAGGGATCTCGTTCA+GGG - Chr1:37997346-37997365 None:intergenic 50.0%
GAACCCTTGGGCAAACATGA+TGG + Chr1:37996564-37996583 MsG0180002398.01.T01:CDS 50.0%
GCTAGCGGAAGTTAAGGAGA+GGG + Chr1:37995276-37995295 MsG0180002398.01.T01:intron 50.0%
GGAGAAGCTAGCGGAAGTTA+AGG + Chr1:37995270-37995289 MsG0180002398.01.T01:intron 50.0%
GGGAATCCACTGAGACAAGT+AGG + Chr1:37993107-37993126 MsG0180002398.01.T01:intron 50.0%
GTTGAACCTGGGGCAAAAAG+AGG + Chr1:37996474-37996493 MsG0180002398.01.T01:CDS 50.0%
GTTGGTCAGGCAGAATCACT+GGG + Chr1:37996510-37996529 MsG0180002398.01.T01:CDS 50.0%
TAGCGGAAGTTAAGGAGAGG+GGG + Chr1:37995278-37995297 MsG0180002398.01.T01:intron 50.0%
TCTTCGAAGGGATCTCGTTC+AGG - Chr1:37997347-37997366 None:intergenic 50.0%
TGAACGAGATCCCTTCGAAG+AGG + Chr1:37997346-37997365 MsG0180002398.01.T01:CDS 50.0%
TGAACTCCAACCCAGAAACC+AGG - Chr1:37996537-37996556 None:intergenic 50.0%
TGATCCAGCCTCCGTTACAT+CGG + Chr1:37993910-37993929 MsG0180002398.01.T01:CDS 50.0%
TGTTGGTCAGGCAGAATCAC+TGG + Chr1:37996509-37996528 MsG0180002398.01.T01:CDS 50.0%
TTATTCCATGTGGACCTGGC+AGG + Chr1:37993864-37993883 MsG0180002398.01.T01:intron 50.0%
! ACAACACCTCTTTTTGCCCC+AGG - Chr1:37996483-37996502 None:intergenic 50.0%
! GGAAGCTGTTGGGTTAGGTT+CGG + Chr1:37995359-37995378 MsG0180002398.01.T01:intron 50.0%
! TCCATCGACTGTTGAGGCAA+AGG + Chr1:37994148-37994167 MsG0180002398.01.T01:CDS 50.0%
! TGACACGAGATGGTGGCAAA+AGG + Chr1:37997223-37997242 MsG0180002398.01.T01:intron 50.0%
! TTGTTGTTGACCTAGGGACC+TGG + Chr1:37993490-37993509 MsG0180002398.01.T01:intron 50.0%
!!! ATGCGCTGGCTTTTGGGTAA+TGG + Chr1:37994887-37994906 MsG0180002398.01.T01:intron 50.0%
ACACACTAAGGCTCCGTTGG+GGG + Chr1:37997035-37997054 MsG0180002398.01.T01:intron 55.0%
ACGTGCAAACGAAACCTGCC+AGG - Chr1:37993881-37993900 None:intergenic 55.0%
CACACACTAAGGCTCCGTTG+GGG + Chr1:37997034-37997053 MsG0180002398.01.T01:intron 55.0%
CACTCACTATCCAGGTCCCT+AGG - Chr1:37993503-37993522 None:intergenic 55.0%
CACTTAGGCCCCGTTTGGAT+TGG + Chr1:37994613-37994632 MsG0180002398.01.T01:intron 55.0%
CATCGCACGGGGGAATAGTT+AGG + Chr1:37996771-37996790 MsG0180002398.01.T01:CDS 55.0%
CCTGTGCGGAGTGGATATCT+CGG - Chr1:37991610-37991629 None:intergenic 55.0%
CGTTACATCGGGTGGATGGT+TGG + Chr1:37993922-37993941 MsG0180002398.01.T01:CDS 55.0%
