AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004811.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004811.01.T01 MTR_1g087370 100.000 136 0 0 1 136 1 136 6.57e-100 282
MsG0180004811.01.T01 MTR_1g087370 95.876 97 4 0 1 97 1 97 3.15e-65 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004811.01.T01 AT1G02680 69.091 110 30 1 15 124 19 124 1.37e-52 162

Find 38 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATAAGTGCCACACTTTC+AGG 0.177767 1:-83055826 None:intergenic
TCCTGAAAGTGTGGCACTTA+TGG 0.274135 1:+83055825 MsG0180004811.01.T01:CDS
TTGTTTCAGCTCTTCATTCA+TGG 0.321730 1:-83057802 None:intergenic
GTACATAAAGCACAAGATAT+TGG 0.348377 1:+83055970 MsG0180004811.01.T01:CDS
AACACAAATTCAAACATTGC+TGG 0.365787 1:-83058056 None:intergenic
CTCTCGCCACCGTTTCTTCG+AGG 0.371758 1:+83054723 MsG0180004811.01.T01:five_prime_UTR
AGAGCAGCTTTATTTGATCT+TGG 0.392934 1:+83057990 MsG0180004811.01.T01:three_prime_UTR
TCTGTACAACGGTTAAGTTT+TGG 0.401058 1:-83057771 None:intergenic
AAAGAAAGAAAGAAAGAAAG+AGG 0.409082 1:+83054692 MsG0180004811.01.T01:five_prime_UTR
GAAAACTCCTCTTCTGCGCT+TGG 0.409109 1:-83055557 None:intergenic
GCAGAATTGCTCATTGTTGT+TGG 0.451929 1:-83055478 None:intergenic
TCAACCATTCATCCTTCTGC+TGG 0.456641 1:-83057885 None:intergenic
ATAGTGCAGCACATGATGTA+TGG 0.483674 1:+83055669 MsG0180004811.01.T01:intron
TGTAGAATATATAACAGAAC+TGG 0.487631 1:+83055858 MsG0180004811.01.T01:CDS
CAGCACATGATGTATGGCTT+CGG 0.502212 1:+83055675 MsG0180004811.01.T01:CDS
ATCTTCTTACCTCGAAGAAA+CGG 0.509193 1:-83054732 None:intergenic
CTGCGCTTGGATGAAGTATC+CGG 0.543383 1:-83055544 None:intergenic
GTACCTTGCGAATCAAATAG+AGG 0.544458 1:-83056026 None:intergenic
AGTGCCACACTTTCAGGAAG+TGG 0.547849 1:-83055820 None:intergenic
AGCAGCTTCCTCACAACCGC+CGG 0.558420 1:+83055525 MsG0180004811.01.T01:CDS
ACAATGAGCAATTCTGCTGC+CGG 0.562228 1:+83055484 MsG0180004811.01.T01:exon
ACTTCATCCAAGCGCAGAAG+AGG 0.574154 1:+83055550 MsG0180004811.01.T01:CDS
ACAAGATATTGGATCACAGA+GGG 0.592434 1:+83055981 MsG0180004811.01.T01:CDS
TGAACCAGCAGAAGGATGAA+TGG 0.594825 1:+83057881 MsG0180004811.01.T01:exon
TGAAGTATCCGGCGGTTGTG+AGG 0.595509 1:-83055533 None:intergenic
GAGGTGGATGAACCAGCAGA+AGG 0.597040 1:+83057873 MsG0180004811.01.T01:CDS
TTTCCTCTATTTGATTCGCA+AGG 0.600469 1:+83056023 MsG0180004811.01.T01:CDS
TGATGAAGAAAATCTGAGGA+AGG 0.607837 1:+83057845 MsG0180004811.01.T01:CDS
AACATGATGAAGAAAATCTG+AGG 0.614216 1:+83057841 MsG0180004811.01.T01:CDS
CACAAGATATTGGATCACAG+AGG 0.626166 1:+83055980 MsG0180004811.01.T01:CDS
ATGAAGAGCTGAAACAAGCA+AGG 0.629320 1:+83057808 MsG0180004811.01.T01:CDS
TTAGCCACTTCCTGAAAGTG+TGG 0.629862 1:+83055816 MsG0180004811.01.T01:intron
