AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004480.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004480.01.T01 MTR_1g080760 96.610 118 4 0 1 118 56 173 6.53e-77 228
MsG0180004480.01.T01 MTR_7g096220 55.833 120 53 0 3 122 62 181 3.05e-39 132
MsG0180004480.01.T01 MTR_1g070480 52.174 115 55 0 2 116 54 168 3.81e-30 108
MsG0180004480.01.T01 MTR_2g100260 40.310 129 71 2 3 126 60 187 4.39e-26 98.2
MsG0180004480.01.T01 MTR_6g092690 40.945 127 74 1 3 128 60 186 9.08e-25 95.1
MsG0180004480.01.T01 MTR_5g083490 42.623 122 68 1 3 122 75 196 5.56e-23 90.9
MsG0180004480.01.T01 MTR_4g014060 40.496 121 70 1 2 120 82 202 5.10e-22 88.6
MsG0180004480.01.T01 MTR_0562s0010 40.496 121 70 1 2 120 82 202 5.10e-22 88.6
MsG0180004480.01.T01 MTR_2g100270 47.414 116 61 0 3 118 59 174 6.54e-22 87.4
MsG0180004480.01.T01 MTR_8g016150 54.128 109 50 0 3 111 58 166 8.30e-22 87.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004480.01.T01 AT3G13710 47.009 117 62 0 3 119 60 176 2.64e-32 114
MsG0180004480.01.T01 AT1G55190 47.863 117 61 0 3 119 60 176 2.95e-32 114
MsG0180004480.01.T01 AT1G08770 44.286 140 75 2 1 138 69 207 1.64e-31 112
MsG0180004480.01.T01 AT3G13720 46.154 117 63 0 3 119 60 176 1.59e-28 104
MsG0180004480.01.T01 AT2G40380 42.623 122 68 1 3 122 70 191 8.86e-25 95.5
MsG0180004480.01.T01 AT2G38360 39.024 123 73 1 2 122 77 199 9.38e-25 95.5
MsG0180004480.01.T01 AT5G01640 36.296 135 80 2 3 135 78 208 6.05e-23 90.9
MsG0180004480.01.T01 AT1G17700 47.009 117 61 1 3 118 60 176 9.61e-23 89.4
MsG0180004480.01.T01 AT3G56110 40.984 122 70 1 3 122 68 189 2.30e-22 89.4
MsG0180004480.01.T01 AT3G56110 40.984 122 70 1 3 122 68 189 2.30e-22 89.4
MsG0180004480.01.T01 AT3G56110 40.984 122 70 1 3 122 68 189 2.30e-22 89.4
MsG0180004480.01.T01 AT3G56110 40.984 122 70 1 3 122 68 189 2.30e-22 89.4
MsG0180004480.01.T01 AT5G05380 45.082 122 65 1 3 122 71 192 5.29e-22 88.6
MsG0180004480.01.T01 AT5G05380 45.082 122 65 1 3 122 122 243 1.07e-21 88.6
MsG0180004480.01.T01 AT5G05380 45.082 122 65 1 3 122 114 235 1.20e-21 88.6
MsG0180004480.01.T01 AT5G05380 45.082 122 65 1 3 122 138 259 1.55e-21 88.6
MsG0180004480.01.T01 AT1G04260 38.053 113 70 0 3 115 44 156 1.10e-19 81.6
MsG0180004480.01.T01 AT5G07110 36.885 122 75 1 3 122 68 189 1.31e-19 82.0
MsG0180004480.01.T01 AT4G00005 35.644 101 63 1 1 99 1 101 7.34e-13 62.0