CTAACTATTCCCCCGTGCGA+TGG - Chr1:37996773-37996792 None:intergenic 55.0%
CTGACAGTGACACGAGATGG+TGG + Chr1:37997216-37997235 MsG0180002398.01.T01:intron 55.0%
CTGCAGGGAGAAGCGAATGT+CGG - Chr1:37993622-37993641 None:intergenic 55.0%
GATCCAGCCTCCGTTACATC+GGG + Chr1:37993911-37993930 MsG0180002398.01.T01:CDS 55.0%
GCACACACTAAGGCTCCGTT+GGG + Chr1:37997033-37997052 MsG0180002398.01.T01:intron 55.0%
GCAGACATCAGACACCGACA+TGG + Chr1:37994938-37994957 MsG0180002398.01.T01:intron 55.0%
GCTCACAGTGGAAGCAGTCA+AGG + Chr1:37993641-37993660 MsG0180002398.01.T01:CDS 55.0%
GTTCAGGGAAGTCACCAACC+TGG - Chr1:37997331-37997350 None:intergenic 55.0%
TCGTTCGTTGTACGCCTGTG+CGG - Chr1:37991624-37991643 None:intergenic 55.0%
TGCACACACTAAGGCTCCGT+TGG + Chr1:37997032-37997051 MsG0180002398.01.T01:intron 55.0%
TGCAGGGAGAAGCGAATGTC+GGG - Chr1:37993621-37993640 None:intergenic 55.0%
TGCTTCCACTGTGAGCTGCA+GGG - Chr1:37993637-37993656 None:intergenic 55.0%
TGGTGGGAAGCTGTTGGGTT+AGG + Chr1:37995354-37995373 MsG0180002398.01.T01:intron 55.0%
TTCCAATGCCCTCCATCGCA+CGG + Chr1:37996758-37996777 MsG0180002398.01.T01:CDS 55.0%
! CTCTGTGGTGGGAAGCTGTT+GGG + Chr1:37995349-37995368 MsG0180002398.01.T01:intron 55.0%
! CTTGAGATTGGCTCATGCGC+TGG + Chr1:37994873-37994892 MsG0180002398.01.T01:intron 55.0%
! GCAAGCTCCATCGACTGTTG+AGG + Chr1:37994142-37994161 MsG0180002398.01.T01:CDS 55.0%
! TCTCTGTGGTGGGAAGCTGT+TGG + Chr1:37995348-37995367 MsG0180002398.01.T01:intron 55.0%
!!! TGGCTCATGCGCTGGCTTTT+GGG + Chr1:37994881-37994900 MsG0180002398.01.T01:intron 55.0%
!!! TTGGCTCATGCGCTGGCTTT+TGG + Chr1:37994880-37994899 MsG0180002398.01.T01:intron 55.0%
ACTATTCCCCCGTGCGATGG+AGG - Chr1:37996770-37996789 None:intergenic 60.0%
CACACTAAGGCTCCGTTGGG+GGG + Chr1:37997036-37997055 MsG0180002398.01.T01:intron 60.0%
CAGGCAGAATCACTGGGTCC+TGG + Chr1:37996516-37996535 MsG0180002398.01.T01:CDS 60.0%
CCATCCACCCGATGTAACGG+AGG - Chr1:37993921-37993940 None:intergenic 60.0%
CCGAGATATCCACTCCGCAC+AGG + Chr1:37991607-37991626 MsG0180002398.01.T01:five_prime_UTR 60.0%
CCTCCGTTACATCGGGTGGA+TGG + Chr1:37993918-37993937 MsG0180002398.01.T01:CDS 60.0%
CGAAACCTGCCAGGTCCACA+TGG - Chr1:37993872-37993891 None:intergenic 60.0%
CTATTCCCCCGTGCGATGGA+GGG - Chr1:37996769-37996788 None:intergenic 60.0%
