AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021356.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021356.01.T01 MTR_4g072060 98.706 309 4 0 1 309 1 309 0.0 637
MsG0480021356.01.T01 MTR_8g070095 42.705 281 147 5 5 281 10 280 4.96e-76 235
MsG0480021356.01.T01 MTR_7g063580 42.143 280 147 4 5 282 50 316 9.02e-69 218
MsG0480021356.01.T01 MTR_8g070115 40.071 282 155 4 3 282 8 277 9.40e-69 217
MsG0480021356.01.T01 MTR_6g073110 40.893 291 156 6 3 287 9 289 3.53e-66 210
MsG0480021356.01.T01 MTR_4g072360 38.514 296 166 6 3 292 9 294 5.99e-66 210
MsG0480021356.01.T01 MTR_4g072320 39.792 289 158 6 3 288 9 284 1.12e-65 209
MsG0480021356.01.T01 MTR_4g036845 38.380 284 163 4 3 284 6 279 6.93e-65 207
MsG0480021356.01.T01 MTR_4g072350 38.176 296 167 6 3 292 9 294 1.61e-64 206
MsG0480021356.01.T01 MTR_4g021350 40.714 280 150 5 5 282 10 275 2.24e-63 202
MsG0480021356.01.T01 MTR_0374s0050 36.913 298 172 7 11 302 20 307 5.68e-63 202
MsG0480021356.01.T01 MTR_4g021350 40.714 280 150 5 5 282 10 275 6.82e-63 201
MsG0480021356.01.T01 MTR_4g021450 40.767 287 143 4 5 288 11 273 1.34e-62 201
MsG0480021356.01.T01 MTR_4g021410 40.418 287 144 4 5 288 11 273 1.81e-61 197
MsG0480021356.01.T01 MTR_3g083130 36.184 304 178 6 10 308 20 312 6.84e-58 189
MsG0480021356.01.T01 MTR_5g097900 39.088 307 172 6 6 308 15 310 3.47e-57 187
MsG0480021356.01.T01 MTR_5g097910 39.088 307 172 6 6 308 15 310 3.59e-57 187
MsG0480021356.01.T01 MTR_5g097940 39.088 307 172 6 6 308 15 310 3.59e-57 187
MsG0480021356.01.T01 MTR_4g021410 41.270 252 121 4 34 282 3 230 3.20e-53 175
MsG0480021356.01.T01 MTR_7g070500 39.502 281 153 6 5 283 17 282 1.06e-51 172
MsG0480021356.01.T01 MTR_7g070500 37.838 296 167 6 2 295 14 294 1.06e-51 173
MsG0480021356.01.T01 MTR_4g021450 38.009 221 110 4 71 288 1 197 1.35e-35 128
MsG0480021356.01.T01 MTR_4g021410 38.009 221 110 4 71 288 1 197 3.13e-35 127
MsG0480021356.01.T01 MTR_4g021450 37.821 156 88 2 134 288 7 154 2.65e-31 116
MsG0480021356.01.T01 MTR_6g086545 88.000 50 6 0 58 107 36 85 3.07e-24 94.7
MsG0480021356.01.T01 MTR_7g114990 27.385 325 161 12 8 288 22 315 1.35e-18 85.5
MsG0480021356.01.T01 MTR_7g114980 25.846 325 172 10 8 288 20 319 7.79e-16 77.4
MsG0480021356.01.T01 MTR_6g072650 34.426 122 55 1 171 292 14 110 8.46e-16 73.2
MsG0480021356.01.T01 MTR_7g115010 25.776 322 168 11 3 288 12 298 2.58e-14 72.8
MsG0480021356.01.T01 MTR_7g021680 25.697 323 166 9 6 284 11 303 7.01e-14 71.6
MsG0480021356.01.T01 MTR_7g021820 25.697 323 166 9 6 284 11 303 7.01e-14 71.6
MsG0480021356.01.T01 MTR_6g072710 32.407 108 70 1 186 293 2 106 7.23e-14 67.4
MsG0480021356.01.T01 MTR_1g102750 24.567 289 152 8 37 288 51 310 3.80e-13 69.3
MsG0480021356.01.T01 MTR_3g092140 22.807 285 166 9 33 284 79 342 1.14e-11 65.5
MsG0480021356.01.T01 MTR_7g114980 25.084 299 157 9 8 264 20 293 5.05e-11 62.8
MsG0480021356.01.T01 MTR_1g102750 24.345 267 142 6 47 282 65 302 6.14e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021356.01.T01 AT2G21250 86.084 309 43 0 1 309 1 309 0.0 568
MsG0480021356.01.T01 AT2G21260 84.790 309 47 0 1 309 1 309 0.0 560
MsG0480021356.01.T01 AT2G21250 87.554 233 29 0 1 233 1 233 1.79e-156 437
MsG0480021356.01.T01 AT2G21260 83.544 237 39 0 73 309 5 241 5.99e-153 428
MsG0480021356.01.T01 AT2G37790 41.844 282 149 6 5 284 10 278 6.35e-75 233
MsG0480021356.01.T01 AT2G37770 41.727 278 148 5 5 280 10 275 1.38e-74 232
MsG0480021356.01.T01 AT2G37760 40.357 280 149 4 5 282 10 273 8.07e-70 219
MsG0480021356.01.T01 AT2G37760 40.357 280 149 4 5 282 10 273 1.05e-69 218
MsG0480021356.01.T01 AT2G37760 40.357 280 149 4 5 282 10 273 1.05e-69 218
MsG0480021356.01.T01 AT2G37760 40.357 280 149 4 5 282 10 273 3.98e-69 218
MsG0480021356.01.T01 AT2G37760 40.357 280 149 4 5 282 10 273 3.98e-69 218
MsG0480021356.01.T01 AT3G53880 39.643 280 155 6 5 282 10 277 8.54e-68 214
MsG0480021356.01.T01 AT3G53880 39.643 280 155 6 5 282 10 277 1.13e-67 214
MsG0480021356.01.T01 AT5G01670 38.384 297 166 6 2 296 15 296 1.51e-67 214
MsG0480021356.01.T01 AT1G59960 37.457 291 166 6 11 295 21 301 5.13e-63 202
MsG0480021356.01.T01 AT5G01670 35.185 324 166 6 2 296 15 323 7.19e-63 202
MsG0480021356.01.T01 AT5G62420 35.294 289 176 4 5 291 8 287 5.29e-62 199
MsG0480021356.01.T01 AT2G37770 43.284 201 103 3 5 203 10 201 8.29e-54 177
MsG0480021356.01.T01 AT1G59950 38.028 284 160 6 11 288 15 288 8.31e-53 176
MsG0480021356.01.T01 AT2G37760 37.768 233 131 3 52 282 7 227 5.72e-51 169
MsG0480021356.01.T01 AT2G37760 37.768 233 131 3 52 282 7 227 5.72e-51 169
MsG0480021356.01.T01 AT1G60750 25.899 278 153 8 29 284 46 292 7.82e-14 71.2
MsG0480021356.01.T01 AT5G53580 24.913 289 153 11 33 283 80 342 1.23e-12 68.2
MsG0480021356.01.T01 AT1G60680 25.566 309 171 11 17 292 34 316 3.94e-12 66.6

Find 80 sgRNAs with CRISPR-Local

Find 333 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCTTCAGTTAGATTATC+TGG 0.178661 4:-57028320 MsG0480021356.01.T01:CDS
CTAATCAACCGGCCAAGTTT+TGG 0.265438 4:-57026216 MsG0480021356.01.T01:CDS
CAATCATTGGACTTGGAGTT+TGG 0.270385 4:-57028916 MsG0480021356.01.T01:CDS
