AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580029310.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580029310.01.T01 MTR_5g084570 76.000 50 12 0 1 50 1 50 9.76e-19 78.6
MsG0580029310.01.T01 MTR_5g084540 74.000 50 13 0 1 50 1 50 1.59e-18 77.8
MsG0580029310.01.T01 MTR_5g084330 90.909 55 5 0 1 55 1 55 4.72e-13 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 50 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCACCATAGCTTCCATATT+TGG 0.163743 5:+95119625 None:intergenic
TGTTGCGGTTACGGGTATTA+TGG 0.256357 5:-95119453 MsG0580029310.01.T01:CDS
GAATTAAATGATGCCAAATA+TGG 0.269004 5:-95119638 MsG0580029310.01.T01:CDS
CGCTATGGCTGTTGCGGTTA+CGG 0.282640 5:-95119462 MsG0580029310.01.T01:CDS
CCTGGTCGTGGTGGTAATTA+TGG 0.320779 5:-95119596 MsG0580029310.01.T01:CDS
ACATCCTCTAATACCCAAAA+AGG 0.335650 5:-95122865 MsG0580029310.01.T01:intron
TCTTATCTTCTCAGAAGTTT+CGG 0.344346 5:-95122905 MsG0580029310.01.T01:CDS
AATCGTTATACTAGGTCTAT+TGG 0.366883 5:-95122938 MsG0580029310.01.T01:CDS
ACAGTACCACCACGGTTTCC+AGG 0.374871 5:+95119500 None:intergenic
TAATTACCACCACGGTTTCC+AGG 0.380329 5:+95119539 None:intergenic
GCTATGGCTGTTGCGGTTAC+GGG 0.392080 5:-95119461 MsG0580029310.01.T01:CDS
GTTGCGGTTACGGGTATTAT+GGG 0.397004 5:-95119452 MsG0580029310.01.T01:CDS
ATCATGCATGGTGCACTTCT+CGG 0.401222 5:-95119344 MsG0580029310.01.T01:CDS
TAACCACCACCACGGTTTCC+AGG 0.406140 5:+95119563 None:intergenic
AATTATGGTGGTGGTTATCC+TGG 0.457834 5:-95119581 MsG0580029310.01.T01:CDS
CTTCTCAGAAGTTTCGGCTA+GGG 0.490070 5:-95122899 MsG0580029310.01.T01:CDS
GCCAAATATGGAAGCTATGG+TGG 0.492456 5:-95119626 MsG0580029310.01.T01:CDS
TATTGTCGCTATGGCTGTTG+CGG 0.520103 5:-95119468 MsG0580029310.01.T01:CDS
AATTACCACCACGGTTTCCA+GGG 0.523853 5:+95119540 None:intergenic
CGTGGTGGTAATTATGGTGG+TGG 0.530246 5:-95119590 MsG0580029310.01.T01:CDS
GATGCCAAATATGGAAGCTA+TGG 0.552048 5:-95119629 MsG0580029310.01.T01:CDS
TATGATGGTGGTGGTTACCC+TGG 0.553367 5:-95119518 MsG0580029310.01.T01:CDS
TCTTCTCAGAAGTTTCGGCT+AGG 0.555082 5:-95122900 MsG0580029310.01.T01:CDS
GGAGGTAATTATTGTCGCTA+TGG 0.558591 5:-95119477 MsG0580029310.01.T01:CDS
CCAAATATGGAAGCTATGGT+GGG 0.559084 5:-95119625 MsG0580029310.01.T01:CDS
AACCGTGGTGGTGGTTACCC+TGG 0.559819 5:-95119557 MsG0580029310.01.T01:CDS
CAGTACCACCACGGTTTCCA+GGG 0.566605 5:+95119501 None:intergenic
AGTGTTGTTCTCAGTTTGCA+CGG 0.568848 5:+95119389 None:intergenic
TATCCTGGAAACCGTGGTGG+TGG 0.578604 5:-95119566 MsG0580029310.01.T01:CDS
GGTATTATGGGAGTTGCAGA+AGG 0.591131 5:-95119440 MsG0580029310.01.T01:CDS
CCATAATTACCACCACGACC+AGG 0.597203 5:+95119596 None:intergenic
AACCGTGGTGGTAATTATGA+TGG 0.597968 5:-95119533 MsG0580029310.01.T01:CDS
CAAATATGGAAGCTATGGTG+GGG 0.602360 5:-95119624 MsG0580029310.01.T01:CDS
AGAAGGTGTTGCTCATATGC+TGG 0.617122 5:-95119423 MsG0580029310.01.T01:CDS
CACCATCATAATTACCACCA+CGG 0.629177 5:+95119531 None:intergenic
AAATATGGAAGCTATGGTGG+GGG 0.630498 5:-95119623 MsG0580029310.01.T01:CDS
GGTGGTAATTATGATGGTGG+TGG 0.631321 5:-95119527 MsG0580029310.01.T01:CDS
GGTCGTGGTGGTAATTATGG+TGG 0.644801 5:-95119593 MsG0580029310.01.T01:CDS
CATAGTGATATCATCATGCA+TGG 0.655164 5:-95119356 MsG0580029310.01.T01:CDS
TTCCAGGGTAACCACCACCA+CGG 0.661772 5:+95119555 None:intergenic
GGTTATCCTGGAAACCGTGG+TGG 0.662961 5:-95119569 MsG0580029310.01.T01:CDS