MsG0180004480.01.T01 AT4G29658 32.231 121 72 2 3 116 58 175 9.55e-12 60.8
MsG0180004480.01.T01 AT5G56230 30.081 123 85 1 1 122 57 179 1.45e-11 60.1

Find 51 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAGACTGAAGACCCATTT+TGG 0.273150 1:-78678054 None:intergenic
GGCTTGTTGCTACTCATGTT+GGG 0.295118 1:+78677117 MsG0180004480.01.T01:CDS
GAAATTGTGAAGGACCAAAA+TGG 0.298946 1:+78678040 MsG0180004480.01.T01:CDS
TCATGTTGGGGTTAATGTTT+TGG 0.303740 1:+78677130 MsG0180004480.01.T01:CDS
GATCGCATTGAATCAGAATT+AGG 0.316951 1:+78678451 MsG0180004480.01.T01:three_prime_UTR
TTGGGAGTTGTGAGTGTTGT+TGG 0.327271 1:+78677095 MsG0180004480.01.T01:CDS
AAGAAAACGATCATGGAAAC+TGG 0.334504 1:-78676975 None:intergenic
GCATTGTCAAATTGATGATT+TGG 0.349472 1:+78678269 MsG0180004480.01.T01:CDS
ATTGTTTGTCAGGACTGAAT+TGG 0.390733 1:+78678009 MsG0180004480.01.T01:intron
GGGCTTGTTGCTACTCATGT+TGG 0.391763 1:+78677116 MsG0180004480.01.T01:CDS
ATTGTTGGTGTTGTTGTTGT+GGG 0.393325 1:+78677161 MsG0180004480.01.T01:CDS
TGGGAGTTGTGAGTGTTGTT+GGG 0.403650 1:+78677096 MsG0180004480.01.T01:CDS
AATTGATGATTTGGTTAAGA+AGG 0.415816 1:+78678278 MsG0180004480.01.T01:CDS
TTGTTTGTCAGGACTGAATT+GGG 0.423371 1:+78678010 MsG0180004480.01.T01:intron
CGAATTGTGATATGTGGTTT+GGG 0.430591 1:+78677077 MsG0180004480.01.T01:CDS
TGGTCACAGCAGCGGTGAAT+TGG 0.430955 1:+78678324 MsG0180004480.01.T01:three_prime_UTR
ATTGATGATTTGGTTAAGAA+GGG 0.443836 1:+78678279 MsG0180004480.01.T01:CDS
AGTTGAATTGAAAGTAGGTT+AGG 0.446139 1:-78676905 None:intergenic
TCGAATTGTGATATGTGGTT+TGG 0.452735 1:+78677076 MsG0180004480.01.T01:CDS
GATTGTTGGTGTTGTTGTTG+TGG 0.467786 1:+78677160 MsG0180004480.01.T01:CDS
GTTAATGTAGTAGTAATAGA+TGG 0.474812 1:+78678527 MsG0180004480.01.T01:three_prime_UTR
GTTGTTGTTGTGGGTTTGCA+TGG 0.477917 1:+78677170 MsG0180004480.01.T01:CDS
AAATTGTGAAGGACCAAAAT+GGG 0.485886 1:+78678041 MsG0180004480.01.T01:CDS
TTGTATGTTGATGAGGAAAG+TGG 0.495542 1:+78677215 MsG0180004480.01.T01:CDS
TGGAAACTGGGTGCCAAAGA+AGG 0.500700 1:-78676962 None:intergenic
TTTCTGTACTTCTCGCGAGA+TGG 0.506881 1:+78677020 MsG0180004480.01.T01:CDS
AAGGATCAAGAAAACGATCA+TGG 0.515345 1:-78676982 None:intergenic
GATGATCGAATTGTGATATG+TGG 0.524967 1:+78677071 MsG0180004480.01.T01:CDS
AGGTTAGGTTTCGACGGAGA+CGG 0.527715 1:-78676890 None:intergenic
AATGTAGTAGTAATAGATGG+TGG 0.535636 1:+78678530 MsG0180004480.01.T01:three_prime_UTR
