AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004877.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004877.01.T01 MTR_1g088775 98.529 340 5 0 5 344 27 366 0.0 698
MsG0180004877.01.T01 MTR_7g075090 94.627 335 18 0 10 344 32 366 0.0 672
MsG0180004877.01.T01 MTR_8g036040 67.665 334 108 0 11 344 25 358 2.08e-176 493
MsG0180004877.01.T01 MTR_8g036035 66.667 336 110 2 10 344 28 362 5.37e-164 462
MsG0180004877.01.T01 MTR_8g036020 68.910 312 96 1 33 344 18 328 1.49e-160 452
MsG0180004877.01.T01 MTR_8g036050 63.462 312 109 1 33 344 1 307 5.03e-148 419
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004877.01.T01 AT2G45440 79.403 335 69 0 10 344 31 365 0.0 570
MsG0180004877.01.T01 AT3G60880 79.104 335 70 0 10 344 31 365 0.0 561
MsG0180004877.01.T01 AT3G60880 79.104 335 70 0 10 344 30 364 0.0 561

Find 90 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAATAGAATTTGCCAATT+TGG 0.151527 1:+83903784 MsG0180004877.01.T01:CDS
CCGCATTGGGAGGTGGAAAT+TGG 0.197311 1:-83902427 None:intergenic
ACCTATTTCCTTCACCAAAT+TGG 0.206485 1:-83903798 None:intergenic
GGTGGGAAAATCAAGGTTAT+TGG 0.223073 1:+83903188 MsG0180004877.01.T01:CDS
TGGTTAGTCGATATTAATTT+AGG 0.225709 1:+83903879 MsG0180004877.01.T01:exon
CTTGTACTGGTTACTTTGTT+TGG 0.243493 1:+83904039 MsG0180004877.01.T01:three_prime_UTR
GATTATTCAGGAACTCTTAC+TGG 0.297793 1:+83902379 MsG0180004877.01.T01:intron
ATCAAGGTTATTGGAAATAC+TGG 0.303578 1:+83903197 MsG0180004877.01.T01:CDS
GCCAATTTGGTGAAGGAAAT+AGG 0.310672 1:+83903797 MsG0180004877.01.T01:CDS
GCGCACACAGTTAATTGTTT+TGG 0.323823 1:+83903167 MsG0180004877.01.T01:CDS
GTTGCAAGCAATCTGATTCC+TGG 0.342044 1:+83903584 MsG0180004877.01.T01:CDS
TAAGATCTTGTTTCTTGTAC+TGG 0.369891 1:+83904026 MsG0180004877.01.T01:three_prime_UTR
GTGTTCAAACCAATGGGATT+TGG 0.372649 1:-83903692 None:intergenic
TGTTGGAACTGAAGACGTTC+AGG 0.373512 1:+83903832 MsG0180004877.01.T01:CDS
AGCTCTTGCCTTTGATTGAC+TGG 0.378010 1:+83903657 MsG0180004877.01.T01:CDS
ATCAATGCCATGATGCTAGA+TGG 0.385109 1:+83903534 MsG0180004877.01.T01:CDS
TTGCTCAACTTGGAGTTGTC+AGG 0.401383 1:+83903720 MsG0180004877.01.T01:CDS
ACAAATGGCAACCTGAAAAC+TGG 0.401923 1:-83903743 None:intergenic
TGTTAGTTATTTATTGAGTT+AGG 0.404137 1:+83903903 MsG0180004877.01.T01:three_prime_UTR
CTTTCAAAGTGTGCTTTCCA+TGG 0.406034 1:+83903340 MsG0180004877.01.T01:CDS
AACACGGCTCTTGCTCAACT+TGG 0.407658 1:+83903710 MsG0180004877.01.T01:CDS
TCATCTCAAAACTCCGCATT+GGG 0.420171 1:-83902440 None:intergenic
GACTTATTGTATCCTTTCTC+CGG 0.423830 1:+83903936 MsG0180004877.01.T01:three_prime_UTR
CTTCATATAAACCCTTACTA+TGG 0.428403 1:+83903287 MsG0180004877.01.T01:CDS
GGAGTTGAAGGTGTTATTGT+TGG 0.429517 1:+83903089 MsG0180004877.01.T01:CDS