CGTGGTGGTAATTATGATGG+TGG 0.668763 5:-95119530 MsG0580029310.01.T01:CDS
GGTGGTTACCCTGGAAACCG+TGG 0.668990 5:-95119509 MsG0580029310.01.T01:CDS
GGTGGTTACCCTGGAAACCG+TGG 0.668990 5:-95119548 MsG0580029310.01.T01:CDS
TGGAAACCGTGGTGGTACTG+TGG 0.675645 5:-95119498 MsG0580029310.01.T01:CDS
GGTGGTTATCCTGGAAACCG+TGG 0.690182 5:-95119572 MsG0580029310.01.T01:CDS
GGTTACCCTGGAAACCGTGG+TGG 0.723489 5:-95119506 MsG0580029310.01.T01:CDS
AAACCGTGGTGGTACTGTGG+AGG 0.740101 5:-95119495 MsG0580029310.01.T01:CDS
GGTTACCCTGGAAACCGTGG+TGG 0.745370 5:-95119545 MsG0580029310.01.T01:CDS
TTACCTCCACAGTACCACCA+CGG 0.759902 5:+95119492 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + Chr5:95119643-95119624 None:intergenic 0.0%
!! ATATATATATATATATATAT+GGG - Chr5:95119624-95119643 MsG0580029310.01.T01:CDS 0.0%
!! ATATATATATATATATATAT+GGG + Chr5:95119643-95119624 None:intergenic 0.0%
!! TATATATATATATATATATA+GGG + Chr5:95119644-95119625 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG - Chr5:95119625-95119644 MsG0580029310.01.T01:CDS 0.0%
!! TATATATATATATATATATA+TGG + Chr5:95119644-95119625 None:intergenic 0.0%
!!! AATAAATCGAATTTTAATTA+AGG - Chr5:95121843-95121862 MsG0580029310.01.T01:intron 10.0%
!!! AATAAATCGAATTTTAATTA+AGG + Chr5:95121862-95121843 None:intergenic 10.0%
!!! AATTAAAATTCGATTTATTT+TGG - Chr5:95121587-95121606 MsG0580029310.01.T01:intron 10.0%
!!! AATTAAAATTCGATTTATTT+TGG + Chr5:95121606-95121587 None:intergenic 10.0%
!!! ATAAATCGAATTTTAATTAA+GGG - Chr5:95121844-95121863 MsG0580029310.01.T01:intron 10.0%
!!! ATAAATCGAATTTTAATTAA+GGG + Chr5:95121863-95121844 None:intergenic 10.0%
!!! TCTAATTAATTTTAAATAGA+AGG - Chr5:95120074-95120093 MsG0580029310.01.T01:intron 10.0%
!!! TTTTTTTGTTTCTTTTTTTA+AGG + Chr5:95120128-95120147 None:intergenic 10.0%
!! ATGAAAAAAAAAACAATAAG+AGG + Chr5:95120616-95120635 None:intergenic 15.0%
!! TATAAACAAAAGATTAAAGT+AGG + Chr5:95120053-95120072 None:intergenic 15.0%
!!! AATCCATTTGTTATAATTTT+AGG - Chr5:95120868-95120887 MsG0580029310.01.T01:intron 15.0%
!!! ACTTTTAAGAAAACAATATT+TGG - Chr5:95120190-95120209 MsG0580029310.01.T01:intron 15.0%
!!! AGTTTTAATTCAAAAACATT+AGG + Chr5:95121777-95121796 None:intergenic 15.0%
!!! ATCAATTCATGTTTTTATTT+TGG + Chr5:95122019-95122038 None:intergenic 15.0%
!!! ATTTTTTTTTTTGAGATTGT+TGG - Chr5:95121002-95121021 MsG0580029310.01.T01:intron 15.0%
!!! CATTTTTATAACTGTTATTA+AGG + Chr5:95120260-95120279 None:intergenic 15.0%
!!! TCTCAAAAAAAAAAATTTTG+AGG + Chr5:95120998-95121017 None:intergenic 15.0%
!!! TGTTTTTGAATTAAAACTAA+CGG - Chr5:95121779-95121798 MsG0580029310.01.T01:intron 15.0%
!!! TTTTTTTTTTTGAGATTGTT+GGG - Chr5:95121003-95121022 MsG0580029310.01.T01:intron 15.0%
!! AAAAAAACAATCGTTATACT+AGG - Chr5:95119334-95119353 MsG0580029310.01.T01:CDS 20.0%
!! AAGCCTAAAATTATAACAAA+TGG + Chr5:95120874-95120893 None:intergenic 20.0%
!! AATGAGTGTATATAATAAAG+TGG + Chr5:95121364-95121383 None:intergenic 20.0%
!! ATGAGTGTATATAATAAAGT+GGG + Chr5:95121363-95121382 None:intergenic 20.0%
!! CATTGAATTAATTGATCAAA+TGG + Chr5:95121211-95121230 None:intergenic 20.0%
!! CATTTGATCAATTAATTCAA+TGG - Chr5:95121209-95121228 MsG0580029310.01.T01:intron 20.0%
!! GATACTACTTAAATAGTTAA+GGG - Chr5:95121875-95121894 MsG0580029310.01.T01:intron 20.0%
!! GATACTACTTAAATAGTTAA+GGG + Chr5:95121894-95121875 None:intergenic 20.0%