ACACATCATCTACGCGAACG+TGG 0.655182 1:+83054666 MsG0180004811.01.T01:five_prime_UTR
TTCTTACCTCGAAGAAACGG+TGG 0.669195 1:-83054729 None:intergenic
TGGACAACAGTTCTGTACAA+CGG 0.671566 1:-83057782 None:intergenic
AAGATATTGGATCACAGAGG+GGG 0.677224 1:+83055983 MsG0180004811.01.T01:CDS
CGCTTGGATGAAGTATCCGG+CGG 0.690618 1:-83055541 None:intergenic
CAAGATATTGGATCACAGAG+GGG 0.705641 1:+83055982 MsG0180004811.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATATTTGCGTA+AGG - Chr1:83055944-83055963 None:intergenic 15.0%
!! ATGCTAAAATTTAAAAACTT+AGG - Chr1:83055608-83055627 None:intergenic 15.0%
!! CAATAAGTATAATATTCTTA+TGG - Chr1:83056468-83056487 None:intergenic 15.0%
!! TATATAATCTTAGTATCTTA+TGG - Chr1:83057425-83057444 None:intergenic 15.0%
!!! AATAGTTTAAAGTTAATAGT+TGG + Chr1:83056776-83056795 MsG0180004811.01.T01:intron 15.0%
!!! ATAGTTTAAAGTTAATAGTT+GGG + Chr1:83056777-83056796 MsG0180004811.01.T01:intron 15.0%
!!! CAAATATTTTTTTTTTGTCA+AGG + Chr1:83055948-83055967 MsG0180004811.01.T01:intron 15.0%
!! AAAAATTCTTACATTCTCTT+TGG - Chr1:83055582-83055601 None:intergenic 20.0%
!! AAACAAGAAAACAAAACAAA+AGG - Chr1:83055024-83055043 None:intergenic 20.0%
!! AACAAGAAAACAAAACAAAA+GGG - Chr1:83055023-83055042 None:intergenic 20.0%
!! AATAAGGTTAATATCTGAAT+TGG + Chr1:83055081-83055100 MsG0180004811.01.T01:intron 20.0%
!! TAAAATATCAAGATTGATTG+TGG - Chr1:83057712-83057731 None:intergenic 20.0%
!! TAACTTTAAACTATTATTGC+AGG - Chr1:83056771-83056790 None:intergenic 20.0%
!! TACAATTCTGTAAAACTAAT+GGG + Chr1:83054982-83055001 MsG0180004811.01.T01:intron 20.0%
!! TATTCATTAGCAATGAATAT+GGG + Chr1:83057095-83057114 MsG0180004811.01.T01:intron 20.0%
!! TTACAATTCTGTAAAACTAA+TGG + Chr1:83054981-83055000 MsG0180004811.01.T01:intron 20.0%
!! TTATTCATTAGCAATGAATA+TGG + Chr1:83057094-83057113 MsG0180004811.01.T01:intron 20.0%
!!! ATTTCTCTTTTAATACATGT+TGG - Chr1:83056195-83056214 None:intergenic 20.0%
!!! ATTTTAGTAACTATAGTTAG+AGG - Chr1:83055441-83055460 None:intergenic 20.0%
!!! ATTTTTATACGAGTCTTTAT+AGG + Chr1:83056841-83056860 MsG0180004811.01.T01:intron 20.0%
!!! TTTCTCTTTTAATACATGTT+GGG - Chr1:83056194-83056213 None:intergenic 20.0%
!!! TTTTCGTATTGAGTTATTAT+GGG - Chr1:83054881-83054900 None:intergenic 20.0%
! AAAGAAAGAAAGAAAGAAAG+AGG + Chr1:83054692-83054711 MsG0180004811.01.T01:five_prime_UTR 25.0%
! AAAGTTGCAAATATAGATCT+TGG + Chr1:83056062-83056081 MsG0180004811.01.T01:intron 25.0%
! AACTTATCTACTCCTATTAA+AGG + Chr1:83057641-83057660 MsG0180004811.01.T01:intron 25.0%
! AAGTTGCAAATATAGATCTT+GGG + Chr1:83056063-83056082 MsG0180004811.01.T01:intron 25.0%
! AATAACTCAATACGAAAACA+GGG + Chr1:83054883-83054902 MsG0180004811.01.T01:intron 25.0%
