AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042959.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042959.01.T01 MTR_8g027100 98.810 84 1 0 18 101 3 86 9.09e-58 180
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042959.01.T01 AT2G46640 49.275 69 31 3 18 83 3 70 9.72e-12 60.5

Find 25 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCAAAGCAAAGTATTCT+TGG 0.268337 8:+16690461 None:intergenic
GTATTCTTGGTGATTGTTCA+TGG 0.327683 8:+16690474 None:intergenic
GTTTGTTACAGATCTTCAAT+TGG 0.412010 8:-16690818 MsG0880042959.01.T01:intron
TCACCAAGAATACTTTGCTT+TGG 0.419615 8:-16690464 MsG0880042959.01.T01:CDS
ATTCTTACCATTGGTACTCT+TGG 0.429438 8:-16690514 MsG0880042959.01.T01:CDS
TTTGTTACAGATCTTCAATT+GGG 0.432814 8:-16690817 MsG0880042959.01.T01:intron
AAACCGTTGAGAGTGTTGTT+AGG 0.437651 8:+16690777 None:intergenic
TTTCCAATCACCGAGCATAT+CGG 0.445673 8:+16690543 None:intergenic
TGACCGATATGCTCGGTGAT+TGG 0.446300 8:-16690546 MsG0880042959.01.T01:CDS
TTATCAGTGTTGTTGATTGA+AGG 0.480019 8:+16690595 None:intergenic
CCGATTACCATGTCACAAGC+AGG 0.502649 8:+16693133 None:intergenic
ATTCTATGATGTTGAACAAG+AGG 0.531758 8:-16690393 MsG0880042959.01.T01:CDS
TCTTCAATTGGGTGCACAAG+AGG 0.532391 8:-16690806 MsG0880042959.01.T01:CDS
GGCCTTCCCTGCTTGTGACA+TGG 0.540135 8:-16693140 MsG0880042959.01.T01:intron
AAAGACGGAATTCTTACCAT+TGG 0.543523 8:-16690523 MsG0880042959.01.T01:CDS
AGCAGGGAAGGCCGAGATGG+TGG 0.551281 8:+16693150 None:intergenic
CATCCTAACAACACTCTCAA+CGG 0.551417 8:-16690780 MsG0880042959.01.T01:intron
TACCATGTCACAAGCAGGGA+AGG 0.559765 8:+16693138 None:intergenic
TCTAGTCTTATCCACCATCT+CGG 0.561061 8:-16693161 MsG0880042959.01.T01:CDS
ATCATAGCCAAGAGTACCAA+TGG 0.569824 8:+16690507 None:intergenic
ATGCTCGGTGATTGGAAAGA+CGG 0.581029 8:-16690538 MsG0880042959.01.T01:CDS
ACAAGCAGGGAAGGCCGAGA+TGG 0.583693 8:+16693147 None:intergenic
TGATTGTTCATGGATTTCAA+AGG 0.604206 8:+16690484 None:intergenic
GTTGCTTTGACCGATATGCT+CGG 0.632441 8:-16690553 MsG0880042959.01.T01:CDS
CGATTACCATGTCACAAGCA+GGG 0.640267 8:+16693134 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAACACAAAGAATAA+AGG - Chr8:16691335-16691354 MsG0880042959.01.T01:intron 15.0%
!!! TTTTATTTTAGACACAAAAT+TGG + Chr8:16692851-16692870 None:intergenic 15.0%
!! AAAAAAAGGGAAAACTATAA+TGG + Chr8:16692467-16692486 None:intergenic 20.0%
!! AAAAAAGGGAAAACTATAAT+GGG + Chr8:16692466-16692485 None:intergenic 20.0%
!! AAGATGAAATTTAAAGATCA+AGG - Chr8:16691759-16691778 MsG0880042959.01.T01:intron 20.0%
!! ACATTTGATCCTATAATATT+TGG + Chr8:16691659-16691678 None:intergenic 20.0%
!! ATATTATAGGATCAAATGTA+CGG - Chr8:16691660-16691679 MsG0880042959.01.T01:intron 20.0%
