AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005038.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005038.01.T01 MTR_1g492790 97.041 507 8 3 1 506 1 501 0.0 1024
MsG0180005038.01.T01 MTR_1g060990 39.461 408 181 15 10 403 27 382 9.15e-74 242
MsG0180005038.01.T01 MTR_1g098900 34.853 307 153 10 118 384 56 355 1.29e-41 158
MsG0180005038.01.T01 MTR_1g098900 40.541 111 62 3 99 208 436 543 4.98e-19 90.9
MsG0180005038.01.T01 MTR_6g035370 61.957 92 34 1 118 209 54 144 2.69e-31 128
MsG0180005038.01.T01 MTR_6g035370 44.330 97 52 2 115 210 460 555 1.18e-18 89.7
MsG0180005038.01.T01 MTR_1g098870 56.604 106 45 1 100 205 36 140 5.55e-30 124
MsG0180005038.01.T01 MTR_1g098870 47.525 101 51 2 111 210 364 463 4.35e-19 90.9
MsG0180005038.01.T01 MTR_2g026725 27.193 228 116 8 308 493 114 333 3.79e-14 74.3
MsG0180005038.01.T01 MTR_2g026725 39.785 93 54 2 114 205 257 348 2.81e-13 71.6
MsG0180005038.01.T01 MTR_7g114860 41.237 97 46 3 119 205 381 476 2.08e-13 72.8
MsG0180005038.01.T01 MTR_1g081180 45.122 82 42 2 111 190 410 490 6.72e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005038.01.T01 AT5G03680 42.455 391 176 9 119 482 119 487 1.80e-85 275
MsG0180005038.01.T01 AT3G10000 38.525 366 194 11 40 400 15 354 1.18e-64 218
MsG0180005038.01.T01 AT3G10000 36.612 366 191 12 40 400 15 344 2.81e-56 195
MsG0180005038.01.T01 AT1G76890 31.696 448 215 12 115 489 37 466 1.80e-49 179
MsG0180005038.01.T01 AT1G76890 40.000 160 78 8 89 234 360 515 1.51e-19 92.4
MsG0180005038.01.T01 AT1G76880 54.701 117 46 2 98 214 46 155 8.65e-31 126
MsG0180005038.01.T01 AT1G76880 45.361 97 51 2 115 210 404 499 8.33e-18 87.0
MsG0180005038.01.T01 AT1G33240 44.318 88 47 2 119 205 435 521 2.89e-15 79.3
MsG0180005038.01.T01 AT1G33240 44.318 88 47 2 119 205 435 521 3.13e-15 79.0
MsG0180005038.01.T01 AT1G33240 44.318 88 47 2 119 205 396 482 4.08e-15 78.6
MsG0180005038.01.T01 AT5G28300 37.288 118 56 5 103 209 449 559 4.45e-13 72.0

Find 115 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGGCTCTTACTCTTATT+TGG 0.155961 1:+86071589 None:intergenic
TTGTTGTATCATTTGCTTCT+TGG 0.177243 1:+86071572 None:intergenic
TGCATTTCTTTCCACTTCTT+TGG 0.203428 1:+86072280 None:intergenic
AGGATAATGGCTGAGGAATT+TGG 0.204963 1:-86072306 MsG0180005038.01.T01:CDS
CCTTGTGGAATGAAATTTCT+AGG 0.236619 1:-86073320 MsG0180005038.01.T01:intron
GAACATCAAGTAAGAGAAAA+AGG 0.239292 1:-86071460 MsG0180005038.01.T01:CDS
AGGTGAAAGGATGGTTTATA+TGG 0.259177 1:-86071407 MsG0180005038.01.T01:CDS
TTTGGTTCTGAGCATGAAAA+AGG 0.260495 1:-86071205 MsG0180005038.01.T01:three_prime_UTR
GATATTTGGATGATGGAGTT+TGG 0.262012 1:-86071438 MsG0180005038.01.T01:CDS
AAACACAAGGCCTTGGTGTT+TGG 0.270837 1:-86071299 MsG0180005038.01.T01:CDS
GAGCTGAGTGCAAGAAAATA+TGG 0.284773 1:-86071369 MsG0180005038.01.T01:CDS
AGAGAAGGGTGAAGAAGAAT+TGG 0.303432 1:+86073842 None:intergenic
AACACAAGGCCTTGGTGTTT+GGG 0.305639 1:-86071298 MsG0180005038.01.T01:CDS
TCTACTAGCTTTACCTTCCT+TGG 0.314459 1:+86072218 None:intergenic
GATCTTCTTGTTTAGGATAA+TGG 0.314988 1:-86072319 MsG0180005038.01.T01:intron
TGGTTTATATGGGATTTAAT+AGG 0.331668 1:-86071396 MsG0180005038.01.T01:CDS
ATAGGGTCATAGGAATAATT+TGG 0.333734 1:+86073636 None:intergenic
ATCAAGAAATACATGAACTT+TGG 0.336932 1:-86071696 MsG0180005038.01.T01:CDS
GGATAATGGCTGAGGAATTT+GGG 0.344397 1:-86072305 MsG0180005038.01.T01:CDS