! ACAAGAAAACAAAACAAAAG+GGG - Chr1:83055022-83055041 None:intergenic 25.0%
! ACAATTCTGTAAAACTAATG+GGG + Chr1:83054983-83055002 MsG0180004811.01.T01:intron 25.0%
! ACTTATCTACTCCTATTAAA+GGG + Chr1:83057642-83057661 MsG0180004811.01.T01:intron 25.0%
! AGAACAATAATTGAAGATGA+TGG + Chr1:83054938-83054957 MsG0180004811.01.T01:intron 25.0%
! ATCTTAAATTTGATTGACCA+TGG + Chr1:83057181-83057200 MsG0180004811.01.T01:intron 25.0%
! CTTATCATTGATCAAACTTT+GGG + Chr1:83057345-83057364 MsG0180004811.01.T01:intron 25.0%
! GACTCGTATAAAAATTGAAT+TGG - Chr1:83056836-83056855 None:intergenic 25.0%
! GATAGAATGAGAATTACATT+AGG - Chr1:83055708-83055727 None:intergenic 25.0%
! GGGTAATAAAAAAATTCACA+TGG - Chr1:83056170-83056189 None:intergenic 25.0%
! GGTAATAAGTTCTCAAATTA+GGG + Chr1:83054904-83054923 MsG0180004811.01.T01:intron 25.0%
! TAATAACTCAATACGAAAAC+AGG + Chr1:83054882-83054901 MsG0180004811.01.T01:intron 25.0%
! TAATATTCTTATGGTGTGTT+TGG - Chr1:83056459-83056478 None:intergenic 25.0%
! TATTTATCTTCAAATACTGC+TGG + Chr1:83056099-83056118 MsG0180004811.01.T01:intron 25.0%
! TCTTATCATTGATCAAACTT+TGG + Chr1:83057344-83057363 MsG0180004811.01.T01:intron 25.0%
! TGAAGACCATATATTCATAA+AGG - Chr1:83056561-83056580 None:intergenic 25.0%
! TGTAGAATATATAACAGAAC+TGG + Chr1:83055858-83055877 MsG0180004811.01.T01:CDS 25.0%
! TTCAGATATTAACCTTATTG+AGG - Chr1:83055080-83055099 None:intergenic 25.0%
!! AGAAATTTTGCAAACATAGT+AGG - Chr1:83055743-83055762 None:intergenic 25.0%
!! GTTTTCGTATTGAGTTATTA+TGG - Chr1:83054882-83054901 None:intergenic 25.0%
!! TTTTTGCTTATATTAGTGAC+CGG + Chr1:83056728-83056747 MsG0180004811.01.T01:intron 25.0%
!!! AATGAAGGTTATTTTACTGT+TGG + Chr1:83057580-83057599 MsG0180004811.01.T01:intron 25.0%
AAATATTTGCGTAAGGACAA+AGG - Chr1:83055937-83055956 None:intergenic 30.0%
AACACAAATTCAAACATTGC+TGG - Chr1:83058059-83058078 None:intergenic 30.0%
AACATGATGAAGAAAATCTG+AGG + Chr1:83057841-83057860 MsG0180004811.01.T01:CDS 30.0%
AAGTTATATCTCAGAATTCC+TGG - Chr1:83057531-83057550 None:intergenic 30.0%
AGTTGCAAATATAGATCTTG+GGG + Chr1:83056064-83056083 MsG0180004811.01.T01:intron 30.0%
ATATCAAGATTGATTGTGGT+CGG - Chr1:83057708-83057727 None:intergenic 30.0%
CTCAACAAAAATGTACAATC+AGG - Chr1:83057259-83057278 None:intergenic 30.0%
CTTCAACAATGAACAAAACA+GGG - Chr1:83054844-83054863 None:intergenic 30.0%
GGGTAATAAGTTCTCAAATT+AGG + Chr1:83054903-83054922 MsG0180004811.01.T01:intron 30.0%
GTACATAAAGCACAAGATAT+TGG + Chr1:83055970-83055989 MsG0180004811.01.T01:CDS 30.0%
TAACTATAGTTAGAGGAAAG+AGG - Chr1:83055434-83055453 None:intergenic 30.0%
TAATGTATCTGTCAAATCTG+AGG + Chr1:83057005-83057024 MsG0180004811.01.T01:intron 30.0%