CATAGTAAGGGTTTATATGA+AGG 0.438848 1:-83903286 None:intergenic
TTACTATGGCAAAACCTCAT+TGG 0.439136 1:+83903301 MsG0180004877.01.T01:CDS
TATAATGTGCCTTCACGAAC+TGG 0.441534 1:+83903377 MsG0180004877.01.T01:CDS
GTTATTGTTGGTGGCACAAC+TGG 0.447799 1:+83903101 MsG0180004877.01.T01:CDS
AATTATGTATGTTGTTGTGC+TGG 0.460636 1:+83903984 MsG0180004877.01.T01:three_prime_UTR
CTTAGCTCAAAATACTTGCT+TGG 0.461095 1:+83903430 MsG0180004877.01.T01:CDS
GCTCAAAATACTTGCTTGGC+TGG 0.463469 1:+83903434 MsG0180004877.01.T01:CDS
TTCATCTCAAAACTCCGCAT+TGG 0.466411 1:-83902441 None:intergenic
GTGAAGGTCAATTAATGAGC+TGG 0.470889 1:+83903123 MsG0180004877.01.T01:CDS
ATGCGAGAACTCATGTTTGA+GGG 0.476788 1:+83903611 MsG0180004877.01.T01:CDS
AGATGGGGTTATGGAGCTAC+TGG 0.478069 1:+83903551 MsG0180004877.01.T01:CDS
TCAAGATCAAATCGACCATC+AGG 0.480309 1:-83903029 None:intergenic
GTTGAAGGTGTTATTGTTGG+TGG 0.483414 1:+83903092 MsG0180004877.01.T01:CDS
CAAAACTCCGCATTGGGAGG+TGG 0.487292 1:-83902434 None:intergenic
CATGATGCTAGATGGGGTTA+TGG 0.493610 1:+83903542 MsG0180004877.01.T01:CDS
TACTTGCTTGGCTGGTGTCA+AGG 0.500800 1:+83903442 MsG0180004877.01.T01:CDS
CAGATCGAGAGTGGAGTTGA+AGG 0.501168 1:+83903077 MsG0180004877.01.T01:CDS
ATAGAATCGTTGTGTGGAGC+GGG 0.501345 1:+83903504 MsG0180004877.01.T01:CDS
AATGCGAGAACTCATGTTTG+AGG 0.508177 1:+83903610 MsG0180004877.01.T01:CDS
AACCAATGGGATTTGGCATG+TGG 0.510972 1:-83903685 None:intergenic
GCAATTCATGCCACTGAGCA+AGG 0.519046 1:+83903239 MsG0180004877.01.T01:CDS
TTTCAAAGTGTGCTTTCCAT+GGG 0.520623 1:+83903341 MsG0180004877.01.T01:CDS
GATTTCACAGCTGCTTGTGT+AGG 0.522599 1:-83902405 None:intergenic
AAGAGCTTAGAATTCAATGT+AGG 0.522936 1:-83903641 None:intergenic
AAGAGCCGTGTTCAAACCAA+TGG 0.526094 1:-83903699 None:intergenic
TCTAATGGGAGAGGTACAAA+TGG 0.526400 1:-83903758 None:intergenic
AATCGACCATCAGGTAGGTA+TGG 0.528759 1:-83903020 None:intergenic
AGAATTTGCCAATTTGGTGA+AGG 0.533742 1:+83903790 MsG0180004877.01.T01:CDS
CAAAACCTCATTGGATGGTA+TGG 0.535451 1:+83903310 MsG0180004877.01.T01:CDS
AGGAATGTGTGGGAAATGAC+AGG 0.543586 1:+83903462 MsG0180004877.01.T01:CDS
TCTTGAAGCATACGATGCCT+TGG 0.545550 1:+83903046 MsG0180004877.01.T01:CDS
TTCCACATGCCAAATCCCAT+TGG 0.545798 1:+83903683 MsG0180004877.01.T01:CDS
TGGCGGTTAATACAATATGC+AGG 0.549833 1:-83904073 None:intergenic
GGCTGGTGTCAAGGAATGTG+TGG 0.556357 1:+83903451 MsG0180004877.01.T01:CDS
CATAACCCCATCTAGCATCA+TGG 0.567567 1:-83903541 None:intergenic
TCAATGCCATGATGCTAGAT+GGG 0.567969 1:+83903535 MsG0180004877.01.T01:CDS
TGGAAAAGCCAGTCAATCAA+AGG 0.572095 1:-83903665 None:intergenic
TATGGCAAAACCTCATTGGA+TGG 0.575275 1:+83903305 MsG0180004877.01.T01:CDS
