AlfalfaGEDB | MsG0180005038.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005038.01

KEGG: -
GO: -
PFAM: PF13837

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005038.01.T01	XP_013469384.1	97.041	507	8	3	1	506	1	501	0	1024

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005038.01.T01	Q9LZS0	42.455	391	176	9	119	482	119	487	1.77E-84	275

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005038.01.T01	A0A072VNQ7	97.041	507	8	3	1	506	1	501	0.0	1024

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180005038.01	MsG0580029310.01	0.808001	3.837605e-50	2.169180e-47
MsG0180005038.01	MsG0880042959.01	0.814334	1.624019e-51	1.086658e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005038.01.T01	MTR_1g492790	97.041	507	8	3	1	506	1	501	0.0	1024
MsG0180005038.01.T01	MTR_1g060990	39.461	408	181	15	10	403	27	382	9.15e-74	242
MsG0180005038.01.T01	MTR_1g098900	34.853	307	153	10	118	384	56	355	1.29e-41	158
MsG0180005038.01.T01	MTR_1g098900	40.541	111	62	3	99	208	436	543	4.98e-19	90.9
MsG0180005038.01.T01	MTR_6g035370	61.957	92	34	1	118	209	54	144	2.69e-31	128
MsG0180005038.01.T01	MTR_6g035370	44.330	97	52	2	115	210	460	555	1.18e-18	89.7
MsG0180005038.01.T01	MTR_1g098870	56.604	106	45	1	100	205	36	140	5.55e-30	124
MsG0180005038.01.T01	MTR_1g098870	47.525	101	51	2	111	210	364	463	4.35e-19	90.9
MsG0180005038.01.T01	MTR_2g026725	27.193	228	116	8	308	493	114	333	3.79e-14	74.3
MsG0180005038.01.T01	MTR_2g026725	39.785	93	54	2	114	205	257	348	2.81e-13	71.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005038.01.T01	AT5G03680	42.455	391	176	9	119	482	119	487	1.80e-85	275
MsG0180005038.01.T01	AT3G10000	38.525	366	194	11	40	400	15	354	1.18e-64	218
MsG0180005038.01.T01	AT3G10000	36.612	366	191	12	40	400	15	344	2.81e-56	195
MsG0180005038.01.T01	AT1G76890	31.696	448	215	12	115	489	37	466	1.80e-49	179
MsG0180005038.01.T01	AT1G76890	40.000	160	78	8	89	234	360	515	1.51e-19	92.4
MsG0180005038.01.T01	AT1G76880	54.701	117	46	2	98	214	46	155	8.65e-31	126
MsG0180005038.01.T01	AT1G76880	45.361	97	51	2	115	210	404	499	8.33e-18	87.0
MsG0180005038.01.T01	AT1G33240	44.318	88	47	2	119	205	435	521	2.89e-15	79.3
MsG0180005038.01.T01	AT1G33240	44.318	88	47	2	119	205	435	521	3.13e-15	79.0
MsG0180005038.01.T01	AT1G33240	44.318	88	47	2	119	205	396	482	4.08e-15	78.6

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Find 115 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATCACCAACTATCAT+AGG	0.369956	1:+86073618	None:intergenic
AAACAAGGTGGTGGTTCTGC+TGG	0.491751	1:+86073687	None:intergenic
AAACACAAGGCCTTGGTGTT+TGG	0.270837	1:-86071299	MsG0180005038.01.T01:CDS
AAACATCACCAACTATCATA+GGG	0.561437	1:+86073619	None:intergenic
AAACTGAAATGAAAGGAGAC+AGG	0.545586	1:+86073920	None:intergenic
AAAGTGGTCATAGGAGGGCA+AGG	0.623960	1:-86071885	MsG0180005038.01.T01:CDS
AACACAAGGCCTTGGTGTTT+GGG	0.305639	1:-86071298	MsG0180005038.01.T01:CDS
AAGAAGTGGAAAGAAATGCA+AGG	0.641850	1:-86072277	MsG0180005038.01.T01:CDS
AAGGGCAAAGTGGTCATAGG+AGG	0.562963	1:-86071891	MsG0180005038.01.T01:CDS
AAGTTGGAGAGGTAAAGTTG+AGG	0.607935	1:-86071860	MsG0180005038.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACATCACCAACTATCAT+AGG	+	Chr1:86071390-86071409	None:intergenic	30.0%
AAACATCACCAACTATCATA+GGG	+	Chr1:86071389-86071408	None:intergenic	30.0%
AAATCAAGTGATACTGTGAT+AGG	+	Chr1:86072196-86072215	None:intergenic	30.0%
AATTTGATACAACTAAGGAG+TGG	-	Chr1:86073518-86073537	MsG0180005038.01.T01:CDS	30.0%
ATAGGGTCATAGGAATAATT+TGG	+	Chr1:86071372-86071391	None:intergenic	30.0%
CTAGAAATTTCATTCCACAA+GGG	+	Chr1:86071687-86071706	None:intergenic	30.0%
GAAAAAGGATATTTGGATGA+TGG	-	Chr1:86073560-86073579	MsG0180005038.01.T01:CDS	30.0%
GAACATCAAGTAAGAGAAAA+AGG	-	Chr1:86073545-86073564	MsG0180005038.01.T01:CDS	30.0%
GATACTAAATCATTCATTGC+AGG	-	Chr1:86071956-86071975	MsG0180005038.01.T01:CDS	30.0%
GGTTTAGAAACTTCTGATAA+AGG	-	Chr1:86071546-86071565	MsG0180005038.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	86071019	86074008	86071019	ID=MsG0180005038.01;Name=MsG0180005038.01
Chr1	mRNA	86071019	86074008	86071019	ID=MsG0180005038.01.T01;Parent=MsG0180005038.01;Name=MsG0180005038.01.T01;_AED=0.18;_eAED=0.18;_QI=227\|1\|1\|1\|1\|1\|2\|248\|506
Chr1	exon	86071019	86072326	86071019	ID=MsG0180005038.01.T01:exon:28371;Parent=MsG0180005038.01.T01
Chr1	exon	86073321	86074008	86073321	ID=MsG0180005038.01.T01:exon:28370;Parent=MsG0180005038.01.T01
Chr1	five_prime_UTR	86073782	86074008	86073782	ID=MsG0180005038.01.T01:five_prime_utr;Parent=MsG0180005038.01.T01
Chr1	CDS	86073321	86073781	86073321	ID=MsG0180005038.01.T01:cds;Parent=MsG0180005038.01.T01
Chr1	CDS	86071267	86072326	86071267	ID=MsG0180005038.01.T01:cds;Parent=MsG0180005038.01.T01
Chr1	three_prime_UTR	86071019	86071266	86071019	ID=MsG0180005038.01.T01:three_prime_utr;Parent=MsG0180005038.01.T01