!! CTCAAGAAAACATAAATATA+AGG + Chr8:16691249-16691268 None:intergenic 20.0%
!! GAAGAAAAAAATGCATAAAA+TGG - Chr8:16691847-16691866 MsG0880042959.01.T01:intron 20.0%
!! GTCATTTATTCTTTATGTTT+AGG + Chr8:16692307-16692326 None:intergenic 20.0%
!! GTTAAAGAACCAAATATTAT+AGG - Chr8:16691647-16691666 MsG0880042959.01.T01:intron 20.0%
!! TAAGAAAAAAACTACAAAAC+CGG + Chr8:16692143-16692162 None:intergenic 20.0%
!! TCATGAATTAATGTGATTTA+CGG + Chr8:16691829-16691848 None:intergenic 20.0%
!!! ACATATTTTAATCCTTACAA+AGG - Chr8:16691734-16691753 MsG0880042959.01.T01:intron 20.0%
!!! CACAATTTTTAAGACAATAA+AGG + Chr8:16692666-16692685 None:intergenic 20.0%
!!! GTTTTGTAGTTTTTTTCTTA+GGG - Chr8:16692143-16692162 MsG0880042959.01.T01:intron 20.0%
!!! TTTTGTAGTCTTTTTTCTTA+GGG + Chr8:16691974-16691993 None:intergenic 20.0%
!!! TTTTGTAGTTTTTTTCTTAG+GGG - Chr8:16692144-16692163 MsG0880042959.01.T01:intron 20.0%
! AAAAAGGGAAAACTATAATG+GGG + Chr8:16692465-16692484 None:intergenic 25.0%
! AAAGGAAGATTGAACAATTA+AGG - Chr8:16691353-16691372 MsG0880042959.01.T01:intron 25.0%
! AATATAACGTGAATTCACTA+CGG - Chr8:16691794-16691813 MsG0880042959.01.T01:intron 25.0%
! ACCAATTGCTTGATTAAAAA+GGG - Chr8:16691899-16691918 MsG0880042959.01.T01:intron 25.0%
! ATATATTAACCAATTGGCAT+TGG + Chr8:16691874-16691893 None:intergenic 25.0%
! ATTCACCAATACAACAATTT+CGG + Chr8:16690524-16690543 None:intergenic 25.0%
! CATATGCATGAGAAATATAA+TGG + Chr8:16692618-16692637 None:intergenic 25.0%
! CCAAATAATGAGGAAAAAAA+GGG + Chr8:16692480-16692499 None:intergenic 25.0%
! TAGTGATTGTTTCATCTATT+TGG + Chr8:16690689-16690708 None:intergenic 25.0%
! TATATGACTCAAAATCTTGT+TGG + Chr8:16691320-16691339 None:intergenic 25.0%
! TCCAAATAATGAGGAAAAAA+AGG + Chr8:16692481-16692500 None:intergenic 25.0%
! TGGGTGAAAAATATCTTTAT+TGG + Chr8:16690712-16690731 None:intergenic 25.0%
! TGTGAAATAATTGAGTTTCT+TGG + Chr8:16690887-16690906 None:intergenic 25.0%
! TGTGCAATATATTAACCAAT+TGG + Chr8:16691880-16691899 None:intergenic 25.0%
! TTAACCAAATTCACAGTTAT+TGG + Chr8:16690616-16690635 None:intergenic 25.0%
! TTTCTTACAAAGAGATACAA+TGG - Chr8:16690794-16690813 MsG0880042959.01.T01:CDS 25.0%
! TTTGTTACAGATCTTCAATT+GGG - Chr8:16692739-16692758 MsG0880042959.01.T01:intron 25.0%
!! ATGTAGTCTTGATTCAAAAA+AGG + Chr8:16690482-16690501 None:intergenic 25.0%
!! GTTTAATTTCCTTAGAAAGT+TGG + Chr8:16692559-16692578 None:intergenic 25.0%
!! GTTTTGTAGTCTTTTTTCTT+AGG + Chr8:16691975-16691994 None:intergenic 25.0%
!! TCATGAGTTTCTCTTTTTAA+TGG + Chr8:16692219-16692238 None:intergenic 25.0%
!!! AAAAAGTTTTGGTGTCTTTT+GGG + Chr8:16691073-16691092 None:intergenic 25.0%