TGTATGTTGATGAGGAAAGT+GGG 0.535988 1:+78677216 MsG0180004480.01.T01:CDS
GAAAGAACCACGCGACGAGA+AGG 0.536086 1:-78677001 None:intergenic
GGTGTAGTTGAATTGAAAGT+AGG 0.542306 1:-78676910 None:intergenic
TCTTGATCCTTCTCGTCGCG+TGG 0.549847 1:+78676994 MsG0180004480.01.T01:CDS
GCTTGTTGCTACTCATGTTG+GGG 0.554619 1:+78677118 MsG0180004480.01.T01:CDS
GAAAGTAGGTTAGGTTTCGA+CGG 0.554632 1:-78676896 None:intergenic
TGAGGATTTGTATGTTGATG+AGG 0.571243 1:+78677208 MsG0180004480.01.T01:CDS
AATTCGAGTGTATACGTGCA+AGG 0.581395 1:-78678216 None:intergenic
GGTCCTTCACAATTTCCTTG+TGG 0.586945 1:-78678033 None:intergenic
CAGGACTGAATTGGGCCACA+AGG 0.594103 1:+78678018 MsG0180004480.01.T01:intron
AGTAGACTTCAAAGCTGAGT+TGG 0.597419 1:+78678304 MsG0180004480.01.T01:exon
AGCTGAGTTGGTCACAGCAG+CGG 0.598267 1:+78678316 MsG0180004480.01.T01:three_prime_UTR
GGCTGAGGAAAACGATGAGG+AGG 0.605209 1:-78676941 None:intergenic
ATGTAGTAGTAATAGATGGT+GGG 0.606860 1:+78678531 MsG0180004480.01.T01:three_prime_UTR
AGAAAACGATCATGGAAACT+GGG 0.617656 1:-78676974 None:intergenic
CTGGGTGCCAAAGAAGGCTG+AGG 0.620367 1:-78676956 None:intergenic
ATTCGAGTGTATACGTGCAA+GGG 0.621200 1:-78678215 None:intergenic
GAAAACGATGAGGAGGATTG+TGG 0.631475 1:-78676934 None:intergenic
GGGCCACAAGGAAATTGTGA+AGG 0.640268 1:+78678030 MsG0180004480.01.T01:CDS
AACGATGAGGAGGATTGTGG+TGG 0.680379 1:-78676931 None:intergenic
GAAGGCTGAGGAAAACGATG+AGG 0.707176 1:-78676944 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAGTGTTTTTTTTCTTT+CGG + Chr1:78677312-78677331 MsG0180004480.01.T01:intron 15.0%
!!! TTTTTTAATGTAGTAATAGA+TGG + Chr1:78677659-78677678 MsG0180004480.01.T01:intron 15.0%
!! AAAATGTATGGAACTAATTT+AGG - Chr1:78677900-78677919 None:intergenic 20.0%
!! AGTATTACATAATCATTTCA+AGG - Chr1:78678132-78678151 None:intergenic 20.0%
!! AGTTAATGATTTAGTTAAGA+AGG + Chr1:78677400-78677419 MsG0180004480.01.T01:intron 20.0%
!! GTTAATGATTTAGTTAAGAA+GGG + Chr1:78677401-78677420 MsG0180004480.01.T01:intron 20.0%
!!! ATAGATTTGAGAATTTTGTA+AGG + Chr1:78677629-78677648 MsG0180004480.01.T01:intron 20.0%
!!! ATAGATTTGAGAATTTTTAG+AGG + Chr1:78678494-78678513 MsG0180004480.01.T01:three_prime_UTR 20.0%
! AAATTGTGAAGAACCAAATT+TGG - Chr1:78677839-78677858 None:intergenic 25.0%
! AATTTAGTCAAGACCAAATT+TGG + Chr1:78677823-78677842 MsG0180004480.01.T01:intron 25.0%
