AlfalfaGEDB | MsG0280007423.01

M. sativa cultivar ZhongmuNo.1 / MsG0280007423.01

KEGG: -
GO: -
PFAM: PF04755

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007423.01.T01	XP_003594155.1	90.152	132	13	0	1	132	1	132	1.15E-77	243

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007423.01.T01	Q9ZWQ8	48.299	147	52	8	1	132	1	138	1.90E-25	101

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048273.01	MsG0280007423.01	0.811319	7.428203e-51	4.583519e-48
MsG0080048797.01	MsG0280007423.01	-0.807335	5.316558e-50	2.953324e-47
MsG0080048887.01	MsG0280007423.01	0.802200	6.281516e-49	3.058217e-46
MsG0080049038.01	MsG0280007423.01	0.806595	7.620784e-50	4.152864e-47
MsG0080049129.01	MsG0280007423.01	0.841989	3.400956e-58	5.083961e-55
MsG0080049130.01	MsG0280007423.01	0.807176	5.745427e-50	3.178344e-47
MsG0180000367.01	MsG0280007423.01	-0.804094	2.547046e-49	1.301755e-46
MsG0180000412.01	MsG0280007423.01	0.808311	3.296111e-50	1.878394e-47
MsG0180001084.01	MsG0280007423.01	-0.811531	6.683642e-51	4.147439e-48
MsG0180001719.01	MsG0280007423.01	-0.805303	1.424512e-49	7.510331e-47
MsG0180003196.01	MsG0280007423.01	0.823700	1.202550e-53	1.043323e-50
MsG0180003316.01	MsG0280007423.01	0.810153	1.327781e-50	7.944044e-48
MsG0180003352.01	MsG0280007423.01	0.818137	2.293074e-52	1.702268e-49
MsG0180003484.01	MsG0280007423.01	-0.816321	5.872691e-52	4.148280e-49
MsG0180003617.01	MsG0280007423.01	0.859583	3.740787e-63	9.928051e-60
MsG0180003905.01	MsG0280007423.01	-0.827231	1.753912e-54	1.683042e-51
MsG0180004480.01	MsG0280007423.01	-0.809275	2.050412e-50	1.198652e-47
MsG0180004662.01	MsG0280007423.01	0.829106	6.198464e-55	6.282088e-52
MsG0180004787.01	MsG0280007423.01	0.809545	1.794751e-50	1.056765e-47
MsG0180004792.01	MsG0280007423.01	0.819656	1.035803e-52	8.019501e-50
MsG0180005035.01	MsG0280007423.01	0.824150	9.435164e-54	8.288987e-51
MsG0180005184.01	MsG0280007423.01	0.820037	8.473146e-53	6.630764e-50
MsG0180005338.01	MsG0280007423.01	0.827032	1.956926e-54	1.866896e-51
MsG0180005545.01	MsG0280007423.01	0.873346	1.579537e-67	6.832131e-64
MsG0180005555.01	MsG0280007423.01	0.882871	7.240787e-71	4.485876e-67
MsG0180005556.01	MsG0280007423.01	0.893674	5.042660e-75	4.852903e-71
MsG0180005557.01	MsG0280007423.01	0.871020	9.391625e-67	3.730614e-63
MsG0180005558.01	MsG0280007423.01	0.896920	2.320878e-76	2.563189e-72
MsG0180005561.01	MsG0280007423.01	0.810413	1.167248e-50	7.031069e-48
MsG0180005672.01	MsG0280007423.01	0.818074	2.369664e-52	1.755996e-49
MsG0180005741.01	MsG0280007423.01	-0.840412	8.834040e-58	1.257382e-54
MsG0180005767.01	MsG0280007423.01	0.818223	2.193157e-52	1.631856e-49