!!! GGTTTTGTAGTTTTTTTCTT+AGG - Chr8:16692142-16692161 MsG0880042959.01.T01:intron 25.0%
!!! TTGTTTCATCTATTTGGTTT+TGG + Chr8:16690683-16690702 None:intergenic 25.0%
!!! TTTGTAGTTTTTTTCTTAGG+GGG - Chr8:16692145-16692164 MsG0880042959.01.T01:intron 25.0%
AAAAGGGAAAACTATAATGG+GGG + Chr8:16692464-16692483 None:intergenic 30.0%
AACTACAAAATCCAATTGTG+AGG - Chr8:16692384-16692403 MsG0880042959.01.T01:intron 30.0%
AATCTAGTGTTTACCAAAAG+AGG + Chr8:16690995-16691014 None:intergenic 30.0%
ACTACAAAATCCAATTGTGA+GGG - Chr8:16692385-16692404 MsG0880042959.01.T01:intron 30.0%
ATGCTTATATATACAAGGCA+AGG + Chr8:16691159-16691178 None:intergenic 30.0%
ATTCTATGATGTTGAACAAG+AGG - Chr8:16693163-16693182 MsG0880042959.01.T01:CDS 30.0%
ATTTCATCTTCTCCTTTGTA+AGG + Chr8:16691749-16691768 None:intergenic 30.0%
CACACTAATACTTTAATGTG+TGG - Chr8:16690640-16690659 MsG0880042959.01.T01:intron 30.0%
CACCAATTGCTTGATTAAAA+AGG - Chr8:16691898-16691917 MsG0880042959.01.T01:intron 30.0%
CATTTATAGTATAGCTCTTG+TGG + Chr8:16691521-16691540 None:intergenic 30.0%
CTAAGGAAATTAAACCATGA+AGG - Chr8:16692564-16692583 MsG0880042959.01.T01:intron 30.0%
GACTGATGCTTATATATACA+AGG + Chr8:16691164-16691183 None:intergenic 30.0%
GGAAATCAGAACAAATCATT+AGG + Chr8:16690581-16690600 None:intergenic 30.0%
TGATTGTTCATGGATTTCAA+AGG + Chr8:16693075-16693094 None:intergenic 30.0%
TTCACCAATACAACAATTTC+GGG + Chr8:16690523-16690542 None:intergenic 30.0%
TTTCAGACGTAAGTCAAATT+TGG + Chr8:16690742-16690761 None:intergenic 30.0%
! AAGATATTTTTCACCCAGTT+CGG - Chr8:16690715-16690734 MsG0880042959.01.T01:intron 30.0%
! CACAATTGGATTTTGTAGTT+TGG + Chr8:16692384-16692403 None:intergenic 30.0%
! GTTTGTTACAGATCTTCAAT+TGG - Chr8:16692738-16692757 MsG0880042959.01.T01:intron 30.0%
! TTATCAGTGTTGTTGATTGA+AGG + Chr8:16692964-16692983 None:intergenic 30.0%
!! ATATAAGGTGTTTTCTTGCT+TGG + Chr8:16691234-16691253 None:intergenic 30.0%
!! CGTTTGTGTTTTTACTTAGA+TGG - Chr8:16692910-16692929 MsG0880042959.01.T01:intron 30.0%
!! GAAACTCTTTGATAGTGAAT+TGG + Chr8:16690778-16690797 None:intergenic 30.0%
!!! AAAAGTTTTGGTGTCTTTTG+GGG + Chr8:16691072-16691091 None:intergenic 30.0%
!!! AAGGTTTTTGAAATGAAGAG+TGG + Chr8:16692516-16692535 None:intergenic 30.0%
!!! AGGTTTTTGAAATGAAGAGT+GGG + Chr8:16692515-16692534 None:intergenic 30.0%
!!! CCCTTTTTTTCCTCATTATT+TGG - Chr8:16692477-16692496 MsG0880042959.01.T01:intron 30.0%
!!! GAAAAAGTTTTGGTGTCTTT+TGG + Chr8:16691074-16691093 None:intergenic 30.0%
AAAAACCACTCAAACACCTT+GGG + Chr8:16690910-16690929 None:intergenic 35.0%
AAAGACGGAATTCTTACCAT+TGG - Chr8:16693033-16693052 MsG0880042959.01.T01:intron 35.0%
AATCGCAATTTGGGAAAGTT+AGG + Chr8:16691945-16691964 None:intergenic 35.0%