CCCGCCGTTATCAAATCTTT+TGG 0.271718 4:-57025986 MsG0480021356.01.T01:three_prime_UTR
TGCCCAGATTTCTCTTCGTT+GGG 0.314026 4:-57026374 MsG0480021356.01.T01:CDS
CCAGGTAGTTTCCAGGGATA+TGG 0.324257 4:+57027456 None:intergenic
CTGCCCAGATTTCTCTTCGT+TGG 0.333212 4:-57026375 MsG0480021356.01.T01:CDS
TTTGGCATATGCTAAACTTT+TGG 0.338141 4:-57026077 MsG0480021356.01.T01:three_prime_UTR
AGGCCTTGTTTCATCGGGCT+TGG 0.352439 4:-57027422 MsG0480021356.01.T01:CDS
AGAGACTCGCGCTGGAAGTA+TGG 0.358783 4:+57026669 None:intergenic
CATTCCTAAAACATCAAAAC+TGG 0.371742 4:-57026329 MsG0480021356.01.T01:CDS
TGGTACTACTGATAGTGCTT+TGG 0.377006 4:-57027509 MsG0480021356.01.T01:CDS
ATTGATGATTAGGTCTTTGA+TGG 0.378167 4:+57028877 None:intergenic
ATTTACAGCAGGCTTTATCT+TGG 0.383165 4:+57026707 None:intergenic
GGTACTACTGATAGTGCTTT+GGG 0.398671 4:-57027508 MsG0480021356.01.T01:CDS
AAGATCTATGCCCCAAAACT+TGG 0.402377 4:+57026204 None:intergenic
ATCATCAATTCCATCAAAAT+CGG 0.409845 4:-57028863 MsG0480021356.01.T01:CDS
TCGCATGCCAGGTAGTTTCC+AGG 0.413644 4:+57027449 None:intergenic
CAGCTTTGGAATTCTGATCA+TGG 0.427560 4:-57028376 MsG0480021356.01.T01:CDS
GATGGAAGGCCTTGTTTCAT+CGG 0.446325 4:-57027428 MsG0480021356.01.T01:CDS
ATGGAAGGCCTTGTTTCATC+GGG 0.446988 4:-57027427 MsG0480021356.01.T01:CDS
TGGTTCGCAGCATAGGAATC+AGG 0.448672 4:-57027402 MsG0480021356.01.T01:intron
GTGGATCAAATCTAACAATC+TGG 0.448714 4:+57023813 MsG0480021355.01.T01:CDS
GTTTGGTACAGAGTCATGTT+TGG 0.456307 4:-57026568 MsG0480021356.01.T01:CDS
TCCTTTCTAAACATGTATCA+TGG 0.458545 4:-57026163 MsG0480021356.01.T01:three_prime_UTR
CAGCACCTCCAAGTGGAGTG+TGG 0.464776 4:+57026607 None:intergenic
GAGATTGAAAGAGAACTTCC+AGG 0.476154 4:-57026305 MsG0480021356.01.T01:CDS
GAAATATCGAACTAATCAAC+CGG 0.481471 4:-57026227 MsG0480021356.01.T01:CDS
AAGATGCCAATCATTGGACT+TGG 0.484856 4:-57028923 MsG0480021356.01.T01:CDS
AAGGCCTTCCATCGCATGCC+AGG 0.485617 4:+57027438 None:intergenic
GATAGTGCTTTGGGTGAAGA+TGG 0.488339 4:-57027499 MsG0480021356.01.T01:CDS
GGATTCAAGATGCCAATCAT+TGG 0.488816 4:-57028929 MsG0480021356.01.T01:CDS
CAAACTCCAAGTCCAATGAT+TGG 0.497148 4:+57028917 None:intergenic
TCGGAGTTGCAGAGGTAAGA+AGG 0.501903 4:-57028986 None:intergenic
TCGGGCTTGGTTCGCAGCAT+AGG 0.504308 4:-57027409 MsG0480021356.01.T01:CDS
AGCACCTCCAAGTGGAGTGT+GGG 0.505998 4:+57026608 None:intergenic
GCAGCAAACAAAGAATGGTT+TGG 0.506549 4:-57026585 MsG0480021356.01.T01:CDS
CCAGTGTGCCTAGTGGCTAC+AGG 0.509750 4:+57028277 None:intergenic
TGATACATGTTTAGAAAGGA+AGG 0.515466 4:+57026166 None:intergenic
GCCCAGATTTCTCTTCGTTG+GGG 0.516778 4:-57026373 MsG0480021356.01.T01:CDS
TTTGGGTGAAGATGGGGTGC+TGG 0.520967 4:-57027491 MsG0480021356.01.T01:CDS
CTTGGAGTTTGGCGCATGGA+AGG 0.527245 4:-57028905 MsG0480021356.01.T01:CDS
TAGATATTATGAACTATGCT+TGG 0.531813 4:-57026030 MsG0480021356.01.T01:three_prime_UTR
TGGTCCAAAAGATTTGATAA+CGG 0.532144 4:+57025982 None:intergenic
CCCAGATTTCTCTTCGTTGG+GGG 0.533067 4:-57026372 MsG0480021356.01.T01:CDS
CCAAAAGATTTGATAACGGC+GGG 0.533181 4:+57025986 None:intergenic
GTTTCAATCTGATTTACAGC+AGG 0.535497 4:+57026696 None:intergenic
CCATATCCCTGGAAACTACC+TGG 0.536079 4:-57027456 MsG0480021356.01.T01:CDS
ATAATCAAATTGTACCTTGG+TGG 0.537689 4:+57028647 None:intergenic
AGCTCATCAACGGTATGGAC+AGG 0.538810 4:-57026249 MsG0480021356.01.T01:CDS
TTCACTTTCCTGTAGCCACT+AGG 0.540134 4:-57028285 MsG0480021356.01.T01:CDS
ATAGTGCTTTGGGTGAAGAT+GGG 0.542552 4:-57027498 MsG0480021356.01.T01:CDS
GTGCTGCAGCAAACAAAGAA+TGG 0.545070 4:-57026590 MsG0480021356.01.T01:CDS
TGAGTTGTCTAAAGAGGACA+TGG 0.548008 4:-57026272 MsG0480021356.01.T01:CDS
CTCAAATGAGCTACAATGGA+TGG 0.548043 4:+57026053 None:intergenic
GTAACAGCCCACACTCCACT+TGG 0.555247 4:-57026615 MsG0480021356.01.T01:CDS
TCTACTCAAATGAGCTACAA+TGG 0.559292 4:+57026049 None:intergenic
ACCATGATACATGTTTAGAA+AGG 0.560304 4:+57026162 None:intergenic
CATAGATACAACCATATCCC+TGG 0.561415 4:-57027467 MsG0480021356.01.T01:CDS
CATGGAGCTCATCAACGGTA+TGG 0.562792 4:-57026254 MsG0480021356.01.T01:CDS
ACTACCTGGCATGCGATGGA+AGG 0.563810 4:-57027442 MsG0480021356.01.T01:CDS
CGCATGCCAGGTAGTTTCCA+GGG 0.567596 4:+57027450 None:intergenic
GGAAACTACCTGGCATGCGA+TGG 0.573428 4:-57027446 MsG0480021356.01.T01:CDS
ACAGCCCACACTCCACTTGG+AGG 0.575322 4:-57026612 MsG0480021356.01.T01:CDS
ATACAAGTCTCAAAGTTGAA+AGG 0.587101 4:+57026111 None:intergenic
TTTGCTGCAGCACCTCCAAG+TGG 0.593943 4:+57026600 None:intergenic
CCTGTAGCCACTAGGCACAC+TGG 0.596234 4:-57028277 MsG0480021356.01.T01:intron
TCTATGCCCCAAAACTTGGC+CGG 0.596819 4:+57026208 None:intergenic
ACAACTCAAAATCAAATACC+TGG 0.601173 4:+57026287 None:intergenic
GAACCAAGCCCGATGAAACA+AGG 0.610945 4:+57027419 None:intergenic
TGGACTTGGAGTTTGGCGCA+TGG 0.614053 4:-57028909 MsG0480021356.01.T01:CDS
TGATCATGGACACGTTGTCG+AGG 0.621022 4:-57028362 MsG0480021356.01.T01:CDS
TAGTGCTTTGGGTGAAGATG+GGG 0.627757 4:-57027497 MsG0480021356.01.T01:CDS
TCCAAAAGATTTGATAACGG+CGG 0.633446 4:+57025985 None:intergenic
GATACATGTTTAGAAAGGAA+GGG 0.636790 4:+57026167 None:intergenic
ATTTGACAAGAGACTCGCGC+TGG 0.644693 4:+57026661 None:intergenic
CACTGGACTTGTGAAAAGAG+AGG 0.647026 4:-57028682 MsG0480021356.01.T01:CDS
