AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004671.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004671.01.T01 MTR_1g084190 99.412 170 1 0 16 185 240 409 2.20e-124 359
MsG0180004671.01.T01 MTR_8g101730 34.722 144 85 4 36 170 234 377 6.67e-18 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004671.01.T01 AT1G09300 70.588 170 48 1 16 185 239 406 1.49e-87 266
MsG0180004671.01.T01 AT1G09300 70.588 170 48 1 16 185 208 375 1.58e-87 265
MsG0180004671.01.T01 AT4G29490 30.220 182 113 5 16 186 216 394 1.60e-19 85.9

Find 51 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAAGTTGGGTTCAGCTTA+TGG 0.298215 1:-81059975 None:intergenic
TGTTATATGCAGATTTGTTT+AGG 0.322744 1:+81057509 None:intergenic
ATTGATCCAGGTCACTATCT+AGG 0.354401 1:+81060122 MsG0180004671.01.T01:intron
GAAGTGTTATACATTATTCT+AGG 0.368162 1:+81057934 MsG0180004671.01.T01:CDS
TATTGAACTGTTGTTCAGTC+AGG 0.372654 1:-81060215 None:intergenic
TTCAATCCCGTGGTTGGTGG+TGG 0.398757 1:+81057903 MsG0180004671.01.T01:CDS
CATGTTTGGCAGATTAAAGA+TGG 0.406377 1:+81058028 MsG0180004671.01.T01:intron
AAGCTGAACCCAACTTCTAT+AGG 0.407794 1:+81059979 MsG0180004671.01.T01:CDS
ATGAGAGGTGCGCAGCGAAT+GGG 0.410718 1:+81057672 MsG0180004671.01.T01:CDS
GTGGTTGGTGGTGGGCCTAA+TGG 0.419819 1:+81057912 MsG0180004671.01.T01:CDS
GTTGGAATATTGAAAGATGT+TGG 0.424223 1:+81059940 MsG0180004671.01.T01:CDS
GCAGCTAGCATACCTTCAAA+AGG 0.428825 1:-81057627 None:intergenic
TGGTAGCTTCTCTTCTGCCC+AGG 0.468113 1:+81058126 MsG0180004671.01.T01:CDS
CCGAATGGTTGTGTATTTGT+CGG 0.470570 1:-81059125 None:intergenic
TGTGTGGAACTTTGTAAGCC+TGG 0.488945 1:+81059093 MsG0180004671.01.T01:CDS
TTTGACTGTCCTCTGAAGCC+AGG 0.489111 1:+81060176 MsG0180004671.01.T01:CDS
ACCAGGCTACCTATAGAAGT+TGG 0.492131 1:-81059988 None:intergenic
AATGAGAGGTGCGCAGCGAA+TGG 0.501064 1:+81057671 MsG0180004671.01.T01:CDS
TAATGTATAACACTTCCATT+AGG 0.503380 1:-81057927 None:intergenic
TCAGCGATCTCACGCGTACC+TGG 0.508919 1:+81058095 MsG0180004671.01.T01:CDS
CAGAAAGGACTCAAGGAGGT+TGG 0.513664 1:+81059922 MsG0180004671.01.T01:CDS
AGATTCAATCCCGTGGTTGG+TGG 0.514269 1:+81057900 MsG0180004671.01.T01:intron
TGAAGGTATGCTAGCTGCAA+AGG 0.521850 1:+81057632 MsG0180004671.01.T01:CDS
GAAGCTACCACAAGGTGGCC+AGG 0.525969 1:-81058113 None:intergenic
ATTGAACTGTTGTTCAGTCA+GGG 0.529326 1:-81060214 None:intergenic
CCAGGCTACCTATAGAAGTT+GGG 0.533663 1:-81059987 None:intergenic
CTTACAACACCTGGCTTCAG+AGG 0.541034 1:-81060185 None:intergenic
CAGCTAGCATACCTTCAAAA+GGG 0.544862 1:-81057626 None:intergenic