!! TTAACCAAAACCAATTAATT+TGG + Chr5:95120951-95120970 None:intergenic 20.0%
!! TTTGTTGAAATGATGAAAAT+GGG + Chr5:95122473-95122492 None:intergenic 20.0%
!!! AAAAATACAATTTAGAATGC+CGG - Chr5:95121901-95121920 MsG0580029310.01.T01:intron 20.0%
!!! AATATTTGGAATAATGAAAG+TGG - Chr5:95120204-95120223 MsG0580029310.01.T01:intron 20.0%
!!! AGTTTTAATTCAAAAACGTT+AGG - Chr5:95121652-95121671 MsG0580029310.01.T01:intron 20.0%
!!! ATATTTGGAATAATGAAAGT+GGG - Chr5:95120205-95120224 MsG0580029310.01.T01:intron 20.0%
!!! ATTTGTTGAAATGATGAAAA+TGG + Chr5:95122474-95122493 None:intergenic 20.0%
!!! CGTTTTTGAATTAAAACTAA+CGG + Chr5:95121650-95121669 None:intergenic 20.0%
!!! GTATTTTCTTGCAAAATTTA+AGG + Chr5:95120754-95120773 None:intergenic 20.0%
!!! TCATTTCAACAAATTTTGAT+TGG - Chr5:95121440-95121459 MsG0580029310.01.T01:intron 20.0%
!!! TGTTTTTCTGAAATTTTTCT+AGG + Chr5:95121745-95121764 None:intergenic 20.0%
!!! TTTAATTTACCATTCAATCA+TGG + Chr5:95120900-95120919 None:intergenic 20.0%
! AAAATGGGTATAAATTAGTG+AGG + Chr5:95122458-95122477 None:intergenic 25.0%
! AAGAAAATACCGATATCTAT+AGG - Chr5:95120764-95120783 MsG0580029310.01.T01:intron 25.0%
! AATGAGTGTAAATAATCAAG+TGG - Chr5:95120276-95120295 MsG0580029310.01.T01:intron 25.0%
! ACACTCACCTAAAAATATTA+AGG + Chr5:95120322-95120341 None:intergenic 25.0%
! ATCCTGTCTCATATATATAT+AGG + Chr5:95120397-95120416 None:intergenic 25.0%
! ATGAGTGTAAATAATCAAGT+GGG - Chr5:95120277-95120296 MsG0580029310.01.T01:intron 25.0%
! ATGGCAACAATTCAATTTAA+TGG + Chr5:95121073-95121092 None:intergenic 25.0%
! ATTAAGCATCCTATAGATAT+CGG + Chr5:95120776-95120795 None:intergenic 25.0%
! CGATACTACTTAAATAGTTA+AGG - Chr5:95121874-95121893 MsG0580029310.01.T01:intron 25.0%
! CGATACTACTTAAATAGTTA+AGG + Chr5:95121893-95121874 None:intergenic 25.0%
! CTAATTCGTTCCAAATTAAT+TGG - Chr5:95120938-95120957 MsG0580029310.01.T01:intron 25.0%
! GAATTAAATGATGCCAAATA+TGG - Chr5:95122642-95122661 MsG0580029310.01.T01:intron 25.0%
! GATATGATATGAAGATGAAA+AGG + Chr5:95121699-95121718 None:intergenic 25.0%
! GCAAGTAAATAACTAAAAAG+TGG + Chr5:95119724-95119743 None:intergenic 25.0%
! GTTCATTTCTCTTAATCTAA+AGG - Chr5:95120464-95120483 MsG0580029310.01.T01:intron 25.0%
! TATTCATCAAAATCTTAACG+CGG - Chr5:95120495-95120514 MsG0580029310.01.T01:intron 25.0%
! TCCTGTCTCATATATATATA+GGG + Chr5:95120396-95120415 None:intergenic 25.0%
! TGGCAACAATTCAATTTAAT+GGG + Chr5:95121072-95121091 None:intergenic 25.0%
! TTAATTCAATGGATGAGATT+TGG - Chr5:95121220-95121239 MsG0580029310.01.T01:intron 25.0%
! TTGAATTAAAACTAACGGAA+AGG - Chr5:95121784-95121803 MsG0580029310.01.T01:intron 25.0%
! TTGAATTAAAACTAACGGAA+AGG + Chr5:95121803-95121784 None:intergenic 25.0%
!! ACTTGCACCTTAATATTTTT+AGG - Chr5:95120312-95120331 MsG0580029310.01.T01:intron 25.0%
!! CAAAATTTAAGGAGGTTTTT+CGG + Chr5:95120743-95120762 None:intergenic 25.0%
!! CAATTAATTTGGAACGAATT+AGG + Chr5:95120940-95120959 None:intergenic 25.0%
!! GGGAGTTTAAACAAATTTTA+TGG - Chr5:95121023-95121042 MsG0580029310.01.T01:intron 25.0%
!! TTTTCTTGCAAAATTTAAGG+AGG + Chr5:95120751-95120770 None:intergenic 25.0%
!!! ATACCAACTTACTTTTATGA+AGG - Chr5:95122187-95122206 MsG0580029310.01.T01:intron 25.0%
!!! ATAGCACTACTGTTTTTTTT+TGG - Chr5:95121510-95121529 MsG0580029310.01.T01:intron 25.0%