GGGTCATTGACTTGCAAGTT+TGG 0.355678 1:-86071184 MsG0180005038.01.T01:three_prime_UTR
GGTTTAGAAACTTCTGATAA+AGG 0.359679 1:-86073459 MsG0180005038.01.T01:CDS
AAAACATCACCAACTATCAT+AGG 0.369956 1:+86073618 None:intergenic
GAGAAGATGAGTGACCTATA+TGG 0.371968 1:-86073765 MsG0180005038.01.T01:exon
ATATTTGGATGATGGAGTTT+GGG 0.376772 1:-86071437 MsG0180005038.01.T01:CDS
GATGGAGTTTGGGATGAAAT+AGG 0.383462 1:-86071427 MsG0180005038.01.T01:CDS
TCAAGAAATACATGAACTTT+GGG 0.384682 1:-86071695 MsG0180005038.01.T01:CDS
GTAGCAACAAAGGAAGCATT+TGG 0.401281 1:+86072099 None:intergenic
GCAGCTATAGTGGTATTTGT+AGG 0.401800 1:+86073543 None:intergenic
GAAGTTGTAAGAAAACATAT+TGG 0.406391 1:-86071628 MsG0180005038.01.T01:CDS
TCCTATGACCCTATGATAGT+TGG 0.417353 1:-86073627 MsG0180005038.01.T01:CDS
AAGTTGTAAGAAAACATATT+GGG 0.418479 1:-86071627 MsG0180005038.01.T01:CDS
TAGCAACAAAGGAAGCATTT+GGG 0.426061 1:+86072100 None:intergenic
GAGGCATGAGAGTTTGTGTT+TGG 0.435521 1:+86072141 None:intergenic
GGGTGAAGAAGAATTGGATA+TGG 0.436078 1:+86073848 None:intergenic
TTTCAAATTTGATACAACTA+AGG 0.436534 1:-86071492 MsG0180005038.01.T01:CDS
GAACCACCACCTTGTTTGTA+TGG 0.437886 1:-86073681 MsG0180005038.01.T01:CDS
AGAAAGGGCAAAGTGGTCAT+AGG 0.438060 1:-86071894 MsG0180005038.01.T01:CDS
ATATTAGTATGTCTCTTAGA+AGG 0.438578 1:-86071342 MsG0180005038.01.T01:CDS
TATATGGGATTTAATAGGAA+TGG 0.452119 1:-86071391 MsG0180005038.01.T01:CDS
GATCCTCCGGTAGCCCATAT+AGG 0.456344 1:+86073751 None:intergenic
ACCAACTATCATAGGGTCAT+AGG 0.456713 1:+86073626 None:intergenic
ATATTATCCACACTTTCAAA+AGG 0.458934 1:+86071538 None:intergenic
GCTTCTACTGCATTCTGTGT+AGG 0.459654 1:-86073480 MsG0180005038.01.T01:CDS
TATTCATAGATGGACAGAAA+TGG 0.466542 1:-86071518 MsG0180005038.01.T01:CDS
AGAAGATGAGTGACCTATAT+GGG 0.473607 1:-86073764 MsG0180005038.01.T01:exon
ATTAACCAAGAAAATACTAA+TGG 0.483532 1:-86072057 MsG0180005038.01.T01:CDS
ATCAACCGCCGGAGATCCTC+CGG 0.484296 1:+86073738 None:intergenic
TTATTGAGACTCAAGATGCT+TGG 0.485535 1:-86071810 MsG0180005038.01.T01:CDS
ATGAAGTCGTCGAAGGAGAA+AGG 0.490837 1:-86071910 MsG0180005038.01.T01:CDS
AAACAAGGTGGTGGTTCTGC+TGG 0.491751 1:+86073687 None:intergenic
GGTGAAAGGATGGTTTATAT+GGG 0.497182 1:-86071406 MsG0180005038.01.T01:CDS
GGATGAAATAGGTGAAAGGA+TGG 0.499715 1:-86071416 MsG0180005038.01.T01:CDS
GTGTGGATAATATTCATAGA+TGG 0.500320 1:-86071528 MsG0180005038.01.T01:CDS
CTTGTTTAGGATAATGGCTG+AGG 0.502416 1:-86072313 MsG0180005038.01.T01:intron
ATAGGAGGGCAAGGAAAAGT+TGG 0.504848 1:-86071876 MsG0180005038.01.T01:CDS
ACTTCTGATAAAGGATGGCT+TGG 0.509259 1:-86073450 MsG0180005038.01.T01:CDS
TATTATCCACACTTTCAAAA+GGG 0.515340 1:+86071539 None:intergenic
TTGATTCATGTAACAACAGA+TGG 0.515630 1:-86073422 MsG0180005038.01.T01:CDS
TAGAAACTTCTGATAAAGGA+TGG 0.515925 1:-86073455 MsG0180005038.01.T01:CDS
CAGCTATAGTGGTATTTGTA+GGG 0.519351 1:+86073544 None:intergenic
TAGCATCAAAGGAAGAAGAA+AGG 0.522634 1:-86071744 MsG0180005038.01.T01:CDS
TGAGACTCAAGATGCTTGGA+TGG 0.522893 1:-86071806 MsG0180005038.01.T01:CDS
TGGTATGAAACTGAAATGAA+AGG 0.527671 1:+86073913 None:intergenic
AGACAGCTTGAAGCAATATG+TGG 0.533898 1:-86072168 MsG0180005038.01.T01:CDS
TGAAGTCGTCGAAGGAGAAA+GGG 0.536001 1:-86071909 MsG0180005038.01.T01:CDS
TTAGACTTTGTGAATACTTG+TGG 0.538073 1:+86072010 None:intergenic
AGAACAAGAGATAGCATCAA+AGG 0.542656 1:-86071755 MsG0180005038.01.T01:CDS
