Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003180.01.T01 | GAU24967.1 | 63.26 | 362 | 97 | 4 | 3 | 332 | 183 | 540 | 7.75E-151 | 445 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003180.01.T01 | A0A2Z6N6X0 | 63.260 | 362 | 97 | 4 | 3 | 332 | 183 | 540 | 3.70e-151 | 445 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180003180.01 | MsG0680031355.01 | 0.803219 | 3.870430e-49 | 1.934026e-46 |
| MsG0180003180.01 | MsG0780040596.01 | 0.816430 | 5.552169e-52 | 3.933116e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003180.01.T01 | MTR_8g062180 | 60.383 | 366 | 109 | 4 | 1 | 333 | 1 | 363 | 1.19e-150 | 428 |
| MsG0180003180.01.T01 | MTR_2g449900 | 77.333 | 150 | 11 | 3 | 207 | 335 | 1 | 148 | 2.63e-70 | 216 |
| MsG0180003180.01.T01 | MTR_2g449910 | 83.178 | 107 | 18 | 0 | 1 | 107 | 45 | 151 | 1.33e-59 | 189 |
| MsG0180003180.01.T01 | MTR_1789s0010 | 75.824 | 91 | 22 | 0 | 52 | 142 | 1 | 91 | 1.66e-46 | 153 |
| MsG0180003180.01.T01 | MTR_2g076190 | 31.579 | 323 | 173 | 4 | 52 | 330 | 1 | 319 | 1.08e-42 | 150 |
| MsG0180003180.01.T01 | MTR_7g110505 | 33.115 | 305 | 155 | 6 | 67 | 326 | 16 | 316 | 7.76e-39 | 140 |
| MsG0180003180.01.T01 | MTR_8g014565 | 37.168 | 226 | 133 | 4 | 66 | 290 | 15 | 232 | 1.81e-38 | 138 |
| MsG0180003180.01.T01 | MTR_6g081975 | 36.889 | 225 | 133 | 4 | 67 | 290 | 16 | 232 | 1.95e-38 | 137 |
| MsG0180003180.01.T01 | MTR_7g094380 | 50.388 | 129 | 62 | 2 | 70 | 198 | 9 | 135 | 1.23e-36 | 134 |
| MsG0180003180.01.T01 | MTR_2g076540 | 50.000 | 130 | 63 | 2 | 69 | 198 | 8 | 135 | 3.54e-35 | 132 |
| MsG0180003180.01.T01 | MTR_2g032805 | 34.375 | 224 | 124 | 4 | 67 | 290 | 16 | 216 | 2.31e-32 | 122 |
| MsG0180003180.01.T01 | MTR_8g060820 | 48.819 | 127 | 61 | 3 | 74 | 198 | 1 | 125 | 2.16e-30 | 117 |
| MsG0180003180.01.T01 | MTR_5g086750 | 44.186 | 129 | 56 | 3 | 70 | 198 | 9 | 121 | 6.05e-27 | 107 |
| MsG0180003180.01.T01 | MTR_5g025995 | 29.508 | 305 | 131 | 7 | 67 | 326 | 16 | 281 | 6.22e-25 | 102 |
| MsG0180003180.01.T01 | MTR_0697s0010 | 28.302 | 159 | 108 | 3 | 70 | 222 | 17 | 175 | 1.03e-12 | 68.6 |
| MsG0180003180.01.T01 | MTR_3g070080 | 28.824 | 170 | 108 | 4 | 34 | 201 | 419 | 577 | 1.61e-12 | 68.9 |
| MsG0180003180.01.T01 | MTR_3g070080 | 29.167 | 168 | 106 | 4 | 34 | 199 | 356 | 512 | 1.62e-12 | 68.9 |