AATCTTGTGGAACCAAAAGA+GGG + Chr8:16691104-16691123 None:intergenic 35.0%
ACAACCCGAAATTGTTGTAT+TGG - Chr8:16690516-16690535 MsG0880042959.01.T01:CDS 35.0%
ACTCAATTATTTCACACCCA+AGG - Chr8:16690891-16690910 MsG0880042959.01.T01:intron 35.0%
AGAGAAACTCATGATCATGA+AGG - Chr8:16692225-16692244 MsG0880042959.01.T01:intron 35.0%
ATATACAAGGCAAGGACTTT+CGG + Chr8:16691151-16691170 None:intergenic 35.0%
ATCGCAATTTGGGAAAGTTA+GGG + Chr8:16691944-16691963 None:intergenic 35.0%
ATTCTTACCATTGGTACTCT+TGG - Chr8:16693042-16693061 MsG0880042959.01.T01:intron 35.0%
ATTGGAACCTAAGTTGCAAA+TGG + Chr8:16692833-16692852 None:intergenic 35.0%
CGTTAACCTTTGAATTCCTA+AGG - Chr8:16690965-16690984 MsG0880042959.01.T01:intron 35.0%
GAGAAACTCATGATCATGAA+GGG - Chr8:16692226-16692245 MsG0880042959.01.T01:intron 35.0%
GGTGAAAAATGTGAATCTTG+TGG + Chr8:16691117-16691136 None:intergenic 35.0%
GTGGGAAATGCTAAATTAGA+TGG + Chr8:16692270-16692289 None:intergenic 35.0%
TAAAATGGACCAATGCCAAT+TGG - Chr8:16691862-16691881 MsG0880042959.01.T01:intron 35.0%
TAATTGAGTTTCTTGGACAC+AGG + Chr8:16690880-16690899 None:intergenic 35.0%
TCACCAAGAATACTTTGCTT+TGG - Chr8:16693092-16693111 MsG0880042959.01.T01:intron 35.0%
TCCAAGGAAAAAAAAACACG+TGG + Chr8:16692086-16692105 None:intergenic 35.0%
TGTGTCACAACAATGTTGTT+GGG + Chr8:16692354-16692373 None:intergenic 35.0%
TTGTGTCACAACAATGTTGT+TGG + Chr8:16692355-16692374 None:intergenic 35.0%
! ACTTTCCCAAATTGCGATTT+TGG - Chr8:16691946-16691965 MsG0880042959.01.T01:intron 35.0%
! AGGAGTGTAGAATCACTAAA+AGG + Chr8:16690462-16690481 None:intergenic 35.0%
! CTTCCAAAGCAAAGTATTCT+TGG + Chr8:16693098-16693117 None:intergenic 35.0%
! GCCCTTTTTAATCAAGCAAT+TGG + Chr8:16691903-16691922 None:intergenic 35.0%
! GTATTCTTGGTGATTGTTCA+TGG + Chr8:16693085-16693104 None:intergenic 35.0%
!! AATTTCGGGTTGTAAAAGTG+AGG + Chr8:16690509-16690528 None:intergenic 35.0%
!!! ACGTGTTTTTTTTTCCTTGG+AGG - Chr8:16692085-16692104 MsG0880042959.01.T01:intron 35.0%
!!! CGTGTTTTTTTTTCCTTGGA+GGG - Chr8:16692086-16692105 MsG0880042959.01.T01:intron 35.0%
!!! GGTTTTTGAAATGAAGAGTG+GGG + Chr8:16692514-16692533 None:intergenic 35.0%
AAATCATTAGGTGAGCACCA+TGG + Chr8:16690569-16690588 None:intergenic 40.0%
AAATGAAGAGTGGGGAATGA+GGG + Chr8:16692506-16692525 None:intergenic 40.0%
AACCTTCACCACACCAAATT+CGG - Chr8:16692530-16692549 MsG0880042959.01.T01:intron 40.0%
AAGTCAAATTTGGACCGAAC+TGG + Chr8:16690732-16690751 None:intergenic 40.0%
AATCATTAGGTGAGCACCAT+GGG + Chr8:16690568-16690587 None:intergenic 40.0%
ACACATGAGAGGTCATATTG+AGG + Chr8:16691019-16691038 None:intergenic 40.0%
AGAAAGTTGGCAACCGAATT+TGG + Chr8:16692546-16692565 None:intergenic 40.0%
