AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005085.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005085.01.T01 MTR_1g092900 99.389 491 3 0 1 491 1 491 0.0 1008
MsG0180005085.01.T01 MTR_1g092910 61.297 478 119 9 18 491 4 419 0.0 523
MsG0180005085.01.T01 MTR_1g092910 61.347 401 103 6 91 491 35 383 1.81e-155 448
MsG0180005085.01.T01 MTR_7g088990 50.273 183 82 6 52 231 3 179 4.72e-45 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005085.01.T01 AT5G05100 36.873 339 143 10 63 399 6 275 4.97e-48 169
MsG0180005085.01.T01 AT3G56680 33.716 436 168 16 52 482 8 327 7.58e-47 166
MsG0180005085.01.T01 AT3G10770 52.866 157 71 2 68 223 11 165 1.60e-44 159
MsG0180005085.01.T01 AT3G10770 52.866 157 71 2 68 223 11 165 1.85e-44 159
MsG0180005085.01.T01 AT2G40960 51.412 177 76 5 49 223 2 170 1.80e-41 152
MsG0180005085.01.T01 AT2G40960 51.412 177 76 5 49 223 2 170 1.80e-41 152

Find 179 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTCCAACATCCTATTTA+AGG 0.096982 1:+86767937 MsG0180005085.01.T01:CDS
TTTAGGGTTAATGGGAATTT+TGG 0.131911 1:-86766686 None:intergenic
TGTTGCCTTGTCTCACATTC+TGG 0.182811 1:-86768317 None:intergenic
CCAACTTGATTAGGATTAAA+TGG 0.206036 1:-86770487 None:intergenic
TTCTTCTTCGTCGCTTTCTA+TGG 0.222007 1:+86766803 MsG0180005085.01.T01:exon
CAAAGATTTGATCCTGGATT+TGG 0.227109 1:+86770241 MsG0180005085.01.T01:CDS
AATGGTGACATCATGGTTTC+TGG 0.228814 1:-86770469 None:intergenic
CCTCTCCCGCAGCATATATC+AGG 0.228933 1:+86770385 MsG0180005085.01.T01:CDS
AGAGGAAAGAGGAATATAAT+AGG 0.231939 1:+86768240 MsG0180005085.01.T01:CDS
AATTGTTTACCGGATGGTTC+TGG 0.247085 1:+86768020 MsG0180005085.01.T01:CDS
ATTTCTAGCCCTACTGGTAT+TGG 0.298629 1:-86768573 None:intergenic
GTTGGTGTTCTGCGGATCGC+TGG 0.303040 1:-86770357 None:intergenic
GATTGGTACAAGTTACAAAT+TGG 0.314559 1:-86766648 None:intergenic
AATTTCACGGTCCCGGAATA+TGG 0.319652 1:-86768645 None:intergenic
TCTGCAACCTCCCATGATTC+CGG 0.323270 1:-86766855 None:intergenic
TTCTTCAACATATACCAATA+GGG 0.325286 1:+86768433 MsG0180005085.01.T01:CDS
GTAGGTACAGGCAAAGTAAT+AGG 0.330396 1:+86768618 MsG0180005085.01.T01:CDS
ACACCTGCTGGAATTGGATA+TGG 0.331501 1:+86770442 MsG0180005085.01.T01:CDS
GTAATAGGGTGGCCATATTC+CGG 0.334730 1:+86768633 MsG0180005085.01.T01:CDS