!!! TTTTGGCTAAATTGCATTTT+TGG - Chr5:95121527-95121546 MsG0580029310.01.T01:intron 25.0%
AAAAGACAATGACATGCTTA+AGG - Chr5:95120144-95120163 MsG0580029310.01.T01:intron 30.0%
AAAGTGAAAATCACACCTTA+AGG - Chr5:95122235-95122254 MsG0580029310.01.T01:intron 30.0%
AAAGTGAGTGTAAATCAGTA+AGG + Chr5:95121418-95121437 None:intergenic 30.0%
AATAAGAGGTTGAAAACATG+AGG + Chr5:95120602-95120621 None:intergenic 30.0%
AATCGTTATACTAGGTCTAT+TGG - Chr5:95119342-95119361 MsG0580029310.01.T01:CDS 30.0%
AATTGAATTGTTGCCATTAC+TGG - Chr5:95121076-95121095 MsG0580029310.01.T01:intron 30.0%
ACACCTTCATAAAAGTAAGT+TGG + Chr5:95122193-95122212 None:intergenic 30.0%
ACCTTCTAACAAAAACAAGT+GGG + Chr5:95119815-95119834 None:intergenic 30.0%
ACTCCCACATAAAAATTAGT+GGG - Chr5:95119750-95119769 MsG0580029310.01.T01:intron 30.0%
AGAAATGAACGCTTAAGATT+TGG + Chr5:95120454-95120473 None:intergenic 30.0%
ATAAAAGACACCTTCACAAA+AGG + Chr5:95122138-95122157 None:intergenic 30.0%
ATGATATGAAGATGAAAAGG+AGG + Chr5:95121696-95121715 None:intergenic 30.0%
ATTCATCAAAATCTTAACGC+GGG - Chr5:95120496-95120515 MsG0580029310.01.T01:intron 30.0%
ATTGAATTGTTGCCATTACT+GGG - Chr5:95121077-95121096 MsG0580029310.01.T01:intron 30.0%
CCTGTCTCATATATATATAG+GGG + Chr5:95120395-95120414 None:intergenic 30.0%
CTATTTAAGTAGTATCGCTT+TGG - Chr5:95121558-95121577 MsG0580029310.01.T01:intron 30.0%
CTATTTAAGTAGTATCGCTT+TGG + Chr5:95121577-95121558 None:intergenic 30.0%
CTGTCTCATATATATATAGG+GGG + Chr5:95120394-95120413 None:intergenic 30.0%
GAAACATCATGGATAATAGA+AGG + Chr5:95120644-95120663 None:intergenic 30.0%
GTATATAATAAAGTGGGTGT+AGG + Chr5:95121357-95121376 None:intergenic 30.0%
GTGTATAATCAAGTAAGTGT+AGG + Chr5:95122397-95122416 None:intergenic 30.0%
TACAAAATGTATCATGTCAC+CGG + Chr5:95119520-95119539 None:intergenic 30.0%
TAGAAAATGTATCATGTCAC+CGG + Chr5:95121923-95121942 None:intergenic 30.0%
TAGCAAATCCTATAGACATT+TGG + Chr5:95119785-95119804 None:intergenic 30.0%
TCTTATCTTCTCAGAAGTTT+CGG - Chr5:95119375-95119394 MsG0580029310.01.T01:CDS 30.0%
TTATAGCAACATACACCTTA+GGG - Chr5:95119838-95119857 MsG0580029310.01.T01:intron 30.0%
! AATGTACAATCTCACCTTTT+TGG + Chr5:95119432-95119451 None:intergenic 30.0%
! ACACCCACTAATTTTTATGT+GGG + Chr5:95119756-95119775 None:intergenic 30.0%
! ACCGTTAGAAGTTATTTCAT+GGG - Chr5:95119571-95119590 MsG0580029310.01.T01:CDS 30.0%
! ATGTACAATCTCACCTTTTT+GGG + Chr5:95119431-95119450 None:intergenic 30.0%
! GTTGAAAACATGAGGTTTTA+GGG + Chr5:95120594-95120613 None:intergenic 30.0%
! TTGCACCTTATAGTGTTTTT+AGG + Chr5:95120016-95120035 None:intergenic 30.0%
! TTTTATCAAGCAACACCTTA+AGG + Chr5:95122253-95122272 None:intergenic 30.0%
!! ACTTACACCTTACTGTTTTT+AGG + Chr5:95122368-95122387 None:intergenic 30.0%
!! AGTTTGTTAACTTGCATCTT+AGG - Chr5:95120342-95120361 MsG0580029310.01.T01:intron 30.0%
!! CGTTCCAAATTAATTGGTTT+TGG - Chr5:95120944-95120963 MsG0580029310.01.T01:intron 30.0%
!! GTTTGTTAACTTGCATCTTA+GGG - Chr5:95120343-95120362 MsG0580029310.01.T01:intron 30.0%
!! TCTAGGATTCTTGTTGTTTA+AGG + Chr5:95121728-95121747 None:intergenic 30.0%
!! TCTGAAGGCATTATTATCAA+GGG + Chr5:95119493-95119512 None:intergenic 30.0%
!! TTCTGAAGGCATTATTATCA+AGG + Chr5:95119494-95119513 None:intergenic 30.0%
!! TTCTTGTTGTTTAAGGTTGA+TGG + Chr5:95121721-95121740 None:intergenic 30.0%
!!! ACCTTATAGTGTTTTTAGGT+GGG + Chr5:95120012-95120031 None:intergenic 30.0%