MsG0180005898.01	MsG0280007423.01	0.875930	2.089815e-68	9.942430e-65
MsG0180006010.01	MsG0280007423.01	-0.802212	6.243987e-49	3.040995e-46
MsG0180006183.01	MsG0280007423.01	-0.839478	1.547228e-57	2.139320e-54
MsG0180006253.01	MsG0280007423.01	-0.823442	1.382291e-53	1.190274e-50
MsG0280006319.01	MsG0280007423.01	0.867840	1.017014e-65	3.601312e-62
MsG0280006402.01	MsG0280007423.01	0.839399	1.621838e-57	2.237190e-54
MsG0280006533.01	MsG0280007423.01	0.815605	8.484319e-52	5.876824e-49
MsG0280007423.01	MsG0280007511.01	0.802961	4.375318e-49	2.171974e-46
MsG0280007423.01	MsG0280007653.01	0.802370	5.794598e-49	2.833687e-46
MsG0280007423.01	MsG0280007689.01	-0.828087	1.092583e-54	1.074970e-51
MsG0280007423.01	MsG0280007874.01	-0.818180	2.242638e-52	1.666776e-49
MsG0280007423.01	MsG0280009287.01	0.810039	1.405467e-50	8.384058e-48
MsG0280007423.01	MsG0280009542.01	0.812843	3.457046e-51	2.221482e-48
MsG0280007423.01	MsG0280009853.01	0.820956	5.215771e-53	4.187179e-50
MsG0280007423.01	MsG0280009863.01	0.837228	5.883619e-57	7.592923e-54
MsG0280007423.01	MsG0280010496.01	0.812354	4.423557e-51	2.806315e-48
MsG0280007423.01	MsG0280010617.01	-0.832778	7.786209e-56	8.791450e-53
MsG0280007423.01	MsG0280010854.01	0.826315	2.902744e-54	2.712720e-51
MsG0280007423.01	MsG0280011218.01	0.812416	4.285653e-51	2.723474e-48
MsG0280007423.01	MsG0280011271.01	-0.822870	1.879853e-53	1.592888e-50
MsG0280007423.01	MsG0280011362.01	0.822980	1.772165e-53	1.506325e-50
MsG0280007423.01	MsG0380011632.01	0.806148	9.467636e-50	5.100975e-47
MsG0280007423.01	MsG0380012782.01	0.804068	2.580012e-49	1.317726e-46
MsG0280007423.01	MsG0380014231.01	0.824453	8.005726e-54	7.093726e-51
MsG0280007423.01	MsG0380014466.01	0.833409	5.422652e-56	6.239505e-53
MsG0280007423.01	MsG0380014646.01	0.832716	8.064390e-56	9.089166e-53
MsG0280007423.01	MsG0380015129.01	0.818435	1.962771e-52	1.469243e-49
MsG0280007423.01	MsG0380015393.01	-0.852649	4.020250e-61	8.457557e-58
MsG0280007423.01	MsG0380015456.01	0.803529	3.338209e-49	1.681536e-46
MsG0280007423.01	MsG0380015496.01	0.834024	3.807097e-56	4.462053e-53
MsG0280007423.01	MsG0380015513.01	-0.808896	2.472107e-50	1.430498e-47
MsG0280007423.01	MsG0380015557.01	-0.803695	3.082884e-49	1.559509e-46
MsG0280007423.01	MsG0380015656.01	-0.828291	9.756762e-55	9.655938e-52
MsG0280007423.01	MsG0380015744.01	0.830477	2.873387e-55	3.030587e-52
MsG0280007423.01	MsG0380015828.01	0.831389	1.716215e-55	1.859730e-52
MsG0280007423.01	MsG0380016066.01	0.886655	2.830728e-72	2.039993e-68
MsG0280007423.01	MsG0380016151.01	0.809347	1.979148e-50	1.159246e-47
MsG0280007423.01	MsG0380016250.01	-0.837245	5.824074e-57	7.519892e-54
MsG0280007423.01	MsG0380016456.01	0.822154	2.757088e-53	2.288965e-50