| MsG0180003180.01.T01 | MTR_3g075160 | 30.303 | 132 | 90 | 2 | 70 | 199 | 17 | 148 | 1.99e-12 | 67.4 |
| MsG0180003180.01.T01 | MTR_4g036040 | 31.724 | 145 | 72 | 4 | 64 | 208 | 15 | 132 | 2.31e-12 | 67.4 |
| MsG0180003180.01.T01 | MTR_4g102100 | 49.180 | 61 | 30 | 1 | 117 | 177 | 13 | 72 | 8.09e-12 | 60.8 |
| MsG0180003180.01.T01 | MTR_1g055365 | 27.160 | 162 | 111 | 3 | 69 | 226 | 24 | 182 | 5.03e-11 | 64.3 |
| MsG0180003180.01.T01 | MTR_2g086350 | 27.642 | 123 | 87 | 2 | 78 | 200 | 35 | 155 | 9.77e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003180.01.T01 | AT2G24960 | 29.651 | 172 | 105 | 4 | 29 | 200 | 299 | 454 | 2.96e-14 | 74.3 |
Find 70 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAACCAATGAAGTTATTT+TGG | 0.159437 | 1:+58016819 | MsG0180003180.01.T01:CDS |
| GTGCTAATGGTGGAGATATT+TGG | 0.190376 | 1:+58017056 | MsG0180003180.01.T01:CDS |
| TAGTCCAATTGCATGTTTCT+AGG | 0.233764 | 1:-58016231 | None:intergenic |
| CACTCAAACCATTCTGAAAA+AGG | 0.297160 | 1:-58016453 | None:intergenic |
| GTGTCTCCATTCAGCAGCTT+CGG | 0.298750 | 1:-58016644 | None:intergenic |
| CCCGCAACGCCATCTCTAAT+TGG | 0.301233 | 1:-58015951 | None:intergenic |
| TGGGCTGAATTAGTTGAAAT+TGG | 0.309896 | 1:+58017076 | MsG0180003180.01.T01:CDS |
| ATTGCATGTTTCTAGGCCTT+TGG | 0.320015 | 1:-58016224 | None:intergenic |
| GCACCTCATCTATTAGAGTT+TGG | 0.331091 | 1:-58015845 | None:intergenic |
| TGTCTCCATTCAGCAGCTTC+GGG | 0.335174 | 1:-58016643 | None:intergenic |
| CCAATTAGAGATGGCGTTGC+GGG | 0.337308 | 1:+58015951 | MsG0180003180.01.T01:CDS |
| CAGAATGGTTTGAGTGGATT+CGG | 0.339723 | 1:+58016460 | MsG0180003180.01.T01:CDS |
| CAAATGATCTATTTCCTCTA+TGG | 0.351245 | 1:-58016794 | None:intergenic |
| CCTCTCCAAAATAACTTCAT+TGG | 0.354565 | 1:-58016824 | None:intergenic |
| TCATCTATTAGAGTTTGGTT+GGG | 0.356316 | 1:-58015840 | None:intergenic |
| AATTTATAATAAAACGGTAT+AGG | 0.359247 | 1:-58016670 | None:intergenic |
| ACAAGGTACATGTATACTTT+AGG | 0.365697 | 1:-58017118 | None:intergenic |
| CATAGAGGAAATAGATCATT+TGG | 0.369976 | 1:+58016795 | MsG0180003180.01.T01:CDS |
| TCTTTAGAAATTGGTTTGTC+CGG | 0.373847 | 1:-58016376 | None:intergenic |
| ATTTCCTTGCGGTTATCAAT+TGG | 0.382990 | 1:-58017178 | None:intergenic |
| CTCATCTATTAGAGTTTGGT+TGG | 0.383424 | 1:-58015841 | None:intergenic |
| TCTAGGCCTTTGGATTTCCT+TGG | 0.393297 | 1:-58016214 | None:intergenic |