GAGGACATGGAGCTCATCAA+CGG 0.648344 4:-57026259 MsG0480021356.01.T01:CDS
ATGGCAATCACACTGAACAG+CGG 0.712465 4:-57028950 MsG0480021356.01.T01:CDS
AAACATACCAGTGTGCCTAG+TGG 0.724092 4:+57028270 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTAAAAAAAA+GGG - Chr4:57027287-57027306 MsG0480021356.01.T01:intron 0.0%
!!! TTTTTTTTTTTTTAAAAAAA+AGG - Chr4:57027286-57027305 MsG0480021356.01.T01:intron 0.0%
!! AAAAACTAAAATAAACATAA+GGG + Chr4:57028085-57028104 None:intergenic 10.0%
!! TAAAAACTAAAATAAACATA+AGG + Chr4:57028086-57028105 None:intergenic 10.0%
!! TAAAAAGATTAATAAAACAA+TGG - Chr4:57027090-57027109 MsG0480021356.01.T01:intron 10.0%
!!! AATTTTTTTGACTTAATAAT+TGG + Chr4:57027711-57027730 None:intergenic 10.0%
!!! TATTTTTTTATAAACAATCT+TGG - Chr4:57027496-57027515 MsG0480021356.01.T01:CDS 10.0%
!!! TTGTTTTATTAATCTTTTTA+CGG + Chr4:57027090-57027109 None:intergenic 10.0%
!! ATATATAAATGCTAAAACAT+TGG - Chr4:57024872-57024891 MsG0480021356.01.T01:intron 15.0%
!! ATTATATACATATGTGAAAT+AGG - Chr4:57024159-57024178 MsG0480021356.01.T01:intron 15.0%
!! ATTGACATCTAATAATAAAA+TGG - Chr4:57024919-57024938 MsG0480021356.01.T01:intron 15.0%
!! GAAAACTAAAATAAACATAA+GGG - Chr4:57028317-57028336 MsG0480021356.01.T01:CDS 15.0%
!! GAAAACTAAAATAAACATAA+GGG + Chr4:57028336-57028317 None:intergenic 15.0%
!! TAGAAATTGTTAATCTATTT+GGG + Chr4:57024347-57024366 None:intergenic 15.0%
!! TGAAAACTAAAATAAACATA+AGG - Chr4:57028316-57028335 MsG0480021356.01.T01:CDS 15.0%
!! TGAAAACTAAAATAAACATA+AGG + Chr4:57028335-57028316 None:intergenic 15.0%
!!! ATGAATTTTACCTAATAATA+AGG - Chr4:57025491-57025510 MsG0480021356.01.T01:intron 15.0%
!!! GTTTATTTTAGTTTTTAAGT+TGG - Chr4:57028089-57028108 MsG0480021356.01.T01:intron 15.0%
!! AATTATACTTCTATCTAGAA+TGG - Chr4:57027727-57027746 MsG0480021356.01.T01:intron 20.0%
!! ACACAAATTATACTTAAGAT+GGG + Chr4:57025940-57025959 None:intergenic 20.0%
!! AGCCAAAAAAAATGTTATAA+TGG - Chr4:57024797-57024816 MsG0480021356.01.T01:intron 20.0%
!! ATCATGATATTACTAACTAA+CGG - Chr4:57025714-57025733 MsG0480021356.01.T01:intron 20.0%
!! ATTACTAATATCAGTGAAAA+AGG - Chr4:57027232-57027251 MsG0480021356.01.T01:intron 20.0%
!! CAATTTCTACTTAGTTATTA+TGG - Chr4:57024358-57024377 MsG0480021356.01.T01:intron 20.0%
!! CCAAAAAAAATGTTATAATG+GGG - Chr4:57024799-57024818 MsG0480021356.01.T01:intron 20.0%
!! GAAAACTAAAATAAACGTAT+GGG + Chr4:57028145-57028164 None:intergenic 20.0%
!! GCCAAAAAAAATGTTATAAT+GGG - Chr4:57024798-57024817 MsG0480021356.01.T01:intron 20.0%
!! GTAGAAATTGTTAATCTATT+TGG + Chr4:57024348-57024367 None:intergenic 20.0%
!! TAAGCATTATTATTCCATTA+GGG + Chr4:57025861-57025880 None:intergenic 20.0%
!! TATATAATCAAATTGTACCT+TGG + Chr4:57024147-57024166 MsG0480021355.01.T01:three_prime_UTR 20.0%
!! TGAAAACTAAAATAAACGTA+TGG + Chr4:57028146-57028165 None:intergenic 20.0%
!! TGGTTAAAAGATAAGATAAT+AGG + Chr4:57026301-57026320 None:intergenic 20.0%
!! TTCTATACATTCTATTTACT+TGG - Chr4:57024698-57024717 MsG0480021356.01.T01:intron 20.0%
!! TTGAAACTTTCAAAACATAA+GGG + Chr4:57028116-57028135 None:intergenic 20.0%
!! TTGACTATTTCCTTATTATT+AGG + Chr4:57025504-57025523 None:intergenic 20.0%
!! TTTGAATGGTTATAACTATT+AGG + Chr4:57028539-57028558 None:intergenic 20.0%
!! TTTGTCTAATCTATTGAAAA+GGG - Chr4:57025899-57025918 MsG0480021356.01.T01:intron 20.0%
!!! AATAAGTTGAAAATAACTTG+TGG - Chr4:57027531-57027550 MsG0480021356.01.T01:intron 20.0%
!!! AATTCATTATCCATTGATTT+CGG + Chr4:57027779-57027798 None:intergenic 20.0%
!!! ACGTTTTTGAAATATTGAAA+AGG - Chr4:57026929-57026948 MsG0480021356.01.T01:intron 20.0%
!!! ATTTAATTTGTATACATCGA+CGG + Chr4:57024197-57024216 None:intergenic 20.0%
!!! ATTTATTGTATTTTTCACCA+AGG + Chr4:57027040-57027059 None:intergenic 20.0%
!!! ATTTGGGATAAAATCAATTA+TGG + Chr4:57024331-57024350 None:intergenic 20.0%
!!! CAAAGTATTGATATACTAAT+TGG - Chr4:57024608-57024627 MsG0480021356.01.T01:intron 20.0%
!!! CATTTTTCATTCAATAATGT+CGG - Chr4:57027576-57027595 MsG0480021356.01.T01:intron 20.0%
!!! GTAAATTCCAGAAAATTTTA+TGG + Chr4:57027898-57027917 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTCAAGT+CGG + Chr4:57028168-57028149 None:intergenic 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG - Chr4:57028149-57028168 MsG0480021356.01.T01:intron 20.0%
!!! GTTTATTTTAGTTTTCAAGT+TGG + Chr4:57028168-57028149 None:intergenic 20.0%
!!! TGAAAACTTTTAAAACGTAA+GGG - Chr4:57028407-57028426 MsG0480021356.01.T01:intron 20.0%
!!! TGTTAATTTGAGTTTTTGAA+TGG + Chr4:57028553-57028572 None:intergenic 20.0%
!!! TTGAAAACTTTTAAAACGTA+AGG - Chr4:57028406-57028425 MsG0480021356.01.T01:intron 20.0%
!!! TTTTTTTACTCCTTCAAATT+TGG - Chr4:57023980-57023999 MsG0480021356.01.T01:intron 20.0%
! AAACATAGAAGTAGTTAACA+AGG - Chr4:57024957-57024976 MsG0480021356.01.T01:intron 25.0%
! AAATTCACAGTTATCTATAG+AGG + Chr4:57025190-57025209 None:intergenic 25.0%
! AATAGAAATTGTGAAACTTC+AGG - Chr4:57027009-57027028 MsG0480021356.01.T01:intron 25.0%
! ACTTAGTTATTATGGCTTAA+TGG - Chr4:57024366-57024385 MsG0480021356.01.T01:intron 25.0%
! AGAAGGAAAGAAAGAAAAAA+TGG - Chr4:57023819-57023838 MsG0480021356.01.T01:three_prime_UTR 25.0%