AAACTGAAATGAAAGGAGAC+AGG 0.545586 1:+86073920 None:intergenic
GGAAGAGAAAAGAGTCAATG+AGG 0.550829 1:-86071723 MsG0180005038.01.T01:CDS
AGAGAAAGAGTCTCTTGTCT+AGG 0.553492 1:+86073399 None:intergenic
TCATCTATGTAGCTATAGCT+AGG 0.558673 1:+86073980 None:intergenic
ATGGGCTACCGGAGGATCTC+CGG 0.559641 1:-86073746 MsG0180005038.01.T01:CDS
AAACATCACCAACTATCATA+GGG 0.561437 1:+86073619 None:intergenic
TTGAGTTTGAGTAGCAACAA+AGG 0.562015 1:+86072089 None:intergenic
AAGGGCAAAGTGGTCATAGG+AGG 0.562963 1:-86071891 MsG0180005038.01.T01:CDS
GAGTGACCTATATGGGCTAC+CGG 0.564245 1:-86073757 MsG0180005038.01.T01:CDS
GGTATTTGTAGGGTTAACAG+TGG 0.564956 1:+86073554 None:intergenic
GGTAAAGCTAGTAGACAAGA+TGG 0.568681 1:-86072210 MsG0180005038.01.T01:CDS
CCTAGAAATTTCATTCCACA+AGG 0.573860 1:+86073320 None:intergenic
TCATAGGAATAATTTGGTGG+AGG 0.577820 1:+86073642 None:intergenic
TTTAAGACTAGCGGTAGACT+CGG 0.581161 1:-86073945 MsG0180005038.01.T01:five_prime_UTR
GAATTTGGGTACCAAAGAAG+TGG 0.582190 1:-86072291 MsG0180005038.01.T01:CDS
CAGTGGAGGAATAGTCATAG+TGG 0.586600 1:+86073571 None:intergenic
TTGATGATGTTATCAACCGC+CGG 0.588660 1:+86073727 None:intergenic
AGGGCAAGGAAAAGTTGGAG+AGG 0.591096 1:-86071871 MsG0180005038.01.T01:CDS
ATTTGTAGGGTTAACAGTGG+AGG 0.594970 1:+86073557 None:intergenic
AGCTGAGTGCAAGAAAATAT+GGG 0.595363 1:-86071368 MsG0180005038.01.T01:CDS
AGCAACAAAGGAAGCATTTG+GGG 0.599234 1:+86072101 None:intergenic
TTTGGGATGAAATAGGTGAA+AGG 0.600563 1:-86071420 MsG0180005038.01.T01:CDS
TATTACAAGAAGACCAAGGA+AGG 0.601931 1:-86072231 MsG0180005038.01.T01:CDS
GGGTCATAGGAATAATTTGG+TGG 0.603660 1:+86073639 None:intergenic
AAGTTGGAGAGGTAAAGTTG+AGG 0.607935 1:-86071860 MsG0180005038.01.T01:CDS
ATAATCAGAAAGCACCCTTG+TGG 0.619380 1:-86073335 MsG0180005038.01.T01:CDS
AGGTGTGTAAGACTCTAGCT+AGG 0.621926 1:-86071145 MsG0180005038.01.T01:three_prime_UTR
AAAGTGGTCATAGGAGGGCA+AGG 0.623960 1:-86071885 MsG0180005038.01.T01:CDS
GGTGAGTGAAGCTACTACGA+GGG 0.624158 1:+86073592 None:intergenic
CTTAGAAGGACAGTGGACTG+TGG 0.637596 1:-86071328 MsG0180005038.01.T01:CDS
AAGAAGTGGAAAGAAATGCA+AGG 0.641850 1:-86072277 MsG0180005038.01.T01:CDS
AGGGCAAAGTGGTCATAGGA+GGG 0.643035 1:-86071890 MsG0180005038.01.T01:CDS
TTGGTTCATTGAAAATCACA+AGG 0.643246 1:-86071165 MsG0180005038.01.T01:three_prime_UTR
CCACCATACAAACAAGGTGG+TGG 0.656823 1:+86073678 None:intergenic
ACACACTATGAAGTCGTCGA+AGG 0.660577 1:-86071917 MsG0180005038.01.T01:CDS
TATGTCTCTTAGAAGGACAG+TGG 0.662720 1:-86071335 MsG0180005038.01.T01:CDS
CTCATCTGAAAACAACGATG+AGG 0.668787 1:-86071956 MsG0180005038.01.T01:CDS
CCACCACCTTGTTTGTATGG+TGG 0.671674 1:-86073678 MsG0180005038.01.T01:CDS
AGCTTAAGTCCCAAACACCA+AGG 0.671681 1:+86071289 None:intergenic
AATTTGATACAACTAAGGAG+TGG 0.674782 1:-86071487 MsG0180005038.01.T01:CDS
TCGAAGGAGAAAGGGCAAAG+TGG 0.682624 1:-86071901 MsG0180005038.01.T01:CDS
GCAACACCACCATACAAACA+AGG 0.686159 1:+86073672 None:intergenic
GGCTACCGGAGGATCTCCGG+CGG 0.699131 1:-86073743 MsG0180005038.01.T01:CDS
TGACCTATATGGGCTACCGG+AGG 0.701402 1:-86073754 MsG0180005038.01.T01:CDS
CAAGTATTACAAGAAGACCA+AGG 0.709647 1:-86072235 MsG0180005038.01.T01:CDS
CTAGAAATTTCATTCCACAA+GGG 0.711484 1:+86073321 None:intergenic
TGGTGAGTGAAGCTACTACG+AGG 0.746302 1:+86073591 None:intergenic
ACACCACCATACAAACAAGG+TGG 0.760464 1:+86073675 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTTTAATTAATTTTT+TGG + Chr1:86071115-86071134 None:intergenic 0.0%