CAATCAACACCTGCTGGAAT+TGG 0.335806 1:+86770436 MsG0180005085.01.T01:CDS
CAGAAGGTTCAAGCGTTTCA+TGG 0.338603 1:-86766889 None:intergenic
GTTCTTCAACATATACCAAT+AGG 0.348397 1:+86768432 MsG0180005085.01.T01:CDS
TTACAAATTGGAAGCGAGAT+AGG 0.352037 1:-86766636 None:intergenic
GAGTGTATACCAACTTGATT+AGG 0.362197 1:-86770496 None:intergenic
ACAGGATAATAATTGTTTAC+CGG 0.365566 1:+86768010 MsG0180005085.01.T01:CDS
CTGCAACCTCCCATGATTCC+GGG 0.367936 1:-86766854 None:intergenic
ATATGTTCGGGATGGATAAA+AGG 0.370624 1:-86770574 None:intergenic
CAGAAGCAGACACAGACTTT+TGG 0.371064 1:+86768167 MsG0180005085.01.T01:CDS
TTGGTGTTCTGCGGATCGCT+GGG 0.374142 1:-86770356 None:intergenic
GTGTGCAGCCAACCTTAAAT+AGG 0.376238 1:-86767949 None:intergenic
ATCTTTAACTCGAGCAATAA+TGG 0.383921 1:+86768275 MsG0180005085.01.T01:CDS
ATATCAGGGCAGCATATATC+AGG 0.386484 1:+86770400 MsG0180005085.01.T01:CDS
GAAGAATTTCATGGAAGGTT+TGG 0.388021 1:-86766710 None:intergenic
CTCCGATGATGCCGTTAATC+AGG 0.389844 1:+86767001 MsG0180005085.01.T01:CDS
ATACCAGTAGGGCTAGAAAT+AGG 0.394067 1:+86768576 MsG0180005085.01.T01:CDS
TAATAGGGTGGCCATATTCC+GGG 0.399528 1:+86768634 MsG0180005085.01.T01:CDS
GATCCTGGATTTGGATTCAA+TGG 0.402338 1:+86770250 MsG0180005085.01.T01:CDS
GCATTATTCGTTGCAATCAA+TGG 0.407262 1:+86767983 MsG0180005085.01.T01:CDS
AAACTGATCAACCTGATTAA+CGG 0.412515 1:-86767012 None:intergenic
AAAAGGCTGGTGAATATGTT+CGG 0.422430 1:-86770587 None:intergenic
TGTGTCTGCTTCTGTGGCCT+CGG 0.426075 1:-86768158 None:intergenic
ATTGTTTACCGGATGGTTCT+GGG 0.426305 1:+86768021 MsG0180005085.01.T01:CDS
TCATAGCTTCTGTCATAATC+AGG 0.427210 1:-86768680 None:intergenic
GGATGGATAAAAGGCATTCC+CGG 0.427251 1:-86770565 None:intergenic
ATGTCTGCAAGGCGAATAAC+AGG 0.429094 1:-86768083 None:intergenic
GGTGCATACATTGGCTGCAT+TGG 0.430143 1:-86770283 None:intergenic
TGTCCTATTTCTAGCCCTAC+TGG 0.433903 1:-86768579 None:intergenic
GGCAATGCAAATTCAAACTC+AGG 0.444513 1:+86768188 MsG0180005085.01.T01:CDS
TGCGGTCAATTTCACGGTCC+CGG 0.447048 1:-86768652 None:intergenic
ATTGAAGAAGAGGACGAATT+CGG 0.447375 1:-86766963 None:intergenic
GATCCTTGCGGTCAATTTCA+CGG 0.447595 1:-86768658 None:intergenic
GAGGAAAGAGGAATATAATA+GGG 0.447747 1:+86768241 MsG0180005085.01.T01:CDS
GTGCATACATTGGCTGCATT+GGG 0.458132 1:-86770282 None:intergenic
TTGGAGGAGCCCCGGAATCA+TGG 0.459072 1:+86766844 MsG0180005085.01.T01:CDS