! ATACCCAAAAAACTAACAAA+TGG - Chr1:78677473-78677492 None:intergenic 25.0%
! ATTTAGTTAAGAAGGGAAAA+TGG + Chr1:78677408-78677427 MsG0180004480.01.T01:intron 25.0%
! CAACAAATCAAATGCAAAAA+TGG - Chr1:78677741-78677760 None:intergenic 25.0%
! CGTCAAATCATATGTAAAAA+TGG - Chr1:78678593-78678612 None:intergenic 25.0%
! GAAAATGTCATGAACTAATT+TGG + Chr1:78677982-78678001 MsG0180004480.01.T01:intron 25.0%
! GTTAATGTAGTAGTAATAGA+TGG + Chr1:78678527-78678546 MsG0180004480.01.T01:three_prime_UTR 25.0%
! GTTCGATTAAAAACAATAAG+AGG - Chr1:78677047-78677066 None:intergenic 25.0%
! TACCCAAAAAACTAACAAAT+GGG - Chr1:78677472-78677491 None:intergenic 25.0%
!! AGTTCCATACATTTTTGTAA+GGG + Chr1:78677905-78677924 MsG0180004480.01.T01:intron 25.0%
!! TAGTTCCATACATTTTTGTA+AGG + Chr1:78677904-78677923 MsG0180004480.01.T01:intron 25.0%
!! TTCATGACATTTTCATACAA+GGG - Chr1:78677976-78677995 None:intergenic 25.0%
!! TTTAGGTATCATTCTTTTGT+CGG - Chr1:78677883-78677902 None:intergenic 25.0%
!!! AATTGATGATTTGGTTAAGA+AGG + Chr1:78678278-78678297 MsG0180004480.01.T01:CDS 25.0%
!!! ATTGATGATTTGGTTAAGAA+GGG + Chr1:78678279-78678298 MsG0180004480.01.T01:CDS 25.0%
!!! TATTGTTTTTAATCGAACGT+TGG + Chr1:78677049-78677068 MsG0180004480.01.T01:CDS 25.0%
!!! TTTTTTTTCTTTCGGTTTCA+CGG + Chr1:78677320-78677339 MsG0180004480.01.T01:intron 25.0%
AAAAATACTATGACCAGCAT+AGG - Chr1:78678095-78678114 None:intergenic 30.0%
AAAAGAAAAATCAACACGCT+TGG - Chr1:78678350-78678369 None:intergenic 30.0%
AAAATACTATGACCAGCATA+GGG - Chr1:78678094-78678113 None:intergenic 30.0%
AAATTGTGAAGGACCAAAAT+GGG + Chr1:78678041-78678060 MsG0180004480.01.T01:CDS 30.0%
AATGAGTTAGGATCTGAATT+GGG - Chr1:78677932-78677951 None:intergenic 30.0%
AATGTAGTAGTAATAGATGG+TGG + Chr1:78678530-78678549 MsG0180004480.01.T01:three_prime_UTR 30.0%
AGTTGAATTGAAAGTAGGTT+AGG - Chr1:78676908-78676927 None:intergenic 30.0%
ATCAAATGCAAAAATGGAAC+TGG - Chr1:78677735-78677754 None:intergenic 30.0%
ATGAATTGATCGCATTGAAT+TGG + Chr1:78677575-78677594 MsG0180004480.01.T01:intron 30.0%
ATGTAGTAGTAATAGATGGT+GGG + Chr1:78678531-78678550 MsG0180004480.01.T01:three_prime_UTR 30.0%
TACTTCAAAACATTCAAAGC+AGG - Chr1:78677360-78677379 None:intergenic 30.0%
TCAAATGCAAAAATGGAACT+GGG - Chr1:78677734-78677753 None:intergenic 30.0%
! GCATTGTCAAATTGATGATT+TGG + Chr1:78678269-78678288 MsG0180004480.01.T01:CDS 30.0%