!! TTAAATTTAAATTGTAGTTA+CGG - Chr1:86072385-86072404 MsG0180005038.01.T01:intron 10.0%
!!! TGTTTTTTTTAAGTTTAAAT+AGG - Chr1:86073888-86073907 MsG0180005038.01.T01:five_prime_UTR 10.0%
!!! TTTTATTTCACTTTTTTTTT+TGG - Chr1:86071748-86071767 MsG0180005038.01.T01:CDS 10.0%
!! ATCATAATAAAAAAAACACA+TGG + Chr1:86071861-86071880 None:intergenic 15.0%
!! TTAAACTTAAAAAAAACACA+TGG + Chr1:86073886-86073905 None:intergenic 15.0%
!! AAGTTGTAAGAAAACATATT+GGG - Chr1:86073378-86073397 MsG0180005038.01.T01:CDS 20.0%
!! ATTAACCAAGAAAATACTAA+TGG - Chr1:86072948-86072967 MsG0180005038.01.T01:intron 20.0%
!! TTAGTGTCTTAATTAATTAC+TGG - Chr1:86071714-86071733 MsG0180005038.01.T01:CDS 20.0%
!! TTTCAAATTTGATACAACTA+AGG - Chr1:86073513-86073532 MsG0180005038.01.T01:CDS 20.0%
!!! TTTTACATTAATTGTGTCAA+AGG + Chr1:86073757-86073776 None:intergenic 20.0%
!!! TTTTGTTTGAAAATATCATG+TGG - Chr1:86072220-86072239 MsG0180005038.01.T01:CDS 20.0%
! AGTAAGAGAAAAAGGATATT+TGG - Chr1:86073553-86073572 MsG0180005038.01.T01:CDS 25.0%
! AGTATATACAAAACAAAGAC+AGG + Chr1:86072011-86072030 None:intergenic 25.0%
! ATATTAGTATGTCTCTTAGA+AGG - Chr1:86073663-86073682 MsG0180005038.01.T01:CDS 25.0%
! ATATTATCCACACTTTCAAA+AGG + Chr1:86073470-86073489 None:intergenic 25.0%
! ATCAAGAAATACATGAACTT+TGG - Chr1:86073309-86073328 MsG0180005038.01.T01:intron 25.0%
! CAATGAATGATTTAGTATCA+TGG + Chr1:86071955-86071974 None:intergenic 25.0%
! GAAGTTGTAAGAAAACATAT+TGG - Chr1:86073377-86073396 MsG0180005038.01.T01:CDS 25.0%
! GACAAAAACGAAAATTATCA+TGG + Chr1:86071813-86071832 None:intergenic 25.0%
! TATATGGGATTTAATAGGAA+TGG - Chr1:86073614-86073633 MsG0180005038.01.T01:CDS 25.0%
! TATTATCCACACTTTCAAAA+GGG + Chr1:86073469-86073488 None:intergenic 25.0%
! TCAAGAAATACATGAACTTT+GGG - Chr1:86073310-86073329 MsG0180005038.01.T01:intron 25.0%
! TGGTTTATATGGGATTTAAT+AGG - Chr1:86073609-86073628 MsG0180005038.01.T01:CDS 25.0%
!! ATTTTCTTGGTTAATTGTGA+AGG + Chr1:86072943-86072962 None:intergenic 25.0%
AAAACATCACCAACTATCAT+AGG + Chr1:86071390-86071409 None:intergenic 30.0%
AAACATCACCAACTATCATA+GGG + Chr1:86071389-86071408 None:intergenic 30.0%
AAATCAAGTGATACTGTGAT+AGG + Chr1:86072196-86072215 None:intergenic 30.0%
AATTTGATACAACTAAGGAG+TGG - Chr1:86073518-86073537 MsG0180005038.01.T01:CDS 30.0%
ATAGGGTCATAGGAATAATT+TGG + Chr1:86071372-86071391 None:intergenic 30.0%
CTAGAAATTTCATTCCACAA+GGG + Chr1:86071687-86071706 None:intergenic 30.0%
GAAAAAGGATATTTGGATGA+TGG - Chr1:86073560-86073579 MsG0180005038.01.T01:CDS 30.0%
GAACATCAAGTAAGAGAAAA+AGG - Chr1:86073545-86073564 MsG0180005038.01.T01:CDS 30.0%
GATACTAAATCATTCATTGC+AGG - Chr1:86071956-86071975 MsG0180005038.01.T01:CDS 30.0%
GGTTTAGAAACTTCTGATAA+AGG - Chr1:86071546-86071565 MsG0180005038.01.T01:CDS 30.0%
GTGATTGTAATTGAAACCTT+CGG + Chr1:86072278-86072297 None:intergenic 30.0%
GTGTGGATAATATTCATAGA+TGG - Chr1:86073477-86073496 MsG0180005038.01.T01:CDS 30.0%
TAGAAACTTCTGATAAAGGA+TGG - Chr1:86071550-86071569 MsG0180005038.01.T01:CDS 30.0%
TATTCATAGATGGACAGAAA+TGG - Chr1:86073487-86073506 MsG0180005038.01.T01:CDS 30.0%
TGATTGTAATTGAAACCTTC+GGG + Chr1:86072277-86072296 None:intergenic 30.0%
TGGTATGAAACTGAAATGAA+AGG + Chr1:86071095-86071114 None:intergenic 30.0%
TTAGACTTTGTGAATACTTG+TGG + Chr1:86072998-86073017 None:intergenic 30.0%