CTCTTTCCCTCTCCCCCCAA+CGG - Chr1:37997051-37997070 None:intergenic 60.0%
CTGCTTCCACTGTGAGCTGC+AGG - Chr1:37993638-37993657 None:intergenic 60.0%
CTTCTCCCTGCAGCTCACAG+TGG + Chr1:37993629-37993648 MsG0180002398.01.T01:CDS 60.0%
GCAGGGAGAAGCGAATGTCG+GGG - Chr1:37993620-37993639 None:intergenic 60.0%
GGATGCTGAGCTGGCATAGC+AGG + Chr1:37995246-37995265 MsG0180002398.01.T01:intron 60.0%
TCCAATGCCCTCCATCGCAC+GGG + Chr1:37996759-37996778 MsG0180002398.01.T01:CDS 60.0%
TGCTGAGCTGGCATAGCAGG+TGG + Chr1:37995249-37995268 MsG0180002398.01.T01:intron 60.0%
TGGGGGGAGAGGGAAAGAGA+GGG + Chr1:37997052-37997071 MsG0180002398.01.T01:intron 60.0%
TTGGGGGGAGAGGGAAAGAG+AGG + Chr1:37997051-37997070 MsG0180002398.01.T01:intron 60.0%
! CTGGGTCCTGGTTTCTGGGT+TGG + Chr1:37996528-37996547 MsG0180002398.01.T01:CDS 60.0%
AAGGCTCCGTTGGGGGGAGA+GGG + Chr1:37997042-37997061 MsG0180002398.01.T01:intron 65.0%
CAATGCCCTCCATCGCACGG+GGG + Chr1:37996761-37996780 MsG0180002398.01.T01:CDS 65.0%
CCAATGCCCTCCATCGCACG+GGG + Chr1:37996760-37996779 MsG0180002398.01.T01:CDS 65.0%
CCAGCCTCCGTTACATCGGG+TGG + Chr1:37993914-37993933 MsG0180002398.01.T01:CDS 65.0%
CGTTGTACGCCTGTGCGGAG+TGG - Chr1:37991619-37991638 None:intergenic 65.0%
TAAGGCTCCGTTGGGGGGAG+AGG + Chr1:37997041-37997060 MsG0180002398.01.T01:intron 65.0%
! CCACCCGATGTAACGGAGGC+TGG - Chr1:37993917-37993936 None:intergenic 65.0%
! CCCCGTGCGATGGAGGGCAT+TGG - Chr1:37996763-37996782 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 37991428 37997613 37991428 ID=MsG0180002398.01;Name=MsG0180002398.01
Chr1 mRNA 37991428 37997613 37991428 ID=MsG0180002398.01.T01;Parent=MsG0180002398.01;Name=MsG0180002398.01.T01;_AED=0.43;_eAED=0.44;_QI=269|0.85|0.75|1|0.85|0.75|8|234|241
Chr1 exon 37997332 37997613 37997332 ID=MsG0180002398.01.T01:exon:13164;Parent=MsG0180002398.01.T01
Chr1 exon 37996739 37996808 37996739 ID=MsG0180002398.01.T01:exon:13163;Parent=MsG0180002398.01.T01
Chr1 exon 37996456 37996589 37996456 ID=MsG0180002398.01.T01:exon:13162;Parent=MsG0180002398.01.T01
Chr1 exon 37994942 37994983 37994942 ID=MsG0180002398.01.T01:exon:13161;Parent=MsG0180002398.01.T01
Chr1 exon 37994118 37994169 37994118 ID=MsG0180002398.01.T01:exon:13160;Parent=MsG0180002398.01.T01
Chr1 exon 37993886 37994008 37993886 ID=MsG0180002398.01.T01:exon:13159;Parent=MsG0180002398.01.T01