! AGATTGAAATCCAAATTTGA+AGG + Chr4:57023993-57024012 MsG0480021355.01.T01:CDS 25.0%
! ATCATCAATTCCATCAAAAT+CGG - Chr4:57023925-57023944 MsG0480021356.01.T01:intron 25.0%
! ATGGATAATGAATTCAAAGT+TGG - Chr4:57027785-57027804 MsG0480021356.01.T01:intron 25.0%
! CACACAAATTATACTTAAGA+TGG + Chr4:57025941-57025960 None:intergenic 25.0%
! CATAAACTATAGTCGTAAAA+AGG + Chr4:57025469-57025488 None:intergenic 25.0%
! CATCAAAACTAAAAAGTCAA+GGG + Chr4:57024558-57024577 None:intergenic 25.0%
! CATCTAATAATAAAATGGCA+TGG - Chr4:57024924-57024943 MsG0480021356.01.T01:intron 25.0%
! CTAAGCATTATTATTCCATT+AGG + Chr4:57025862-57025881 None:intergenic 25.0%
! CTTGAAACTTTCAAAACATA+AGG + Chr4:57028117-57028136 None:intergenic 25.0%
! GATTAAGCAACAAAATATTC+TGG + Chr4:57026845-57026864 None:intergenic 25.0%
! GTTTAACCATAGTTATCAAT+AGG - Chr4:57024763-57024782 MsG0480021356.01.T01:intron 25.0%
! GTTTGTCTAATCTATTGAAA+AGG - Chr4:57025898-57025917 MsG0480021356.01.T01:intron 25.0%
! TAGATATTATGAACTATGCT+TGG - Chr4:57026758-57026777 MsG0480021356.01.T01:intron 25.0%
! TCATCAAAACTAAAAAGTCA+AGG + Chr4:57024559-57024578 None:intergenic 25.0%
! TTGAAACTTTCAAAACGTAA+GGG - Chr4:57028377-57028396 MsG0480021356.01.T01:intron 25.0%
! TTGAAACTTTCAAAACGTAA+GGG + Chr4:57028396-57028377 None:intergenic 25.0%
! TTGGATAAATTGTTAAGTGT+GGG + Chr4:57027376-57027395 None:intergenic 25.0%
! TTGTCTAATCTATTGAAAAG+GGG - Chr4:57025900-57025919 MsG0480021356.01.T01:intron 25.0%
! TTTGGATAAATTGTTAAGTG+TGG + Chr4:57027377-57027396 None:intergenic 25.0%
!! AAAATTGCTTGAACACTTTT+TGG + Chr4:57028037-57028056 None:intergenic 25.0%
!! AAAATTTTATGGCATGACAT+AGG + Chr4:57027887-57027906 None:intergenic 25.0%
!! CATCTTAAGTATAATTTGTG+TGG - Chr4:57025939-57025958 MsG0480021356.01.T01:intron 25.0%
!!! ACATAGGTTTTGAAATATCA+CGG + Chr4:57027871-57027890 None:intergenic 25.0%
!!! ATGCACGTTTATGTTATTTT+GGG - Chr4:57025638-57025657 MsG0480021356.01.T01:intron 25.0%
!!! CAAAACACCTTTTTTTTTGA+GGG + Chr4:57028012-57028031 None:intergenic 25.0%
!!! CCCCATTATAACATTTTTTT+TGG + Chr4:57024802-57024821 None:intergenic 25.0%
!!! CGTTTTAAAAGTTTTCAAGT+TGG + Chr4:57028404-57028423 None:intergenic 25.0%
!!! CTTGTATTGACATTTTGATT+TGG - Chr4:57026693-57026712 MsG0480021356.01.T01:CDS 25.0%
!!! GCAATTAAGCCTTTTTTTTA+TGG - Chr4:57028499-57028518 MsG0480021356.01.T01:intron 25.0%
!!! GTGTTCAAGCAATTTTTTTT+AGG - Chr4:57028041-57028060 MsG0480021356.01.T01:intron 25.0%
!!! TACTGATTTTGGATAGATAA+TGG + Chr4:57026321-57026340 None:intergenic 25.0%
!!! TATGCACGTTTATGTTATTT+TGG - Chr4:57025637-57025656 MsG0480021356.01.T01:intron 25.0%
!!! TTCACACATTTGTTTTTGTT+CGG + Chr4:57028826-57028845 None:intergenic 25.0%
!!! TTTTGATGGAATTGATGATT+AGG + Chr4:57023924-57023943 MsG0480021355.01.T01:intron 25.0%
!!! TTTTGGTTTGGGATATTTTA+AGG - Chr4:57024741-57024760 MsG0480021356.01.T01:intron 25.0%
!!! TTTTTTTGAGACAACTTTTC+TGG + Chr4:57028923-57028942 None:intergenic 25.0%
AAAAGGCTTAATTGCATGTT+TGG + Chr4:57028494-57028513 None:intergenic 30.0%
AAAGAAATCTCAGTATCACA+TGG - Chr4:57027832-57027851 MsG0480021356.01.T01:intron 30.0%
AACTAATGACCAAACTTGAT+AGG - Chr4:57025542-57025561 MsG0480021356.01.T01:intron 30.0%
AATAGGCTACTAATATGTGT+TGG + Chr4:57026284-57026303 None:intergenic 30.0%
AATGAAAACAGTTTAAGTGC+GGG + Chr4:57027400-57027419 None:intergenic 30.0%
AATTCAGTTCTCAATCAACA+AGG + Chr4:57027168-57027187 None:intergenic 30.0%
ACAACTCAAAATCAAATACC+TGG + Chr4:57026504-57026523 None:intergenic 30.0%
ACCATGATACATGTTTAGAA+AGG + Chr4:57026629-57026648 None:intergenic 30.0%
AGAAAAAGAGATGTTCAGAT+GGG + Chr4:57025133-57025152 None:intergenic 30.0%
ATAAAGAAAGAAACAGCAAC+AGG - Chr4:57024235-57024254 MsG0480021356.01.T01:intron 30.0%
ATAATCAAATTGTACCTTGG+TGG + Chr4:57024144-57024163 MsG0480021355.01.T01:three_prime_UTR 30.0%
ATACAAGTCTCAAAGTTGAA+AGG + Chr4:57026680-57026699 None:intergenic 30.0%
ATTGAATCTGATTTCAGCTT+TGG - Chr4:57024398-57024417 MsG0480021356.01.T01:intron 30.0%
CAATGAAAACAGTTTAAGTG+CGG + Chr4:57027401-57027420 None:intergenic 30.0%
CATTATTATTCCATTAGGGT+AGG + Chr4:57025857-57025876 None:intergenic 30.0%
CATTCCTAAAACATCAAAAC+TGG - Chr4:57026459-57026478 MsG0480021356.01.T01:intron 30.0%
CTTGAAACTTTCAAAACGTA+AGG - Chr4:57028376-57028395 MsG0480021356.01.T01:CDS 30.0%
CTTGAAACTTTCAAAACGTA+AGG + Chr4:57028395-57028376 None:intergenic 30.0%
GAAATATCGAACTAATCAAC+CGG - Chr4:57026561-57026580 MsG0480021356.01.T01:CDS 30.0%
GATACATGTTTAGAAAGGAA+GGG + Chr4:57026624-57026643 None:intergenic 30.0%
GTAATATGAAACATGTGACA+AGG + Chr4:57025811-57025830 None:intergenic 30.0%
GTTAACAAGGAAACAAAAGA+AGG - Chr4:57024970-57024989 MsG0480021356.01.T01:intron 30.0%
TAAAGAAAGAAACAGCAACA+GGG - Chr4:57024236-57024255 MsG0480021356.01.T01:intron 30.0%
TAGAAAAAGAGATGTTCAGA+TGG + Chr4:57025134-57025153 None:intergenic 30.0%
TATTATGGCTTAATGGTATC+TGG - Chr4:57024373-57024392 MsG0480021356.01.T01:intron 30.0%
TCACAATCTCAGAGAATAAA+TGG - Chr4:57028705-57028724 MsG0480021356.01.T01:CDS 30.0%
TCCTTTCTAAACATGTATCA+TGG - Chr4:57026625-57026644 MsG0480021356.01.T01:CDS 30.0%