TTGAAAATATCATGTGGTCT+TGG - Chr1:86072226-86072245 MsG0180005038.01.T01:CDS 30.0%
TTGATTCATGTAACAACAGA+TGG - Chr1:86071583-86071602 MsG0180005038.01.T01:CDS 30.0%
TTGGTTCATTGAAAATCACA+AGG - Chr1:86073840-86073859 MsG0180005038.01.T01:five_prime_UTR 30.0%
TTGTTGTATCATTTGCTTCT+TGG + Chr1:86073436-86073455 None:intergenic 30.0%
! CAACACCATTAGTATTTTCT+TGG + Chr1:86072956-86072975 None:intergenic 30.0%
! CTTTTGTGATTGAAAATGAC+AGG - Chr1:86071780-86071799 MsG0180005038.01.T01:CDS 30.0%
! GATCTTCTTGTTTAGGATAA+TGG - Chr1:86072686-86072705 MsG0180005038.01.T01:intron 30.0%
! TGTTAGTGTTTTGTACTGAA+AGG + Chr1:86072162-86072181 None:intergenic 30.0%
!! AATAGGTTTTATGTGTACGT+AGG - Chr1:86073905-86073924 MsG0180005038.01.T01:five_prime_UTR 30.0%
!! ATATTTGGATGATGGAGTTT+GGG - Chr1:86073568-86073587 MsG0180005038.01.T01:CDS 30.0%
!! GGTAATTTTGTCTAAAGTTG+AGG + Chr1:86072886-86072905 None:intergenic 30.0%
!!! AGTCTAACTTTTAAGACTAG+CGG - Chr1:86071051-86071070 MsG0180005038.01.T01:three_prime_UTR 30.0%
!!! CTGTCATTTTCAATCACAAA+AGG + Chr1:86071782-86071801 None:intergenic 30.0%
AAACTGAAATGAAAGGAGAC+AGG + Chr1:86071088-86071107 None:intergenic 35.0%
AAGAAGTGGAAAGAAATGCA+AGG - Chr1:86072728-86072747 MsG0180005038.01.T01:intron 35.0%
AGAACAAGAGATAGCATCAA+AGG - Chr1:86073250-86073269 MsG0180005038.01.T01:intron 35.0%
AGAAGATGAGTGACCTATAT+GGG - Chr1:86071241-86071260 MsG0180005038.01.T01:three_prime_UTR 35.0%
AGCTGAGTGCAAGAAAATAT+GGG - Chr1:86073637-86073656 MsG0180005038.01.T01:CDS 35.0%
AGGTGAAAGGATGGTTTATA+TGG - Chr1:86073598-86073617 MsG0180005038.01.T01:CDS 35.0%
CAAGTATTACAAGAAGACCA+AGG - Chr1:86072770-86072789 MsG0180005038.01.T01:intron 35.0%
CAGCTATAGTGGTATTTGTA+GGG + Chr1:86071464-86071483 None:intergenic 35.0%
CCTACAATGCAAAGATTTGT+GGG + Chr1:86072329-86072348 None:intergenic 35.0%
CCTAGAAATTTCATTCCACA+AGG + Chr1:86071688-86071707 None:intergenic 35.0%
CCTTGTGGAATGAAATTTCT+AGG - Chr1:86071685-86071704 MsG0180005038.01.T01:CDS 35.0%
GCACAAAGCTGTAATAAATG+TGG - Chr1:86072494-86072513 MsG0180005038.01.T01:intron 35.0%
GGTGAAAGGATGGTTTATAT+GGG - Chr1:86073599-86073618 MsG0180005038.01.T01:CDS 35.0%
TAGCATCAAAGGAAGAAGAA+AGG - Chr1:86073261-86073280 MsG0180005038.01.T01:intron 35.0%
TATTACAAGAAGACCAAGGA+AGG - Chr1:86072774-86072793 MsG0180005038.01.T01:intron 35.0%
TCATCTATGTAGCTATAGCT+AGG + Chr1:86071028-86071047 None:intergenic 35.0%
TCCTACAATGCAAAGATTTG+TGG + Chr1:86072330-86072349 None:intergenic 35.0%
TGCATTTCTTTCCACTTCTT+TGG + Chr1:86072728-86072747 None:intergenic 35.0%
TTATTGAGACTCAAGATGCT+TGG - Chr1:86073195-86073214 MsG0180005038.01.T01:intron 35.0%
TTCATTGCAGGTGCAAATTA+AGG - Chr1:86071968-86071987 MsG0180005038.01.T01:CDS 35.0%
TTGAGTTTGAGTAGCAACAA+AGG + Chr1:86072919-86072938 None:intergenic 35.0%
TTGCATTGTAGGAGATCAAA+GGG - Chr1:86072337-86072356 MsG0180005038.01.T01:intron 35.0%
TTTGCATTGTAGGAGATCAA+AGG - Chr1:86072336-86072355 MsG0180005038.01.T01:intron 35.0%
TTTGGGCTAAAGAAAAAGCA+TGG - Chr1:86073327-86073346 MsG0180005038.01.T01:CDS 35.0%
! GCTTTGTGATCTTCTTGTTT+AGG - Chr1:86072679-86072698 MsG0180005038.01.T01:intron 35.0%
! TAGTACAACTTTTTACCCGA+AGG - Chr1:86072259-86072278 MsG0180005038.01.T01:CDS 35.0%
! TCATAGGAATAATTTGGTGG+AGG + Chr1:86071366-86071385 None:intergenic 35.0%
! TCTTGGCTCTTACTCTTATT+TGG + Chr1:86073419-86073438 None:intergenic 35.0%