MsG0280007423.01	MsG0380016542.01	0.803853	2.858428e-49	1.451891e-46
MsG0280007423.01	MsG0380016819.01	-0.809524	1.813466e-50	1.067173e-47
MsG0280007423.01	MsG0380016861.01	0.806405	8.358303e-50	4.532742e-47
MsG0280007423.01	MsG0380016936.01	0.852869	3.477820e-61	7.370848e-58
MsG0280007423.01	MsG0380016997.01	0.854763	9.909563e-62	2.236971e-58
MsG0280007423.01	MsG0380017353.01	0.808592	2.871989e-50	1.648684e-47
MsG0280007423.01	MsG0380017380.01	-0.801173	1.020158e-48	4.839479e-46
MsG0280007423.01	MsG0380017416.01	-0.816743	4.725547e-52	3.376446e-49
MsG0280007423.01	MsG0380017532.01	0.808048	3.749666e-50	2.122042e-47
MsG0280007423.01	MsG0380017666.01	-0.874913	4.655137e-68	2.133259e-64
MsG0280007423.01	MsG0380017918.01	0.888393	6.142964e-73	4.750058e-69
MsG0280007423.01	MsG0380018035.01	0.832152	1.112722e-55	1.233131e-52
MsG0280007423.01	MsG0480018228.01	-0.822331	2.508903e-53	2.093581e-50
MsG0280007423.01	MsG0480018629.01	0.844587	6.894249e-59	1.118250e-55
MsG0280007423.01	MsG0480019573.01	0.883435	4.499189e-71	2.851563e-67
MsG0280007423.01	MsG0480020027.01	0.810003	1.430830e-50	8.527389e-48
MsG0280007423.01	MsG0480020350.01	0.805417	1.348692e-49	7.131357e-47
MsG0280007423.01	MsG0480020704.01	0.812971	3.241542e-51	2.090079e-48
MsG0280007423.01	MsG0480020797.01	-0.816998	4.140672e-52	2.979567e-49
MsG0280007423.01	MsG0480020937.01	-0.833394	5.468629e-56	6.289640e-53
MsG0280007423.01	MsG0480020938.01	0.845351	4.286733e-59	7.124024e-56
MsG0280007423.01	MsG0480021151.01	0.820352	7.176535e-53	5.664954e-50
MsG0280007423.01	MsG0480021175.01	-0.823413	1.404013e-53	1.207914e-50
MsG0280007423.01	MsG0480021226.01	-0.818168	2.255920e-52	1.676090e-49
MsG0280007423.01	MsG0480021312.01	0.803379	3.586154e-49	1.799313e-46
MsG0280007423.01	MsG0480021436.01	-0.802420	5.657700e-49	2.770320e-46
MsG0280007423.01	MsG0480021691.01	0.800948	1.134042e-48	5.349457e-46
MsG0280007423.01	MsG0480021773.01	-0.816867	4.430987e-52	3.176912e-49
MsG0280007423.01	MsG0480022002.01	0.800035	1.740912e-48	8.023493e-46
MsG0280007423.01	MsG0480022242.01	0.829011	6.533955e-55	6.603440e-52
MsG0280007423.01	MsG0480022244.01	0.845555	3.774526e-59	6.313715e-56
MsG0280007423.01	MsG0480022378.01	-0.820234	7.639276e-53	6.010290e-50
MsG0280007423.01	MsG0480022664.01	0.813556	2.411492e-51	1.579853e-48
MsG0280007423.01	MsG0480022805.01	0.848287	6.747401e-60	1.232281e-56
MsG0280007423.01	MsG0480023104.01	0.805190	1.504725e-49	7.910046e-47
MsG0280007423.01	MsG0480023125.01	-0.861824	7.821817e-64	2.241840e-60
MsG0280007423.01	MsG0480023173.01	0.817162	3.805274e-52	2.750327e-49
MsG0280007423.01	MsG0480023375.01	0.848893	4.584824e-60	8.539072e-57