AGGAGCCAGTTGGTAGGTAC+AGG 0.460319 1:+86768606 MsG0180005085.01.T01:CDS
CTTTGCCTGTACCTACCAAC+TGG 0.466995 1:-86768611 None:intergenic
ATCGGCGTTAGAATCTTTGT+TGG 0.467108 1:-86766919 None:intergenic
GAGGGCTCTTCAGAGGATCT+TGG 0.468262 1:+86766825 MsG0180005085.01.T01:CDS
AAAGTCTGTGTCTGCTTCTG+TGG 0.468620 1:-86768164 None:intergenic
GGCAGCATATATCAGGAACT+TGG 0.479091 1:+86770407 MsG0180005085.01.T01:CDS
AACACCGAGTTTCCACAGCT+TGG 0.482932 1:+86770319 MsG0180005085.01.T01:CDS
TTTAAGGTTGGCTGCACACC+GGG 0.483163 1:+86767953 MsG0180005085.01.T01:CDS
TGAAACGGTGGAATCTGATT+CGG 0.486012 1:-86766755 None:intergenic
CCACAGCTTGGATCCCCTCA+TGG 0.487911 1:+86770331 MsG0180005085.01.T01:CDS
AGAATGTGAGACAAGGCAAC+AGG 0.488090 1:+86768319 MsG0180005085.01.T01:CDS
TCTTCGTCGCTTTCTATGGA+GGG 0.489586 1:+86766807 MsG0180005085.01.T01:exon
AAGTGTGGAAGAGAGGAAAG+AGG 0.489811 1:+86768229 MsG0180005085.01.T01:CDS
ATTGCTCGAGTTAAAGATCC+TGG 0.492391 1:-86768270 None:intergenic
AGGATTAAATGGTGACATCA+TGG 0.495163 1:-86770476 None:intergenic
CCTGATATATGCTGCGGGAG+AGG 0.498173 1:-86770385 None:intergenic
TACAAATTGGAAGCGAGATA+GGG 0.498432 1:-86766635 None:intergenic
ATCTGATGTTAGTTCCAGTA+GGG 0.499183 1:+86768400 MsG0180005085.01.T01:CDS
TCCAACATCCTATTTAAGGT+TGG 0.504543 1:+86767941 MsG0180005085.01.T01:CDS
TAGGTACAGGCAAAGTAATA+GGG 0.509520 1:+86768619 MsG0180005085.01.T01:CDS
TTCTTCGTCGCTTTCTATGG+AGG 0.510584 1:+86766806 MsG0180005085.01.T01:exon
TTCCTCTCTGTTTACTCGCG+TGG 0.514077 1:+86768358 MsG0180005085.01.T01:CDS
CCATTTAATCCTAATCAAGT+TGG 0.515418 1:+86770487 MsG0180005085.01.T01:CDS
GCTGCCTATACCTGTGCAAA+AGG 0.517593 1:-86770604 None:intergenic
CCTATACCTGTGCAAAAGGC+TGG 0.519619 1:-86770600 None:intergenic
GGAATCTGATTCGGATAGAA+TGG 0.520035 1:-86766746 None:intergenic
TCAGTATCCTTGTCAGCACC+CGG 0.520569 1:+86770546 MsG0180005085.01.T01:CDS
ATATGCTGCGGGAGAGGCCG+TGG 0.521113 1:-86770379 None:intergenic
TGGAGGAGCCCCGGAATCAT+GGG 0.521603 1:+86766845 MsG0180005085.01.T01:CDS
ATCTTCAACTAATACCAGTA+GGG 0.521921 1:+86768499 MsG0180005085.01.T01:CDS
AGTTTGCGTGAAGAATTTCA+TGG 0.522411 1:-86766719 None:intergenic
AACTAATACGAGTAGGGGAC+TGG 0.523065 1:+86768472 MsG0180005085.01.T01:CDS
ATCTTCAGCTAATACCAGTA+GGG 0.523225 1:+86768532 MsG0180005085.01.T01:CDS