TATATGCAGATTTGTTTAGG+AGG 0.557868 1:+81057512 None:intergenic
CCGACAAATACACAACCATT+CGG 0.567790 1:+81059125 MsG0180004671.01.T01:CDS
AGTTGGGTTCAGCTTATGGT+AGG 0.568189 1:-81059971 None:intergenic
GGGAAAGCACTTACAACACC+TGG 0.570813 1:-81060194 None:intergenic
ATTAGGCCCACCACCAACCA+CGG 0.575070 1:-81057910 None:intergenic
TCAATCCCGTGGTTGGTGGT+GGG 0.577700 1:+81057904 MsG0180004671.01.T01:CDS
TGAGAGGTGCGCAGCGAATG+GGG 0.579429 1:+81057673 MsG0180004671.01.T01:CDS
GACATTGGATGTGAGTTACA+TGG 0.582230 1:+81058067 MsG0180004671.01.T01:CDS
ATCAGATTCAATCCCGTGGT+TGG 0.587531 1:+81057897 MsG0180004671.01.T01:intron
TTAGGCCCACCACCAACCAC+GGG 0.589559 1:-81057909 None:intergenic
CAGGTTGAAATGCTGCAGAA+AGG 0.597743 1:+81059907 MsG0180004671.01.T01:intron
ACGCGTACCTGGCCACCTTG+TGG 0.599158 1:+81058106 MsG0180004671.01.T01:CDS
TCCAGGTCACTATCTAGGAA+TGG 0.601316 1:+81060127 MsG0180004671.01.T01:intron
AGAAACTAACAAGCATTGTG+TGG 0.607256 1:+81059077 MsG0180004671.01.T01:CDS
AATGCTGCAGAAAGGACTCA+AGG 0.627439 1:+81059915 MsG0180004671.01.T01:CDS
TTATTCTAGGAACGATCAGA+AGG 0.629437 1:+81057947 MsG0180004671.01.T01:CDS
CTGTATCAGATTCAATCCCG+TGG 0.633552 1:+81057893 MsG0180004671.01.T01:intron
ATTTGTCGGATACTAGCACC+AGG 0.642966 1:-81059111 None:intergenic
ACATTGGATGTGAGTTACAT+GGG 0.693361 1:+81058068 MsG0180004671.01.T01:CDS
GAATACGAATGCAAAATGAG+AGG 0.696219 1:+81057657 MsG0180004671.01.T01:CDS
GCAGAAGAGAAGCTACCACA+AGG 0.709712 1:-81058121 None:intergenic
GAAGAGAAGCTACCACAAGG+TGG 0.733869 1:-81058118 None:intergenic
GCTGCAGAAAGGACTCAAGG+AGG 0.745589 1:+81059918 MsG0180004671.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATATTGAATTTTAATGTA+AGG + Chr1:81059692-81059711 MsG0180004671.01.T01:intron 10.0%
!! AAATGGAATTAGATTAAAAA+TGG - Chr1:81058535-81058554 None:intergenic 15.0%
!! AATGGAATTAGATTAAAAAT+GGG - Chr1:81058534-81058553 None:intergenic 15.0%
!! ATCTGTAACAAAAAAAAATA+TGG - Chr1:81060043-81060062 None:intergenic 15.0%
!! CATACTACTAAAATAAAAAA+TGG - Chr1:81058552-81058571 None:intergenic 15.0%
!! CATTAATATAGAAAACTAAA+TGG + Chr1:81057811-81057830 MsG0180004671.01.T01:intron 15.0%
!! TCAAATATTTATAAGACATT+GGG - Chr1:81058905-81058924 None:intergenic 15.0%
!! TTCAAATATTTATAAGACAT+TGG - Chr1:81058906-81058925 None:intergenic 15.0%
!! TTGAAAAAATGATAAGAAAA+AGG - Chr1:81059156-81059175 None:intergenic 15.0%
!!! TAATTTTGCAAAACTAATTT+TGG - Chr1:81059580-81059599 None:intergenic 15.0%
!!! TATCTTTTATTTTTTACTCA+AGG - Chr1:81058606-81058625 None:intergenic 15.0%