! GTTCATGACATTTTCATACA+AGG - Chr1:78677977-78677996 None:intergenic 30.0%
! GTTCCATACATTTTTGTAAG+GGG + Chr1:78677906-78677925 MsG0180004480.01.T01:intron 30.0%
! TGTTCAACATTTTCTGTTAC+TGG + Chr1:78678565-78678584 MsG0180004480.01.T01:three_prime_UTR 30.0%
! TTAGGTATCATTCTTTTGTC+GGG - Chr1:78677882-78677901 None:intergenic 30.0%
! TTGAGAATTTTGTAAGGAAG+AGG + Chr1:78677635-78677654 MsG0180004480.01.T01:intron 30.0%
!! ATTTGGTGTTATTGTTTGTC+AGG + Chr1:78677999-78678018 MsG0180004480.01.T01:intron 30.0%
!! TTGAGAATTTTTAGAGGAAG+AGG + Chr1:78678500-78678519 MsG0180004480.01.T01:three_prime_UTR 30.0%
!! TTTTTCTTTTGGGTATTCAG+TGG + Chr1:78678360-78678379 MsG0180004480.01.T01:three_prime_UTR 30.0%
!!! AAGCGTGTTGATTTTTCTTT+TGG + Chr1:78678349-78678368 MsG0180004480.01.T01:three_prime_UTR 30.0%
!!! AGCGTGTTGATTTTTCTTTT+GGG + Chr1:78678350-78678369 MsG0180004480.01.T01:three_prime_UTR 30.0%
!!! ATTTGTTTTTAACCCTATGC+TGG + Chr1:78678079-78678098 MsG0180004480.01.T01:intron 30.0%
!!! GACCCATTTGTTAGTTTTTT+GGG + Chr1:78677467-78677486 MsG0180004480.01.T01:intron 30.0%
!!! TGACCCATTTGTTAGTTTTT+TGG + Chr1:78677466-78677485 MsG0180004480.01.T01:intron 30.0%
AAGAAAACGATCATGGAAAC+TGG - Chr1:78676978-78676997 None:intergenic 35.0%
AAGGATCAAGAAAACGATCA+TGG - Chr1:78676985-78677004 None:intergenic 35.0%
AATGGAATTCAAAGCTGAGT+TGG + Chr1:78677426-78677445 MsG0180004480.01.T01:intron 35.0%
AGAAAACGATCATGGAAACT+GGG - Chr1:78676977-78676996 None:intergenic 35.0%
ATCCTAACTCATTGTAACAG+AGG + Chr1:78677939-78677958 MsG0180004480.01.T01:intron 35.0%
ATTGTTTGTCAGGACTGAAT+TGG + Chr1:78678009-78678028 MsG0180004480.01.T01:intron 35.0%
ATTTCCTCAAATCTGGTACA+GGG + Chr1:78678191-78678210 MsG0180004480.01.T01:intron 35.0%
CAATACAAAAGTAAGAGCCA+CGG - Chr1:78677497-78677516 None:intergenic 35.0%
CAATGAGTTAGGATCTGAAT+TGG - Chr1:78677933-78677952 None:intergenic 35.0%
CGAATTGTGATATGTGGTTT+GGG + Chr1:78677077-78677096 MsG0180004480.01.T01:CDS 35.0%
GAAATTGTGAAGGACCAAAA+TGG + Chr1:78678040-78678059 MsG0180004480.01.T01:CDS 35.0%
GATCGCATTGAATCAGAATT+AGG + Chr1:78678451-78678470 MsG0180004480.01.T01:three_prime_UTR 35.0%
GATGATCGAATTGTGATATG+TGG + Chr1:78677071-78677090 MsG0180004480.01.T01:CDS 35.0%
GGTGTAGTTGAATTGAAAGT+AGG - Chr1:78676913-78676932 None:intergenic 35.0%