AATATAATAGGGCTCGTGCC+AGG 0.523772 1:+86768252 MsG0180005085.01.T01:CDS
ATTCCAGCAGGTGTTGATTG+TGG 0.524942 1:-86770433 None:intergenic
ATTAAGGAAACTTACTTGAA+AGG 0.528046 1:-86767067 None:intergenic
AGCAATAATGGTGGTACAGT+GGG 0.528207 1:+86768287 MsG0180005085.01.T01:CDS
ATCTTCAACTAATACGAGTA+GGG 0.528794 1:+86768466 MsG0180005085.01.T01:CDS
TATCTGATGTTAGTTCCAGT+AGG 0.530930 1:+86768399 MsG0180005085.01.T01:CDS
GGCATTCCCGGGTGCTGACA+AGG 0.531187 1:-86770553 None:intergenic
GATAATAATTGTTTACCGGA+TGG 0.532729 1:+86768014 MsG0180005085.01.T01:CDS
CCTCCATTGAATCCAAATCC+AGG 0.533115 1:-86770253 None:intergenic
ATGCGGCGAAGCAGCACCAT+CGG 0.534406 1:-86766937 None:intergenic
ATCACCACTGATTGAAGAAG+AGG 0.540224 1:-86766973 None:intergenic
TATATGCAAAGATTTGATCC+TGG 0.540292 1:+86770235 MsG0180005085.01.T01:CDS
TTCACAATCGGTGCATACAT+TGG 0.542249 1:-86770292 None:intergenic
AACCTGATTAACGGCATCAT+CGG 0.545803 1:-86767003 None:intergenic
GGTGTTCTGCGGATCGCTGG+GGG 0.546387 1:-86770354 None:intergenic
CTTTGTTGGATGAAATCAGA+AGG 0.546615 1:-86766905 None:intergenic
ATTCTTGACCCAGAACCATC+CGG 0.547412 1:-86768029 None:intergenic
AATCTTCAACTAATACGAGT+AGG 0.547584 1:+86768465 MsG0180005085.01.T01:CDS
TTCTATGGAGGGCTCTTCAG+AGG 0.551805 1:+86766818 MsG0180005085.01.T01:exon
ACGAATAATGCTGAGCCACC+CGG 0.555253 1:-86767971 None:intergenic
GTTCCACAATCAACACCTGC+TGG 0.557884 1:+86770430 MsG0180005085.01.T01:CDS
AATAATGGTGGTACAGTGGG+TGG 0.558355 1:+86768290 MsG0180005085.01.T01:CDS
ATTCTTCGAGGGTTATGAAA+CGG 0.559474 1:-86766770 None:intergenic
AATCTTCAACTAATACCAGT+AGG 0.560525 1:+86768498 MsG0180005085.01.T01:CDS
TCGGTGTTGTAATTCACAAT+CGG 0.560966 1:-86770304 None:intergenic
TGGTGTTCTGCGGATCGCTG+GGG 0.562061 1:-86770355 None:intergenic
AGAGGATCTTGGAGGAGCCC+CGG 0.564212 1:+86766836 MsG0180005085.01.T01:CDS
GCCAACCTTAAATAGGATGT+TGG 0.565511 1:-86767942 None:intergenic
AAGACGAAGAAGATTCTTCG+AGG 0.565979 1:-86766782 None:intergenic
AATCTTCAGCTAATACCAGT+AGG 0.566716 1:+86768531 MsG0180005085.01.T01:CDS
GGCTCTTCAGAGGATCTTGG+AGG 0.567773 1:+86766828 MsG0180005085.01.T01:CDS
ATTTAAGGTTGGCTGCACAC+CGG 0.567821 1:+86767952 MsG0180005085.01.T01:CDS
GGATCCAAGCTGTGGAAACT+CGG 0.569025 1:-86770323 None:intergenic
AATTCAAGCTGCTGTTGATG+AGG 0.569581 1:-86767909 None:intergenic