ATATATGATCGTGGGTCCCA+TGG 0.576230 1:-83903357 None:intergenic
ATAGTAAGGGTTTATATGAA+GGG 0.577466 1:-83903285 None:intergenic
AGAGCCGTGTTCAAACCAAT+GGG 0.577523 1:-83903698 None:intergenic
GTAAATATGCAGATCGAGAG+TGG 0.578320 1:+83903068 MsG0180004877.01.T01:CDS
TGAAGGTCAATTAATGAGCT+GGG 0.584644 1:+83903124 MsG0180004877.01.T01:CDS
TATTTACAGGACTTGTACAG+AGG 0.599967 1:+83902959 MsG0180004877.01.T01:intron
ATGAGTTCTCGCATTAAACC+AGG 0.602598 1:-83903602 None:intergenic
AATAGAATCGTTGTGTGGAG+CGG 0.613867 1:+83903503 MsG0180004877.01.T01:CDS
AAATCCCATTGGTTTGAACA+CGG 0.620889 1:+83903694 MsG0180004877.01.T01:CDS
TCTCAAAACTCCGCATTGGG+AGG 0.623035 1:-83902437 None:intergenic
GGCACATTATATATGATCGT+GGG 0.623516 1:-83903365 None:intergenic
AGGCACATTATATATGATCG+TGG 0.625176 1:-83903366 None:intergenic
AAGGATACAATAAGTCTACA+AGG 0.625433 1:-83903929 None:intergenic
AAAACTCCATACCTACCTGA+TGG 0.627623 1:+83903014 MsG0180004877.01.T01:CDS
ATACTGGAAGTAACTCGACA+AGG 0.635535 1:+83903213 MsG0180004877.01.T01:CDS
TACTGGAAGTAACTCGACAA+GGG 0.637824 1:+83903214 MsG0180004877.01.T01:CDS
CTCGATCTGCATATTTACCA+AGG 0.639513 1:-83903063 None:intergenic
ATGTCTTGACCAGTTCGTGA+AGG 0.650374 1:-83903386 None:intergenic
TATTCAGGAACTCTTACTGG+AGG 0.652852 1:+83902382 MsG0180004877.01.T01:intron
GTTGGTGGCACAACTGGTGA+AGG 0.663404 1:+83903107 MsG0180004877.01.T01:CDS
GCTGGTGTCAAGGAATGTGT+GGG 0.663954 1:+83903452 MsG0180004877.01.T01:CDS
CTGATAATAGAATCGTTGTG+TGG 0.669847 1:+83903498 MsG0180004877.01.T01:CDS
AACCGCAAAACCTTGCTCAG+TGG 0.673625 1:-83903249 None:intergenic
GATCAAATCGACCATCAGGT+AGG 0.678861 1:-83903025 None:intergenic
AGCAACCATACCATCCAATG+AGG 0.685283 1:-83903315 None:intergenic
CCAATTTCCACCTCCCAATG+CGG 0.691962 1:+83902427 MsG0180004877.01.T01:CDS
CAATGCCATGATGCTAGATG+GGG 0.711874 1:+83903536 MsG0180004877.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGCTATATATTGTATTTAC+AGG + Chr1:83902946-83902965 MsG0180004877.01.T01:intron 20.0%
!! TGTTAGTTATTTATTGAGTT+AGG + Chr1:83903903-83903922 MsG0180004877.01.T01:three_prime_UTR 20.0%
!!! AATTCTATTCTTTTCTCTAA+TGG - Chr1:83903776-83903795 None:intergenic 20.0%
!!! ATGATTTTAATGATGATGAA+GGG + Chr1:83902168-83902187 MsG0180004877.01.T01:CDS 20.0%
!!! ATTCTATTCTTTTCTCTAAT+GGG - Chr1:83903775-83903794 None:intergenic 20.0%
!!! GTTTTCATCTTTTTATTTTC+TGG + Chr1:83902597-83902616 MsG0180004877.01.T01:intron 20.0%
!!! TATGATTTTAATGATGATGA+AGG + Chr1:83902167-83902186 MsG0180004877.01.T01:CDS 20.0%
!!! TTCTAAGGAGTATATTTAAA+AGG + Chr1:83902845-83902864 MsG0180004877.01.T01:intron 20.0%
! AAGAATAGAATTTGCCAATT+TGG + Chr1:83903784-83903803 MsG0180004877.01.T01:CDS 25.0%