!!! TATGAATATCATCTAAAATA+TGG + Chr1:81059459-81059478 MsG0180004671.01.T01:intron 15.0%
!!! TCTTATAAATATTTGAAACT+TGG + Chr1:81058909-81058928 MsG0180004671.01.T01:intron 15.0%
!!! TGACATTTGAAATAAAAATA+TGG + Chr1:81060078-81060097 MsG0180004671.01.T01:intron 15.0%
!! ATAAAAATATTAGAACAGCA+AGG - Chr1:81059668-81059687 None:intergenic 20.0%
!! ATGTCCAAAAATATTCATTT+GGG - Chr1:81058708-81058727 None:intergenic 20.0%
!! CAATTTATAAAGATGCAATA+AGG + Chr1:81059173-81059192 MsG0180004671.01.T01:intron 20.0%
!! TATGTCCAAAAATATTCATT+TGG - Chr1:81058709-81058728 None:intergenic 20.0%
!! TTTCTTATCTTTATCATGTT+TGG + Chr1:81058014-81058033 MsG0180004671.01.T01:intron 20.0%
!!! AAACATTTTCTCAAAGTAAA+CGG - Chr1:81058210-81058229 None:intergenic 20.0%
!!! ATGACTTTTATTTAAGGATA+AGG - Chr1:81059206-81059225 None:intergenic 20.0%
!!! ATTGAATTTTAATGTAAGGA+AGG + Chr1:81059696-81059715 MsG0180004671.01.T01:intron 20.0%
!!! TTTATTTTTTACTCAAGGTA+TGG - Chr1:81058601-81058620 None:intergenic 20.0%
! GTTATTAGAATAACTCATGA+AGG - Chr1:81059232-81059251 None:intergenic 25.0%
! TAATGTATAACACTTCCATT+AGG - Chr1:81057930-81057949 None:intergenic 25.0%
! TTAGGGGTTAAAATTAAGTT+TGG - Chr1:81059388-81059407 None:intergenic 25.0%
!! AACATTTTCTCAAAGTAAAC+GGG - Chr1:81058209-81058228 None:intergenic 25.0%
!! ATAGCCCAAATGAATATTTT+TGG + Chr1:81058701-81058720 MsG0180004671.01.T01:intron 25.0%
!! GAAGTGTTATACATTATTCT+AGG + Chr1:81057934-81057953 MsG0180004671.01.T01:CDS 25.0%
!! TCACGATTTTTCTATATTTC+AGG + Chr1:81059032-81059051 MsG0180004671.01.T01:intron 25.0%
!!! AACATTTTCTGGTTTTGAAT+AGG + Chr1:81057570-81057589 MsG0180004671.01.T01:intron 25.0%
!!! ATTGCATCGATTTTCATTTA+TGG + Chr1:81058449-81058468 MsG0180004671.01.T01:intron 25.0%
!!! GATGAATAAATTTTGAGTCA+AGG + Chr1:81059349-81059368 MsG0180004671.01.T01:intron 25.0%
!!! TTGATGATTTGAACATTTTC+TGG + Chr1:81057559-81057578 MsG0180004671.01.T01:intron 25.0%
ACCTAGATAGGATTTCTAAA+AGG - Chr1:81058168-81058187 None:intergenic 30.0%
AGAAATCCTATCTAGGTATT+TGG + Chr1:81058171-81058190 MsG0180004671.01.T01:intron 30.0%
ATATTCATGCGAAAAGAATC+TGG + Chr1:81058942-81058961 MsG0180004671.01.T01:intron 30.0%
ATCATCAAGTTCTTACCATT+TGG - Chr1:81057547-81057566 None:intergenic 30.0%
CATCAGTAAATAGTCTATCA+AGG - Chr1:81058353-81058372 None:intergenic 30.0%
GAAATCCTATCTAGGTATTT+GGG + Chr1:81058172-81058191 MsG0180004671.01.T01:intron 30.0%
GTTGGAATATTGAAAGATGT+TGG + Chr1:81059940-81059959 MsG0180004671.01.T01:CDS 30.0%