TTAAACTTGGATCCAAACAT+TGG - Chr1:83056334-83056353 None:intergenic 30.0%
TTAGCTAGAAATATCACTTC+TGG + Chr1:83056531-83056550 MsG0180004811.01.T01:intron 30.0%
TTATGCTGTACATATATCTC+TGG + Chr1:83057232-83057251 MsG0180004811.01.T01:intron 30.0%
TTTGTCAAAATGCCTCAATA+AGG + Chr1:83055065-83055084 MsG0180004811.01.T01:intron 30.0%
! CAAATTTAAGATGAGGAAGT+TGG - Chr1:83057173-83057192 None:intergenic 30.0%
! GGTCAATCAAATTTAAGATG+AGG - Chr1:83057180-83057199 None:intergenic 30.0%
! TCTTTTAATACATGTTGGGA+GGG - Chr1:83056190-83056209 None:intergenic 30.0%
!! AAATTTTGCTGTGTAATGCT+AGG + Chr1:83054807-83054826 MsG0180004811.01.T01:intron 30.0%
AAGCTTCTATAAGCCAAAGT+CGG + Chr1:83056902-83056921 MsG0180004811.01.T01:intron 35.0%
ACAAGATATTGGATCACAGA+GGG + Chr1:83055981-83056000 MsG0180004811.01.T01:CDS 35.0%
ACAGCATAATTATGCATGAG+TGG - Chr1:83057221-83057240 None:intergenic 35.0%
ACGAATGAAAGAAAGAAGTG+TGG - Chr1:83054763-83054782 None:intergenic 35.0%
ACTATAAAGCCTATGGAAGA+AGG - Chr1:83057292-83057311 None:intergenic 35.0%
AGAAACCAACGAAGAAGATT+AGG - Chr1:83055649-83055668 None:intergenic 35.0%
AGTTGTTAGCTGTTAGTTAC+TGG + Chr1:83056801-83056820 MsG0180004811.01.T01:intron 35.0%
ATCTTCTTACCTCGAAGAAA+CGG - Chr1:83054735-83054754 None:intergenic 35.0%
ATGCACATGCACTAAAATGA+AGG + Chr1:83057565-83057584 MsG0180004811.01.T01:intron 35.0%
CCAAAGAGTTGAGTGATTTA+AGG - Chr1:83057049-83057068 None:intergenic 35.0%
CCTTAAATCACTCAACTCTT+TGG + Chr1:83057046-83057065 MsG0180004811.01.T01:intron 35.0%
CGAGAATATGGACTTAAACT+TGG - Chr1:83056347-83056366 None:intergenic 35.0%
CTATAAAGCCTATGGAAGAA+GGG - Chr1:83057291-83057310 None:intergenic 35.0%
GCTGTTGTCATTATTCTCAA+GGG + Chr1:83056142-83056161 MsG0180004811.01.T01:intron 35.0%
GCTTCAACAATGAACAAAAC+AGG - Chr1:83054845-83054864 None:intergenic 35.0%
GGTCTGCCTTTATGAATATA+TGG + Chr1:83056552-83056571 MsG0180004811.01.T01:intron 35.0%
GGTCTTCAATTGCTCATTAT+TGG + Chr1:83056573-83056592 MsG0180004811.01.T01:intron 35.0%
GTACCATACAATTACCTTGT+TGG - Chr1:83057073-83057092 None:intergenic 35.0%
GTTTAACATGTTTGTTCGCA+AGG + Chr1:83055040-83055059 MsG0180004811.01.T01:intron 35.0%
TAAGCCAAAGTCGGTATTAA+TGG + Chr1:83056911-83056930 MsG0180004811.01.T01:intron 35.0%
TAGTCCTAAATAACCTGCAT+TGG + Chr1:83056965-83056984 MsG0180004811.01.T01:intron 35.0%
TATAAAGCCTATGGAAGAAG+GGG - Chr1:83057290-83057309 None:intergenic 35.0%
TCCTAGAACTATAAAGCCTA+TGG - Chr1:83057299-83057318 None:intergenic 35.0%
TCTCAAATTAGGGCTTGATT+TGG + Chr1:83054914-83054933 MsG0180004811.01.T01:intron 35.0%
TCTTCAAATACTGCTGGAAA+TGG + Chr1:83056105-83056124 MsG0180004811.01.T01:intron 35.0%