| AAGCGCTATGGACAACATTC+TGG | 0.405692 | 1:+58016333 | MsG0180003180.01.T01:CDS |
| TATACTTTAGGCAAGGAAGC+TGG | 0.417718 | 1:-58017106 | None:intergenic |
| TGCTAATGGTGGAGATATTT+GGG | 0.420787 | 1:+58017057 | MsG0180003180.01.T01:CDS |
| CTTTGAAATGAGAGCAAGAA+AGG | 0.425606 | 1:+58016744 | MsG0180003180.01.T01:CDS |
| TTTGGAAAAGATCGAGCAAC+AGG | 0.428413 | 1:+58016703 | MsG0180003180.01.T01:CDS |
| TTGGCTAATTTATAATAAAA+CGG | 0.449294 | 1:-58016676 | None:intergenic |
| TCTTGAGAAGTAGAAATAGA+AGG | 0.460904 | 1:-58016895 | None:intergenic |
| AAACAGAGTAAGAGTGCTAA+TGG | 0.473053 | 1:+58017043 | MsG0180003180.01.T01:intron |
| AGAGTTGAAGAATCACTTCC+CGG | 0.478784 | 1:+58016357 | MsG0180003180.01.T01:CDS |
| AAGGCCTAGAAACATGCAAT+TGG | 0.479046 | 1:+58016227 | MsG0180003180.01.T01:CDS |
| CATCTATTAGAGTTTGGTTG+GGG | 0.485513 | 1:-58015839 | None:intergenic |
| ATTCCAGCATTTCTCCGAAA+AGG | 0.488913 | 1:+58016872 | MsG0180003180.01.T01:CDS |
| CTCAAGATGTGTCATCATCT+AGG | 0.491937 | 1:+58016911 | MsG0180003180.01.T01:CDS |
| GACAATGTTGATGCAGTTAG+TGG | 0.493307 | 1:+58015924 | MsG0180003180.01.T01:CDS |
| GGACTGCTGAAGATGACGTT+TGG | 0.494033 | 1:+58016506 | MsG0180003180.01.T01:CDS |
| GATGTGTTTAGTATTAGATA+TGG | 0.497647 | 1:+58016174 | MsG0180003180.01.T01:intron |
| CGTTTGGGACAGGCTAATTG+AGG | 0.506705 | 1:+58016522 | MsG0180003180.01.T01:CDS |
| ACAGGAGATCATGAAGATAC+AGG | 0.507346 | 1:+58016721 | MsG0180003180.01.T01:CDS |
| ATGCAATTGGACTACTGCTA+TGG | 0.507466 | 1:+58016240 | MsG0180003180.01.T01:CDS |
| GACTGCTGAAGATGACGTTT+GGG | 0.515306 | 1:+58016507 | MsG0180003180.01.T01:CDS |
| CAAGAAAGGCTTCAAATAGC+AGG | 0.522242 | 1:+58016758 | MsG0180003180.01.T01:CDS |
| TGGTTTGAGTGGATTCGGAT+GGG | 0.528456 | 1:+58016465 | MsG0180003180.01.T01:CDS |
| CTTTAGAAATTGGTTTGTCC+GGG | 0.529559 | 1:-58016375 | None:intergenic |
| TATTTGCATCAACTAACAAT+GGG | 0.532643 | 1:+58016283 | MsG0180003180.01.T01:CDS |
| CTGAAGATGACGTTTGGGAC+AGG | 0.535636 | 1:+58016512 | MsG0180003180.01.T01:CDS |
| AATGAAAATGATTCTCAAGA+GGG | 0.538945 | 1:+58015882 | MsG0180003180.01.T01:CDS |
| TAGTATGACATCAAGCGCTA+TGG | 0.543647 | 1:+58016321 | MsG0180003180.01.T01:CDS |
| ATGGTTTGAGTGGATTCGGA+TGG | 0.551462 | 1:+58016464 | MsG0180003180.01.T01:CDS |
| TTGGACTACTGCTATGGATG+GGG | 0.554651 | 1:+58016246 | MsG0180003180.01.T01:CDS |
| ATACTTTAGGCAAGGAAGCT+GGG | 0.561001 | 1:-58017105 | None:intergenic |