Chr1 exon 37993505 37993793 37993505 ID=MsG0180002398.01.T01:exon:13158;Parent=MsG0180002398.01.T01
Chr1 exon 37991428 37991664 37991428 ID=MsG0180002398.01.T01:exon:13157;Parent=MsG0180002398.01.T01
Chr1 five_prime_UTR 37991428 37991664 37991428 ID=MsG0180002398.01.T01:five_prime_utr;Parent=MsG0180002398.01.T01
Chr1 five_prime_UTR 37993505 37993536 37993505 ID=MsG0180002398.01.T01:five_prime_utr;Parent=MsG0180002398.01.T01
Chr1 CDS 37993537 37993793 37993537 ID=MsG0180002398.01.T01:cds;Parent=MsG0180002398.01.T01
Chr1 CDS 37993886 37994008 37993886 ID=MsG0180002398.01.T01:cds;Parent=MsG0180002398.01.T01
Chr1 CDS 37994118 37994169 37994118 ID=MsG0180002398.01.T01:cds;Parent=MsG0180002398.01.T01
Chr1 CDS 37994942 37994983 37994942 ID=MsG0180002398.01.T01:cds;Parent=MsG0180002398.01.T01
Chr1 CDS 37996456 37996589 37996456 ID=MsG0180002398.01.T01:cds;Parent=MsG0180002398.01.T01
Chr1 CDS 37996739 37996808 37996739 ID=MsG0180002398.01.T01:cds;Parent=MsG0180002398.01.T01
Chr1 CDS 37997332 37997379 37997332 ID=MsG0180002398.01.T01:cds;Parent=MsG0180002398.01.T01
Chr1 three_prime_UTR 37997380 37997613 37997380 ID=MsG0180002398.01.T01:three_prime_utr;Parent=MsG0180002398.01.T01
Gene Sequence

>MsG0180002398.01.T01

ATGGCATCGAGCTTACAGAAAATCGAAGTGGACGAGTCCGTACTATTGCGCGTTACTCATTCTAATCTCAAATCTTTCAACCCCGACATTCGCTTCTCCCTGCAGCTCACAGTGGAAGCAGTCAAGGACAAGCTATGGAAAAAATGTGGTACTTCTGTCAACTCAATGCACCTCGAACTCTACGATGAACTTCACAATAAAATCGCCGATCTCTCTGATCATTCCAAACTTCTTGGATTCTATTCTCCCTTTGATGGGTTTCGTTTGCACGTCGTTGATCTTGATCCAGCCTCCGTTACATCGGGTGGATGGTTGGAAGATACTTCTTTGGTGGAGAAATACGAAATTTCTGAAGAAGCCTATAATAAGCGAGGAGGCATAAAATATCGGGAGAAGTTGACTTCGCAAGCTCCATCGACTGTTGAGGCAAAGACATCAGACACCGACATGGAAGACATCTGTGCTAATTTCAAGGTAGGATCCAGATGTGAAGTTGAACCTGGGGCAAAAAGAGGTGTTGTAAAATTTGTTGGTCAGGCAGAATCACTGGGTCCTGGTTTCTGGGTTGGAGTTCAATATGATGAACCCTTGGGCAAACATGATGGCATGGTCAAAGGAGTACGTTACTTCCAATGCCCTCCATCGCACGGGGGAATAGTTAGGCCAGAGAAAGTGAAGGTTGGTGACTTCCCTGAACGAGATCCCTTCGAAGAGGATGAAATTTGA
Protein sequence

>MsG0180002398.01.T01

MASSLQKIEVDESVLLRVTHSNLKSFNPDIRFSLQLTVEAVKDKLWKKCGTSVNSMHLELYDELHNKIADLSDHSKLLGFYSPFDGFRLHVVDLDPASVTSGGWLEDTSLVEKYEISEEAYNKRGGIKYREKLTSQAPSTVEAKTSDTDMEDICANFKVGSRCEVEPGAKRGVVKFVGQAESLGPGFWVGVQYDEPLGKHDGMVKGVRYFQCPPSHGGIVRPEKVKVGDFPERDPFEEDEI*