AAGTGGTTAAATACACCCTA+AGG + Chr5:95119856-95119875 None:intergenic 35.0%
AAGTGGTTAATTACACCCTA+AGG + Chr5:95119707-95119726 None:intergenic 35.0%
AATAATGCCTTCAGAAATGC+CGG - Chr5:95119498-95119517 MsG0580029310.01.T01:CDS 35.0%
AATAATTGGGTGGGGAAATT+GGG - Chr5:95120836-95120855 MsG0580029310.01.T01:intron 35.0%
ACATCCTCTAATACCCAAAA+AGG - Chr5:95119415-95119434 MsG0580029310.01.T01:CDS 35.0%
ACCCACCTAAAAACACTATA+AGG - Chr5:95120008-95120027 MsG0580029310.01.T01:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - Chr5:95119899-95119918 MsG0580029310.01.T01:intron 35.0%
ATGTGTAACAGAGAGAAGTT+AGG + Chr5:95121616-95121635 None:intergenic 35.0%
CACCTTCTAACAAAAACAAG+TGG + Chr5:95119816-95119835 None:intergenic 35.0%
CACTCCCACATAAAAATTAG+TGG - Chr5:95119749-95119768 MsG0580029310.01.T01:intron 35.0%
CATAGTGATATCATCATGCA+TGG - Chr5:95122924-95122943 MsG0580029310.01.T01:CDS 35.0%
CATGAAATAACTTCTAACGG+TGG + Chr5:95119572-95119591 None:intergenic 35.0%
CCCCATGAAATAACTTCTAA+CGG + Chr5:95119575-95119594 None:intergenic 35.0%
CCCCTATATATATATGAGAC+AGG - Chr5:95120392-95120411 MsG0580029310.01.T01:intron 35.0%
GAAAGGACCAAAATGTGTTA+CGG - Chr5:95121801-95121820 MsG0580029310.01.T01:intron 35.0%
GAAATTTCTACCTCCAACAA+TGG + Chr5:95120676-95120695 None:intergenic 35.0%
GTAAATAATCAAGTGGGTGT+AGG - Chr5:95120283-95120302 MsG0580029310.01.T01:intron 35.0%
GTGTTCTACCAAATGTCTAT+AGG - Chr5:95119774-95119793 MsG0580029310.01.T01:intron 35.0%
GTTATAGCAACATACACCTT+AGG - Chr5:95119837-95119856 MsG0580029310.01.T01:intron 35.0%
TGAGTGTAAATCAGTAAGGT+GGG + Chr5:95121414-95121433 None:intergenic 35.0%
TGATAAAAGACACCACCAAA+GGG - Chr5:95122265-95122284 MsG0580029310.01.T01:intron 35.0%
TGGTAAATTAAAATGCCACC+AGG - Chr5:95120908-95120927 MsG0580029310.01.T01:intron 35.0%
TGTGTAACAGAGAGAAGTTA+GGG + Chr5:95121615-95121634 None:intergenic 35.0%
TTATGTTACAAGACACCCTT+TGG + Chr5:95122283-95122302 None:intergenic 35.0%
TTGATAAAAGACACCACCAA+AGG - Chr5:95122264-95122283 MsG0580029310.01.T01:intron 35.0%
TTTAGCAAAGCTACACCTTA+GGG - Chr5:95119689-95119708 MsG0580029310.01.T01:intron 35.0%
TTTCCATCATTTGCCATTGT+TGG - Chr5:95120660-95120679 MsG0580029310.01.T01:intron 35.0%
! ACTTGCATCTTAGGGTTTTT+AGG - Chr5:95120351-95120370 MsG0580029310.01.T01:intron 35.0%
! AGGCTTTTACCATGATTGAA+TGG - Chr5:95120888-95120907 MsG0580029310.01.T01:intron 35.0%
! ATAGAAGACACCTTTTGTGA+AGG - Chr5:95122125-95122144 MsG0580029310.01.T01:intron 35.0%
! CACACCCACTAATTTTTATG+TGG + Chr5:95119757-95119776 None:intergenic 35.0%
! CACCGTTAGAAGTTATTTCA+TGG - Chr5:95119570-95119589 MsG0580029310.01.T01:CDS 35.0%
! CCGTTAGAAGTTATTTCATG+GGG - Chr5:95119572-95119591 MsG0580029310.01.T01:CDS 35.0%
! CTTCTCTCTGTTACACATTT+TGG - Chr5:95121618-95121637 MsG0580029310.01.T01:intron 35.0%
! GGTTGAAAACATGAGGTTTT+AGG + Chr5:95120595-95120614 None:intergenic 35.0%
! TTTTAGCAAAGCTACACCTT+AGG - Chr5:95119688-95119707 MsG0580029310.01.T01:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + Chr5:95119905-95119924 None:intergenic 35.0%
!!! ACCCACTTGTTTTTGTTAGA+AGG - Chr5:95119811-95119830 MsG0580029310.01.T01:intron 35.0%
!!! CACCTTATAGTGTTTTTAGG+TGG + Chr5:95120013-95120032 None:intergenic 35.0%
AAATATGGAAGCTATGGTGG+GGG - Chr5:95122657-95122676 MsG0580029310.01.T01:intron 40.0%