MsG0280007423.01	MsG0480023386.01	0.839125	1.910877e-57	2.613375e-54
MsG0280007423.01	MsG0480023395.01	0.827708	1.347908e-54	1.311471e-51
MsG0280007423.01	MsG0480023414.01	-0.811172	7.995604e-51	4.914609e-48
MsG0280007423.01	MsG0480023466.01	0.845174	4.786458e-59	7.909051e-56
MsG0280007423.01	MsG0480023842.01	-0.826066	3.325349e-54	3.085662e-51
MsG0280007423.01	MsG0480024019.01	-0.831212	1.896752e-55	2.044494e-52
MsG0280007423.01	MsG0580024201.01	0.819401	1.183908e-52	9.100934e-50
MsG0280007423.01	MsG0580024276.01	-0.811668	6.240014e-51	3.885837e-48
MsG0280007423.01	MsG0580024386.01	0.841176	5.570238e-58	8.117664e-55
MsG0280007423.01	MsG0580024471.01	0.838790	2.332655e-57	3.158077e-54
MsG0280007423.01	MsG0580024538.01	0.808568	2.905981e-50	1.667164e-47
MsG0280007423.01	MsG0580024567.01	0.857843	1.237784e-62	3.096873e-59
MsG0280007423.01	MsG0580024763.01	0.868221	7.673444e-66	2.754260e-62
MsG0280007423.01	MsG0580024764.01	0.884865	1.330983e-71	8.928036e-68
MsG0280007423.01	MsG0580024982.01	0.800210	1.603903e-48	7.424966e-46
MsG0280007423.01	MsG0580025413.01	0.816023	6.845426e-52	4.795987e-49
MsG0280007423.01	MsG0580025633.01	-0.802054	6.729851e-49	3.264547e-46
MsG0280007423.01	MsG0580027098.01	0.815629	8.382437e-52	5.810024e-49
MsG0280007423.01	MsG0580027099.01	0.801288	9.662986e-49	4.597386e-46
MsG0280007423.01	MsG0580027254.01	0.830894	2.270873e-55	2.424978e-52
MsG0280007423.01	MsG0580027803.01	0.815916	7.235087e-52	5.053774e-49
MsG0280007423.01	MsG0580027899.01	0.815883	7.359106e-52	5.135712e-49
MsG0280007423.01	MsG0580028159.01	0.805458	1.322064e-49	6.998119e-47
MsG0280007423.01	MsG0580028495.01	0.819378	1.198708e-52	9.208120e-50
MsG0280007423.01	MsG0580030063.01	0.827084	1.901658e-54	1.817059e-51
MsG0280007423.01	MsG0580030141.01	-0.832564	8.796885e-56	9.869663e-53
MsG0280007423.01	MsG0680031204.01	0.814774	1.297942e-51	8.788203e-49
MsG0280007423.01	MsG0680031356.01	-0.844026	9.753924e-59	1.554588e-55
MsG0280007423.01	MsG0680034730.01	0.807149	5.818811e-50	3.216710e-47
MsG0280007423.01	MsG0680035612.01	0.820977	5.157837e-53	4.143111e-50
MsG0280007423.01	MsG0680035664.01	0.830407	2.989154e-55	3.146425e-52
MsG0280007423.01	MsG0680035665.01	0.849108	3.994715e-60	7.493122e-57
MsG0280007423.01	MsG0780036008.01	0.810366	1.194596e-50	7.187131e-48
MsG0280007423.01	MsG0780036060.01	-0.834131	3.579141e-56	4.208150e-53
MsG0280007423.01	MsG0780037052.01	-0.808032	3.779254e-50	2.137886e-47
MsG0280007423.01	MsG0780037915.01	0.822214	2.670728e-53	2.221062e-50
MsG0280007423.01	MsG0780037944.01	0.845777	3.286485e-59	5.537788e-56
MsG0280007423.01	MsG0780037946.01	0.858293	9.096792e-63	2.310565e-59