TAGGTATTTGGGAAATCTTA+CGG + Chr1:81058183-81058202 MsG0180004671.01.T01:intron 30.0%
! AGATTCTTTTCGCATGAATA+TGG - Chr1:81058943-81058962 None:intergenic 30.0%
! CATATGTATTGCACTTCTTT+TGG + Chr1:81058487-81058506 MsG0180004671.01.T01:intron 30.0%
! TTCAAAACATACCCTTTTGA+AGG + Chr1:81057615-81057634 MsG0180004671.01.T01:CDS 30.0%
!! ACCACAAAAGCATTATGTTT+AGG - Chr1:81059406-81059425 None:intergenic 30.0%
!! AGGACGATGACTTTTATTTA+AGG - Chr1:81059212-81059231 None:intergenic 30.0%
!! CACAAAAGCATTATGTTTAG+GGG - Chr1:81059404-81059423 None:intergenic 30.0%
!! CCACAAAAGCATTATGTTTA+GGG - Chr1:81059405-81059424 None:intergenic 30.0%
!! TAGTCATGTTTTATTGATCC+AGG + Chr1:81060110-81060129 MsG0180004671.01.T01:intron 30.0%
!! TCCTTTTAGAAATCCTATCT+AGG + Chr1:81058164-81058183 MsG0180004671.01.T01:intron 30.0%
!! TTTGAAGTTGATGATTGACA+TGG + Chr1:81059260-81059279 MsG0180004671.01.T01:intron 30.0%
!! TTTTGAGTCAAGGTTAACAA+CGG + Chr1:81059359-81059378 MsG0180004671.01.T01:intron 30.0%
AAGAAAAAGGAGATACCGAA+TGG - Chr1:81059143-81059162 None:intergenic 35.0%
ACACGCTATAAGTTGTTATG+AGG + Chr1:81059637-81059656 MsG0180004671.01.T01:intron 35.0%
ACATTGGATGTGAGTTACAT+GGG + Chr1:81058068-81058087 MsG0180004671.01.T01:CDS 35.0%
ATGCTTTGTCAGCTAAAACA+TGG - Chr1:81060019-81060038 None:intergenic 35.0%
ATTAAGCCTATCATCGAATG+AGG - Chr1:81058431-81058450 None:intergenic 35.0%
CATGTTTGGCAGATTAAAGA+TGG + Chr1:81058028-81058047 MsG0180004671.01.T01:intron 35.0%
CGTGAACAAATTGCATAAGA+GGG - Chr1:81057727-81057746 None:intergenic 35.0%
GAATACGAATGCAAAATGAG+AGG + Chr1:81057657-81057676 MsG0180004671.01.T01:CDS 35.0%
GATTTCCCAAATACCTAGAT+AGG - Chr1:81058180-81058199 None:intergenic 35.0%
GGTCTATAAAGAAGATACTC+AGG - Chr1:81059802-81059821 None:intergenic 35.0%
TAAAAGTGACAAGACTGCAA+GGG - Chr1:81059003-81059022 None:intergenic 35.0%
TAACAATAGACAAAGCAGTC+TGG - Chr1:81057750-81057769 None:intergenic 35.0%
TATCTCATTAACTGTGAACG+CGG - Chr1:81057852-81057871 None:intergenic 35.0%
TCTCTTTGATTAAGTGTGTC+TGG + Chr1:81059291-81059310 MsG0180004671.01.T01:intron 35.0%
TGCTTTGTCAGCTAAAACAT+GGG - Chr1:81060018-81060037 None:intergenic 35.0%
TTAAAAGTGACAAGACTGCA+AGG - Chr1:81059004-81059023 None:intergenic 35.0%
TTGATTAAGTGTGTCTGGTT+TGG + Chr1:81059296-81059315 MsG0180004671.01.T01:intron 35.0%
! AGAAACTAACAAGCATTGTG+TGG + Chr1:81059077-81059096 MsG0180004671.01.T01:CDS 35.0%
! CCCTAAACATAATGCTTTTG+TGG + Chr1:81059402-81059421 MsG0180004671.01.T01:intron 35.0%