! AATCTCAAATTGAATGATAG+AGG - Chr1:83902728-83902747 None:intergenic 25.0%
! AGTATCAAAACTAATGAATG+TGG - Chr1:83902499-83902518 None:intergenic 25.0%
! ATAGTAAGGGTTTATATGAA+GGG - Chr1:83903288-83903307 None:intergenic 25.0%
! GAAAAACAAATCCAAATTAG+TGG - Chr1:83902706-83902725 None:intergenic 25.0%
! TTGAAGTTTCACAAAAAAAC+CGG - Chr1:83903958-83903977 None:intergenic 25.0%
!! AATCATGGAATCACAAATTT+TGG + Chr1:83902916-83902935 MsG0180004877.01.T01:intron 25.0%
!! TAAGGAGTATATTTAAAAGG+TGG + Chr1:83902848-83902867 MsG0180004877.01.T01:intron 25.0%
!! TATTGTGATTTGTGATGAAA+CGG + Chr1:83902650-83902669 MsG0180004877.01.T01:intron 25.0%
!! TGGTTAGTCGATATTAATTT+AGG + Chr1:83903879-83903898 MsG0180004877.01.T01:exon 25.0%
!! TTGAGAGTATAATTTAGCTA+AGG + Chr1:83902219-83902238 MsG0180004877.01.T01:intron 25.0%
!!! AGATTTTGTTTTGACATACA+AGG + Chr1:83902743-83902762 MsG0180004877.01.T01:intron 25.0%
!!! TGTTGCTTTTGTTTTAATCA+TGG + Chr1:83902901-83902920 MsG0180004877.01.T01:intron 25.0%
!!! TTTTGAGATGAAAAATAGGT+TGG + Chr1:83902452-83902471 MsG0180004877.01.T01:intron 25.0%
AAGAGCTTAGAATTCAATGT+AGG - Chr1:83903644-83903663 None:intergenic 30.0%
AAGGATACAATAAGTCTACA+AGG - Chr1:83903932-83903951 None:intergenic 30.0%
AATTATGTATGTTGTTGTGC+TGG + Chr1:83903984-83904003 MsG0180004877.01.T01:three_prime_UTR 30.0%
ACAAAAGCAACAACACAAAT+AGG - Chr1:83902893-83902912 None:intergenic 30.0%
AGCACAATCAATATCAATCA+CGG - Chr1:83902297-83902316 None:intergenic 30.0%
ATCAAGGTTATTGGAAATAC+TGG + Chr1:83903197-83903216 MsG0180004877.01.T01:CDS 30.0%
CATAGTAAGGGTTTATATGA+AGG - Chr1:83903289-83903308 None:intergenic 30.0%
CTTCATATAAACCCTTACTA+TGG + Chr1:83903287-83903306 MsG0180004877.01.T01:CDS 30.0%
CTTGCTTATTTCCACTAATT+TGG + Chr1:83902692-83902711 MsG0180004877.01.T01:intron 30.0%
GTTTGTCTGTATGATTATTC+AGG + Chr1:83902367-83902386 MsG0180004877.01.T01:intron 30.0%
! AGATTTTGTTAGCATGTATG+AGG + Chr1:83902270-83902289 MsG0180004877.01.T01:intron 30.0%
! ATTGTGATTTGTGATGAAAC+GGG + Chr1:83902651-83902670 MsG0180004877.01.T01:intron 30.0%
! CAAAATCTAAGATACAGGAA+TGG - Chr1:83902258-83902277 None:intergenic 30.0%
! GCTAACAAAATCTAAGATAC+AGG - Chr1:83902263-83902282 None:intergenic 30.0%
! TAAGATCTTGTTTCTTGTAC+TGG + Chr1:83904026-83904045 MsG0180004877.01.T01:three_prime_UTR 30.0%
!!! ACACAGTTAATTGTTTTGGT+GGG + Chr1:83903171-83903190 MsG0180004877.01.T01:CDS 30.0%
!!! GCTAAGTTTTGAATTACATG+CGG - Chr1:83903416-83903435 None:intergenic 30.0%
!!! GGAGTTTTGAGATGAAAAAT+AGG + Chr1:83902448-83902467 MsG0180004877.01.T01:CDS 30.0%
AAGCATTATTCCACTAAGTG+GGG + Chr1:83902534-83902553 MsG0180004877.01.T01:intron 35.0%
ACCTATTTCCTTCACCAAAT+TGG - Chr1:83903801-83903820 None:intergenic 35.0%