MsG0280007423.01	MsG0780039536.01	-0.854036	1.607492e-61	3.543540e-58
MsG0280007423.01	MsG0780039805.01	0.829215	5.830579e-55	5.929013e-52
MsG0280007423.01	MsG0780040155.01	0.806417	8.311084e-50	4.508509e-47
MsG0280007423.01	MsG0780040350.01	0.813551	2.416934e-51	1.583259e-48
MsG0280007423.01	MsG0780040459.01	-0.838783	2.342005e-57	3.170002e-54
MsG0280007423.01	MsG0780040554.01	-0.859632	3.615559e-63	9.612499e-60
MsG0280007423.01	MsG0780040670.01	-0.814317	1.638486e-51	1.095843e-48
MsG0280007423.01	MsG0780040914.01	-0.808784	2.612210e-50	1.507092e-47
MsG0280007423.01	MsG0780041385.01	0.821535	3.834671e-53	3.128115e-50
MsG0280007423.01	MsG0780041668.01	0.805432	1.339053e-49	7.083066e-47
MsG0280007423.01	MsG0780041823.01	-0.840567	8.044411e-58	1.150445e-54
MsG0280007423.01	MsG0880041908.01	0.808647	2.795255e-50	1.606910e-47
MsG0280007423.01	MsG0880041909.01	0.812197	4.784692e-51	3.022617e-48
MsG0280007423.01	MsG0880042690.01	0.817519	3.162657e-52	2.308345e-49
MsG0280007423.01	MsG0880043238.01	0.830008	3.739509e-55	3.891151e-52
MsG0280007423.01	MsG0880043515.01	0.821769	3.385116e-53	2.779852e-50
MsG0280007423.01	MsG0880043870.01	0.801799	7.591769e-49	3.658824e-46
MsG0280007423.01	MsG0880044105.01	0.843378	1.454095e-58	2.270956e-55
MsG0280007423.01	MsG0880044317.01	0.860715	1.702008e-63	4.697320e-60
MsG0280007423.01	MsG0880044318.01	0.836562	8.703959e-57	1.100875e-53
MsG0280007423.01	MsG0880044411.01	0.853121	2.946068e-61	6.297634e-58
MsG0280007423.01	MsG0880044436.01	0.850528	1.602402e-60	3.147885e-57
MsG0280007423.01	MsG0880044453.01	0.842693	2.213274e-58	3.382432e-55
MsG0280007423.01	MsG0880044545.01	0.827185	1.798937e-54	1.723972e-51
MsG0280007423.01	MsG0880044548.01	0.824658	7.162525e-54	6.385483e-51
MsG0280007423.01	MsG0880044834.01	0.884729	1.494537e-71	9.972981e-68
MsG0280007423.01	MsG0880045703.01	0.809440	1.889936e-50	1.109711e-47
MsG0280007423.01	MsG0880045725.01	-0.813042	3.126651e-51	2.019952e-48
MsG0280007423.01	MsG0880046281.01	0.815124	1.085448e-51	7.419184e-49
MsG0280007423.01	MsG0880046324.01	0.869755	2.441361e-66	9.264226e-63
MsG0280007423.01	MsG0880046408.01	0.829573	4.773869e-55	4.905014e-52
MsG0280007423.01	MsG0880046838.01	0.818110	2.325026e-52	1.724679e-49
MsG0280007423.01	MsG0880047207.01	0.838868	2.227218e-57	3.022457e-54
MsG0280007423.01	MsG0880047265.01	0.810337	1.211914e-50	7.285528e-48
MsG0280007423.01	MsG0880047414.01	-0.816720	4.781187e-52	3.414110e-49
MsG0280007423.01	MsG0880047450.01	-0.831931	1.262104e-55	1.389893e-52
MsG0280007423.01	MsG0880047664.01	-0.812438	4.240403e-51	2.696299e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007423.01.T01	MTR_2g025050	90.152	132	13	0	1	132	1	132	1.39e-81	243