TGAACCAATGCAGGTTATTT+AGG - Chr1:83056972-83056991 None:intergenic 35.0%
TGATGAAGAAAATCTGAGGA+AGG + Chr1:83057845-83057864 MsG0180004811.01.T01:CDS 35.0%
TGCTGTTGTCATTATTCTCA+AGG + Chr1:83056141-83056160 MsG0180004811.01.T01:intron 35.0%
TTAAATGCTACCTCCTGAAT+CGG - Chr1:83057668-83057687 None:intergenic 35.0%
TTGTTTCAGCTCTTCATTCA+TGG - Chr1:83057805-83057824 None:intergenic 35.0%
TTTGTAGCTTCATACAACCA+CGG - Chr1:83056388-83056407 None:intergenic 35.0%
! AAATCTGAGGAAGGTTTTTG+AGG + Chr1:83057854-83057873 MsG0180004811.01.T01:CDS 35.0%
! AATGCAGGTTATTTAGGACT+AGG - Chr1:83056966-83056985 None:intergenic 35.0%
! CGAATGAAAGAAAGAAGTGT+GGG - Chr1:83054762-83054781 None:intergenic 35.0%
! CTCTTTTAATACATGTTGGG+AGG - Chr1:83056191-83056210 None:intergenic 35.0%
! CTTTTGCGTATATTAGTGAC+CGG - Chr1:83056619-83056638 None:intergenic 35.0%
! TATCTGTCAAATCTGAGGTT+AGG + Chr1:83057010-83057029 MsG0180004811.01.T01:intron 35.0%
! TATGGTGCATTTAGCTTCAT+TGG - Chr1:83057407-83057426 None:intergenic 35.0%
! TCCATAGGCTTTATAGTTCT+AGG + Chr1:83057295-83057314 MsG0180004811.01.T01:intron 35.0%
! TCTGTACAACGGTTAAGTTT+TGG - Chr1:83057774-83057793 None:intergenic 35.0%
! TCTTTTGATACATCATGTGC+AGG - Chr1:83055386-83055405 None:intergenic 35.0%
! TTTCCTCTATTTGATTCGCA+AGG + Chr1:83056023-83056042 MsG0180004811.01.T01:CDS 35.0%
!! ACCTGCATTGGTTCAATAAT+CGG + Chr1:83056977-83056996 MsG0180004811.01.T01:intron 35.0%
!! AGAACCATTAATACCGACTT+TGG - Chr1:83056918-83056937 None:intergenic 35.0%
!! AGAGCAGCTTTATTTGATCT+TGG + Chr1:83057990-83058009 MsG0180004811.01.T01:three_prime_UTR 35.0%
!!! TCTTTGTTTTGATGAGGTTC+CGG - Chr1:83055506-83055525 None:intergenic 35.0%
!!! TTAGTTTTCTGGTTCCACAA+AGG + Chr1:83057467-83057486 MsG0180004811.01.T01:intron 35.0%
AAGATATTGGATCACAGAGG+GGG + Chr1:83055983-83056002 MsG0180004811.01.T01:CDS 40.0%
AAGTCCATATTCTCGCTTCT+CGG + Chr1:83056352-83056371 MsG0180004811.01.T01:intron 40.0%
ACAAAGGCTCAAACACACTT+AGG + Chr1:83057483-83057502 MsG0180004811.01.T01:intron 40.0%
ACCGATTATTGAACCAATGC+AGG - Chr1:83056981-83057000 None:intergenic 40.0%
ACTGTTAGCACTCTAATAGC+TGG + Chr1:83057119-83057138 MsG0180004811.01.T01:intron 40.0%
ATAGTGCAGCACATGATGTA+TGG + Chr1:83055669-83055688 MsG0180004811.01.T01:intron 40.0%
ATGAAGAGCTGAAACAAGCA+AGG + Chr1:83057808-83057827 MsG0180004811.01.T01:CDS 40.0%
ATTATGCATGAGTGGTCCAA+AGG - Chr1:83057213-83057232 None:intergenic 40.0%
CAAGATATTGGATCACAGAG+GGG + Chr1:83055982-83056001 MsG0180004811.01.T01:CDS 40.0%
CACAAGATATTGGATCACAG+AGG + Chr1:83055980-83055999 MsG0180004811.01.T01:CDS 40.0%
CAGAGAACTCTTTCTCAAGT+AGG + Chr1:83056871-83056890 MsG0180004811.01.T01:intron 40.0%