AGTCAAATTTGGACCGAACT+GGG + Chr8:16690731-16690750 None:intergenic 40.0%
AGTTACACTTCCAAAGAGTC+AGG + Chr8:16691392-16691411 None:intergenic 40.0%
ATCGCAACTTCGTGAAAGTT+AGG - Chr8:16692173-16692192 MsG0880042959.01.T01:intron 40.0%
ATCTTGTGGAACCAAAAGAG+GGG + Chr8:16691103-16691122 None:intergenic 40.0%
ATTCATGAGGTGGATACACA+TGG + Chr8:16691045-16691064 None:intergenic 40.0%
ATTCGGTTGCCAACTTTCTA+AGG - Chr8:16692547-16692566 MsG0880042959.01.T01:intron 40.0%
CATCCTAACAACACTCTCAA+CGG - Chr8:16692776-16692795 MsG0880042959.01.T01:intron 40.0%
CATGGTGTGATTTACCTTCA+TGG + Chr8:16692581-16692600 None:intergenic 40.0%
CCTAATTCAACAACCCATGT+TGG - Chr8:16692437-16692456 MsG0880042959.01.T01:intron 40.0%
CGGGGAAAAGGAAGAAATTA+GGG + Chr8:16690849-16690868 None:intergenic 40.0%
GAAAAACCACTCAAACACCT+TGG + Chr8:16690911-16690930 None:intergenic 40.0%
GAATCTTGTGGAACCAAAAG+AGG + Chr8:16691105-16691124 None:intergenic 40.0%
GAATTTCTCGATATCCCACT+TGG - Chr8:16690540-16690559 MsG0880042959.01.T01:CDS 40.0%
GGAGATCCTTAGGAATTCAA+AGG + Chr8:16690974-16690993 None:intergenic 40.0%
GGTGCCAATAACTGTGAATT+TGG - Chr8:16690609-16690628 MsG0880042959.01.T01:CDS 40.0%
GTTACACTTCCAAAGAGTCA+GGG + Chr8:16691391-16691410 None:intergenic 40.0%
TACCAAAAGAGGAGATCCTT+AGG + Chr8:16690984-16691003 None:intergenic 40.0%
TAGGTTGCACATTCTCATGT+GGG + Chr8:16692288-16692307 None:intergenic 40.0%
TCGCAACTTCGTGAAAGTTA+GGG - Chr8:16692174-16692193 MsG0880042959.01.T01:intron 40.0%
TCGCAATTTGGGAAAGTTAG+GGG + Chr8:16691943-16691962 None:intergenic 40.0%
TCGGGGAAAAGGAAGAAATT+AGG + Chr8:16690850-16690869 None:intergenic 40.0%
TGCCACAAGTGCAAAACTTA+GGG + Chr8:16692001-16692020 None:intergenic 40.0%
TGCTACAGGTGCAAAACTTA+GGG - Chr8:16692116-16692135 MsG0880042959.01.T01:intron 40.0%
TGTAGAATCACTAAAAGGCG+AGG + Chr8:16690457-16690476 None:intergenic 40.0%
TTAACGATCAGTTCCTCTTG+AGG + Chr8:16690951-16690970 None:intergenic 40.0%
TTCATGAGGTGGATACACAT+GGG + Chr8:16691044-16691063 None:intergenic 40.0%
TTTCCAATCACCGAGCATAT+CGG + Chr8:16693016-16693035 None:intergenic 40.0%
! CCAACATGGGTTGTTGAATT+AGG + Chr8:16692440-16692459 None:intergenic 40.0%
! CTTTCACGAAGTTGCGATTT+TGG + Chr8:16692171-16692190 None:intergenic 40.0%
! GATTTGTTCTGATTTCCCCA+CGG - Chr8:16690584-16690603 MsG0880042959.01.T01:CDS 40.0%
! GGGGACTCTTGAAAAAGTTT+TGG + Chr8:16691084-16691103 None:intergenic 40.0%
! TCACATTTTTCACCACTCGT+TGG - Chr8:16691123-16691142 MsG0880042959.01.T01:intron 40.0%
! TTAGGTTGCACATTCTCATG+TGG + Chr8:16692289-16692308 None:intergenic 40.0%
! TTCCTAAGGATCTCCTCTTT+TGG - Chr8:16690979-16690998 MsG0880042959.01.T01:intron 40.0%