Gene Sequence

>MsG0180005038.01.T01

ATGAGTGACCTATATGGGCTACCGGAGGATCTCCGGCGGTTGATAACATCATCAAGAAACACTACACATCTACCAGCAGAACCACCACCTTGTTTGTATGGTGGTGTTGCTACTTTTCCTCCACCAAATTATTCCTATGACCCTATGATAGTTGGTGATGTTTTCTACCCTCGTAGTAGCTTCACTCACCACTATGACTATTCCTCCACTGTTAACCCTACAAATACCACTATAGCTGCTGCTGCTGCTGCAGCAGCTTCTAATTCAGATCATGCTACTGCTTCTACTGCATTCTGTGTAGGTTTAGAAACTTCTGATAAAGGATGGCTTGGTAACTTTGATTCATGTAACAACAGATGGCCTAGACAAGAGACTCTTTCTCTTCTTGAAATCAGATCTCGTCTTGATTCTAAGTTCAGAGAGAATAATCAGAAAGCACCCTTGTGGAATGAAATTTCTAGGATAATGGCTGAGGAATTTGGGTACCAAAGAAGTGGAAAGAAATGCAAGGAAAAATTTGAGAATTTGTACAAGTATTACAAGAAGACCAAGGAAGGTAAAGCTAGTAGACAAGATGGTAAGCACTATAGATTTTTCAGACAGCTTGAAGCAATATGTGGAGAACCAAACACAAACTCTCATGCCTCAACTTTAGACAAAATTACCCCAAATGCTTCCTTTGTTGCTACTCAAACTCAAACCTTCACAATTAACCAAGAAAATACTAATGGTGTTGATCACAATTTGATCAATAACCACAAGTATTCACAAAGTCTAAGTTTCTCGAACTCGTCTGAATTTGAGACATCCTCATCTGAAAACAACGATGAGGATCTCTCAACTATTGCACACACTATGAAGTCGTCGAAGGAGAAAGGGCAAAGTGGTCATAGGAGGGCAAGGAAAAGTTGGAGAGGTAAAGTTGAGGAGATTGTAGATTCTCACATGAAAAATATTATTGAGACTCAAGATGCTTGGATGGAGAGAATGTTGAGTGTTGTTGAACAAAGAGAACAAGAGATAGCATCAAAGGAAGAAGAAAGGAAGAGAAAAGAGTCAATGAGGTTTGATCAAGAAATACATGAACTTTGGGCTAAAGAAAAAGCATGGGTTGAAGCAAGAGATTCTGCATTGTTAGAAGTTGTAAGAAAACATATTGGGATACAACTTGAAGCACCAAATAAGAGTAAGAGCCAAGAAGCAAATGATACAACAAATTATGAATACCCTTTTGAAAGTGTGGATAATATTCATAGATGGACAGAAATGGAAATTTCAAATTTGATACAACTAAGGAGTGGTTTTGAACATCAAGTAAGAGAAAAAGGATATTTGGATGATGGAGTTTGGGATGAAATAGGTGAAAGGATGGTTTATATGGGATTTAATAGGAATGGAGCTGAGTGCAAGAAAATATGGGATGATATTAGTATGTCTCTTAGAAGGACAGTGGACTGTGGAGTCAAAAACACAAGGCCTTGGTGTTTGGGACTTAAGCTGACAGATGATGACGACCTTTGA

Protein sequence

>MsG0180005038.01.T01

MSDLYGLPEDLRRLITSSRNTTHLPAEPPPCLYGGVATFPPPNYSYDPMIVGDVFYPRSSFTHHYDYSSTVNPTNTTIAAAAAAAASNSDHATASTAFCVGLETSDKGWLGNFDSCNNRWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMAEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASRQDGKHYRFFRQLEAICGEPNTNSHASTLDKITPNASFVATQTQTFTINQENTNGVDHNLINNHKYSQSLSFSNSSEFETSSSENNDEDLSTIAHTMKSSKEKGQSGHRRARKSWRGKVEEIVDSHMKNIIETQDAWMERMLSVVEQREQEIASKEEERKRKESMRFDQEIHELWAKEKAWVEARDSALLEVVRKHIGIQLEAPNKSKSQEANDTTNYEYPFESVDNIHRWTEMEISNLIQLRSGFEHQVREKGYLDDGVWDEIGERMVYMGFNRNGAECKKIWDDISMSLRRTVDCGVKNTRPWCLGLKLTDDDDL*