! TATTGCACTTCTTTTGGACT+GGG + Chr1:81058493-81058512 MsG0180004671.01.T01:intron 35.0%
! TTATTCTAGGAACGATCAGA+AGG + Chr1:81057947-81057966 MsG0180004671.01.T01:CDS 35.0%
!! GTTGATGATTGACATGGTAT+TGG + Chr1:81059266-81059285 MsG0180004671.01.T01:intron 35.0%
!!! AGATGGAGATCTTGTTTTGA+TGG + Chr1:81058045-81058064 MsG0180004671.01.T01:CDS 35.0%
!!! GATCTTGTTTTGATGGACAT+TGG + Chr1:81058052-81058071 MsG0180004671.01.T01:CDS 35.0%
AAACAGTGAACCGTGTGAAA+TGG + Chr1:81059874-81059893 MsG0180004671.01.T01:intron 40.0%
AAGCTGAACCCAACTTCTAT+AGG + Chr1:81059979-81059998 MsG0180004671.01.T01:CDS 40.0%
ACATCAGATCCCCTAAACAA+AGG - Chr1:81058818-81058837 None:intergenic 40.0%
ACTATACAGTCTGCTTGTCT+TGG - Chr1:81058389-81058408 None:intergenic 40.0%
AGATAGACACTAAGCACAGA+CGG - Chr1:81059824-81059843 None:intergenic 40.0%
ATCAGATCCCCTAAACAAAG+GGG - Chr1:81058816-81058835 None:intergenic 40.0%
ATCTCATTAACTGTGAACGC+GGG - Chr1:81057851-81057870 None:intergenic 40.0%
ATTGATCCAGGTCACTATCT+AGG + Chr1:81060122-81060141 MsG0180004671.01.T01:intron 40.0%
CAGCTAGCATACCTTCAAAA+GGG - Chr1:81057629-81057648 None:intergenic 40.0%
CATCAGATCCCCTAAACAAA+GGG - Chr1:81058817-81058836 None:intergenic 40.0%
CCGAATGGTTGTGTATTTGT+CGG - Chr1:81059128-81059147 None:intergenic 40.0%
CCGACAAATACACAACCATT+CGG + Chr1:81059125-81059144 MsG0180004671.01.T01:CDS 40.0%
GACATTGGATGTGAGTTACA+TGG + Chr1:81058067-81058086 MsG0180004671.01.T01:CDS 40.0%
GAGGACTACAATGGAAAACT+AGG - Chr1:81058412-81058431 None:intergenic 40.0%
GCGTGAACAAATTGCATAAG+AGG - Chr1:81057728-81057747 None:intergenic 40.0%
GGATTGAATCTGATACAGAG+AGG - Chr1:81057891-81057910 None:intergenic 40.0%
TAAGACATTGGGATAGCAGA+AGG - Chr1:81058894-81058913 None:intergenic 40.0%
TAGAAGTTGGGTTCAGCTTA+TGG - Chr1:81059978-81059997 None:intergenic 40.0%
TCAGGGAACAAGAAACAACT+AGG - Chr1:81058647-81058666 None:intergenic 40.0%
TCATCGAATGAGGACTACAA+TGG - Chr1:81058421-81058440 None:intergenic 40.0%
TGTAGTCCTCATTCGATGAT+AGG + Chr1:81058422-81058441 MsG0180004671.01.T01:intron 40.0%
TTTACTCAAGGTATGGATGC+TGG - Chr1:81058594-81058613 None:intergenic 40.0%
! GTATTGCACTTCTTTTGGAC+TGG + Chr1:81058492-81058511 MsG0180004671.01.T01:intron 40.0%
!! GTCTGGTTTGGTTTCACATT+GGG + Chr1:81059308-81059327 MsG0180004671.01.T01:intron 40.0%
!! TGTCTGGTTTGGTTTCACAT+TGG + Chr1:81059307-81059326 MsG0180004671.01.T01:intron 40.0%
AAACAACCATAGTGTGCCAG+TGG + Chr1:81059776-81059795 MsG0180004671.01.T01:intron 45.0%
AAAGAAGATACTCAGGCCAC+TGG - Chr1:81059795-81059814 None:intergenic 45.0%