TGATACATGTTTAGAAAGGA+AGG + Chr4:57026625-57026644 None:intergenic 30.0%
TGGTCCAAAAGATTTGATAA+CGG + Chr4:57026809-57026828 None:intergenic 30.0%
TGTAAAGAGATGTTTCAGAT+GGG + Chr4:57025028-57025047 None:intergenic 30.0%
TTATCTATAGAGGCCAATAA+TGG + Chr4:57025180-57025199 None:intergenic 30.0%
TTGTAAAGAGATGTTTCAGA+TGG + Chr4:57025029-57025048 None:intergenic 30.0%
TTTAGAAAGTTGAGATAGAC+AGG - Chr4:57024283-57024302 MsG0480021356.01.T01:intron 30.0%
TTTAGGCTTAATTGCATGTT+TGG - Chr4:57028058-57028077 MsG0480021356.01.T01:intron 30.0%
TTTGACTAAAAGGTGGTAAA+AGG - Chr4:57027329-57027348 MsG0480021356.01.T01:intron 30.0%
! AAAATGTTATAATGGGGTAG+TGG - Chr4:57024805-57024824 MsG0480021356.01.T01:intron 30.0%
! AAATCTTTTGGACCAAATGA+GGG - Chr4:57026814-57026833 MsG0480021356.01.T01:intron 30.0%
! AATGCTTAGTTGCTATTGAT+GGG - Chr4:57025873-57025892 MsG0480021356.01.T01:intron 30.0%
! AATTTCTCCAAGTTCTGATT+GGG - Chr4:57027649-57027668 MsG0480021356.01.T01:intron 30.0%
! ATCTGAAACATCTCTTTACA+AGG - Chr4:57025028-57025047 MsG0480021356.01.T01:intron 30.0%
! ATTGATGATTAGGTCTTTGA+TGG + Chr4:57023914-57023933 MsG0480021355.01.T01:intron 30.0%
! TAATGCTTAGTTGCTATTGA+TGG - Chr4:57025872-57025891 MsG0480021356.01.T01:intron 30.0%
! TAATTTCTCCAAGTTCTGAT+TGG - Chr4:57027648-57027667 MsG0480021356.01.T01:intron 30.0%
! TATGTAGAAACTCTTGTTGT+TGG - Chr4:57024579-57024598 MsG0480021356.01.T01:intron 30.0%
! TCTGAAACATCTCTTTACAA+GGG - Chr4:57025029-57025048 MsG0480021356.01.T01:intron 30.0%
! TGTCATGCCATAAAATTTTC+TGG - Chr4:57027888-57027907 MsG0480021356.01.T01:intron 30.0%
! TTCATGCCTATTGATAACTA+TGG + Chr4:57024772-57024791 None:intergenic 30.0%
! TTGGCATATGCTAAACTTTT+GGG - Chr4:57026712-57026731 MsG0480021356.01.T01:CDS 30.0%
! TTTGAAATATCACGGTATCT+CGG + Chr4:57027863-57027882 None:intergenic 30.0%
! TTTGGCATATGCTAAACTTT+TGG - Chr4:57026711-57026730 MsG0480021356.01.T01:CDS 30.0%
! TTTTCTTACACCGAAATCAA+TGG - Chr4:57027766-57027785 MsG0480021356.01.T01:intron 30.0%
!! GTGATGTTTTCTAGCATATT+TGG + Chr4:57026655-57026674 None:intergenic 30.0%
!! TCAGTGAAAAAGGTATTGAA+TGG - Chr4:57027242-57027261 MsG0480021356.01.T01:intron 30.0%
!! TCCCAAACCAAAATTTTGAT+AGG + Chr4:57024734-57024753 None:intergenic 30.0%
!!! AAAAATGCTGTTTTCTACGA+AGG + Chr4:57027563-57027582 None:intergenic 30.0%
!!! ACGTTTTGAAAGTTTCAAGT+TGG + Chr4:57028197-57028178 None:intergenic 30.0%
!!! CTAGTCACATTTACTGATTT+TGG + Chr4:57026345-57026364 None:intergenic 30.0%
!!! CTGATTTTGGATACTGATTT+TGG + Chr4:57026332-57026351 None:intergenic 30.0%
!!! GCAAAACACCTTTTTTTTTG+AGG + Chr4:57028013-57028032 None:intergenic 30.0%
!!! GCCTATCAAAATTTTGGTTT+GGG - Chr4:57024730-57024749 MsG0480021356.01.T01:intron 30.0%
!!! TGATTTTGAGTTGTCTAAAG+AGG - Chr4:57026510-57026529 MsG0480021356.01.T01:intron 30.0%
!!! TGTTGCAGATTTTGACTAAA+AGG - Chr4:57027319-57027338 MsG0480021356.01.T01:intron 30.0%
AAAAAGAGATGTTCAGATGG+GGG + Chr4:57025131-57025150 None:intergenic 35.0%
ACAATGGAAGATCAACTGAT+TGG - Chr4:57027106-57027125 MsG0480021356.01.T01:intron 35.0%
AGTTATCAATAGGCATGAAG+AGG - Chr4:57024773-57024792 MsG0480021356.01.T01:intron 35.0%
ATAATAGCAAAACGACTGCT+TGG - Chr4:57028729-57028748 MsG0480021356.01.T01:CDS 35.0%
ATAGTGACAGTCACCATTAT+TGG - Chr4:57025164-57025183 MsG0480021356.01.T01:intron 35.0%
CAATGGAAGATCAACTGATT+GGG - Chr4:57027107-57027126 MsG0480021356.01.T01:intron 35.0%
GAAAAAGAGATGTTCAGATG+GGG + Chr4:57025132-57025151 None:intergenic 35.0%
GAAGCTTCAGTTAGATTATC+TGG - Chr4:57024468-57024487 MsG0480021356.01.T01:intron 35.0%
GCTCATGCTCCATAAAAAAA+AGG + Chr4:57028511-57028530 None:intergenic 35.0%
GTAAAGAGATGTTTCAGATG+GGG + Chr4:57025027-57025046 None:intergenic 35.0%
GTGCAAATAATAGCAGCTAT+TGG + Chr4:57025083-57025102 None:intergenic 35.0%
GTGGATCAAATCTAACAATC+TGG + Chr4:57028978-57028997 None:intergenic 35.0%
GTTTCAATCTGATTTACAGC+AGG + Chr4:57026095-57026114 None:intergenic 35.0%
TAAAGAGATGTTTCAGATGG+GGG + Chr4:57025026-57025045 None:intergenic 35.0%
TAACATAAACGTGCATATGC+AGG + Chr4:57025634-57025653 None:intergenic 35.0%
TACAAAAACGAAGCAGAAGT+TGG - Chr4:57024059-57024078 MsG0480021356.01.T01:intron 35.0%
TATTATTCCATTAGGGTAGG+CGG + Chr4:57025854-57025873 None:intergenic 35.0%
TATTGAAAAGGGGAATGTGT+TGG - Chr4:57025910-57025929 MsG0480021356.01.T01:intron 35.0%
TCTACTCAAATGAGCTACAA+TGG + Chr4:57026742-57026761 None:intergenic 35.0%
TCTGGTAATATTTCTTCACC+AGG + Chr4:57028905-57028924 None:intergenic 35.0%
! AACTGCGCCTATCAAAATTT+TGG - Chr4:57024724-57024743 MsG0480021356.01.T01:intron 35.0%
! ATACCAGCTATGTGTTTCTA+CGG - Chr4:57028773-57028792 MsG0480021356.01.T01:intron 35.0%
! ATTGTATTTTTCACCAAGGC+AGG + Chr4:57027036-57027055 None:intergenic 35.0%
! ATTTACAGCAGGCTTTATCT+TGG + Chr4:57026084-57026103 None:intergenic 35.0%
! ATTTCTCCAAGTTCTGATTG+GGG - Chr4:57027650-57027669 MsG0480021356.01.T01:intron 35.0%
! CAAATCTTTTGGACCAAATG+AGG - Chr4:57026813-57026832 MsG0480021356.01.T01:intron 35.0%
! CTTAAAGAAGCTTTTGACAC+TGG - Chr4:57024089-57024108 MsG0480021356.01.T01:intron 35.0%
! GTCAAATTTTGTCAGAAGCA+TGG - Chr4:57026143-57026162 MsG0480021356.01.T01:three_prime_UTR 35.0%