CATTCGTTCGATTCAGTTAC+TGG + Chr1:83054776-83054795 MsG0180004811.01.T01:intron 40.0%
CTGTACACTAAGCCAATGTT+TGG + Chr1:83056319-83056338 MsG0180004811.01.T01:intron 40.0%
GCAGAATTGCTCATTGTTGT+TGG - Chr1:83055481-83055500 None:intergenic 40.0%
GCTTAAACCTTTCCTACACT+TGG + Chr1:83057505-83057524 MsG0180004811.01.T01:intron 40.0%
GCTTCTATGCAAAAGTGAGT+TGG + Chr1:83056413-83056432 MsG0180004811.01.T01:intron 40.0%
GGACCAACAAGGTAATTGTA+TGG + Chr1:83057067-83057086 MsG0180004811.01.T01:intron 40.0%
GTACCTTGCGAATCAAATAG+AGG - Chr1:83056029-83056048 None:intergenic 40.0%
GTCTTCCTAATCTTCTTCGT+TGG + Chr1:83055641-83055660 MsG0180004811.01.T01:intron 40.0%
GTTGAGTGAACTTTGTCTTG+AGG + Chr1:83057367-83057386 MsG0180004811.01.T01:intron 40.0%
TAAGTGTGTTTGAGCCTTTG+TGG - Chr1:83057484-83057503 None:intergenic 40.0%
TAATTGTTCAACGAGTGCCA+TGG + Chr1:83055902-83055921 MsG0180004811.01.T01:intron 40.0%
TGCTTATATTAGTGACCGGA+GGG + Chr1:83056732-83056751 MsG0180004811.01.T01:intron 40.0%
TGGACAACAGTTCTGTACAA+CGG - Chr1:83057785-83057804 None:intergenic 40.0%
TTGCTTATATTAGTGACCGG+AGG + Chr1:83056731-83056750 MsG0180004811.01.T01:intron 40.0%
! CTTTGGCTTATAGAAGCTTG+TGG - Chr1:83056901-83056920 None:intergenic 40.0%
! GTGAGTTGGAAACGTGAAAA+TGG + Chr1:83056427-83056446 MsG0180004811.01.T01:intron 40.0%
! TGAAAGAAAGAAGTGTGGGT+TGG - Chr1:83054758-83054777 None:intergenic 40.0%
!!! AGCTGCTCTTTGTTTTGATG+AGG - Chr1:83055512-83055531 None:intergenic 40.0%
AATAAGCATGCTACACCCTC+CGG + Chr1:83056597-83056616 MsG0180004811.01.T01:intron 45.0%
ACAATGAGCAATTCTGCTGC+CGG + Chr1:83055484-83055503 MsG0180004811.01.T01:exon 45.0%
CAGCACATGATGTATGGCTT+CGG + Chr1:83055675-83055694 MsG0180004811.01.T01:CDS 45.0%
CAGGAAGTGGCTAATTCAAG+TGG - Chr1:83055810-83055829 None:intergenic 45.0%
CCAGAAAACTAACCTCTGCA+AGG - Chr1:83057459-83057478 None:intergenic 45.0%
CTCAACTCTTTGGACCAACA+AGG + Chr1:83057056-83057075 MsG0180004811.01.T01:intron 45.0%
GAAAACTAACCTCTGCAAGG+AGG - Chr1:83057456-83057475 None:intergenic 45.0%
TAAAGCTTCTTGCGTACTGC+AGG + Chr1:83057743-83057762 MsG0180004811.01.T01:intron 45.0%
TACACCGAGAAGCGAGAATA+TGG - Chr1:83056359-83056378 None:intergenic 45.0%
TCAACCATTCATCCTTCTGC+TGG - Chr1:83057888-83057907 None:intergenic 45.0%
TCACTGACACCTCTGATTGA+AGG - Chr1:83055258-83055277 None:intergenic 45.0%
TCCATAAGTGCCACACTTTC+AGG - Chr1:83055829-83055848 None:intergenic 45.0%
TCCTGAATCGGCCCTTTAAT+AGG - Chr1:83057656-83057675 None:intergenic 45.0%
TGAACCAGCAGAAGGATGAA+TGG + Chr1:83057881-83057900 MsG0180004811.01.T01:exon 45.0%
TGCGTATATTAGTGACCGGA+GGG - Chr1:83056615-83056634 None:intergenic 45.0%
TTAGCCACTTCCTGAAAGTG+TGG + Chr1:83055816-83055835 MsG0180004811.01.T01:intron 45.0%