AACCGTGGTGGTAATTATGA+TGG - Chr5:95122747-95122766 MsG0580029310.01.T01:intron 40.0%
ACACCTGCCTAAAAACAGTA+AGG - Chr5:95122358-95122377 MsG0580029310.01.T01:intron 40.0%
ACTCCCACGTAAAAACTAGT+GGG + Chr5:95119667-95119686 None:intergenic 40.0%
AGACAAAAAGCTTTCCGAAG+TGG + Chr5:95122524-95122543 None:intergenic 40.0%
ATTGTTGCCATTACTGGGAT+CGG - Chr5:95121082-95121101 MsG0580029310.01.T01:intron 40.0%
CAAATATGGAAGCTATGGTG+GGG - Chr5:95122656-95122675 MsG0580029310.01.T01:intron 40.0%
CAATAATTGGGTGGGGAAAT+TGG - Chr5:95120835-95120854 MsG0580029310.01.T01:intron 40.0%
CACCATCATAATTACCACCA+CGG + Chr5:95122752-95122771 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG - Chr5:95119898-95119917 MsG0580029310.01.T01:intron 40.0%
CATGAAGATTCAACACCCTT+GGG - Chr5:95120810-95120829 MsG0580029310.01.T01:intron 40.0%
CCAAATATGGAAGCTATGGT+GGG - Chr5:95122655-95122674 MsG0580029310.01.T01:intron 40.0%
CGTACGTAATGTGTTTGCAA+AGG - Chr5:95122602-95122621 MsG0580029310.01.T01:intron 40.0%
GAACGAATTAGGATACTACC+TGG + Chr5:95120929-95120948 None:intergenic 40.0%
GATGCCAAATATGGAAGCTA+TGG - Chr5:95122651-95122670 MsG0580029310.01.T01:intron 40.0%
GGAGGTAATTATTGTCGCTA+TGG - Chr5:95122803-95122822 MsG0580029310.01.T01:intron 40.0%
GTGAGTGTAAATCAGTAAGG+TGG + Chr5:95121415-95121434 None:intergenic 40.0%
GTGTAACAGAGAGAAGTTAG+GGG + Chr5:95121614-95121633 None:intergenic 40.0%
GTGTTACGGAGAGAAGTTAA+GGG - Chr5:95121815-95121834 MsG0580029310.01.T01:intron 40.0%
TAACGGTGGAGTCATTATGA+AGG + Chr5:95119558-95119577 None:intergenic 40.0%
TAACGGTGGAGTCATTATGA+CGG + Chr5:95119558-95119577 None:intergenic 40.0%
TCAATATAACCGTTGACACC+TGG - Chr5:95121245-95121264 MsG0580029310.01.T01:intron 40.0%
TCATGAAGATTCAACACCCT+TGG - Chr5:95120809-95120828 MsG0580029310.01.T01:intron 40.0%
TGTGTTACGGAGAGAAGTTA+AGG - Chr5:95121814-95121833 MsG0580029310.01.T01:intron 40.0%
TTTCCTAAATCACTGACACG+AGG + Chr5:95121178-95121197 None:intergenic 40.0%
! AGTGTTGTTCTCAGTTTGCA+CGG + Chr5:95122894-95122913 None:intergenic 40.0%
! CTTCTCTCCGTAACACATTT+TGG + Chr5:95121811-95121830 None:intergenic 40.0%
! GGCAAATGATGGAAACATCA+TGG + Chr5:95120655-95120674 None:intergenic 40.0%
!! AATTATGGTGGTGGTTATCC+TGG - Chr5:95122699-95122718 MsG0580029310.01.T01:intron 40.0%
!! TGCATCTTAGGGTTTTTAGG+TGG - Chr5:95120354-95120373 MsG0580029310.01.T01:intron 40.0%
!!! ACACCCACTAGTTTTTACGT+GGG - Chr5:95119661-95119680 MsG0580029310.01.T01:CDS 40.0%
!!! ACACCTTACTGTTTTTAGGC+AGG + Chr5:95122364-95122383 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + Chr5:95119906-95119925 None:intergenic 40.0%
!!! CTCACCTTTTTGGGTATTAG+AGG + Chr5:95119422-95119441 None:intergenic 40.0%
!!! GCATCTTAGGGTTTTTAGGT+GGG - Chr5:95120355-95120374 MsG0580029310.01.T01:intron 40.0%
AATTACCACCACGGTTTCCA+GGG + Chr5:95122743-95122762 None:intergenic 45.0%
ACACACACACACACACACTA+AGG - Chr5:95121318-95121337 MsG0580029310.01.T01:intron 45.0%
ACACCCTTGGGAGCAATAAT+TGG - Chr5:95120822-95120841 MsG0580029310.01.T01:intron 45.0%
AGAGAAAAAGCTTCCCGAAG+TGG + Chr5:95121484-95121503 None:intergenic 45.0%
ATCATGCATGGTGCACTTCT+CGG - Chr5:95122936-95122955 MsG0580029310.01.T01:CDS 45.0%
ATTGTGTGTCGTCACCACTT+CGG - Chr5:95122507-95122526 MsG0580029310.01.T01:intron 45.0%
ATTGTGTGTCGTGACCACTT+CGG - Chr5:95121467-95121486 MsG0580029310.01.T01:intron 45.0%