! TAAAAAGTCAAGGGAAGCAT+AGG + Chr4:57024549-57024568 None:intergenic 35.0%
!! ATGACGATAACCGATTTTGA+TGG + Chr4:57023938-57023957 MsG0480021355.01.T01:intron 35.0%
!! CTCTCCAGTTTTGATGTTTT+AGG + Chr4:57026466-57026485 None:intergenic 35.0%
!! GTTAAGTGTGGGTATTGATT+TGG + Chr4:57027365-57027384 None:intergenic 35.0%
!! TCCAAAAGATTTGATAACGG+CGG + Chr4:57026806-57026825 None:intergenic 35.0%
!! TCTTTACAAGGGTGTTTGTA+GGG - Chr4:57025040-57025059 MsG0480021356.01.T01:intron 35.0%
!!! AACACCTTTTTTTTTGAGGG+AGG + Chr4:57028009-57028028 None:intergenic 35.0%
!!! CATTTGTTTTTGTTCGGAAC+AGG + Chr4:57028820-57028839 None:intergenic 35.0%
!!! CGCCTATCAAAATTTTGGTT+TGG - Chr4:57024729-57024748 MsG0480021356.01.T01:intron 35.0%
!!! TATCGTCATTTTGATTGTGC+TGG - Chr4:57023949-57023968 MsG0480021356.01.T01:intron 35.0%
!!! TCTCGTGCTCATATTTTTTC+TGG - Chr4:57028600-57028619 MsG0480021356.01.T01:intron 35.0%
!!! TGCAGATTTTGACTAAAAGG+TGG - Chr4:57027322-57027341 MsG0480021356.01.T01:intron 35.0%
AAACAGTTTAAGTGCGGGTT+TGG + Chr4:57027395-57027414 None:intergenic 40.0%
AACACCCAACTCTCAGATTA+CGG + Chr4:57027981-57028000 None:intergenic 40.0%
AAGATCTATGCCCCAAAACT+TGG + Chr4:57026587-57026606 None:intergenic 40.0%
AAGATGCCAATCATTGGACT+TGG - Chr4:57023865-57023884 MsG0480021356.01.T01:intron 40.0%
ATTCTGGATTCTCCCTCATT+TGG + Chr4:57026829-57026848 None:intergenic 40.0%
CAAACTCCAAGTCCAATGAT+TGG + Chr4:57023874-57023893 MsG0480021355.01.T01:intron 40.0%
CAAGTCGGTCCAAAACATAA+GGG + Chr4:57028298-57028317 None:intergenic 40.0%
CAATCATTGGACTTGGAGTT+TGG - Chr4:57023872-57023891 MsG0480021356.01.T01:intron 40.0%
CATAGATACAACCATATCCC+TGG - Chr4:57025321-57025340 MsG0480021356.01.T01:intron 40.0%
CATGAAAACCATGCTAAACC+TGG - Chr4:57028884-57028903 MsG0480021356.01.T01:CDS 40.0%
CATTCACATGGATGACCAAA+TGG + Chr4:57026899-57026918 None:intergenic 40.0%
CCAAACTTGATAGGTTCATG+AGG - Chr4:57025551-57025570 MsG0480021356.01.T01:intron 40.0%
CCTCATGAACCTATCAAGTT+TGG + Chr4:57025554-57025573 None:intergenic 40.0%
CTCAAATGAGCTACAATGGA+TGG + Chr4:57026738-57026757 None:intergenic 40.0%
GAGATTGAAAGAGAACTTCC+AGG - Chr4:57026483-57026502 MsG0480021356.01.T01:intron 40.0%
GCAGCAAACAAAGAATGGTT+TGG - Chr4:57026203-57026222 MsG0480021356.01.T01:CDS 40.0%
GGATTCAAGATGCCAATCAT+TGG - Chr4:57023859-57023878 MsG0480021356.01.T01:intron 40.0%
GTATCAACCAAGCATTCACA+TGG + Chr4:57026911-57026930 None:intergenic 40.0%
GTGCATATGCAGGAATTGTA+GGG + Chr4:57025624-57025643 None:intergenic 40.0%
GTTTGGTACAGAGTCATGTT+TGG - Chr4:57026220-57026239 MsG0480021356.01.T01:CDS 40.0%
TCAACTGATTGGGTACTAAC+TGG - Chr4:57027117-57027136 MsG0480021356.01.T01:intron 40.0%
TCAAGTCGGTCCAAAACATA+AGG + Chr4:57028299-57028318 None:intergenic 40.0%
TGAGTTGTCTAAAGAGGACA+TGG - Chr4:57026516-57026535 MsG0480021356.01.T01:intron 40.0%
TGCACCTCCCTCAAAAAAAA+AGG - Chr4:57028002-57028021 MsG0480021356.01.T01:intron 40.0%
TTTCTTCACCAGGTTTAGCA+TGG + Chr4:57028895-57028914 None:intergenic 40.0%
! AGTGTTGCGACTTTGATTTC+AGG - Chr4:57026363-57026382 MsG0480021356.01.T01:CDS 40.0%
! ATAGTGCTTTGGGTGAAGAT+GGG - Chr4:57025290-57025309 MsG0480021356.01.T01:intron 40.0%
! ATGCAAGACATTTTGTGTGC+TGG - Chr4:57025783-57025802 MsG0480021356.01.T01:intron 40.0%
! ATTGGGTACTAACTGGTTTC+TGG - Chr4:57027124-57027143 MsG0480021356.01.T01:intron 40.0%
! GGATCTTTTCATTACCACCA+AGG - Chr4:57024127-57024146 MsG0480021356.01.T01:intron 40.0%
! GGTACTACTGATAGTGCTTT+GGG - Chr4:57025280-57025299 MsG0480021356.01.T01:intron 40.0%
! GTGTTGCGACTTTGATTTCA+GGG - Chr4:57026364-57026383 MsG0480021356.01.T01:CDS 40.0%
! TAATCAACCGGCCAAGTTTT+GGG - Chr4:57026573-57026592 MsG0480021356.01.T01:CDS 40.0%
! TGGTACTACTGATAGTGCTT+TGG - Chr4:57025279-57025298 MsG0480021356.01.T01:intron 40.0%
! TTTCTCCAAGTTCTGATTGG+GGG - Chr4:57027651-57027670 MsG0480021356.01.T01:intron 40.0%
!! CAGCTTTGGAATTCTGATCA+TGG - Chr4:57024412-57024431 MsG0480021356.01.T01:intron 40.0%
!! CCAAAAGATTTGATAACGGC+GGG + Chr4:57026805-57026824 None:intergenic 40.0%
!! CTCTTTACAAGGGTGTTTGT+AGG - Chr4:57025039-57025058 MsG0480021356.01.T01:intron 40.0%
!!! CAAGTTGGTCCCTTATGTTT+TGG - Chr4:57028224-57028243 MsG0480021356.01.T01:intron 40.0%
!!! CTAACTGGTTTCTGGAGTTT+TGG - Chr4:57027132-57027151 MsG0480021356.01.T01:intron 40.0%
!!! CTGGCTACTTTTTGCTTTTG+TGG + Chr4:57028959-57028978 None:intergenic 40.0%
!!! TTGTTTTTGTTCGGAACAGG+TGG + Chr4:57028817-57028836 None:intergenic 40.0%
AAACATACCAGTGTGCCTAG+TGG + Chr4:57024521-57024540 None:intergenic 45.0%
ACTAGGCACACTGGTATGTT+TGG - Chr4:57024520-57024539 MsG0480021356.01.T01:intron 45.0%
AGACTCCGTAATCTGAGAGT+TGG - Chr4:57027973-57027992 MsG0480021356.01.T01:intron 45.0%
AGATGTTTCAGATGGGGGAT+GGG + Chr4:57025021-57025040 None:intergenic 45.0%
ATGACCAAATGGACGAGGAT+GGG + Chr4:57026888-57026907 None:intergenic 45.0%
ATGGCAATCACACTGAACAG+CGG - Chr4:57023838-57023857 MsG0480021356.01.T01:three_prime_UTR 45.0%
CACATTTCTCACACATGCAG+GGG - Chr4:57025255-57025274 MsG0480021356.01.T01:intron 45.0%
CACTGGACTTGTGAAAAGAG+AGG - Chr4:57024106-57024125 MsG0480021356.01.T01:intron 45.0%