AGGCACATTATATATGATCG+TGG - Chr1:83903369-83903388 None:intergenic 35.0%
CAAGCATTATTCCACTAAGT+GGG + Chr1:83902533-83902552 MsG0180004877.01.T01:intron 35.0%
CTGATAATAGAATCGTTGTG+TGG + Chr1:83903498-83903517 MsG0180004877.01.T01:CDS 35.0%
CTTAGCTCAAAATACTTGCT+TGG + Chr1:83903430-83903449 MsG0180004877.01.T01:CDS 35.0%
GACTTATTGTATCCTTTCTC+CGG + Chr1:83903936-83903955 MsG0180004877.01.T01:three_prime_UTR 35.0%
GATTATTCAGGAACTCTTAC+TGG + Chr1:83902379-83902398 MsG0180004877.01.T01:intron 35.0%
GCACAATCAATATCAATCAC+GGG - Chr1:83902296-83902315 None:intergenic 35.0%
GGCACATTATATATGATCGT+GGG - Chr1:83903368-83903387 None:intergenic 35.0%
TATTTACAGGACTTGTACAG+AGG + Chr1:83902959-83902978 MsG0180004877.01.T01:intron 35.0%
TGAAGGTCAATTAATGAGCT+GGG + Chr1:83903124-83903143 MsG0180004877.01.T01:CDS 35.0%
TTACTATGGCAAAACCTCAT+TGG + Chr1:83903301-83903320 MsG0180004877.01.T01:CDS 35.0%
TTCACAAAAAAACCGGAGAA+AGG - Chr1:83903951-83903970 None:intergenic 35.0%
TTTCAAAGTGTGCTTTCCAT+GGG + Chr1:83903341-83903360 MsG0180004877.01.T01:CDS 35.0%
! AATGAGGTTTTGCCATAGTA+AGG - Chr1:83903302-83903321 None:intergenic 35.0%
! AGAATTTGCCAATTTGGTGA+AGG + Chr1:83903790-83903809 MsG0180004877.01.T01:CDS 35.0%
! ATAGGTCGTCAACATTTTGT+TGG + Chr1:83903815-83903834 MsG0180004877.01.T01:CDS 35.0%
! ATGAGGTTTTGCCATAGTAA+GGG - Chr1:83903301-83903320 None:intergenic 35.0%
! ATTCTTTTCTCTAATGGGAG+AGG - Chr1:83903770-83903789 None:intergenic 35.0%
! TTCTGGAAGAGACACAAATA+TGG + Chr1:83902614-83902633 MsG0180004877.01.T01:intron 35.0%
!! AAATCCCATTGGTTTGAACA+CGG + Chr1:83903694-83903713 MsG0180004877.01.T01:CDS 35.0%
!! AGGTAGGTATGGAGTTTTAA+TGG - Chr1:83903012-83903031 None:intergenic 35.0%
!! CTTGTACTGGTTACTTTGTT+TGG + Chr1:83904039-83904058 MsG0180004877.01.T01:three_prime_UTR 35.0%
!! TGATGACAACGACTTTTTCT+TGG + Chr1:83903859-83903878 MsG0180004877.01.T01:CDS 35.0%
!!! AAGTTTTGAATTACATGCGG+TGG - Chr1:83903413-83903432 None:intergenic 35.0%
!!! CACACAGTTAATTGTTTTGG+TGG + Chr1:83903170-83903189 MsG0180004877.01.T01:CDS 35.0%
!!! TTGTTTTGGTGGGAAAATCA+AGG + Chr1:83903181-83903200 MsG0180004877.01.T01:CDS 35.0%
AAAACTCCATACCTACCTGA+TGG + Chr1:83903014-83903033 MsG0180004877.01.T01:CDS 40.0%
AATAGAATCGTTGTGTGGAG+CGG + Chr1:83903503-83903522 MsG0180004877.01.T01:CDS 40.0%
AATGCGAGAACTCATGTTTG+AGG + Chr1:83903610-83903629 MsG0180004877.01.T01:CDS 40.0%
ACAAATGGCAACCTGAAAAC+TGG - Chr1:83903746-83903765 None:intergenic 40.0%
ATACTCCTTAGAACATGCAG+CGG - Chr1:83902838-83902857 None:intergenic 40.0%
ATACTGGAAGTAACTCGACA+AGG + Chr1:83903213-83903232 MsG0180004877.01.T01:CDS 40.0%
ATCAATGCCATGATGCTAGA+TGG + Chr1:83903534-83903553 MsG0180004877.01.T01:CDS 40.0%