! TTTTGCACCTGTAGCAGTTT+TGG + Chr8:16692112-16692131 None:intergenic 40.0%
! TTTTGCACTTGTGGCAGTTT+TGG - Chr8:16692005-16692024 MsG0880042959.01.T01:intron 40.0%
!! AAACCGTTGAGAGTGTTGTT+AGG + Chr8:16692782-16692801 None:intergenic 40.0%
!! ATCATAGCCAAGAGTACCAA+TGG + Chr8:16693052-16693071 None:intergenic 40.0%
!! TCTAGTCTTATCCACCATCT+CGG - Chr8:16690395-16690414 MsG0880042959.01.T01:CDS 40.0%
!! TTTTCAAGAGTCCCCTCTTT+TGG - Chr8:16691089-16691108 MsG0880042959.01.T01:intron 40.0%
!!! GCCACGTGTTTTTTTTTCCT+TGG - Chr8:16692082-16692101 MsG0880042959.01.T01:intron 40.0%
AATCCAATTGTGAGGGTCAG+TGG - Chr8:16692392-16692411 MsG0880042959.01.T01:intron 45.0%
AATGAAGAGTGGGGAATGAG+GGG + Chr8:16692505-16692524 None:intergenic 45.0%
ACAAGTGCAAAACTTAGGGG+CGG + Chr8:16691997-16692016 None:intergenic 45.0%
ACACATGGGAAACACATGAG+AGG + Chr8:16691030-16691049 None:intergenic 45.0%
ACTCATAGTCCCTGACTCTT+TGG - Chr8:16691379-16691398 MsG0880042959.01.T01:intron 45.0%
AGCGTAGACCGAGTCAAAAT+TGG + Chr8:16692040-16692059 None:intergenic 45.0%
ATCCAATTGTGAGGGTCAGT+GGG - Chr8:16692393-16692412 MsG0880042959.01.T01:intron 45.0%
ATGAGGGGGTCCAAATAATG+AGG + Chr8:16692490-16692509 None:intergenic 45.0%
CCTCTTGAGGATGAAATCCA+GGG + Chr8:16690938-16690957 None:intergenic 45.0%
CCTGCTTGTGACATGGTAAT+CGG - Chr8:16690423-16690442 MsG0880042959.01.T01:CDS 45.0%
CGATTACCATGTCACAAGCA+GGG + Chr8:16690425-16690444 None:intergenic 45.0%
CGCAACTTCGTGAAAGTTAG+GGG - Chr8:16692175-16692194 MsG0880042959.01.T01:intron 45.0%
CGCAATTTGGGAAAGTTAGG+GGG + Chr8:16691942-16691961 None:intergenic 45.0%
CTGCCACAAGTGCAAAACTT+AGG + Chr8:16692002-16692021 None:intergenic 45.0%
CTGCTACAGGTGCAAAACTT+AGG - Chr8:16692115-16692134 MsG0880042959.01.T01:intron 45.0%
CTTCGCTCCATTTGCAACTT+AGG - Chr8:16692823-16692842 MsG0880042959.01.T01:intron 45.0%
CTTGGACACAGGAAGAGATT+CGG + Chr8:16690869-16690888 None:intergenic 45.0%
GAAATGAAGAGTGGGGAATG+AGG + Chr8:16692507-16692526 None:intergenic 45.0%
GCAACTTCGTGAAAGTTAGG+GGG - Chr8:16692176-16692195 MsG0880042959.01.T01:intron 45.0%
GCCACAAGTGCAAAACTTAG+GGG + Chr8:16692000-16692019 None:intergenic 45.0%
GCTACAGGTGCAAAACTTAG+GGG - Chr8:16692117-16692136 MsG0880042959.01.T01:intron 45.0%
GGGTGCCAAAATCGCAATTT+GGG + Chr8:16691954-16691973 None:intergenic 45.0%
TCCTCTTGAGGATGAAATCC+AGG + Chr8:16690939-16690958 None:intergenic 45.0%
TCTTCAATTGGGTGCACAAG+AGG - Chr8:16692750-16692769 MsG0880042959.01.T01:intron 45.0%
TGAGGATGAAATCCAGGGTT+TGG + Chr8:16690933-16690952 None:intergenic 45.0%
TTGAATTAGGTTCTGCCACG+TGG + Chr8:16692427-16692446 None:intergenic 45.0%
TTGGACACAGGAAGAGATTC+GGG + Chr8:16690868-16690887 None:intergenic 45.0%