CCACATTTCTCACACATGCA+GGG - Chr4:57025254-57025273 MsG0480021356.01.T01:intron 45.0%
CGAGGATGGGAGTAAACAAA+TGG + Chr4:57026875-57026894 None:intergenic 45.0%
CGTGCATATGCAGGAATTGT+AGG + Chr4:57025625-57025644 None:intergenic 45.0%
GACTCCGTAATCTGAGAGTT+GGG - Chr4:57027974-57027993 MsG0480021356.01.T01:intron 45.0%
GTGCTGCAGCAAACAAAGAA+TGG - Chr4:57026198-57026217 MsG0480021356.01.T01:CDS 45.0%
TCTTGAGACCAAGAGATGTG+AGG + Chr4:57027628-57027647 None:intergenic 45.0%
TGCCCAGATTTCTCTTCGTT+GGG - Chr4:57026414-57026433 MsG0480021356.01.T01:intron 45.0%
TGGTCATCCATGTGAATGCT+TGG - Chr4:57026901-57026920 MsG0480021356.01.T01:intron 45.0%
TTCACTTTCCTGTAGCCACT+AGG - Chr4:57024503-57024522 MsG0480021356.01.T01:intron 45.0%
! AATCAACCGGCCAAGTTTTG+GGG - Chr4:57026574-57026593 MsG0480021356.01.T01:CDS 45.0%
! CCCGCCGTTATCAAATCTTT+TGG - Chr4:57026802-57026821 MsG0480021356.01.T01:intron 45.0%
! CTAATCAACCGGCCAAGTTT+TGG - Chr4:57026572-57026591 MsG0480021356.01.T01:CDS 45.0%
! GATAGTGCTTTGGGTGAAGA+TGG - Chr4:57025289-57025308 MsG0480021356.01.T01:intron 45.0%
! GTGACTTCTAGAAGTTGCTC+TGG - Chr4:57025439-57025458 MsG0480021356.01.T01:intron 45.0%
! TAGTGCTTTGGGTGAAGATG+GGG - Chr4:57025291-57025310 MsG0480021356.01.T01:intron 45.0%
!! ATGGAAGGCCTTGTTTCATC+GGG - Chr4:57025361-57025380 MsG0480021356.01.T01:intron 45.0%
!! GATGGAAGGCCTTGTTTCAT+CGG - Chr4:57025360-57025379 MsG0480021356.01.T01:intron 45.0%
!! TATAATGGGGTAGTGGAGAG+TGG - Chr4:57024812-57024831 MsG0480021356.01.T01:intron 45.0%
AGAGATGTTCAGATGGGGGA+CGG + Chr4:57025127-57025146 None:intergenic 50.0%
AGCTCATCAACGGTATGGAC+AGG - Chr4:57026539-57026558 MsG0480021356.01.T01:intron 50.0%
ATGTTTCAGATGGGGGATGG+GGG + Chr4:57025019-57025038 None:intergenic 50.0%
ATTTGACAAGAGACTCGCGC+TGG + Chr4:57026130-57026149 None:intergenic 50.0%
CACTCCTACCTCACATCTCT+TGG - Chr4:57027617-57027636 MsG0480021356.01.T01:intron 50.0%
CAGCCGTAGAAACACATAGC+TGG + Chr4:57028779-57028798 None:intergenic 50.0%
CAGTTTACCGCCTACCCTAA+TGG - Chr4:57025844-57025863 MsG0480021356.01.T01:intron 50.0%
CATGGAGCTCATCAACGGTA+TGG - Chr4:57026534-57026553 MsG0480021356.01.T01:intron 50.0%
CATGGATGACCAAATGGACG+AGG + Chr4:57026893-57026912 None:intergenic 50.0%
CATTAGGGTAGGCGGTAAAC+TGG + Chr4:57025846-57025865 None:intergenic 50.0%
CCAGGTAGTTTCCAGGGATA+TGG + Chr4:57025335-57025354 None:intergenic 50.0%
CCATATCCCTGGAAACTACC+TGG - Chr4:57025332-57025351 MsG0480021356.01.T01:intron 50.0%
CCCAGATTTCTCTTCGTTGG+GGG - Chr4:57026416-57026435 MsG0480021356.01.T01:intron 50.0%
CCCCCAACGAAGAGAAATCT+GGG + Chr4:57026419-57026438 None:intergenic 50.0%
CCCTGCATGTGTGAGAAATG+TGG + Chr4:57025257-57025276 None:intergenic 50.0%
CTCTTCGTTGGGGGATTCAA+AGG - Chr4:57026425-57026444 MsG0480021356.01.T01:intron 50.0%
CTGCCCAGATTTCTCTTCGT+TGG - Chr4:57026413-57026432 MsG0480021356.01.T01:intron 50.0%
GAACCAAGCCCGATGAAACA+AGG + Chr4:57025372-57025391 None:intergenic 50.0%
GAGACCAAGAGATGTGAGGT+AGG + Chr4:57027624-57027643 None:intergenic 50.0%
GAGATGTTTCAGATGGGGGA+TGG + Chr4:57025022-57025041 None:intergenic 50.0%
GAGGACATGGAGCTCATCAA+CGG - Chr4:57026529-57026548 MsG0480021356.01.T01:intron 50.0%
GATGACCAAATGGACGAGGA+TGG + Chr4:57026889-57026908 None:intergenic 50.0%
GATGTTTCAGATGGGGGATG+GGG + Chr4:57025020-57025039 None:intergenic 50.0%
GCCACATTTCTCACACATGC+AGG - Chr4:57025253-57025272 MsG0480021356.01.T01:intron 50.0%
GCCCAGATTTCTCTTCGTTG+GGG - Chr4:57026415-57026434 MsG0480021356.01.T01:intron 50.0%
GTAAGCCCCCAATCAGAACT+TGG + Chr4:57027659-57027678 None:intergenic 50.0%
TACGGCTGCAAATGCCAGAT+TGG - Chr4:57028791-57028810 MsG0480021356.01.T01:intron 50.0%
TACTCCCATCCTCGTCCATT+TGG - Chr4:57026881-57026900 MsG0480021356.01.T01:intron 50.0%
TCCCCCAACGAAGAGAAATC+TGG + Chr4:57026420-57026439 None:intergenic 50.0%
TCTATGCCCCAAAACTTGGC+CGG + Chr4:57026583-57026602 None:intergenic 50.0%
TGAAACTTCAGGTCCTGCCT+TGG - Chr4:57027020-57027039 MsG0480021356.01.T01:intron 50.0%
TGATCATGGACACGTTGTCG+AGG - Chr4:57024426-57024445 MsG0480021356.01.T01:intron 50.0%
TGATTGGGGGCTTACTTCAC+TGG - Chr4:57027664-57027683 MsG0480021356.01.T01:intron 50.0%
TGGTTCGCAGCATAGGAATC+AGG - Chr4:57025386-57025405 MsG0480021356.01.T01:intron 50.0%
TTTCTCACACATGCAGGGGT+TGG - Chr4:57025259-57025278 MsG0480021356.01.T01:intron 50.0%
ACTACCTGGCATGCGATGGA+AGG - Chr4:57025346-57025365 MsG0480021356.01.T01:intron 55.0%
AGAGACTCGCGCTGGAAGTA+TGG + Chr4:57026122-57026141 None:intergenic 55.0%
AGCACCTCCAAGTGGAGTGT+GGG + Chr4:57026183-57026202 None:intergenic 55.0%
AGCAGCTATTGGCCACGACA+GGG + Chr4:57025072-57025091 None:intergenic 55.0%
CGCATGCCAGGTAGTTTCCA+GGG + Chr4:57025341-57025360 None:intergenic 55.0%
CTTGGAGTTTGGCGCATGGA+AGG - Chr4:57023883-57023902 MsG0480021356.01.T01:intron 55.0%
GAGATGTTCAGATGGGGGAC+GGG + Chr4:57025126-57025145 None:intergenic 55.0%
GGAAACTACCTGGCATGCGA+TGG - Chr4:57025342-57025361 MsG0480021356.01.T01:intron 55.0%
GGCAATCGCTGGGGGATTTA+AGG + Chr4:57025105-57025124 None:intergenic 55.0%
GTAACAGCCCACACTCCACT+TGG - Chr4:57026173-57026192 MsG0480021356.01.T01:three_prime_UTR 55.0%