TTCTTACCTCGAAGAAACGG+TGG - Chr1:83054732-83054751 None:intergenic 45.0%
TTGCGTATATTAGTGACCGG+AGG - Chr1:83056616-83056635 None:intergenic 45.0%
! TATTAAAGGGCCGATTCAGG+AGG + Chr1:83057655-83057674 MsG0180004811.01.T01:intron 45.0%
! TCCTATTAAAGGGCCGATTC+AGG + Chr1:83057652-83057671 MsG0180004811.01.T01:intron 45.0%
! TCCTGAAAGTGTGGCACTTA+TGG + Chr1:83055825-83055844 MsG0180004811.01.T01:CDS 45.0%
! TCTCGCTTCTCGGTGTAAAA+TGG + Chr1:83056362-83056381 MsG0180004811.01.T01:intron 45.0%
!! TCTGAGGAAGGTTTTTGAGG+TGG + Chr1:83057857-83057876 MsG0180004811.01.T01:CDS 45.0%
!!! CCTTGCAGAGGTTAGTTTTC+TGG + Chr1:83057456-83057475 MsG0180004811.01.T01:intron 45.0%
AAAGCCTATGGAAGAAGGGG+AGG - Chr1:83057287-83057306 None:intergenic 50.0%
AACCTTTCCTACACTTGGCC+AGG + Chr1:83057510-83057529 MsG0180004811.01.T01:intron 50.0%
AACGAGTGCCATGGAGTCAT+TGG + Chr1:83055911-83055930 MsG0180004811.01.T01:intron 50.0%
AAGCCTATGGAAGAAGGGGA+GGG - Chr1:83057286-83057305 None:intergenic 50.0%
ACACATCATCTACGCGAACG+TGG + Chr1:83054666-83054685 MsG0180004811.01.T01:five_prime_UTR 50.0%
ACTTCATCCAAGCGCAGAAG+AGG + Chr1:83055550-83055569 MsG0180004811.01.T01:CDS 50.0%
AGTGCCACACTTTCAGGAAG+TGG - Chr1:83055823-83055842 None:intergenic 50.0%
CAGAATTCCTGGCCAAGTGT+AGG - Chr1:83057520-83057539 None:intergenic 50.0%
GAAAACTCCTCTTCTGCGCT+TGG - Chr1:83055560-83055579 None:intergenic 50.0%
GACAAAGGCCAATGACTCCA+TGG - Chr1:83055922-83055941 None:intergenic 50.0%
TTCCTGGCCAAGTGTAGGAA+AGG - Chr1:83057515-83057534 None:intergenic 50.0%
! ACCTCTGATTGAAGGCGTGT+CGG - Chr1:83055250-83055269 None:intergenic 50.0%
! CTGCGCTTGGATGAAGTATC+CGG - Chr1:83055547-83055566 None:intergenic 50.0%
! TTCTCGGTGTAAAATGGCCG+TGG + Chr1:83056368-83056387 MsG0180004811.01.T01:intron 50.0%
!! CAGAGGTGTCAGTGATACAG+CGG + Chr1:83055263-83055282 MsG0180004811.01.T01:intron 50.0%
!! TTGACCATGGTGCTGTCCTT+TGG + Chr1:83057194-83057213 MsG0180004811.01.T01:intron 50.0%
ATGTTGCAGCCTCCTTGCAG+AGG + Chr1:83057444-83057463 MsG0180004811.01.T01:intron 55.0%
CTTCCCTCCCCTTCTTCCAT+AGG + Chr1:83057280-83057299 MsG0180004811.01.T01:intron 55.0%
GAGGGGGAAGCTATCAGTTG+AGG + Chr1:83055999-83056018 MsG0180004811.01.T01:CDS 55.0%
GAGGTGGATGAACCAGCAGA+AGG + Chr1:83057873-83057892 MsG0180004811.01.T01:CDS 55.0%
TGGTCCAAAGGACAGCACCA+TGG - Chr1:83057201-83057220 None:intergenic 55.0%
! CCTCTGATTGAAGGCGTGTC+GGG - Chr1:83055249-83055268 None:intergenic 55.0%
! CGCTTGGATGAAGTATCCGG+CGG - Chr1:83055544-83055563 None:intergenic 55.0%
! TGAAGTATCCGGCGGTTGTG+AGG - Chr1:83055536-83055555 None:intergenic 55.0%
AGCAGCTTCCTCACAACCGC+CGG + Chr1:83055525-83055544 MsG0180004811.01.T01:CDS 60.0%