AATGCTGCAGAAAGGACTCA+AGG + Chr1:81059915-81059934 MsG0180004671.01.T01:CDS 45.0%
ACCAGGCTACCTATAGAAGT+TGG - Chr1:81059991-81060010 None:intergenic 45.0%
AGGAGGTCATAGATGCCAAA+TGG + Chr1:81057529-81057548 MsG0180004671.01.T01:intron 45.0%
AGTTGGGTTCAGCTTATGGT+AGG - Chr1:81059974-81059993 None:intergenic 45.0%
ATACCCGACATATGGCATGT+GGG + Chr1:81058853-81058872 MsG0180004671.01.T01:intron 45.0%
ATCAGATTCAATCCCGTGGT+TGG + Chr1:81057897-81057916 MsG0180004671.01.T01:intron 45.0%
ATTTGTCGGATACTAGCACC+AGG - Chr1:81059114-81059133 None:intergenic 45.0%
CCAGGCTACCTATAGAAGTT+GGG - Chr1:81059990-81060009 None:intergenic 45.0%
CTGTATCAGATTCAATCCCG+TGG + Chr1:81057893-81057912 MsG0180004671.01.T01:intron 45.0%
GAACCAAACCATGCTAACCT+GGG - Chr1:81058146-81058165 None:intergenic 45.0%
GATAGACACTAAGCACAGAC+GGG - Chr1:81059823-81059842 None:intergenic 45.0%
GCAGCTAGCATACCTTCAAA+AGG - Chr1:81057630-81057649 None:intergenic 45.0%
GTTCCCTGACAAAATGCAGA+TGG + Chr1:81058658-81058677 MsG0180004671.01.T01:intron 45.0%
TCAGATCCCCTAAACAAAGG+GGG - Chr1:81058815-81058834 None:intergenic 45.0%
TCCAGGTCACTATCTAGGAA+TGG + Chr1:81060127-81060146 MsG0180004671.01.T01:intron 45.0%
TCCATTCCTAGATAGTGACC+TGG - Chr1:81060131-81060150 None:intergenic 45.0%
TGCAACCAGACCATTTCACA+CGG - Chr1:81059887-81059906 None:intergenic 45.0%
TGTGTGGAACTTTGTAAGCC+TGG + Chr1:81059093-81059112 MsG0180004671.01.T01:CDS 45.0%
! CAGGTTGAAATGCTGCAGAA+AGG + Chr1:81059907-81059926 MsG0180004671.01.T01:intron 45.0%
! CCACCATCTGCATTTTGTCA+GGG - Chr1:81058664-81058683 None:intergenic 45.0%
! CTTCATGCCCCCTTTGTTTA+GGG + Chr1:81058805-81058824 MsG0180004671.01.T01:intron 45.0%
! TAAACAAAGGGGGCATGAAG+AGG - Chr1:81058805-81058824 None:intergenic 45.0%
! TCTTCATGCCCCCTTTGTTT+AGG + Chr1:81058804-81058823 MsG0180004671.01.T01:intron 45.0%
! TGAAGGTATGCTAGCTGCAA+AGG + Chr1:81057632-81057651 MsG0180004671.01.T01:CDS 45.0%
! TTCATGCCCCCTTTGTTTAG+GGG + Chr1:81058806-81058825 MsG0180004671.01.T01:intron 45.0%
AGATTCAATCCCGTGGTTGG+TGG + Chr1:81057900-81057919 MsG0180004671.01.T01:intron 50.0%
CAGAAAGGACTCAAGGAGGT+TGG + Chr1:81059922-81059941 MsG0180004671.01.T01:CDS 50.0%
CATACCCGACATATGGCATG+TGG + Chr1:81058852-81058871 MsG0180004671.01.T01:intron 50.0%
CCCAACTTCTATAGGTAGCC+TGG + Chr1:81059987-81060006 MsG0180004671.01.T01:intron 50.0%
CCCTGACAAAATGCAGATGG+TGG + Chr1:81058661-81058680 MsG0180004671.01.T01:intron 50.0%
CTTACAACACCTGGCTTCAG+AGG - Chr1:81060188-81060207 None:intergenic 50.0%