ATGAGTTCTCGCATTAAACC+AGG - Chr1:83903605-83903624 None:intergenic 40.0%
ATGCGAGAACTCATGTTTGA+GGG + Chr1:83903611-83903630 MsG0180004877.01.T01:CDS 40.0%
ATTATTCCACTAAGTGGGGT+TGG + Chr1:83902538-83902557 MsG0180004877.01.T01:intron 40.0%
CAAAACCTCATTGGATGGTA+TGG + Chr1:83903310-83903329 MsG0180004877.01.T01:CDS 40.0%
CCAAGCATTATTCCACTAAG+TGG + Chr1:83902532-83902551 MsG0180004877.01.T01:intron 40.0%
CCACTTAGTGGAATAATGCT+TGG - Chr1:83902535-83902554 None:intergenic 40.0%
CTCGATCTGCATATTTACCA+AGG - Chr1:83903066-83903085 None:intergenic 40.0%
CTTTCAAAGTGTGCTTTCCA+TGG + Chr1:83903340-83903359 MsG0180004877.01.T01:CDS 40.0%
GGTGGGAAAATCAAGGTTAT+TGG + Chr1:83903188-83903207 MsG0180004877.01.T01:CDS 40.0%
GTAAATATGCAGATCGAGAG+TGG + Chr1:83903068-83903087 MsG0180004877.01.T01:CDS 40.0%
GTGAAGGTCAATTAATGAGC+TGG + Chr1:83903123-83903142 MsG0180004877.01.T01:CDS 40.0%
GTGTTCAAACCAATGGGATT+TGG - Chr1:83903695-83903714 None:intergenic 40.0%
TACTGGAAGTAACTCGACAA+GGG + Chr1:83903214-83903233 MsG0180004877.01.T01:CDS 40.0%
TATAATGTGCCTTCACGAAC+TGG + Chr1:83903377-83903396 MsG0180004877.01.T01:CDS 40.0%
TATGGCAAAACCTCATTGGA+TGG + Chr1:83903305-83903324 MsG0180004877.01.T01:CDS 40.0%
TATTCAGGAACTCTTACTGG+AGG + Chr1:83902382-83902401 MsG0180004877.01.T01:intron 40.0%
TCAAGATCAAATCGACCATC+AGG - Chr1:83903032-83903051 None:intergenic 40.0%
TCAATGCCATGATGCTAGAT+GGG + Chr1:83903535-83903554 MsG0180004877.01.T01:CDS 40.0%
TCATCTCAAAACTCCGCATT+GGG - Chr1:83902443-83902462 None:intergenic 40.0%
TGGAAAAGCCAGTCAATCAA+AGG - Chr1:83903668-83903687 None:intergenic 40.0%
TTCATCTCAAAACTCCGCAT+TGG - Chr1:83902444-83902463 None:intergenic 40.0%
! GCCAATTTGGTGAAGGAAAT+AGG + Chr1:83903797-83903816 MsG0180004877.01.T01:CDS 40.0%
! GCGCACACAGTTAATTGTTT+TGG + Chr1:83903167-83903186 MsG0180004877.01.T01:CDS 40.0%
! TCTAATGGGAGAGGTACAAA+TGG - Chr1:83903761-83903780 None:intergenic 40.0%
!! GGAGTTGAAGGTGTTATTGT+TGG + Chr1:83903089-83903108 MsG0180004877.01.T01:CDS 40.0%
!! GTTGAAGGTGTTATTGTTGG+TGG + Chr1:83903092-83903111 MsG0180004877.01.T01:CDS 40.0%
AACCAATGGGATTTGGCATG+TGG - Chr1:83903688-83903707 None:intergenic 45.0%
AAGAGCCGTGTTCAAACCAA+TGG - Chr1:83903702-83903721 None:intergenic 45.0%
AATCGACCATCAGGTAGGTA+TGG - Chr1:83903023-83903042 None:intergenic 45.0%
AGAGCCGTGTTCAAACCAAT+GGG - Chr1:83903701-83903720 None:intergenic 45.0%
AGCAACCATACCATCCAATG+AGG - Chr1:83903318-83903337 None:intergenic 45.0%
AGCTCTTGCCTTTGATTGAC+TGG + Chr1:83903657-83903676 MsG0180004877.01.T01:CDS 45.0%
AGGAATGTGTGGGAAATGAC+AGG + Chr1:83903462-83903481 MsG0180004877.01.T01:CDS 45.0%