MsG0280007423.01.T01	MTR_2g025040	76.296	135	25	2	1	132	1	131	2.76e-63	196
MsG0280007423.01.T01	MTR_1g099880	74.026	77	16	1	56	132	3	75	3.60e-30	108
MsG0280007423.01.T01	MTR_5g029590	43.902	82	35	2	62	132	91	172	1.96e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280007423.01.T01	AT4G04020	54.217	83	28	3	57	132	54	133	1.93e-18	79.7
MsG0280007423.01.T01	AT4G22240	51.042	96	35	4	41	132	38	125	2.38e-17	76.6
MsG0280007423.01.T01	AT2G35490	50.704	71	33	2	62	132	124	192	5.90e-13	64.7

Find 41 sgRNAs with CRISPR-Local

Find 43 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGAGGCGGGCGGTGTATGTT+CGG	0.309347	2:-15219305	MsG0280007423.01.T01:CDS
GTGGAGTTGAGAGAGGTTAC+TGG	0.345185	2:+15219408	None:intergenic
TTCTGCTGGCGTCGCGGTTG+CGG	0.388728	2:-15219247	MsG0280007423.01.T01:CDS
GAGGCGGGCGGTGTATGTTC+GGG	0.431419	2:-15219304	MsG0280007423.01.T01:CDS
TGGGGTCCAGAGCCTTCTGC+TGG	0.436696	2:-15219261	MsG0280007423.01.T01:CDS
TTGGTTGAGGTTTGAGAGAG+AGG	0.455247	2:+15219452	None:intergenic
GGGTGTTTGTGTGGAGAAGT+TGG	0.455512	2:+15219433	None:intergenic
TTGTGTGGAGAAGTTGGTTG+AGG	0.470556	2:+15219439	None:intergenic
TGAAGGTGTGGAGTTGAGAG+AGG	0.491712	2:+15219401	None:intergenic
AGAAAGTGACGGATAGTGAG+AGG	0.496240	2:-15219209	MsG0280007423.01.T01:CDS
GCGACGCCAGCAGAAGGCTC+TGG	0.497720	2:+15219255	None:intergenic
AAACCATCGGCCAACACAAT+CGG	0.499127	2:+15219327	None:intergenic
AAACCGAACGTGATGGTCGA+TGG	0.504270	2:+15219372	None:intergenic
GTTGAGAGAGGTTACTGGAA+GGG	0.505605	2:+15219413	None:intergenic
TGCTGGCGTCGCGGTTGCGG+AGG	0.508923	2:-15219244	MsG0280007423.01.T01:CDS
TCTCCATCGACCATCACGTT+CGG	0.514451	2:-15219375	MsG0280007423.01.T01:CDS
TTGTGTTGGCCGATGGTTTG+AGG	0.521688	2:-15219323	MsG0280007423.01.T01:CDS
AGACCGATTGTGTTGGCCGA+TGG	0.523427	2:-15219330	MsG0280007423.01.T01:CDS
GTTGGCCGATGGTTTGAGGC+GGG	0.530141	2:-15219319	MsG0280007423.01.T01:CDS
TAATACAAATGATGATGAGT+GGG	0.532459	2:-15219280	MsG0280007423.01.T01:CDS
CACCGCCCGCCTCAAACCAT+CGG	0.549599	2:+15219314	None:intergenic
GGCATCAGTAGAAGCGGTGT+GGG	0.550175	2:+15219069	None:intergenic
TGAGAGGGAGAAGCTGAAGA+AGG	0.553126	2:-15219193	MsG0280007423.01.T01:CDS
GGAGAAGCTGAAGAAGGCGT+TGG	0.553210	2:-15219187	MsG0280007423.01.T01:CDS
GCAACCGCGACGCCAGCAGA+AGG	0.556346	2:+15219249	None:intergenic
AAGCTGAAGAAGGCGTTGGT+TGG	0.574482	2:-15219183	MsG0280007423.01.T01:CDS
TTACTGGAAGGGTGTTTGTG+TGG	0.583482	2:+15219424	None:intergenic
AGTTGAGAGAGGTTACTGGA+AGG	0.592004	2:+15219412	None:intergenic
CGATGGAGAAGTTGAAGGTG+TGG	0.601344	2:+15219389	None:intergenic
GCTCAGAAAACCGAACGTGA+TGG	0.601660	2:+15219365	None:intergenic