| GCCAATTAGAGATGGCGTTG+CGG | 0.573667 | 1:+58015950 | MsG0180003180.01.T01:CDS |
| GGGATTCTACGACAAATATG+TGG | 0.579377 | 1:+58016485 | MsG0180003180.01.T01:CDS |
| ATGCAAATTCAAAGAGGCCA+AGG | 0.581260 | 1:+58016197 | MsG0180003180.01.T01:CDS |
| ATTGGACTACTGCTATGGAT+GGG | 0.584151 | 1:+58016245 | MsG0180003180.01.T01:CDS |
| ATATTTGCATCAACTAACAA+TGG | 0.592612 | 1:+58016282 | MsG0180003180.01.T01:CDS |
| AATTGGACTACTGCTATGGA+TGG | 0.599809 | 1:+58016244 | MsG0180003180.01.T01:CDS |
| GCTTCAAATAGCAGGAGTCA+TGG | 0.600255 | 1:+58016766 | MsG0180003180.01.T01:CDS |
| GAGTCATGGTGCTACCATAG+AGG | 0.605019 | 1:+58016780 | MsG0180003180.01.T01:CDS |
| ATGCATCAGCATTCTTAACA+AGG | 0.609163 | 1:-58017135 | None:intergenic |
| AGTGGAGAGCCAATTAGAGA+TGG | 0.609329 | 1:+58015942 | MsG0180003180.01.T01:CDS |
| AAATGAAAATGATTCTCAAG+AGG | 0.613316 | 1:+58015881 | MsG0180003180.01.T01:CDS |
| GTACATGTATACTTTAGGCA+AGG | 0.641875 | 1:-58017113 | None:intergenic |
| CAGAGTAAGAGTGCTAATGG+TGG | 0.647513 | 1:+58017046 | MsG0180003180.01.T01:intron |
| AATTCCAATTGATAACCGCA+AGG | 0.651275 | 1:+58017174 | MsG0180003180.01.T01:CDS |
| CAACCAAACTCTAATAGATG+AGG | 0.655813 | 1:+58015842 | MsG0180003180.01.T01:CDS |
| AAGAGGCCAAGGAAATCCAA+AGG | 0.657202 | 1:+58016208 | MsG0180003180.01.T01:CDS |
| ATATGGATGCAAATTCAAAG+AGG | 0.687133 | 1:+58016191 | MsG0180003180.01.T01:CDS |
| TGAGATGTAACATTTCCTTG+CGG | 0.688770 | 1:-58017189 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATAATAAAACGGTAT+AGG | - | Chr1:58016673-58016692 | None:intergenic | 15.0% |
| !! | TTGGCTAATTTATAATAAAA+CGG | - | Chr1:58016679-58016698 | None:intergenic | 15.0% |
| !!! | ATTTTTGAGTTTGTAATTTT+TGG | + | Chr1:58016069-58016088 | MsG0180003180.01.T01:intron | 15.0% |
| !!! | TTTATCTTTTCTTTAGAAAT+TGG | - | Chr1:58016388-58016407 | None:intergenic | 15.0% |
| !!! | TTTTGAATGAATTTTATTTG+TGG | + | Chr1:58016041-58016060 | MsG0180003180.01.T01:intron | 15.0% |
| !! | AAATATGAGTTTGTAATTTG+TGG | + | Chr1:58016095-58016114 | MsG0180003180.01.T01:intron | 20.0% |
| !!! | AGGTAGTATTTACTTTTAAT+GGG | + | Chr1:58016542-58016561 | MsG0180003180.01.T01:intron | 20.0% |
| !!! | TATAAATTAGCCAAACTTTT+TGG | + | Chr1:58016685-58016704 | MsG0180003180.01.T01:CDS | 20.0% |
| ! | AAATGAAAATGATTCTCAAG+AGG | + | Chr1:58015881-58015900 | MsG0180003180.01.T01:CDS | 25.0% |