! TTGGGCTAAAGAAAAAGCAT+GGG - Chr1:86073328-86073347 MsG0180005038.01.T01:CDS 35.0%
! TTTGGGATGAAATAGGTGAA+AGG - Chr1:86073585-86073604 MsG0180005038.01.T01:CDS 35.0%
!! GATATTTGGATGATGGAGTT+TGG - Chr1:86073567-86073586 MsG0180005038.01.T01:CDS 35.0%
!! TAGCAACAAAGGAAGCATTT+GGG + Chr1:86072908-86072927 None:intergenic 35.0%
!! TGAATACCCTTTTGAAAGTG+TGG - Chr1:86073460-86073479 MsG0180005038.01.T01:CDS 35.0%
!! TTGGTTCTGAGCATGAAAAA+GGG - Chr1:86073801-86073820 MsG0180005038.01.T01:five_prime_UTR 35.0%
!! TTTGGTTCTGAGCATGAAAA+AGG - Chr1:86073800-86073819 MsG0180005038.01.T01:five_prime_UTR 35.0%
!!! GCACATGAATCAGAGTTTTT+TGG - Chr1:86073782-86073801 MsG0180005038.01.T01:five_prime_UTR 35.0%
AAGTTGGAGAGGTAAAGTTG+AGG - Chr1:86073145-86073164 MsG0180005038.01.T01:intron 40.0%
ACCAACTATCATAGGGTCAT+AGG + Chr1:86071382-86071401 None:intergenic 40.0%
ACTGTGGAGTCAAAAACACA+AGG - Chr1:86073693-86073712 MsG0180005038.01.T01:CDS 40.0%
ACTTCTGATAAAGGATGGCT+TGG - Chr1:86071555-86071574 MsG0180005038.01.T01:CDS 40.0%
AGACAGCTTGAAGCAATATG+TGG - Chr1:86072837-86072856 MsG0180005038.01.T01:intron 40.0%
AGAGAAAGAGTCTCTTGTCT+AGG + Chr1:86071609-86071628 None:intergenic 40.0%
AGAGAAGGGTGAAGAAGAAT+TGG + Chr1:86071166-86071185 None:intergenic 40.0%
ATTTGTAGGGTTAACAGTGG+AGG + Chr1:86071451-86071470 None:intergenic 40.0%
CCCACAAATCTTTGCATTGT+AGG - Chr1:86072326-86072345 MsG0180005038.01.T01:intron 40.0%
CTCATCTGAAAACAACGATG+AGG - Chr1:86073049-86073068 MsG0180005038.01.T01:intron 40.0%
GAATTTGGGTACCAAAGAAG+TGG - Chr1:86072714-86072733 MsG0180005038.01.T01:intron 40.0%
GAGAAGATGAGTGACCTATA+TGG - Chr1:86071240-86071259 MsG0180005038.01.T01:three_prime_UTR 40.0%
GAGCTGAGTGCAAGAAAATA+TGG - Chr1:86073636-86073655 MsG0180005038.01.T01:CDS 40.0%
GCAGCTATAGTGGTATTTGT+AGG + Chr1:86071465-86071484 None:intergenic 40.0%
GCTGAGCGAATTAGGTTAAT+AGG + Chr1:86072039-86072058 None:intergenic 40.0%
GGAAGAGAAAAGAGTCAATG+AGG - Chr1:86073282-86073301 MsG0180005038.01.T01:intron 40.0%
GGATGAAATAGGTGAAAGGA+TGG - Chr1:86073589-86073608 MsG0180005038.01.T01:CDS 40.0%
GGGTCATAGGAATAATTTGG+TGG + Chr1:86071369-86071388 None:intergenic 40.0%
GGGTGAAGAAGAATTGGATA+TGG + Chr1:86071160-86071179 None:intergenic 40.0%
GGTAAAGCTAGTAGACAAGA+TGG - Chr1:86072795-86072814 MsG0180005038.01.T01:intron 40.0%
GGTATTTGTAGGGTTAACAG+TGG + Chr1:86071454-86071473 None:intergenic 40.0%
GTGACTATACTTACTTGCAC+TGG - Chr1:86071922-86071941 MsG0180005038.01.T01:CDS 40.0%
TATGTCTCTTAGAAGGACAG+TGG - Chr1:86073670-86073689 MsG0180005038.01.T01:CDS 40.0%
TCCTATGACCCTATGATAGT+TGG - Chr1:86071378-86071397 MsG0180005038.01.T01:CDS 40.0%
! AGGATAATGGCTGAGGAATT+TGG - Chr1:86072699-86072718 MsG0180005038.01.T01:intron 40.0%
! CTTGTTTAGGATAATGGCTG+AGG - Chr1:86072692-86072711 MsG0180005038.01.T01:intron 40.0%
! GATGGAGTTTGGGATGAAAT+AGG - Chr1:86073578-86073597 MsG0180005038.01.T01:CDS 40.0%
! GGATAATGGCTGAGGAATTT+GGG - Chr1:86072700-86072719 MsG0180005038.01.T01:intron 40.0%
! TTTAAGACTAGCGGTAGACT+CGG - Chr1:86071060-86071079 MsG0180005038.01.T01:three_prime_UTR 40.0%
!! AGCAACAAAGGAAGCATTTG+GGG + Chr1:86072907-86072926 None:intergenic 40.0%
!! ATAATCAGAAAGCACCCTTG+TGG - Chr1:86071670-86071689 MsG0180005038.01.T01:CDS 40.0%
!! CTCATCGTTGTTTTCAGATG+AGG + Chr1:86073051-86073070 None:intergenic 40.0%