! ACTATAATGGGGGACCAACA+TGG + Chr8:16692454-16692473 None:intergenic 45.0%
! AGGGTGCCAAAATCGCAATT+TGG + Chr8:16691955-16691974 None:intergenic 45.0%
! AGGTGTTTTCTTGCTTGGCA+AGG + Chr8:16691229-16691248 None:intergenic 45.0%
! ATGCTCGGTGATTGGAAAGA+CGG - Chr8:16693018-16693037 MsG0880042959.01.T01:intron 45.0%
! CTATAATGGGGGACCAACAT+GGG + Chr8:16692453-16692472 None:intergenic 45.0%
! GTTGCTTTGACCGATATGCT+CGG - Chr8:16693003-16693022 MsG0880042959.01.T01:intron 45.0%
! TGAGTGGTTTTTCCAAACCC+TGG - Chr8:16690918-16690937 MsG0880042959.01.T01:intron 45.0%
!! AACCGAATTTGGTGTGGTGA+AGG + Chr8:16692535-16692554 None:intergenic 45.0%
!! ACCGAGTCAAAATTGGCCTT+GGG + Chr8:16692033-16692052 None:intergenic 45.0%
!!! AGTTTTGGTGTCTTTTGGGG+AGG + Chr8:16691069-16691088 None:intergenic 45.0%
!!! GTTTTGGTGTCTTTTGGGGA+GGG + Chr8:16691068-16691087 None:intergenic 45.0%
AAACACGTGGCACCTCACTT+AGG + Chr8:16692073-16692092 None:intergenic 50.0%
AACACGTGGCACCTCACTTA+GGG + Chr8:16692072-16692091 None:intergenic 50.0%
ATGAAGAGTGGGGAATGAGG+GGG + Chr8:16692504-16692523 None:intergenic 50.0%
ATGGCTGTGTTGTGTGTGCA+TGG + Chr8:16692599-16692618 None:intergenic 50.0%
CAGGAAGAGATTCGGGGAAA+AGG + Chr8:16690861-16690880 None:intergenic 50.0%
CCCTGGATTTCATCCTCAAG+AGG - Chr8:16690935-16690954 MsG0880042959.01.T01:intron 50.0%
CCGATTACCATGTCACAAGC+AGG + Chr8:16690426-16690445 None:intergenic 50.0%
GATATCCCACTTGGTACCCA+TGG - Chr8:16690549-16690568 MsG0880042959.01.T01:CDS 50.0%
TACCATGTCACAAGCAGGGA+AGG + Chr8:16690421-16690440 None:intergenic 50.0%
TGGACACAGGAAGAGATTCG+GGG + Chr8:16690867-16690886 None:intergenic 50.0%
TGTTCTGATTTCCCCACGGT+GGG - Chr8:16690588-16690607 MsG0880042959.01.T01:CDS 50.0%
TTGTTCTGATTTCCCCACGG+TGG - Chr8:16690587-16690606 MsG0880042959.01.T01:CDS 50.0%
! GACCGAGTCAAAATTGGCCT+TGG + Chr8:16692034-16692053 None:intergenic 50.0%
! GCCCCTAAGTTTTGCACTTG+TGG - Chr8:16691996-16692015 MsG0880042959.01.T01:intron 50.0%
! GTTGGCAACCGAATTTGGTG+TGG + Chr8:16692541-16692560 None:intergenic 50.0%
! TCACACCCAAGGTGTTTGAG+TGG - Chr8:16690902-16690921 MsG0880042959.01.T01:intron 50.0%
! TGACCGATATGCTCGGTGAT+TGG - Chr8:16693010-16693029 MsG0880042959.01.T01:intron 50.0%
!! CCGAGTCAAAATTGGCCTTG+GGG + Chr8:16692032-16692051 None:intergenic 50.0%
!! CGAGTCAAAATTGGCCTTGG+GGG + Chr8:16692031-16692050 None:intergenic 50.0%
!! CTTTTGGGGAGGGATTCATG+AGG + Chr8:16691058-16691077 None:intergenic 50.0%
!!! CCCCAAGGCCAATTTTGACT+CGG - Chr8:16692029-16692048 MsG0880042959.01.T01:intron 50.0%
ACAGTTATTGGCACCCACCG+TGG + Chr8:16690604-16690623 None:intergenic 55.0%