| ! | AATGAAAATGATTCTCAAGA+GGG | + | Chr1:58015882-58015901 | MsG0180003180.01.T01:CDS | 25.0% |
| ! | ATATTTGCATCAACTAACAA+TGG | + | Chr1:58016282-58016301 | MsG0180003180.01.T01:CDS | 25.0% |
| ! | CATAAGAATAACAACTCATT+AGG | - | Chr1:58016006-58016025 | None:intergenic | 25.0% |
| ! | CTAACAATGGGAAATAAAAA+TGG | + | Chr1:58016295-58016314 | MsG0180003180.01.T01:CDS | 25.0% |
| ! | GATGTGTTTAGTATTAGATA+TGG | + | Chr1:58016174-58016193 | MsG0180003180.01.T01:intron | 25.0% |
| ! | TATTTGCATCAACTAACAAT+GGG | + | Chr1:58016283-58016302 | MsG0180003180.01.T01:CDS | 25.0% |
| !! | TGAAACCAATGAAGTTATTT+TGG | + | Chr1:58016819-58016838 | MsG0180003180.01.T01:CDS | 25.0% |
| !!! | GAGGTAGTATTTACTTTTAA+TGG | + | Chr1:58016541-58016560 | MsG0180003180.01.T01:intron | 25.0% |
| ACAAGGTACATGTATACTTT+AGG | - | Chr1:58017121-58017140 | None:intergenic | 30.0% | |
| ATATGGATGCAAATTCAAAG+AGG | + | Chr1:58016191-58016210 | MsG0180003180.01.T01:CDS | 30.0% | |
| CAAATGATCTATTTCCTCTA+TGG | - | Chr1:58016797-58016816 | None:intergenic | 30.0% | |
| CATAGAGGAAATAGATCATT+TGG | + | Chr1:58016795-58016814 | MsG0180003180.01.T01:CDS | 30.0% | |
| TCATCTATTAGAGTTTGGTT+GGG | - | Chr1:58015843-58015862 | None:intergenic | 30.0% | |
| TCTTGAGAAGTAGAAATAGA+AGG | - | Chr1:58016898-58016917 | None:intergenic | 30.0% | |
| TGAAAAACATCAAAGCAAAG+TGG | + | Chr1:58016416-58016435 | MsG0180003180.01.T01:CDS | 30.0% | |
| ! | GATGCATTGAAAGCTTTTAA+TGG | + | Chr1:58017151-58017170 | MsG0180003180.01.T01:CDS | 30.0% |
| ! | GGATTGCATTTGAGTTTAAA+TGG | + | Chr1:58016116-58016135 | MsG0180003180.01.T01:intron | 30.0% |
| ! | TCGATCTTTTCCAAAAAGTT+TGG | - | Chr1:58016698-58016717 | None:intergenic | 30.0% |
| ! | TTCCAAGACTTTAAAGACAA+TGG | + | Chr1:58016987-58017006 | MsG0180003180.01.T01:intron | 30.0% |
| ! | TTCTGAAAAAGGTCATAACA+AGG | - | Chr1:58016445-58016464 | None:intergenic | 30.0% |
| !! | AACCATTGTCTTTAAAGTCT+TGG | - | Chr1:58016992-58017011 | None:intergenic | 30.0% |
| !! | TCTTTAGAAATTGGTTTGTC+CGG | - | Chr1:58016379-58016398 | None:intergenic | 30.0% |
| !!! | TGTTATGACCTTTTTCAGAA+TGG | + | Chr1:58016445-58016464 | MsG0180003180.01.T01:CDS | 30.0% |
| ATGCATCAGCATTCTTAACA+AGG | - | Chr1:58017138-58017157 | None:intergenic | 35.0% | |
| ATTTCCTTGCGGTTATCAAT+TGG | - | Chr1:58017181-58017200 | None:intergenic | 35.0% | |