CACCCAATTATTGCTCCCAA+GGG + Chr5:95120828-95120847 None:intergenic 45.0%
CACCCTTGGGAGCAATAATT+GGG - Chr5:95120823-95120842 MsG0580029310.01.T01:intron 45.0%
CACTCCCACGTAAAAACTAG+TGG + Chr5:95119668-95119687 None:intergenic 45.0%
CCATCATTTGCCATTGTTGG+AGG - Chr5:95120663-95120682 MsG0580029310.01.T01:intron 45.0%
CCCACCATAGCTTCCATATT+TGG + Chr5:95122658-95122677 None:intergenic 45.0%
CCTCCAACAATGGCAAATGA+TGG + Chr5:95120666-95120685 None:intergenic 45.0%
CGAATTAGGATACTACCTGG+TGG + Chr5:95120926-95120945 None:intergenic 45.0%
CGTGGTGGTAATTATGATGG+TGG - Chr5:95122750-95122769 MsG0580029310.01.T01:intron 45.0%
CTTCTCAGAAGTTTCGGCTA+GGG - Chr5:95119381-95119400 MsG0580029310.01.T01:CDS 45.0%
CTTGGGAGCAATAATTGGGT+GGG - Chr5:95120827-95120846 MsG0580029310.01.T01:intron 45.0%
GCCAAATATGGAAGCTATGG+TGG - Chr5:95122654-95122673 MsG0580029310.01.T01:intron 45.0%
GGTATTATGGGAGTTGCAGA+AGG - Chr5:95122840-95122859 MsG0580029310.01.T01:intron 45.0%
GTGTGTGTGTGTATAGAGTC+AGG + Chr5:95121282-95121301 None:intergenic 45.0%
GTTGCGGTTACGGGTATTAT+GGG - Chr5:95122828-95122847 MsG0580029310.01.T01:intron 45.0%
TAATTACCACCACGGTTTCC+AGG + Chr5:95122744-95122763 None:intergenic 45.0%
TATTGTCGCTATGGCTGTTG+CGG - Chr5:95122812-95122831 MsG0580029310.01.T01:intron 45.0%
TCACCTCGTGTCAGTGATTT+AGG - Chr5:95121172-95121191 MsG0580029310.01.T01:intron 45.0%
TCTTCTCAGAAGTTTCGGCT+AGG - Chr5:95119380-95119399 MsG0580029310.01.T01:CDS 45.0%
TGTTACAAGACACCCTTTGG+TGG + Chr5:95122280-95122299 None:intergenic 45.0%
TGTTGCGGTTACGGGTATTA+TGG - Chr5:95122827-95122846 MsG0580029310.01.T01:intron 45.0%
TTAACGAACTCGTTGACACC+TGG + Chr5:95120429-95120448 None:intergenic 45.0%
TTGGGAGCAATAATTGGGTG+GGG - Chr5:95120828-95120847 MsG0580029310.01.T01:intron 45.0%
!! AGAAGGTGTTGCTCATATGC+TGG - Chr5:95122857-95122876 MsG0580029310.01.T01:intron 45.0%
!! GGTGGTAATTATGATGGTGG+TGG - Chr5:95122753-95122772 MsG0580029310.01.T01:intron 45.0%
!!! CACACCCACTAGTTTTTACG+TGG - Chr5:95119660-95119679 MsG0580029310.01.T01:CDS 45.0%
!! TATATATATATATATATATG+GGG - Chr5:95119627-95119646 MsG0580029310.01.T01:CDS 5.0%
!!! ATATATATATGTTTTTATTT+TGG + Chr5:95119614-95119633 None:intergenic 5.0%
ACGTGAGCGTAACTAGTGTG+CGG - Chr5:95121148-95121167 MsG0580029310.01.T01:intron 50.0%
AGACAGGATCTGTTGACACC+AGG - Chr5:95120408-95120427 MsG0580029310.01.T01:intron 50.0%
CATGTCACCGGCATTTCTGA+AGG + Chr5:95119508-95119527 None:intergenic 50.0%
CCACCCAATTATTGCTCCCA+AGG + Chr5:95120829-95120848 None:intergenic 50.0%
CCATAATTACCACCACGACC+AGG + Chr5:95122687-95122706 None:intergenic 50.0%
CCTGGTCGTGGTGGTAATTA+TGG - Chr5:95122684-95122703 MsG0580029310.01.T01:intron 50.0%
CCTTGGGAGCAATAATTGGG+TGG - Chr5:95120826-95120845 MsG0580029310.01.T01:intron 50.0%
CGTGGTGGTAATTATGGTGG+TGG - Chr5:95122690-95122709 MsG0580029310.01.T01:intron 50.0%
GGTCGTGGTGGTAATTATGG+TGG - Chr5:95122687-95122706 MsG0580029310.01.T01:intron 50.0%
TTACCTCCACAGTACCACCA+CGG + Chr5:95122791-95122810 None:intergenic 50.0%
TTGCCATTACTGGGATCGGT+GGG - Chr5:95121086-95121105 MsG0580029310.01.T01:intron 50.0%
TTGTGTGTCGTGACCACTTC+GGG - Chr5:95121468-95121487 MsG0580029310.01.T01:intron 50.0%
!! TATGATGGTGGTGGTTACCC+TGG - Chr5:95122762-95122781 MsG0580029310.01.T01:intron 50.0%
AAACCGTGGTGGTACTGTGG+AGG - Chr5:95122785-95122804 MsG0580029310.01.T01:intron 55.0%