AGTTATTGGCACCCACCGTG+GGG + Chr8:16690602-16690621 None:intergenic 55.0%
CAGGTGCAAAACTTAGGGGC+CGG - Chr8:16692121-16692140 MsG0880042959.01.T01:intron 55.0%
CAGTTATTGGCACCCACCGT+GGG + Chr8:16690603-16690622 None:intergenic 55.0%
CTGACGTGACACCCTAAGTG+AGG - Chr8:16692058-16692077 MsG0880042959.01.T01:intron 55.0%
GACCCACTGACCCTCACAAT+TGG + Chr8:16692398-16692417 None:intergenic 55.0%
GAGCACCATGGGTACCAAGT+GGG + Chr8:16690557-16690576 None:intergenic 55.0%
GGACTTTCGGTTCCAACGAG+TGG + Chr8:16691138-16691157 None:intergenic 55.0%
TGAGCACCATGGGTACCAAG+TGG + Chr8:16690558-16690577 None:intergenic 55.0%
TGGAGGGCCAAAACTGCTAC+AGG - Chr8:16692102-16692121 MsG0880042959.01.T01:intron 55.0%
TTGGGGAGGGATTCATGAGG+TGG + Chr8:16691055-16691074 None:intergenic 55.0%
!! GTAGCAGTTTTGGCCCTCCA+AGG + Chr8:16692102-16692121 None:intergenic 55.0%
ACAAGCAGGGAAGGCCGAGA+TGG + Chr8:16690412-16690431 None:intergenic 60.0%
CAGTGGGTCTAGTGACCACG+TGG - Chr8:16692409-16692428 MsG0880042959.01.T01:intron 60.0%
GGCCTTCCCTGCTTGTGACA+TGG - Chr8:16690416-16690435 MsG0880042959.01.T01:CDS 60.0%
!! TGTGGCAGTTTTGGCCCCCA+AGG - Chr8:16692014-16692033 MsG0880042959.01.T01:intron 60.0%
AGCAGGGAAGGCCGAGATGG+TGG + Chr8:16690409-16690428 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 16690387 16693191 16690387 ID=MsG0880042959.01;Name=MsG0880042959.01
Chr8 mRNA 16690387 16693191 16690387 ID=MsG0880042959.01.T01;Parent=MsG0880042959.01;Name=MsG0880042959.01.T01;_AED=0.46;_eAED=0.46;_QI=0|0.75|0.8|0.8|0.75|0.4|5|0|120
Chr8 exon 16690387 16690649 16690387 ID=MsG0880042959.01.T01:exon:4356;Parent=MsG0880042959.01.T01
Chr8 exon 16690781 16690829 16690781 ID=MsG0880042959.01.T01:exon:4355;Parent=MsG0880042959.01.T01
Chr8 exon 16693141 16693191 16693141 ID=MsG0880042959.01.T01:exon:4354;Parent=MsG0880042959.01.T01
Chr8 CDS 16693141 16693191 16693141 ID=MsG0880042959.01.T01:cds;Parent=MsG0880042959.01.T01
Chr8 CDS 16690781 16690829 16690781 ID=MsG0880042959.01.T01:cds;Parent=MsG0880042959.01.T01
Chr8 CDS 16690387 16690649 16690387 ID=MsG0880042959.01.T01:cds;Parent=MsG0880042959.01.T01
Gene Sequence

>MsG0880042959.01.T01

ATGGCACTTCTAGTCTTATCCACCATCTCGGCCTTCCCTGCTTGTGACATGATCTTCAATTGGGTGCACAAGAGGTTTCATCCTAACAACACTCTCAACGATGGATTTGCTTCAAACATGAAAAAGAATGAACCTTCAATCAACAACACTGATAATCAAGCTTTGTTGAAACAAGTTGCTTTGACCGATATGCTCGGTGATTGGAAAGACGGAATTCTTACCATTGGTACTCTTGGCTATGATCCTTTGAAATCCATGAACAATCACCAAGAATACTTTGCTTTGGAAGCTGAAAAACAACATGATTTAGTTCTTGATGATGATGATGTTGAAAATTCTATGATGTTGAACAAGAGGAACTGA
Protein sequence

>MsG0880042959.01.T01

MALLVLSTISAFPACDMIFNWVHKRFHPNNTLNDGFASNMKKNEPSINNTDNQALLKQVALTDMLGDWKDGILTIGTLGYDPLKSMNNHQEYFALEAEKQHDLVLDDDDVENSMMLNKRN*