TCCTAACTCATTGTAACAGA+GGG + Chr1:78677940-78677959 MsG0180004480.01.T01:intron 35.0%
TCGAATTGTGATATGTGGTT+TGG + Chr1:78677076-78677095 MsG0180004480.01.T01:CDS 35.0%
TGAGGATTTGTATGTTGATG+AGG + Chr1:78677208-78677227 MsG0180004480.01.T01:CDS 35.0%
TTGTTTGTCAGGACTGAATT+GGG + Chr1:78678010-78678029 MsG0180004480.01.T01:intron 35.0%
! AGGTGTGATTTTGTCAATGT+TGG + Chr1:78678471-78678490 MsG0180004480.01.T01:three_prime_UTR 35.0%
! ATCACTTTGTTTATCCTGTG+CGG + Chr1:78677523-78677542 MsG0180004480.01.T01:intron 35.0%
! TAGGTATCATTCTTTTGTCG+GGG - Chr1:78677881-78677900 None:intergenic 35.0%
! TCATGTTGGGGTTAATGTTT+TGG + Chr1:78677130-78677149 MsG0180004480.01.T01:CDS 35.0%
! TGTATGTTGATGAGGAAAGT+GGG + Chr1:78677216-78677235 MsG0180004480.01.T01:CDS 35.0%
! TTGTATGTTGATGAGGAAAG+TGG + Chr1:78677215-78677234 MsG0180004480.01.T01:CDS 35.0%
!! ATTGTTGGTGTTGTTGTTGT+GGG + Chr1:78677161-78677180 MsG0180004480.01.T01:CDS 35.0%
!! CATTTGATTTGTTGCGTTTG+CGG + Chr1:78677747-78677766 MsG0180004480.01.T01:intron 35.0%
!! CGAGTGTAATTTGTTCTTGT+AGG - Chr1:78677275-78677294 None:intergenic 35.0%
!!! CTGTTTTTGTCAATCTCTGT+TGG + Chr1:78677606-78677625 MsG0180004480.01.T01:intron 35.0%
!!! TGGTTCTTTTAGGGTTATTG+AGG + Chr1:78677190-78677209 MsG0180004480.01.T01:CDS 35.0%
!!! TTAGTTTTTTGGGTATTCCG+TGG + Chr1:78677477-78677496 MsG0180004480.01.T01:intron 35.0%
AATTCGAGTGTATACGTGCA+AGG - Chr1:78678219-78678238 None:intergenic 40.0%
AGTAGACTTCAAAGCTGAGT+TGG + Chr1:78678304-78678323 MsG0180004480.01.T01:exon 40.0%
ATTCGAGTGTATACGTGCAA+GGG - Chr1:78678218-78678237 None:intergenic 40.0%
CAAGAAAATCAGACCCACAA+TGG - Chr1:78677687-78677706 None:intergenic 40.0%
CATTTCCTCAAATCTGGTAC+AGG + Chr1:78678190-78678209 MsG0180004480.01.T01:intron 40.0%
CCAGATTTGAGGAAATGAAC+AGG - Chr1:78678187-78678206 None:intergenic 40.0%
CCTGTTCATTTCCTCAAATC+TGG + Chr1:78678184-78678203 MsG0180004480.01.T01:intron 40.0%
GAAAGTAGGTTAGGTTTCGA+CGG - Chr1:78676899-78676918 None:intergenic 40.0%
GGTTCTTCACAATTTCCTTG+CGG + Chr1:78677844-78677863 MsG0180004480.01.T01:intron 40.0%
TCCCTCTGTTACAATGAGTT+AGG - Chr1:78677944-78677963 None:intergenic 40.0%
TGTTACAAGTTTATCCGCAC+AGG - Chr1:78677540-78677559 None:intergenic 40.0%
TGTTCTTGTAGGAGCAACTT+GGG - Chr1:78677264-78677283 None:intergenic 40.0%
TTGTTCTTGTAGGAGCAACT+TGG - Chr1:78677265-78677284 None:intergenic 40.0%