GGCCGATGGTTTGAGGCGGG+CGG	0.626348	2:-15219316	MsG0280007423.01.T01:CDS
CTAATACAAATGATGATGAG+TGG	0.629749	2:-15219281	MsG0280007423.01.T01:CDS
ATGGTCGATGGAGAAGTTGA+AGG	0.631836	2:+15219384	None:intergenic
GAAAGTGACGGATAGTGAGA+GGG	0.635117	2:-15219208	MsG0280007423.01.T01:CDS
TGTCAGAAGACCGATTGTGT+TGG	0.635862	2:-15219337	MsG0280007423.01.T01:CDS
ACTCAAGGCATCAGTAGAAG+CGG	0.637283	2:+15219063	None:intergenic
AGGCATCAGTAGAAGCGGTG+TGG	0.641827	2:+15219068	None:intergenic
AGAGCCTTCTGCTGGCGTCG+CGG	0.645840	2:-15219253	MsG0280007423.01.T01:CDS
GAAAGAGACTGAGAAAGTGA+CGG	0.653391	2:-15219220	MsG0280007423.01.T01:CDS
TGTTGGCCGATGGTTTGAGG+CGG	0.676008	2:-15219320	MsG0280007423.01.T01:CDS
AATACAAATGATGATGAGTG+GGG	0.724716	2:-15219279	MsG0280007423.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TAATACAAATGATGATGAGT+GGG	-	Chr2:15219241-15219260	MsG0280007423.01.T01:CDS	25.0%
!	AATACAAATGATGATGAGTG+GGG	-	Chr2:15219242-15219261	MsG0280007423.01.T01:CDS	30.0%
!	CTAATACAAATGATGATGAG+TGG	-	Chr2:15219240-15219259	MsG0280007423.01.T01:CDS	30.0%
	GAAAGAGACTGAGAAAGTGA+CGG	-	Chr2:15219301-15219320	MsG0280007423.01.T01:CDS	40.0%
!!!	CGTTGGTTGGTTCGTTTTAT+GGG	-	Chr2:15219351-15219370	MsG0280007423.01.T01:CDS	40.0%
	AAACCATCGGCCAACACAAT+CGG	+	Chr2:15219197-15219216	None:intergenic	45.0%
	AGTTGAGAGAGGTTACTGGA+AGG	+	Chr2:15219112-15219131	None:intergenic	45.0%
	ATGGTCGATGGAGAAGTTGA+AGG	+	Chr2:15219140-15219159	None:intergenic	45.0%
	GTTGAGAGAGGTTACTGGAA+GGG	+	Chr2:15219111-15219130	None:intergenic	45.0%
	TGTCAGAAGACCGATTGTGT+TGG	-	Chr2:15219184-15219203	MsG0280007423.01.T01:CDS	45.0%
	TTGGTTGAGGTTTGAGAGAG+AGG	+	Chr2:15219072-15219091	None:intergenic	45.0%
!	TCGTTTTATGGGACTGATCG+TGG	-	Chr2:15219362-15219381	MsG0280007423.01.T01:CDS	45.0%
!	TTGTGTGGAGAAGTTGGTTG+AGG	+	Chr2:15219085-15219104	None:intergenic	45.0%
!!	AGAAAGTGACGGATAGTGAG+AGG	-	Chr2:15219312-15219331	MsG0280007423.01.T01:CDS	45.0%
!!	GAAAGTGACGGATAGTGAGA+GGG	-	Chr2:15219313-15219332	MsG0280007423.01.T01:CDS	45.0%
!!	TTACTGGAAGGGTGTTTGTG+TGG	+	Chr2:15219100-15219119	None:intergenic	45.0%
!!!	GCGTTGGTTGGTTCGTTTTA+TGG	-	Chr2:15219350-15219369	MsG0280007423.01.T01:CDS	45.0%
	AAACCGAACGTGATGGTCGA+TGG	+	Chr2:15219152-15219171	None:intergenic	50.0%
	CGATGGAGAAGTTGAAGGTG+TGG	+	Chr2:15219135-15219154	None:intergenic	50.0%
	GCTCAGAAAACCGAACGTGA+TGG	+	Chr2:15219159-15219178	None:intergenic	50.0%
	GGGTGTTTGTGTGGAGAAGT+TGG	+	Chr2:15219091-15219110	None:intergenic	50.0%
	GTGGAGTTGAGAGAGGTTAC+TGG	+	Chr2:15219116-15219135	None:intergenic	50.0%
	TCTCCATCGACCATCACGTT+CGG	-	Chr2:15219146-15219165	MsG0280007423.01.T01:CDS	50.0%
	TGAGAGGGAGAAGCTGAAGA+AGG	-	Chr2:15219328-15219347	MsG0280007423.01.T01:CDS	50.0%