ATAGAATCGTTGTGTGGAGC+GGG + Chr1:83903504-83903523 MsG0180004877.01.T01:CDS 45.0%
ATATATGATCGTGGGTCCCA+TGG - Chr1:83903360-83903379 None:intergenic 45.0%
ATGTCTTGACCAGTTCGTGA+AGG - Chr1:83903389-83903408 None:intergenic 45.0%
CAATGCCATGATGCTAGATG+GGG + Chr1:83903536-83903555 MsG0180004877.01.T01:CDS 45.0%
CATAACCCCATCTAGCATCA+TGG - Chr1:83903544-83903563 None:intergenic 45.0%
CATGATGCTAGATGGGGTTA+TGG + Chr1:83903542-83903561 MsG0180004877.01.T01:CDS 45.0%
GATCAAATCGACCATCAGGT+AGG - Chr1:83903028-83903047 None:intergenic 45.0%
GATTTCACAGCTGCTTGTGT+AGG - Chr1:83902408-83902427 None:intergenic 45.0%
GCTCAAAATACTTGCTTGGC+TGG + Chr1:83903434-83903453 MsG0180004877.01.T01:CDS 45.0%
GTTGCAAGCAATCTGATTCC+TGG + Chr1:83903584-83903603 MsG0180004877.01.T01:CDS 45.0%
TCTTGAAGCATACGATGCCT+TGG + Chr1:83903046-83903065 MsG0180004877.01.T01:CDS 45.0%
TGTTGGAACTGAAGACGTTC+AGG + Chr1:83903832-83903851 MsG0180004877.01.T01:CDS 45.0%
TTCCACATGCCAAATCCCAT+TGG + Chr1:83903683-83903702 MsG0180004877.01.T01:CDS 45.0%
TTGCTCAACTTGGAGTTGTC+AGG + Chr1:83903720-83903739 MsG0180004877.01.T01:CDS 45.0%
!! GTTATTGTTGGTGGCACAAC+TGG + Chr1:83903101-83903120 MsG0180004877.01.T01:CDS 45.0%
!! AAACATTAAATAAAAAAAAT+TGG - Chr1:83902351-83902370 None:intergenic 5.0%
AACACGGCTCTTGCTCAACT+TGG + Chr1:83903710-83903729 MsG0180004877.01.T01:CDS 50.0%
AACCGCAAAACCTTGCTCAG+TGG - Chr1:83903252-83903271 None:intergenic 50.0%
AGATGGGGTTATGGAGCTAC+TGG + Chr1:83903551-83903570 MsG0180004877.01.T01:CDS 50.0%
CAGATCGAGAGTGGAGTTGA+AGG + Chr1:83903077-83903096 MsG0180004877.01.T01:CDS 50.0%
CCAATTTCCACCTCCCAATG+CGG + Chr1:83902427-83902446 MsG0180004877.01.T01:CDS 50.0%
CTAATGCCAACCCCACTTAG+TGG - Chr1:83902547-83902566 None:intergenic 50.0%
CTGTACCGCTGCATGTTCTA+AGG + Chr1:83902830-83902849 MsG0180004877.01.T01:intron 50.0%
GCAATTCATGCCACTGAGCA+AGG + Chr1:83903239-83903258 MsG0180004877.01.T01:CDS 50.0%
TCTCAAAACTCCGCATTGGG+AGG - Chr1:83902440-83902459 None:intergenic 50.0%
! ACTGAGCAAGGTTTTGCGGT+TGG + Chr1:83903251-83903270 MsG0180004877.01.T01:CDS 50.0%
! GAGTTGTCAGGCCAGTTTTC+AGG + Chr1:83903732-83903751 MsG0180004877.01.T01:CDS 50.0%
! GCTGGTGTCAAGGAATGTGT+GGG + Chr1:83903452-83903471 MsG0180004877.01.T01:CDS 50.0%
! GGTTTTGCGGTTGGAATGCA+TGG + Chr1:83903260-83903279 MsG0180004877.01.T01:CDS 50.0%
! TACTTGCTTGGCTGGTGTCA+AGG + Chr1:83903442-83903461 MsG0180004877.01.T01:CDS 50.0%
! TGCCACTGAGCAAGGTTTTG+CGG + Chr1:83903247-83903266 MsG0180004877.01.T01:CDS 50.0%
AAGGTGGTCTCGCTTGCTTC+TGG + Chr1:83902864-83902883 MsG0180004877.01.T01:intron 55.0%
CAAAACTCCGCATTGGGAGG+TGG - Chr1:83902437-83902456 None:intergenic 55.0%
CCGCATTGGGAGGTGGAAAT+TGG - Chr1:83902430-83902449 None:intergenic 55.0%