! ACAAGACTGAAGACCCATTT+TGG - Chr1:78678057-78678076 None:intergenic 40.0%
! GGGTTTGCATGGTTCTTTTA+GGG + Chr1:78677181-78677200 MsG0180004480.01.T01:CDS 40.0%
! TGGGTTTGCATGGTTCTTTT+AGG + Chr1:78677180-78677199 MsG0180004480.01.T01:CDS 40.0%
!! AGTAATAGATGGTGCCATTG+TGG + Chr1:78677670-78677689 MsG0180004480.01.T01:intron 40.0%
!! GATTGTTGGTGTTGTTGTTG+TGG + Chr1:78677160-78677179 MsG0180004480.01.T01:CDS 40.0%
!! GTAATAGATGGTGCCATTGT+GGG + Chr1:78677671-78677690 MsG0180004480.01.T01:intron 40.0%
!! TGTTGGGGTTAATGTTTTGG+TGG + Chr1:78677133-78677152 MsG0180004480.01.T01:CDS 40.0%
!!! GTTTTGGTGGCTTTGATTGT+TGG + Chr1:78677146-78677165 MsG0180004480.01.T01:CDS 40.0%
GAAAACGATGAGGAGGATTG+TGG - Chr1:78676937-78676956 None:intergenic 45.0%
GGGCCCCTTACAAAAATGTA+TGG - Chr1:78677912-78677931 None:intergenic 45.0%
GGTCCTTCACAATTTCCTTG+TGG - Chr1:78678036-78678055 None:intergenic 45.0%
TTTCTGTACTTCTCGCGAGA+TGG + Chr1:78677020-78677039 MsG0180004480.01.T01:CDS 45.0%
! CTTTTGTCGGGGAGTGAATT+GGG - Chr1:78677870-78677889 None:intergenic 45.0%
! GCTTGTTGCTACTCATGTTG+GGG + Chr1:78677118-78677137 MsG0180004480.01.T01:CDS 45.0%
! GTTGTTGTTGTGGGTTTGCA+TGG + Chr1:78677170-78677189 MsG0180004480.01.T01:CDS 45.0%
! TCGTTTTCCTCAGCCTTCTT+TGG + Chr1:78676949-78676968 MsG0180004480.01.T01:CDS 45.0%
! TCTTTTGTCGGGGAGTGAAT+TGG - Chr1:78677871-78677890 None:intergenic 45.0%
! TGGGAGTTGTGAGTGTTGTT+GGG + Chr1:78677096-78677115 MsG0180004480.01.T01:CDS 45.0%
! TTGGGAGTTGTGAGTGTTGT+TGG + Chr1:78677095-78677114 MsG0180004480.01.T01:CDS 45.0%
!! AGTGGGTTGCTTTCTGTTGT+TGG + Chr1:78677233-78677252 MsG0180004480.01.T01:intron 45.0%
!! GGCTTGTTGCTACTCATGTT+GGG + Chr1:78677117-78677136 MsG0180004480.01.T01:CDS 45.0%
AACGATGAGGAGGATTGTGG+TGG - Chr1:78676934-78676953 None:intergenic 50.0%
AGGTTAGGTTTCGACGGAGA+CGG - Chr1:78676893-78676912 None:intergenic 50.0%
GAAGGCTGAGGAAAACGATG+AGG - Chr1:78676947-78676966 None:intergenic 50.0%
GGGCCACAAGGAAATTGTGA+AGG + Chr1:78678030-78678049 MsG0180004480.01.T01:CDS 50.0%
TGGAAACTGGGTGCCAAAGA+AGG - Chr1:78676965-78676984 None:intergenic 50.0%
! GGGTTGCTTTCTGTTGTTGG+AGG + Chr1:78677236-78677255 MsG0180004480.01.T01:intron 50.0%
!! GGGCTTGTTGCTACTCATGT+TGG + Chr1:78677116-78677135 MsG0180004480.01.T01:CDS 50.0%
CAGGACTGAATTGGGCCACA+AGG + Chr1:78678018-78678037 MsG0180004480.01.T01:intron 55.0%