TAGCAGCTATTGGCCACGAC+AGG + Chr4:57025073-57025092 None:intergenic 55.0%
TCGCATGCCAGGTAGTTTCC+AGG + Chr4:57025342-57025361 None:intergenic 55.0%
TGGACTTGGAGTTTGGCGCA+TGG - Chr4:57023879-57023898 MsG0480021356.01.T01:intron 55.0%
TTCGGAACAGGTGGCCAATC+TGG + Chr4:57028808-57028827 None:intergenic 55.0%
TTTGCTGCAGCACCTCCAAG+TGG + Chr4:57026191-57026210 None:intergenic 55.0%
TTTGGGTGAAGATGGGGTGC+TGG - Chr4:57025297-57025316 MsG0480021356.01.T01:intron 55.0%
!! AGGCCTTGTTTCATCGGGCT+TGG - Chr4:57025366-57025385 MsG0480021356.01.T01:intron 55.0%
AAGGCCTTCCATCGCATGCC+AGG + Chr4:57025353-57025372 None:intergenic 60.0%
ACAGCCCACACTCCACTTGG+AGG - Chr4:57026176-57026195 MsG0480021356.01.T01:exon 60.0%
CAGCACCTCCAAGTGGAGTG+TGG + Chr4:57026184-57026203 None:intergenic 60.0%
CCAGTGTGCCTAGTGGCTAC+AGG + Chr4:57024514-57024533 None:intergenic 60.0%
CCTGTAGCCACTAGGCACAC+TGG - Chr4:57024511-57024530 MsG0480021356.01.T01:intron 60.0%
CTATTGGCCACGACAGGGGA+GGG + Chr4:57025067-57025086 None:intergenic 60.0%
GCAGCTATTGGCCACGACAG+GGG + Chr4:57025071-57025090 None:intergenic 60.0%
! TCGGGCTTGGTTCGCAGCAT+AGG - Chr4:57025379-57025398 MsG0480021356.01.T01:intron 60.0%
!! ATGGGGGATGGGGGTACTTC+GGG + Chr4:57025010-57025029 None:intergenic 60.0%
!! GATGGGGGATGGGGGTACTT+CGG + Chr4:57025011-57025030 None:intergenic 60.0%
ATGGGGGACGGGCAATCGCT+GGG + Chr4:57025115-57025134 None:intergenic 65.0%
GCTATTGGCCACGACAGGGG+AGG + Chr4:57025068-57025087 None:intergenic 65.0%
!! TGGGGGATGGGGGTACTTCG+GGG + Chr4:57025009-57025028 None:intergenic 65.0%
GATGGGGGACGGGCAATCGC+TGG + Chr4:57025116-57025135 None:intergenic 70.0%
GTAGGGTCCCTCCCCTGTCG+TGG - Chr4:57025057-57025076 MsG0480021356.01.T01:intron 70.0%
TGGGGGACGGGCAATCGCTG+GGG + Chr4:57025114-57025133 None:intergenic 70.0%
GGGGGACGGGCAATCGCTGG+GGG + Chr4:57025113-57025132 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 57023813 57028997 57023813 ID=MsG0480021356.01;Name=MsG0480021356.01
Chr4 mRNA 57023813 57028997 57023813 ID=MsG0480021356.01.T01;Parent=MsG0480021356.01;Name=MsG0480021356.01.T01;_AED=0.49;_eAED=0.49;_QI=25|1|1|1|0.83|0.71|7|274|309
Chr4 exon 57023813 57023872 57023813 ID=MsG0480021356.01.T01:exon:19205;Parent=MsG0480021356.01.T01
Chr4 exon 57025981 57026425 57025981 ID=MsG0480021356.01.T01:exon:19204;Parent=MsG0480021356.01.T01
Chr4 exon 57026551 57026770 57026551 ID=MsG0480021356.01.T01:exon:19203;Parent=MsG0480021356.01.T01
Chr4 exon 57027403 57027535 57027403 ID=MsG0480021356.01.T01:exon:19202;Parent=MsG0480021356.01.T01
Chr4 exon 57028278 57028395 57028278 ID=MsG0480021356.01.T01:exon:19201;Parent=MsG0480021356.01.T01
Chr4 exon 57028662 57028756 57028662 ID=MsG0480021356.01.T01:exon:19200;Parent=MsG0480021356.01.T01
Chr4 exon 57028840 57028997 57028840 ID=MsG0480021356.01.T01:exon:19199;Parent=MsG0480021356.01.T01
Chr4 five_prime_UTR 57028973 57028997 57028973 ID=MsG0480021356.01.T01:five_prime_utr;Parent=MsG0480021356.01.T01
Chr4 CDS 57028840 57028972 57028840 ID=MsG0480021356.01.T01:cds;Parent=MsG0480021356.01.T01
Chr4 CDS 57028662 57028756 57028662 ID=MsG0480021356.01.T01:cds;Parent=MsG0480021356.01.T01
Chr4 CDS 57028278 57028395 57028278 ID=MsG0480021356.01.T01:cds;Parent=MsG0480021356.01.T01
Chr4 CDS 57027403 57027535 57027403 ID=MsG0480021356.01.T01:cds;Parent=MsG0480021356.01.T01
Chr4 CDS 57026551 57026770 57026551 ID=MsG0480021356.01.T01:cds;Parent=MsG0480021356.01.T01
Chr4 CDS 57026195 57026425 57026195 ID=MsG0480021356.01.T01:cds;Parent=MsG0480021356.01.T01
Chr4 three_prime_UTR 57025981 57026194 57025981 ID=MsG0480021356.01.T01:three_prime_utr;Parent=MsG0480021356.01.T01
Chr4 three_prime_UTR 57023813 57023872 57023813 ID=MsG0480021356.01.T01:three_prime_utr;Parent=MsG0480021356.01.T01
Gene Sequence

>MsG0480021356.01.T01

ATGGCAATCACACTGAACAGCGGATTCAAGATGCCAATCATTGGACTTGGAGTTTGGCGCATGGAAGGACAAGCCATCAAAGACCTAATCATCAATTCCATCAAAATCGGTTATCGTCATTTTGATTGTGCTGCTGACTACAAAAACGAAGCAGAAGTTGGAGAAGCGCTTAAAGAAGCTTTTGACACTGGACTTGTGAAAAGAGAGGATCTTTTCATTACCACCAAGCTTTGGAATTCTGATCATGGACACGTTGTCGAGGCTTGCAAAGATAGTCTTAAGAAGCTTCAGTTAGATTATCTGGATTTATATCTTGTTCACTTTCCTGTAGCCACTAGGCACACTGGGGTTGGTACTACTGATAGTGCTTTGGGTGAAGATGGGGTGCTGGACATAGATACAACCATATCCCTGGAAACTACCTGGCATGCGATGGAAGGCCTTGTTTCATCGGGCTTGGTTCGCAGCATAGGAATCAGCAACTATGACATCTTTCTGACTAGAGATTGCTTAGCATATTCCAAGATAAAGCCTGCTGTAAATCAGATTGAAACTCATCCATACTTCCAGCGCGAGTCTCTTGTCAAATTTTGTCAGAAGCATGGAATTTGTGTAACAGCCCACACTCCACTTGGAGGTGCTGCAGCAAACAAAGAATGGTTTGGTACAGAGTCATGTTTGGATGAGCAAACTCTCAAAGGTCTAGCTGAAAAATACAAAAAGACTGCTGCCCAGATTTCTCTTCGTTGGGGGATTCAAAGGAACACTGTTGTCATTCCTAAAACATCAAAACTGGAGAGATTGAAAGAGAACTTCCAGGTATTTGATTTTGAGTTGTCTAAAGAGGACATGGAGCTCATCAACGGTATGGACAGGAAATATCGAACTAATCAACCGGCCAAGTTTTGGGGCATAGATCTTTATGCATGA

Protein sequence

>MsG0480021356.01.T01

MAITLNSGFKMPIIGLGVWRMEGQAIKDLIINSIKIGYRHFDCAADYKNEAEVGEALKEAFDTGLVKREDLFITTKLWNSDHGHVVEACKDSLKKLQLDYLDLYLVHFPVATRHTGVGTTDSALGEDGVLDIDTTISLETTWHAMEGLVSSGLVRSIGISNYDIFLTRDCLAYSKIKPAVNQIETHPYFQRESLVKFCQKHGICVTAHTPLGGAAANKEWFGTESCLDEQTLKGLAEKYKKTAAQISLRWGIQRNTVVIPKTSKLERLKENFQVFDFELSKEDMELINGMDRKYRTNQPAKFWGIDLYA*