| CAACCAAACTCTAATAGATG+AGG | + | Chr1:58015842-58015861 | MsG0180003180.01.T01:CDS | 35.0% | |
| CATCTATTAGAGTTTGGTTG+GGG | - | Chr1:58015842-58015861 | None:intergenic | 35.0% | |
| CCTCTCCAAAATAACTTCAT+TGG | - | Chr1:58016827-58016846 | None:intergenic | 35.0% | |
| CTCATCTATTAGAGTTTGGT+TGG | - | Chr1:58015844-58015863 | None:intergenic | 35.0% | |
| GACTAAGAAACGAGCAAAAA+AGG | + | Chr1:58016933-58016952 | MsG0180003180.01.T01:CDS | 35.0% | |
| GTACATGTATACTTTAGGCA+AGG | - | Chr1:58017116-58017135 | None:intergenic | 35.0% | |
| TAGTCCAATTGCATGTTTCT+AGG | - | Chr1:58016234-58016253 | None:intergenic | 35.0% | |
| TGAGATGTAACATTTCCTTG+CGG | - | Chr1:58017192-58017211 | None:intergenic | 35.0% | |
| TGGGCTGAATTAGTTGAAAT+TGG | + | Chr1:58017076-58017095 | MsG0180003180.01.T01:CDS | 35.0% | |
| ! | AATTCCAATTGATAACCGCA+AGG | + | Chr1:58017174-58017193 | MsG0180003180.01.T01:CDS | 35.0% |
| ! | AGTGTTTAAAATGAGCTCAG+AGG | + | Chr1:58017012-58017031 | MsG0180003180.01.T01:intron | 35.0% |
| ! | CACTCAAACCATTCTGAAAA+AGG | - | Chr1:58016456-58016475 | None:intergenic | 35.0% |
| ! | GTAGAAATAGAAGGCCTTTT+CGG | - | Chr1:58016889-58016908 | None:intergenic | 35.0% |
| ! | TGCTAATGGTGGAGATATTT+GGG | + | Chr1:58017057-58017076 | MsG0180003180.01.T01:CDS | 35.0% |
| !! | AAACAGAGTAAGAGTGCTAA+TGG | + | Chr1:58017043-58017062 | MsG0180003180.01.T01:intron | 35.0% |
| !! | CTTTAGAAATTGGTTTGTCC+GGG | - | Chr1:58016378-58016397 | None:intergenic | 35.0% |
| !! | CTTTGAAATGAGAGCAAGAA+AGG | + | Chr1:58016744-58016763 | MsG0180003180.01.T01:CDS | 35.0% |
| !!! | CCAATGAAGTTATTTTGGAG+AGG | + | Chr1:58016824-58016843 | MsG0180003180.01.T01:CDS | 35.0% |
| !!! | CTTTTTCAGAATGGTTTGAG+TGG | + | Chr1:58016454-58016473 | MsG0180003180.01.T01:CDS | 35.0% |
| AAGGCCTAGAAACATGCAAT+TGG | + | Chr1:58016227-58016246 | MsG0180003180.01.T01:CDS | 40.0% | |
| AATTGGACTACTGCTATGGA+TGG | + | Chr1:58016244-58016263 | MsG0180003180.01.T01:CDS | 40.0% | |
| ACAGGAGATCATGAAGATAC+AGG | + | Chr1:58016721-58016740 | MsG0180003180.01.T01:CDS | 40.0% | |
| AGAGTTGAAGAATCACTTCC+CGG | + | Chr1:58016357-58016376 | MsG0180003180.01.T01:CDS | 40.0% | |
| ATACTTTAGGCAAGGAAGCT+GGG | - | Chr1:58017108-58017127 | None:intergenic | 40.0% | |
| ATGCAAATTCAAAGAGGCCA+AGG | + | Chr1:58016197-58016216 | MsG0180003180.01.T01:CDS | 40.0% | |