!! GTAGCAACAAAGGAAGCATT+TGG + Chr1:86072909-86072928 None:intergenic 40.0%
!! TCTACTAGCTTTACCTTCCT+TGG + Chr1:86072790-86072809 None:intergenic 40.0%
!! TTGATGATGTTATCAACCGC+CGG + Chr1:86071281-86071300 None:intergenic 40.0%
AAACTCCAATAGCCCTAGCT+AGG + Chr1:86072064-86072083 None:intergenic 45.0%
ACACACTATGAAGTCGTCGA+AGG - Chr1:86073088-86073107 MsG0180005038.01.T01:intron 45.0%
ACACCACCATACAAACAAGG+TGG + Chr1:86071333-86071352 None:intergenic 45.0%
AGAAAGGGCAAAGTGGTCAT+AGG - Chr1:86073111-86073130 MsG0180005038.01.T01:intron 45.0%
AGAGAGAGAGAGAGAGAGAA+GGG + Chr1:86071180-86071199 None:intergenic 45.0%
AGCTTAAGTCCCAAACACCA+AGG + Chr1:86073719-86073738 None:intergenic 45.0%
AGGTGTGTAAGACTCTAGCT+AGG - Chr1:86073860-86073879 MsG0180005038.01.T01:five_prime_UTR 45.0%
ATAGGAGGGCAAGGAAAAGT+TGG - Chr1:86073129-86073148 MsG0180005038.01.T01:intron 45.0%
ATGAAGTCGTCGAAGGAGAA+AGG - Chr1:86073095-86073114 MsG0180005038.01.T01:intron 45.0%
CAGTGGAGGAATAGTCATAG+TGG + Chr1:86071437-86071456 None:intergenic 45.0%
GAGGCATGAGAGTTTGTGTT+TGG + Chr1:86072867-86072886 None:intergenic 45.0%
GAGTCAAAAACACAAGGCCT+TGG - Chr1:86073699-86073718 MsG0180005038.01.T01:CDS 45.0%
GCAACACCACCATACAAACA+AGG + Chr1:86071336-86071355 None:intergenic 45.0%
GCTTCTACTGCATTCTGTGT+AGG - Chr1:86071525-86071544 MsG0180005038.01.T01:CDS 45.0%
TGAAGTCGTCGAAGGAGAAA+GGG - Chr1:86073096-86073115 MsG0180005038.01.T01:intron 45.0%
TGAGACTCAAGATGCTTGGA+TGG - Chr1:86073199-86073218 MsG0180005038.01.T01:intron 45.0%
! GAACCACCACCTTGTTTGTA+TGG - Chr1:86071324-86071343 MsG0180005038.01.T01:CDS 45.0%
!! AAACACAAGGCCTTGGTGTT+TGG - Chr1:86073706-86073725 MsG0180005038.01.T01:CDS 45.0%
!! AACACAAGGCCTTGGTGTTT+GGG - Chr1:86073707-86073726 MsG0180005038.01.T01:CDS 45.0%
!! GGGTCATTGACTTGCAAGTT+TGG - Chr1:86073821-86073840 MsG0180005038.01.T01:five_prime_UTR 45.0%
AAAGTGGTCATAGGAGGGCA+AGG - Chr1:86073120-86073139 MsG0180005038.01.T01:intron 50.0%
AAGGGCAAAGTGGTCATAGG+AGG - Chr1:86073114-86073133 MsG0180005038.01.T01:intron 50.0%
AGCTACCTAGCTAGGGCTAT+TGG - Chr1:86072056-86072075 MsG0180005038.01.T01:CDS 50.0%
AGGGCAAAGTGGTCATAGGA+GGG - Chr1:86073115-86073134 MsG0180005038.01.T01:intron 50.0%
AGGGCAAGGAAAAGTTGGAG+AGG - Chr1:86073134-86073153 MsG0180005038.01.T01:intron 50.0%
ATTCGCTCAGCTACCTAGCT+AGG - Chr1:86072048-86072067 MsG0180005038.01.T01:CDS 50.0%
CCACCATACAAACAAGGTGG+TGG + Chr1:86071330-86071349 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+AGG + Chr1:86071181-86071200 None:intergenic 50.0%
GCTAGGTAGCTGAGCGAATT+AGG + Chr1:86072047-86072066 None:intergenic 50.0%
GGTGAGTGAAGCTACTACGA+GGG + Chr1:86071416-86071435 None:intergenic 50.0%
TCGAAGGAGAAAGGGCAAAG+TGG - Chr1:86073104-86073123 MsG0180005038.01.T01:intron 50.0%
TGGTGAGTGAAGCTACTACG+AGG + Chr1:86071417-86071436 None:intergenic 50.0%
TTCGCTCAGCTACCTAGCTA+GGG - Chr1:86072049-86072068 MsG0180005038.01.T01:CDS 50.0%
! AAACAAGGTGGTGGTTCTGC+TGG + Chr1:86071321-86071340 None:intergenic 50.0%
! CCACCACCTTGTTTGTATGG+TGG - Chr1:86071327-86071346 MsG0180005038.01.T01:CDS 50.0%
! GAGTGACCTATATGGGCTAC+CGG - Chr1:86071248-86071267 MsG0180005038.01.T01:exon 50.0%
!! CTTAGAAGGACAGTGGACTG+TGG - Chr1:86073677-86073696 MsG0180005038.01.T01:CDS 50.0%
AGCAGCAGCAGCAGCTATAG+TGG + Chr1:86071475-86071494 None:intergenic 55.0%
GATCCTCCGGTAGCCCATAT+AGG + Chr1:86071257-86071276 None:intergenic 55.0%