! GGCTGGTGTCAAGGAATGTG+TGG + Chr1:83903451-83903470 MsG0180004877.01.T01:CDS 55.0%
!! GTTGGTGGCACAACTGGTGA+AGG + Chr1:83903107-83903126 MsG0180004877.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr1 gene 83902164 83904086 83902164 ID=MsG0180004877.01;Name=MsG0180004877.01
Chr1 mRNA 83902164 83904086 83902164 ID=MsG0180004877.01.T01;Parent=MsG0180004877.01;Name=MsG0180004877.01.T01;_AED=0.48;_eAED=0.49;_QI=0|0.5|0.66|1|1|1|3|191|344
Chr1 exon 83902164 83902189 83902164 ID=MsG0180004877.01.T01:exon:9067;Parent=MsG0180004877.01.T01
Chr1 exon 83902389 83902469 83902389 ID=MsG0180004877.01.T01:exon:9068;Parent=MsG0180004877.01.T01
Chr1 exon 83902968 83904086 83902968 ID=MsG0180004877.01.T01:exon:9069;Parent=MsG0180004877.01.T01
Chr1 CDS 83902164 83902189 83902164 ID=MsG0180004877.01.T01:cds;Parent=MsG0180004877.01.T01
Chr1 CDS 83902389 83902469 83902389 ID=MsG0180004877.01.T01:cds;Parent=MsG0180004877.01.T01
Chr1 CDS 83902968 83903895 83902968 ID=MsG0180004877.01.T01:cds;Parent=MsG0180004877.01.T01
Chr1 three_prime_UTR 83903896 83904086 83903896 ID=MsG0180004877.01.T01:three_prime_utr;Parent=MsG0180004877.01.T01
Gene Sequence

>MsG0180004877.01.T01

ATGTATGATTTTAATGATGATGAAGGGAACTCTTACTGGAGGCCTACACAAGCAGCTGTGAAATCCAATTTCCACCTCCCAATGCGGAGTTTTGAGATGAAAAATAGGACTTGTACAGAGGACATTAAGTGTCTGAGATTGATAACTGCCATTAAAACTCCATACCTACCTGATGGTCGATTTGATCTTGAAGCATACGATGCCTTGGTAAATATGCAGATCGAGAGTGGAGTTGAAGGTGTTATTGTTGGTGGCACAACTGGTGAAGGTCAATTAATGAGCTGGGAAGAGCACATAATGCTTATTGCGCACACAGTTAATTGTTTTGGTGGGAAAATCAAGGTTATTGGAAATACTGGAAGTAACTCGACAAGGGAAGCAATTCATGCCACTGAGCAAGGTTTTGCGGTTGGAATGCATGGTGCCCTTCATATAAACCCTTACTATGGCAAAACCTCATTGGATGGTATGGTTGCTCACTTTCAAAGTGTGCTTTCCATGGGACCCACGATCATATATAATGTGCCTTCACGAACTGGTCAAGACATTCCACCGCATGTAATTCAAAACTTAGCTCAAAATACTTGCTTGGCTGGTGTCAAGGAATGTGTGGGAAATGACAGGATCAAAGAGTATACTGATAATAGAATCGTTGTGTGGAGCGGGAACGATGATCAATGCCATGATGCTAGATGGGGTTATGGAGCTACTGGAGTGATATCTGTTGCAAGCAATCTGATTCCTGGTTTAATGCGAGAACTCATGTTTGAGGGCAAAAATCCTACATTGAATTCTAAGCTCTTGCCTTTGATTGACTGGCTTTTCCACATGCCAAATCCCATTGGTTTGAACACGGCTCTTGCTCAACTTGGAGTTGTCAGGCCAGTTTTCAGGTTGCCATTTGTACCTCTCCCATTAGAGAAAAGAATAGAATTTGCCAATTTGGTGAAGGAAATAGGTCGTCAACATTTTGTTGGAACTGAAGACGTTCAGGTTCTTGATGACAACGACTTTTTCTTGGTTAGTCGATATTAA
Protein sequence

>MsG0180004877.01.T01

MYDFNDDEGNSYWRPTQAAVKSNFHLPMRSFEMKNRTCTEDIKCLRLITAIKTPYLPDGRFDLEAYDALVNMQIESGVEGVIVGGTTGEGQLMSWEEHIMLIAHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVGMHGALHINPYYGKTSLDGMVAHFQSVLSMGPTIIYNVPSRTGQDIPPHVIQNLAQNTCLAGVKECVGNDRIKEYTDNRIVVWSGNDDQCHDARWGYGATGVISVASNLIPGLMRELMFEGKNPTLNSKLLPLIDWLFHMPNPIGLNTALAQLGVVRPVFRLPFVPLPLEKRIEFANLVKEIGRQHFVGTEDVQVLDDNDFFLVSRY*