| ATGCAATTGGACTACTGCTA+TGG | + | Chr1:58016240-58016259 | MsG0180003180.01.T01:CDS | 40.0% | |
| ATTCCAGCATTTCTCCGAAA+AGG | + | Chr1:58016872-58016891 | MsG0180003180.01.T01:CDS | 40.0% | |
| ATTGGACTACTGCTATGGAT+GGG | + | Chr1:58016245-58016264 | MsG0180003180.01.T01:CDS | 40.0% | |
| CAAGAAAGGCTTCAAATAGC+AGG | + | Chr1:58016758-58016777 | MsG0180003180.01.T01:CDS | 40.0% | |
| CTCAAGATGTGTCATCATCT+AGG | + | Chr1:58016911-58016930 | MsG0180003180.01.T01:CDS | 40.0% | |
| GACAATGTTGATGCAGTTAG+TGG | + | Chr1:58015924-58015943 | MsG0180003180.01.T01:CDS | 40.0% | |
| GCACCTCATCTATTAGAGTT+TGG | - | Chr1:58015848-58015867 | None:intergenic | 40.0% | |
| GGGATTCTACGACAAATATG+TGG | + | Chr1:58016485-58016504 | MsG0180003180.01.T01:CDS | 40.0% | |
| TAAAATGAGCTCAGAGGAGT+TGG | + | Chr1:58017018-58017037 | MsG0180003180.01.T01:intron | 40.0% | |
| TAGTATGACATCAAGCGCTA+TGG | + | Chr1:58016321-58016340 | MsG0180003180.01.T01:CDS | 40.0% | |
| TATACTTTAGGCAAGGAAGC+TGG | - | Chr1:58017109-58017128 | None:intergenic | 40.0% | |
| TTTGGAAAAGATCGAGCAAC+AGG | + | Chr1:58016703-58016722 | MsG0180003180.01.T01:CDS | 40.0% | |
| ! | CAGAATGGTTTGAGTGGATT+CGG | + | Chr1:58016460-58016479 | MsG0180003180.01.T01:CDS | 40.0% |
| ! | GTGCTAATGGTGGAGATATT+TGG | + | Chr1:58017056-58017075 | MsG0180003180.01.T01:CDS | 40.0% |
| !! | ATTGCATGTTTCTAGGCCTT+TGG | - | Chr1:58016227-58016246 | None:intergenic | 40.0% |
| AAAAACCCGAAGCTGCTGAA+TGG | + | Chr1:58016638-58016657 | MsG0180003180.01.T01:CDS | 45.0% | |
| AAGAGGCCAAGGAAATCCAA+AGG | + | Chr1:58016208-58016227 | MsG0180003180.01.T01:CDS | 45.0% | |
| AAGCGCTATGGACAACATTC+TGG | + | Chr1:58016333-58016352 | MsG0180003180.01.T01:CDS | 45.0% | |
| AGTGGAGAGCCAATTAGAGA+TGG | + | Chr1:58015942-58015961 | MsG0180003180.01.T01:CDS | 45.0% | |
| GACTGCTGAAGATGACGTTT+GGG | + | Chr1:58016507-58016526 | MsG0180003180.01.T01:CDS | 45.0% | |
| GCTTCAAATAGCAGGAGTCA+TGG | + | Chr1:58016766-58016785 | MsG0180003180.01.T01:CDS | 45.0% | |
| TCTAGGCCTTTGGATTTCCT+TGG | - | Chr1:58016217-58016236 | None:intergenic | 45.0% | |
| TTGGACTACTGCTATGGATG+GGG | + | Chr1:58016246-58016265 | MsG0180003180.01.T01:CDS | 45.0% | |
| ! | ATGGTTTGAGTGGATTCGGA+TGG | + | Chr1:58016464-58016483 | MsG0180003180.01.T01:CDS | 45.0% |
| ! | TGGTTTGAGTGGATTCGGAT+GGG | + | Chr1:58016465-58016484 | MsG0180003180.01.T01:CDS | 45.0% |