! TGACCTATATGGGCTACCGG+AGG - Chr1:86071251-86071270 MsG0180005038.01.T01:exon 55.0%
ATCAACCGCCGGAGATCCTC+CGG + Chr1:86071270-86071289 None:intergenic 60.0%
! ATGGGCTACCGGAGGATCTC+CGG - Chr1:86071259-86071278 MsG0180005038.01.T01:exon 60.0%
GGCTACCGGAGGATCTCCGG+CGG - Chr1:86071262-86071281 MsG0180005038.01.T01:exon 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 86071019 86074008 86071019 ID=MsG0180005038.01;Name=MsG0180005038.01
Chr1 mRNA 86071019 86074008 86071019 ID=MsG0180005038.01.T01;Parent=MsG0180005038.01;Name=MsG0180005038.01.T01;_AED=0.18;_eAED=0.18;_QI=227|1|1|1|1|1|2|248|506
Chr1 exon 86071019 86072326 86071019 ID=MsG0180005038.01.T01:exon:28371;Parent=MsG0180005038.01.T01
Chr1 exon 86073321 86074008 86073321 ID=MsG0180005038.01.T01:exon:28370;Parent=MsG0180005038.01.T01
Chr1 five_prime_UTR 86073782 86074008 86073782 ID=MsG0180005038.01.T01:five_prime_utr;Parent=MsG0180005038.01.T01
Chr1 CDS 86073321 86073781 86073321 ID=MsG0180005038.01.T01:cds;Parent=MsG0180005038.01.T01
Chr1 CDS 86071267 86072326 86071267 ID=MsG0180005038.01.T01:cds;Parent=MsG0180005038.01.T01
Chr1 three_prime_UTR 86071019 86071266 86071019 ID=MsG0180005038.01.T01:three_prime_utr;Parent=MsG0180005038.01.T01
Gene Sequence

>MsG0180005038.01.T01

ATGAGTGACCTATATGGGCTACCGGAGGATCTCCGGCGGTTGATAACATCATCAAGAAACACTACACATCTACCAGCAGAACCACCACCTTGTTTGTATGGTGGTGTTGCTACTTTTCCTCCACCAAATTATTCCTATGACCCTATGATAGTTGGTGATGTTTTCTACCCTCGTAGTAGCTTCACTCACCACTATGACTATTCCTCCACTGTTAACCCTACAAATACCACTATAGCTGCTGCTGCTGCTGCAGCAGCTTCTAATTCAGATCATGCTACTGCTTCTACTGCATTCTGTGTAGGTTTAGAAACTTCTGATAAAGGATGGCTTGGTAACTTTGATTCATGTAACAACAGATGGCCTAGACAAGAGACTCTTTCTCTTCTTGAAATCAGATCTCGTCTTGATTCTAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAGGAAAAATTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGTAAAGCTAGTAGACAAGATGGTAAGCACTATAGATTTTTCAGACAGCTTGAAGCAATATGTGGAGAACCAAACACAAACTCTCATGCCTCAACTTTAGACAAAATTACCCCAAATGCTTCCTTTGTTGCTACTCAAACTCAAACCTTCACAATTAACCAAGAAAATACTAATGGTGTTGATCACAATTTGATCAATAACCACAAGTATTCACAAAGTCTAAGTTTCTCGAACTCGTCTGAATTTGAGACATCCTCATCTGAAAACAACGATGAGGATCTCTCAACTATTGCACACACTATGAAGTCGTCGAAGGAGAAAGGGCAAAGTGGTCATAGGAGGGCAAGGAAAAGTTGGAGAGGTAAAGTTGAGGAGATTGTAGATTCTCACATGAAAAATATTATTGAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGTGTTGTTGAACAAAGAGAACAAGAGATAGCATCAAAGGAAGAAGAAAGGAAGAGAAAAGAGTCAATGAGGTTTGATCAAGAAATACATGAACTTTGGGCTAAAGAAAAAGCATGGGTTGAAGCAAGAGATTCTGCATTGTTAGAAGTTGTAAGAAAACATATTGGGATACAACTTGAAGCACCAAATAAGAGTAAGAGCCAAGAAGCAAATGATACAACAAATTATGAATACCCTTTTGAAAGTGTGGATAATATTCATAGATGGACAGAAATGGAAATTTCAAATTTGATACAACTAAGGAGTGGTTTTGAACATCAAGTAAGAGAAAAAGGATATTTGGATGATGGAGTTTGGGATGAAATAGGTGAAAGGATGGTTTATATGGGATTTAATAGGAATGGAGCTGAGTGCAAGAAAATATGGGATGATATTAGTATGTCTCTTAGAAGGACAGTGGACTGTGGAGTCAAAAACACAAGGCCTTGGTGTTTGGGACTTAAGCTGACAGATGATGACGACCTTTGA
Protein sequence

>MsG0180005038.01.T01

MSDLYGLPEDLRRLITSSRNTTHLPAEPPPCLYGGVATFPPPNYSYDPMIVGDVFYPRSSFTHHYDYSSTVNPTNTTIAAAAAAAASNSDHATASTAFCVGLETSDKGWLGNFDSCNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEPNTNSHASTLDKITPNASFVATQTQTFTINQENTNGVDHNLINNHKYSQSLSFSNSSEFETSSSENNDEDLSTIAHTMKSSKEKGQSGHRRARKSWRGKVEEIVDSHMKNIIETQDAWMERMLSVVEQREQEIASKEEERKRKESMRFDQEIHELWAKEKAWVEARDSALLEVVRKHIGIQLEAPNKSKSQEANDTTNYEYPFESVDNIHRWTEMEISNLIQLRSGFEHQVREKGYLDDGVWDEIGERMVYMGFNRNGAECKKIWDDISMSLRRTVDCGVKNTRPWCLGLKLTDDDDL*