CCCGACACGCCTTCAATCAG+AGG + Chr1:83055246-83055265 MsG0180004811.01.T01:intron 60.0%
CTCTCGCCACCGTTTCTTCG+AGG + Chr1:83054723-83054742 MsG0180004811.01.T01:five_prime_UTR 60.0%
GGCCACTGACATACACCCTC+CGG - Chr1:83056750-83056769 None:intergenic 60.0%
! GACCGGAGGGTGTATGTCAG+TGG + Chr1:83056745-83056764 MsG0180004811.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 83054664 83058108 83054664 ID=MsG0180004811.01;Name=MsG0180004811.01
Chr1 mRNA 83054664 83058108 83054664 ID=MsG0180004811.01.T01;Parent=MsG0180004811.01;Name=MsG0180004811.01.T01;_AED=0.40;_eAED=0.40;_QI=102|1|1|1|0.6|0.5|6|209|136
Chr1 exon 83054664 83054744 83054664 ID=MsG0180004811.01.T01:exon:8749;Parent=MsG0180004811.01.T01
Chr1 exon 83055466 83055589 83055466 ID=MsG0180004811.01.T01:exon:8750;Parent=MsG0180004811.01.T01
Chr1 exon 83055673 83055710 83055673 ID=MsG0180004811.01.T01:exon:8751;Parent=MsG0180004811.01.T01
Chr1 exon 83055820 83055879 83055820 ID=MsG0180004811.01.T01:exon:8752;Parent=MsG0180004811.01.T01
Chr1 exon 83055970 83056044 83055970 ID=MsG0180004811.01.T01:exon:8753;Parent=MsG0180004811.01.T01
Chr1 exon 83057765 83058108 83057765 ID=MsG0180004811.01.T01:exon:8754;Parent=MsG0180004811.01.T01
Chr1 five_prime_UTR 83054664 83054744 83054664 ID=MsG0180004811.01.T01:five_prime_utr;Parent=MsG0180004811.01.T01
Chr1 five_prime_UTR 83055466 83055486 83055466 ID=MsG0180004811.01.T01:five_prime_utr;Parent=MsG0180004811.01.T01
Chr1 CDS 83055487 83055589 83055487 ID=MsG0180004811.01.T01:cds;Parent=MsG0180004811.01.T01
Chr1 CDS 83055673 83055710 83055673 ID=MsG0180004811.01.T01:cds;Parent=MsG0180004811.01.T01
Chr1 CDS 83055820 83055879 83055820 ID=MsG0180004811.01.T01:cds;Parent=MsG0180004811.01.T01
Chr1 CDS 83055970 83056044 83055970 ID=MsG0180004811.01.T01:cds;Parent=MsG0180004811.01.T01
Chr1 CDS 83057765 83057899 83057765 ID=MsG0180004811.01.T01:cds;Parent=MsG0180004811.01.T01
Chr1 three_prime_UTR 83057900 83058108 83057900 ID=MsG0180004811.01.T01:three_prime_utr;Parent=MsG0180004811.01.T01
Gene Sequence

>MsG0180004811.01.T01

ATGAGCAATTCTGCTGCCGGAACCTCATCAAAACAAAGAGCAGCTTCCTCACAACCGCCGGATACTTCATCCAAGCGCAGAAGAGGAGTTTTCCAAAGAGAATTGCAGCACATGATGTATGGCTTCGGAGATGATCCTAATCCACTTCCTGAAAGTGTGGCACTTATGGATGACATCGTTGTAGAATATATAACAGAACTGGTACATAAAGCACAAGATATTGGATCACAGAGGGGGAAGCTATCAGTTGAGGATTTCCTCTATTTGATTCGCAAGGATATGCCAAAACTTAACCGTTGTACAGAACTGTTGTCCATGAATGAAGAGCTGAAACAAGCAAGGAAACTTTTTGAACATGATGAAGAAAATCTGAGGAAGGTTTTTGAGGTGGATGAACCAGCAGAAGGATGA
Protein sequence

>MsG0180004811.01.T01

MSNSAAGTSSKQRAASSQPPDTSSKRRRGVFQRELQHMMYGFGDDPNPLPESVALMDDIVVEYITELVHKAQDIGSQRGKLSVEDFLYLIRKDMPKLNRCTELLSMNEELKQARKLFEHDEENLRKVFEVDEPAEG*