| !! | CAGAGTAAGAGTGCTAATGG+TGG | + | Chr1:58017046-58017065 | MsG0180003180.01.T01:intron | 45.0% |
| CCAATTAGAGATGGCGTTGC+GGG | + | Chr1:58015951-58015970 | MsG0180003180.01.T01:CDS | 50.0% | |
| GCCAATTAGAGATGGCGTTG+CGG | + | Chr1:58015950-58015969 | MsG0180003180.01.T01:CDS | 50.0% | |
| GGACTGCTGAAGATGACGTT+TGG | + | Chr1:58016506-58016525 | MsG0180003180.01.T01:CDS | 50.0% | |
| GTGTCTCCATTCAGCAGCTT+CGG | - | Chr1:58016647-58016666 | None:intergenic | 50.0% | |
| TGTCTCCATTCAGCAGCTTC+GGG | - | Chr1:58016646-58016665 | None:intergenic | 50.0% | |
| ! | AGGCCTTTTCGGAGAAATGC+TGG | - | Chr1:58016878-58016897 | None:intergenic | 50.0% |
| ! | CGTTTGGGACAGGCTAATTG+AGG | + | Chr1:58016522-58016541 | MsG0180003180.01.T01:CDS | 50.0% |
| ! | CTGAAGATGACGTTTGGGAC+AGG | + | Chr1:58016512-58016531 | MsG0180003180.01.T01:CDS | 50.0% |
| !! | GAGTCATGGTGCTACCATAG+AGG | + | Chr1:58016780-58016799 | MsG0180003180.01.T01:CDS | 50.0% |
| ATGGCGTTGCGGGTTCTATG+TGG | + | Chr1:58015961-58015980 | MsG0180003180.01.T01:intron | 55.0% | |
| CCCGCAACGCCATCTCTAAT+TGG | - | Chr1:58015954-58015973 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 58015828 | 58017237 | 58015828 | ID=MsG0180003180.01;Name=MsG0180003180.01 |
| Chr1 | mRNA | 58015828 | 58017237 | 58015828 | ID=MsG0180003180.01.T01;Parent=MsG0180003180.01;Name=MsG0180003180.01.T01;_AED=0.49;_eAED=0.51;_QI=0|0|0|1|1|1|4|0|336 |
| Chr1 | exon | 58015828 | 58015972 | 58015828 | ID=MsG0180003180.01.T01:exon:48900;Parent=MsG0180003180.01.T01 |
| Chr1 | exon | 58016185 | 58016543 | 58016185 | ID=MsG0180003180.01.T01:exon:48901;Parent=MsG0180003180.01.T01 |
| Chr1 | exon | 58016637 | 58016954 | 58016637 | ID=MsG0180003180.01.T01:exon:48902;Parent=MsG0180003180.01.T01 |
| Chr1 | exon | 58017049 | 58017237 | 58017049 | ID=MsG0180003180.01.T01:exon:48903;Parent=MsG0180003180.01.T01 |
| Chr1 | CDS | 58015828 | 58015972 | 58015828 | ID=MsG0180003180.01.T01:cds;Parent=MsG0180003180.01.T01 |
| Chr1 | CDS | 58016185 | 58016543 | 58016185 | ID=MsG0180003180.01.T01:cds;Parent=MsG0180003180.01.T01 |
| Chr1 | CDS | 58016637 | 58016954 | 58016637 | ID=MsG0180003180.01.T01:cds;Parent=MsG0180003180.01.T01 |
| Chr1 | CDS | 58017049 | 58017237 | 58017049 | ID=MsG0180003180.01.T01:cds;Parent=MsG0180003180.01.T01 |
| Gene Sequence |
| Protein sequence |