GAAGAGAAGCTACCACAAGG+TGG - Chr1:81058121-81058140 None:intergenic 50.0%
GCAGAAGAGAAGCTACCACA+AGG - Chr1:81058124-81058143 None:intergenic 50.0%
GGAACCAAACCATGCTAACC+TGG - Chr1:81058147-81058166 None:intergenic 50.0%
GTGAAATGGTCTGGTTGCAC+AGG + Chr1:81059888-81059907 MsG0180004671.01.T01:intron 50.0%
GTGAACCGTGTGAAATGGTC+TGG + Chr1:81059879-81059898 MsG0180004671.01.T01:intron 50.0%
TACCCGACATATGGCATGTG+GGG + Chr1:81058854-81058873 MsG0180004671.01.T01:intron 50.0%
! GCCACCATCTGCATTTTGTC+AGG - Chr1:81058665-81058684 None:intergenic 50.0%
!! GGGAAAGCACTTACAACACC+TGG - Chr1:81060197-81060216 None:intergenic 50.0%
!! TTTGACTGTCCTCTGAAGCC+AGG + Chr1:81060176-81060195 MsG0180004671.01.T01:CDS 50.0%
ATTAGGCCCACCACCAACCA+CGG - Chr1:81057913-81057932 None:intergenic 55.0%
CTCTTCTGCCCAGGTTAGCA+TGG + Chr1:81058135-81058154 MsG0180004671.01.T01:intron 55.0%
CTGCCCAGGTTAGCATGGTT+TGG + Chr1:81058140-81058159 MsG0180004671.01.T01:intron 55.0%
CTGCCCCACATGCCATATGT+CGG - Chr1:81058860-81058879 None:intergenic 55.0%
GCCATATGTCGGGTATGTGC+AGG - Chr1:81058849-81058868 None:intergenic 55.0%
GCCTGCACATACCCGACATA+TGG + Chr1:81058845-81058864 MsG0180004671.01.T01:intron 55.0%
GCTAAAACATGGGCGTGACC+AGG - Chr1:81060008-81060027 None:intergenic 55.0%
GCTGCAGAAAGGACTCAAGG+AGG + Chr1:81059918-81059937 MsG0180004671.01.T01:CDS 55.0%
GTCGGGTATGTGCAGGCTTT+AGG - Chr1:81058842-81058861 None:intergenic 55.0%
TGCCCCACATGCCATATGTC+GGG - Chr1:81058859-81058878 None:intergenic 55.0%
TGGTAGCTTCTCTTCTGCCC+AGG + Chr1:81058126-81058145 MsG0180004671.01.T01:CDS 55.0%
! AATGAGAGGTGCGCAGCGAA+TGG + Chr1:81057671-81057690 MsG0180004671.01.T01:CDS 55.0%
! ATGAGAGGTGCGCAGCGAAT+GGG + Chr1:81057672-81057691 MsG0180004671.01.T01:CDS 55.0%
!! TCAATCCCGTGGTTGGTGGT+GGG + Chr1:81057904-81057923 MsG0180004671.01.T01:CDS 55.0%
!! TTCAATCCCGTGGTTGGTGG+TGG + Chr1:81057903-81057922 MsG0180004671.01.T01:CDS 55.0%
CTCAGGCCACTGGCACACTA+TGG - Chr1:81059785-81059804 None:intergenic 60.0%
GAAGCTACCACAAGGTGGCC+AGG - Chr1:81058116-81058135 None:intergenic 60.0%
TCAGCGATCTCACGCGTACC+TGG + Chr1:81058095-81058114 MsG0180004671.01.T01:CDS 60.0%
TTAGGCCCACCACCAACCAC+GGG - Chr1:81057912-81057931 None:intergenic 60.0%
! TGAGAGGTGCGCAGCGAATG+GGG + Chr1:81057673-81057692 MsG0180004671.01.T01:CDS 60.0%
!! GTGGTTGGTGGTGGGCCTAA+TGG + Chr1:81057912-81057931 MsG0180004671.01.T01:CDS 60.0%
