AlfalfaGEDB | MsG0680031355.01

M. sativa cultivar ZhongmuNo.1 / MsG0680031355.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031355.01.T01	XP_013451322.1	83.459	133	8	2	12	144	12	130	2.58E-63	200

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031355.01.T01	A0A072U6V3	83.459	133	8	2	12	144	12	130	1.23e-63	200

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0680031355.01	0.828285	9.788521e-55	9.685804e-52
MsG0080047944.01	MsG0680031355.01	0.847134	1.401665e-59	2.467477e-56
MsG0080047957.01	MsG0680031355.01	0.831353	1.751687e-55	1.896060e-52
MsG0080047959.01	MsG0680031355.01	0.837326	5.553522e-57	7.188789e-54
MsG0080048683.01	MsG0680031355.01	0.809834	1.555767e-50	9.230831e-48
MsG0080048817.01	MsG0680031355.01	0.814662	1.374110e-51	9.276003e-49
MsG0080048874.01	MsG0680031355.01	0.810474	1.132028e-50	6.830320e-48
MsG0180000240.01	MsG0680031355.01	-0.802602	5.190839e-49	2.553357e-46
MsG0180000271.01	MsG0680031355.01	0.808406	3.146906e-50	1.797860e-47
MsG0180000470.01	MsG0680031355.01	0.844915	5.622815e-59	9.215147e-56

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031355.01.T01	MTR_6g018800	83.459	133	8	2	12	144	12	130	3.12e-67	200

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031355.01.T01	AT5G16160	37.584	149	63	4	1	144	10	133	4.26e-20	80.5

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Find 0 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAGCCAAAATTGCATT+GGG	-	Chr6:18831716-18831735	MsG0680031355.01.T01:intron	30.0%
AAAGGGGAAAAATTGCAATA+TGG	+	Chr6:18830075-18830094	None:intergenic	30.0%
AATGTTCACTCAATGTTAAC+AGG	+	Chr6:18831361-18831380	None:intergenic	30.0%
ATGTTCACTCAATGTTAACA+GGG	+	Chr6:18831360-18831379	None:intergenic	30.0%
CGATTATGGATCACATAAAA+CGG	+	Chr6:18832160-18832179	None:intergenic	30.0%
CTAAATAACTAGCGTATGTT+TGG	-	Chr6:18830915-18830934	MsG0680031355.01.T01:intron	30.0%
CTTACCAAAAACAGATTAGT+CGG	+	Chr6:18831173-18831192	None:intergenic	30.0%
CTTATTTCAATAAGCTCTCT+AGG	+	Chr6:18830326-18830345	None:intergenic	30.0%
CTTCCTAATTAGAAAAGATG+CGG	-	Chr6:18831046-18831065	MsG0680031355.01.T01:CDS	30.0%
GTTAACATTGAGTGAACATT+TGG	-	Chr6:18831361-18831380	MsG0680031355.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	18829897	18832821	18829897	ID=MsG0680031355.01;
Chr6	mRNA	18829897	18832821	18829897	ID=MsG0680031355.01.T01;Parent=MsG0680031355.01
Chr6	CDS	18829897	18829939	18829897	ID=MsG0680031355.01.T01.cds;Parent=MsG0680031355.01.T01
Chr6	CDS	18830979	18831195	18830979	ID=MsG0680031355.01.T01.cds;Parent=MsG0680031355.01.T01
Chr6	CDS	18831266	18831326	18831266	ID=MsG0680031355.01.T01.cds;Parent=MsG0680031355.01.T01
Chr6	CDS	18832708	18832821	18832708	ID=MsG0680031355.01.T01.cds;Parent=MsG0680031355.01.T01

Gene Sequence

>MsG0680031355.01.T01

ATGGAAAAGGAAGAAGAAGATCGAAGAAGAGAAGCAGCAATTTCATCAACACCTTGTCTTCAACCCAATTTCAATCCCAAAGGCGTTTCTCAAGATCAACTCTCCAAGTTTCGTGAACTGCACAGAAAGCGATTACAGCTAAAGTCAAAATCAAAGTTTAAGACAAAACCCAAAGTTGATATGTATTTTGTGTGTTCTGAATTGGGTTCTGCAGATGACGCCAAAAAGAAGGCACGAGGCAATGATGTATATAGCAAGAACAGTGGAGCTCAAGGATTCAAAGTTGATAACAAAGAACAAAGCCTCTTGAACAATTGTGAAAGCTTTGATTCGAAAAAGGAAGACTCAAAGGGTGGTGTATTTGCATCAAAGAAGCCAAAATTGCATTGGGGGCTTGACACCAAGGAGAGGTGGGAGAGGAAATCCAACATGTAG

Protein sequence

>MsG0680031355.01.T01

MEKEEEDRRREAAISSTPCLQPNFNPKGVSQDQLSKFRELHRKRLQLKSKSKFKTKPKVDMYFVCSELGSADDAKKKARGNDVYSKNSGAQGFKVDNKEQSLLNNCESFDSKKEDSKGGVFASKKPKLHWGLDTKERWERKSNM*