!	TGAAGGTGTGGAGTTGAGAG+AGG	+	Chr2:15219123-15219142	None:intergenic	50.0%
!	TTGTGTTGGCCGATGGTTTG+AGG	-	Chr2:15219198-15219217	MsG0280007423.01.T01:CDS	50.0%
!!	AAGCTGAAGAAGGCGTTGGT+TGG	-	Chr2:15219338-15219357	MsG0280007423.01.T01:CDS	50.0%
	AGGCATCAGTAGAAGCGGTG+TGG	+	Chr2:15219456-15219475	None:intergenic	55.0%
	GGCATCAGTAGAAGCGGTGT+GGG	+	Chr2:15219455-15219474	None:intergenic	55.0%
	TGTTGGCCGATGGTTTGAGG+CGG	-	Chr2:15219201-15219220	MsG0280007423.01.T01:CDS	55.0%
!	AGACCGATTGTGTTGGCCGA+TGG	-	Chr2:15219191-15219210	MsG0280007423.01.T01:CDS	55.0%
!	GGAGAAGCTGAAGAAGGCGT+TGG	-	Chr2:15219334-15219353	MsG0280007423.01.T01:CDS	55.0%
	TGAGGCGGGCGGTGTATGTT+CGG	-	Chr2:15219216-15219235	MsG0280007423.01.T01:CDS	60.0%
!	GTTGGCCGATGGTTTGAGGC+GGG	-	Chr2:15219202-15219221	MsG0280007423.01.T01:CDS	60.0%
	AGAGCCTTCTGCTGGCGTCG+CGG	-	Chr2:15219268-15219287	MsG0280007423.01.T01:CDS	65.0%
	CACCGCCCGCCTCAAACCAT+CGG	+	Chr2:15219210-15219229	None:intergenic	65.0%
	GAGGCGGGCGGTGTATGTTC+GGG	-	Chr2:15219217-15219236	MsG0280007423.01.T01:CDS	65.0%
	TGGGGTCCAGAGCCTTCTGC+TGG	-	Chr2:15219260-15219279	MsG0280007423.01.T01:CDS	65.0%
	TTCTGCTGGCGTCGCGGTTG+CGG	-	Chr2:15219274-15219293	MsG0280007423.01.T01:CDS	65.0%
	GCAACCGCGACGCCAGCAGA+AGG	+	Chr2:15219275-15219294	None:intergenic	70.0%
	GCGACGCCAGCAGAAGGCTC+TGG	+	Chr2:15219269-15219288	None:intergenic	70.0%
!	GGCCGATGGTTTGAGGCGGG+CGG	-	Chr2:15219205-15219224	MsG0280007423.01.T01:CDS	70.0%
	TGCTGGCGTCGCGGTTGCGG+AGG	-	Chr2:15219277-15219296	MsG0280007423.01.T01:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	15219065	15219478	15219065	ID=MsG0280007423.01;Name=MsG0280007423.01
Chr2	mRNA	15219065	15219478	15219065	ID=MsG0280007423.01.T01;Parent=MsG0280007423.01;Name=MsG0280007423.01.T01;_AED=0.42;_eAED=0.42;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|137
Chr2	exon	15219065	15219478	15219065	ID=MsG0280007423.01.T01:exon:1020;Parent=MsG0280007423.01.T01
Chr2	CDS	15219065	15219478	15219065	ID=MsG0280007423.01.T01:cds;Parent=MsG0280007423.01.T01

Gene Sequence

>MsG0280007423.01.T01

ATGGCCTCTCTCTCAAACCTCAACCAACTTCTCCACACAAACACCCTTCCAGTAACCTCTCTCAACTCCACACCTTCAACTTCTCCATCGACCATCACGTTCGGTTTTCTGAGCAAACATGTCAGAAGACCGATTGTGTTGGCCGATGGTTTGAGGCGGGCGGTGTATGTTCGGGCTAATACAAATGATGATGAGTGGGGTCCAGAGCCTTCTGCTGGCGTCGCGGTTGCGGAGGTGAAAGAGACTGAGAAAGTGACGGATAGTGAGAGGGAGAAGCTGAAGAAGGCGTTGGTTGGTTCGTTTTATGGGACTGATCGTGGATTGAAAGCGACGAGTGAAACGAGAGCTGAGATTGTTGAGCTGATTACTCAGCTTGAAGCTAAGAATCCCACACCGCTTCTACTGATGCCTTGA

Protein sequence

>MsG0280007423.01.T01

MASLSNLNQLLHTNTLPVTSLNSTPSTSPSTITFGFLSKHVRRPIVLADGLRRAVYVRANTNDDEWGPEPSAGVAVAEVKETEKVTDSEREKLKKALVGSFYGTDRGLKATSETRAEIVELITQLEAKNPTPLLLMP*