ACGCGTACCTGGCCACCTTG+TGG + Chr1:81058106-81058125 MsG0180004671.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 81057515 81060223 81057515 ID=MsG0180004671.01;Name=MsG0180004671.01
Chr1 mRNA 81057515 81060223 81057515 ID=MsG0180004671.01.T01;Parent=MsG0180004671.01;Name=MsG0180004671.01.T01;_AED=0.50;_eAED=0.53;_QI=0|0.83|0.71|1|0.83|0.85|7|0|190
Chr1 exon 81057515 81057533 81057515 ID=MsG0180004671.01.T01:exon:8292;Parent=MsG0180004671.01.T01
Chr1 exon 81057592 81057694 81057592 ID=MsG0180004671.01.T01:exon:8293;Parent=MsG0180004671.01.T01
Chr1 exon 81057902 81057968 81057902 ID=MsG0180004671.01.T01:exon:8294;Parent=MsG0180004671.01.T01
Chr1 exon 81058040 81058147 81058040 ID=MsG0180004671.01.T01:exon:8295;Parent=MsG0180004671.01.T01
Chr1 exon 81059054 81059146 81059054 ID=MsG0180004671.01.T01:exon:8296;Parent=MsG0180004671.01.T01
Chr1 exon 81059910 81060000 81059910 ID=MsG0180004671.01.T01:exon:8297;Parent=MsG0180004671.01.T01
Chr1 exon 81060132 81060223 81060132 ID=MsG0180004671.01.T01:exon:8298;Parent=MsG0180004671.01.T01
Chr1 CDS 81057515 81057533 81057515 ID=MsG0180004671.01.T01:cds;Parent=MsG0180004671.01.T01
Chr1 CDS 81057592 81057694 81057592 ID=MsG0180004671.01.T01:cds;Parent=MsG0180004671.01.T01
Chr1 CDS 81057902 81057968 81057902 ID=MsG0180004671.01.T01:cds;Parent=MsG0180004671.01.T01
Chr1 CDS 81058040 81058147 81058040 ID=MsG0180004671.01.T01:cds;Parent=MsG0180004671.01.T01
Chr1 CDS 81059054 81059146 81059054 ID=MsG0180004671.01.T01:cds;Parent=MsG0180004671.01.T01
Chr1 CDS 81059910 81060000 81059910 ID=MsG0180004671.01.T01:cds;Parent=MsG0180004671.01.T01
Chr1 CDS 81060132 81060223 81060132 ID=MsG0180004671.01.T01:cds;Parent=MsG0180004671.01.T01
Gene Sequence

>MsG0180004671.01.T01

ATGCAGATTTGTTTAGGAGGCTCTTTTGTCAACAATGATGCATTCAAAACATACCCTTTTGAAGGTATGCTAGCTGCAAAGGTCGAATACGAATGCAAAATGAGAGGTGCGCAGCGAATGGGATTCAATCCCGTGGTTGGTGGTGGGCCTAATGGAAGTGTTATACATTATTCTAGGAACGATCAGAAGATTAAAGATGGAGATCTTGTTTTGATGGACATTGGATGTGAGTTACATGGGTATCTCAGCGATCTCACGCGTACCTGGCCACCTTGTGGTAGCTTCTCTTCTGCCCAGGAAGAGCTTTATGAGCTTATACTAGAAACTAACAAGCATTGTGTGGAACTTTGTAAGCCTGGTGCTAGTATCCGACAAATACACAACCATTCGGTTGAAATGCTGCAGAAAGGACTCAAGGAGGTTGGAATATTGAAAGATGTTGGAAGCAGTTCCTACCATAAGCTGAACCCAACTTCTATAGGTCACTATCTAGGAATGGATATTCATGATTGTTCAGCGATCAGCTTTGACTGTCCTCTGAAGCCAGGTGTTGTAAGTGCTTTCCCTGACTGA
Protein sequence

>MsG0180004671.01.T01

MQICLGGSFVNNDAFKTYPFEGMLAAKVEYECKMRGAQRMGFNPVVGGGPNGSVIHYSRNDQKIKDGDLVLMDIGCELHGYLSDLTRTWPPCGSFSSAQEELYELILETNKHCVELCKPGASIRQIHNHSVEMLQKGLKEVGILKDVGSSSYHKLNPTSIGHYLGMDIHDCSAISFDCPLKPGVVSAFPD*