GAAAGAACCACGCGACGAGA+AGG - Chr1:78677004-78677023 None:intergenic 55.0%
GGCTGAGGAAAACGATGAGG+AGG - Chr1:78676944-78676963 None:intergenic 55.0%
GGGACCCTGTACCAGATTTG+AGG - Chr1:78678198-78678217 None:intergenic 55.0%
TCTTGATCCTTCTCGTCGCG+TGG + Chr1:78676994-78677013 MsG0180004480.01.T01:CDS 55.0%
TGGTCACAGCAGCGGTGAAT+TGG + Chr1:78678324-78678343 MsG0180004480.01.T01:three_prime_UTR 55.0%
!! AGCTGAGTTGGTCACAGCAG+CGG + Chr1:78678316-78678335 MsG0180004480.01.T01:three_prime_UTR 55.0%
CTGGGTGCCAAAGAAGGCTG+AGG - Chr1:78676959-78676978 None:intergenic 60.0%
GGGGAGTGAATTGGGCCGCA+AGG - Chr1:78677862-78677881 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 78676885 78678619 78676885 ID=MsG0180004480.01;Name=MsG0180004480.01
Chr1 mRNA 78676885 78678619 78676885 ID=MsG0180004480.01.T01;Parent=MsG0180004480.01;Name=MsG0180004480.01.T01;_AED=0.35;_eAED=0.38;_QI=0|0|0.33|1|1|1|3|311|163
Chr1 exon 78676885 78677237 78676885 ID=MsG0180004480.01.T01:exon:45430;Parent=MsG0180004480.01.T01
Chr1 exon 78678021 78678062 78678021 ID=MsG0180004480.01.T01:exon:45431;Parent=MsG0180004480.01.T01
Chr1 exon 78678212 78678619 78678212 ID=MsG0180004480.01.T01:exon:45432;Parent=MsG0180004480.01.T01
Chr1 CDS 78676885 78677237 78676885 ID=MsG0180004480.01.T01:cds;Parent=MsG0180004480.01.T01
Chr1 CDS 78678021 78678062 78678021 ID=MsG0180004480.01.T01:cds;Parent=MsG0180004480.01.T01
Chr1 CDS 78678212 78678308 78678212 ID=MsG0180004480.01.T01:cds;Parent=MsG0180004480.01.T01
Chr1 three_prime_UTR 78678309 78678619 78678309 ID=MsG0180004480.01.T01:three_prime_utr;Parent=MsG0180004480.01.T01
Gene Sequence

>MsG0180004480.01.T01

ATGCTCCGTCTCCGTCGAAACCTAACCTACTTTCAATTCAACTACACCACCACAATCCTCCTCATCGTTTTCCTCAGCCTTCTTTGGCACCCAGTTTCCATGATCGTTTTCTTGATCCTTCTCGTCGCGTGGTTCTTTCTGTACTTCTCGCGAGATGGTCCTCTTATTGTTTTTAATCGAACGTTGGATGATCGAATTGTGATATGTGGTTTGGGAGTTGTGAGTGTTGTTGGGCTTGTTGCTACTCATGTTGGGGTTAATGTTTTGGTGGCTTTGATTGTTGGTGTTGTTGTTGTGGGTTTGCATGGTTCTTTTAGGGTTATTGAGGATTTGTATGTTGATGAGGAAAGTGGGACTGAATTGGGCCACAAGGAAATTGTGAAGGACCAAAATGGGGTCCCTTGCACGTATACACTCGAATTTGATGAAGAAAGTGTTCAGTTTTTTGCTTTGCATTGTCAAATTGATGATTTGGTTAAGAAGGGAAAGTAG
Protein sequence

>MsG0180004480.01.T01

MLRLRRNLTYFQFNYTTTILLIVFLSLLWHPVSMIVFLILLVAWFFLYFSRDGPLIVFNRTLDDRIVICGLGVVSVVGLVATHVGVNVLVALIVGVVVVGLHGSFRVIEDLYVDEESGTELGHKEIVKDQNGVPCTYTLEFDEESVQFFALHCQIDDLVKKGK*