ACAGTACCACCACGGTTTCC+AGG + Chr5:95122783-95122802 None:intergenic 55.0%
AGTCAGGATCCGTTGACACC+AGG + Chr5:95121266-95121285 None:intergenic 55.0%
CAGTACCACCACGGTTTCCA+GGG + Chr5:95122782-95122801 None:intergenic 55.0%
CCGTTGACACCAGGTGTCAA+CGG + Chr5:95121257-95121276 None:intergenic 55.0%
CGCTATGGCTGTTGCGGTTA+CGG - Chr5:95122818-95122837 MsG0580029310.01.T01:intron 55.0%
CGTGAGCGTAACTAGTGTGC+GGG - Chr5:95121149-95121168 MsG0580029310.01.T01:intron 55.0%
GCTATGGCTGTTGCGGTTAC+GGG - Chr5:95122819-95122838 MsG0580029310.01.T01:intron 55.0%
GGTGGTTATCCTGGAAACCG+TGG - Chr5:95122708-95122727 MsG0580029310.01.T01:intron 55.0%
GGTTATCCTGGAAACCGTGG+TGG - Chr5:95122711-95122730 MsG0580029310.01.T01:intron 55.0%
GTTGCCATTACTGGGATCGG+TGG - Chr5:95121085-95121104 MsG0580029310.01.T01:intron 55.0%
TAACCACCACCACGGTTTCC+AGG + Chr5:95122720-95122739 None:intergenic 55.0%
TATCCTGGAAACCGTGGTGG+TGG - Chr5:95122714-95122733 MsG0580029310.01.T01:intron 55.0%
TGCCATTACTGGGATCGGTG+GGG - Chr5:95121087-95121106 MsG0580029310.01.T01:intron 55.0%
TGGAAACCGTGGTGGTACTG+TGG - Chr5:95122782-95122801 MsG0580029310.01.T01:intron 55.0%
TTCCAGGGTAACCACCACCA+CGG + Chr5:95122728-95122747 None:intergenic 55.0%
! CCGTTGACACCTGGTGTCAA+CGG - Chr5:95121254-95121273 MsG0580029310.01.T01:intron 55.0%
GCCATTACTGGGATCGGTGG+GGG - Chr5:95121088-95121107 MsG0580029310.01.T01:intron 60.0%
GGTGGTTACCCTGGAAACCG+TGG - Chr5:95122732-95122751 MsG0580029310.01.T01:intron 60.0%
GGTTACCCTGGAAACCGTGG+TGG - Chr5:95122735-95122754 MsG0580029310.01.T01:intron 60.0%
TCCCCCACCGATCCCAGTAA+TGG + Chr5:95121092-95121111 None:intergenic 60.0%
! AGCTATGGTGGGGGCTATCC+TGG - Chr5:95122666-95122685 MsG0580029310.01.T01:intron 60.0%
!! AACCGTGGTGGTGGTTACCC+TGG - Chr5:95122723-95122742 MsG0580029310.01.T01:intron 60.0%
GGGGGCTATCCTGGTCGTGG+TGG - Chr5:95122675-95122694 MsG0580029310.01.T01:intron 70.0%
GGTGGGGGCTATCCTGGTCG+TGG - Chr5:95122672-95122691 MsG0580029310.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 95119325 95122977 95119325 ID=MsG0580029310.01;Name=MsG0580029310.01
Chr5 mRNA 95119325 95122977 95119325 ID=MsG0580029310.01.T01;Parent=MsG0580029310.01;Name=MsG0580029310.01.T01;_AED=0.69;_eAED=0.69;_QI=0|0|0|1|0|0|2|0|155
Chr5 exon 95119325 95119680 95119325 ID=MsG0580029310.01.T01:exon:50153;Parent=MsG0580029310.01.T01
Chr5 exon 95122866 95122977 95122866 ID=MsG0580029310.01.T01:exon:50152;Parent=MsG0580029310.01.T01
Chr5 CDS 95122866 95122977 95122866 ID=MsG0580029310.01.T01:cds;Parent=MsG0580029310.01.T01
Chr5 CDS 95119325 95119680 95119325 ID=MsG0580029310.01.T01:cds;Parent=MsG0580029310.01.T01
Gene Sequence

>MsG0580029310.01.T01

ATGGATTCGAAAAAAACAATCGTTATACTAGGTCTATTGGCTATCATTCTTCTTATCTTCTCAGAAGTTTCGGCTAGGGACTTAACTGAGACATCCTCTAATACCCAAAAAGAGGTAGATGATCAAACAAATGAATTAAATGATGCCAAATATGGAAGCTATGGTGGGGGCTATCCTGGTCGTGGTGGTAATTATGGTGGTGGTTATCCTGGAAACCGTGGTGGTGGTTACCCTGGAAACCGTGGTGGTAATTATGATGGTGGTGGTTACCCTGGAAACCGTGGTGGTACTGTGGAGGTAATTATTGTCGCTATGGCTGTTGCGGTTACGGGTATTATGGGAGTTGCAGAAGGTGTTGCTCATATGCTGGTGAAGCTGTTGCCGTGCAAACTGAGAACAACACTCGTAACTGATCATAGTGATATCATCATGCATGGTGCACTTCTCGGTAATAAATTTCATGCATAA

Protein sequence

>MsG0580029310.01.T01

MDSKKTIVILGLLAIILLIFSEVSARDLTETSSNTQKEVDDQTNELNDAKYGSYGGGYPGRGGNYGGGYPGNRGGGYPGNRGGNYDGGGYPGNRGGTVEVIIVAMAVAVTGIMGVAEGVAHMLVKLLPCKLRTTLVTDHSDIIMHGALLGNKFHA*