GATGGATAAAAGGCATTCCC+GGG 0.570531 1:-86770564 None:intergenic
GCTCTAAAAGTGTGGAAGAG+AGG 0.572069 1:+86768222 MsG0180005085.01.T01:CDS
TTTCTGACGGCAATTTAACT+GGG 0.574299 1:-86768106 None:intergenic
TCTTCAACATATACCAATAG+GGG 0.578850 1:+86768434 MsG0180005085.01.T01:CDS
TCGTCCTCTTCTTCAATCAG+TGG 0.578979 1:+86766969 MsG0180005085.01.T01:CDS
GCAATGCAAATTCAAACTCA+GGG 0.580235 1:+86768189 MsG0180005085.01.T01:CDS
AAAGGCTGGTGAATATGTTC+GGG 0.580565 1:-86770586 None:intergenic
TGCGTGAAGAATTTCATGGA+AGG 0.582344 1:-86766715 None:intergenic
AGGCCGTGGTTGGTGTTCTG+CGG 0.583885 1:-86770365 None:intergenic
GCTGCGGGAGAGGCCGTGGT+TGG 0.589413 1:-86770375 None:intergenic
CCATGAGGGGATCCAAGCTG+TGG 0.591346 1:-86770331 None:intergenic
AGAAAACAATGCTGTGATGA+AGG 0.591834 1:+86768124 MsG0180005085.01.T01:CDS
CCTGGATTTGGATTCAATGG+AGG 0.592152 1:+86770253 MsG0180005085.01.T01:CDS
GCAGCATATATCAGGAACTT+GGG 0.593411 1:+86770408 MsG0180005085.01.T01:CDS
AATCTTCAACCAATACCAGT+AGG 0.594321 1:+86768564 MsG0180005085.01.T01:CDS
TGTCCATATCCAATTCCAGC+AGG 0.597109 1:-86770445 None:intergenic
AGACGAAGAAGATTCTTCGA+GGG 0.602584 1:-86766781 None:intergenic
CTCTCCCGCAGCATATATCA+GGG 0.602610 1:+86770386 MsG0180005085.01.T01:CDS
GTTTGAAGACGAAGATCGAG+AGG 0.604403 1:-86766601 None:intergenic
TGCAACCTCCCATGATTCCG+GGG 0.607576 1:-86766853 None:intergenic
ATTTAACTGGGATGTCTGCA+AGG 0.609141 1:-86768094 None:intergenic
GCTGGTGAATATGTTCGGGA+TGG 0.612067 1:-86770582 None:intergenic
CAACAGGATAACTCATTGCA+TGG 0.612835 1:+86768335 MsG0180005085.01.T01:CDS
ATCTTCAACCAATACCAGTA+GGG 0.613330 1:+86768565 MsG0180005085.01.T01:CDS
GGCTAGAAATAGGACAGAGA+AGG 0.617633 1:+86768586 MsG0180005085.01.T01:CDS
GCTGCCCTGATATATGCTGC+GGG 0.619482 1:-86770390 None:intergenic
GGACCGTGAAATTGACCGCA+AGG 0.621356 1:+86768655 MsG0180005085.01.T01:CDS
TTACTTGAAAGGCGTTCACG+AGG 0.623911 1:-86767056 None:intergenic
GAGCAATAATGGTGGTACAG+TGG 0.626007 1:+86768286 MsG0180005085.01.T01:CDS
AACAAAGATTCTAACGCCGA+TGG 0.626623 1:+86766921 MsG0180005085.01.T01:CDS
CTGAGATGAATGCAAATACA+TGG 0.629816 1:-86770527 None:intergenic
CAGAGAAGGAGCCAGTTGGT+AGG 0.631216 1:+86768600 MsG0180005085.01.T01:CDS
ATAATGGTGGTACAGTGGGT+GGG 0.637373 1:+86768291 MsG0180005085.01.T01:CDS
AGGACAGAGAAGGAGCCAGT+TGG 0.639951 1:+86768596 MsG0180005085.01.T01:CDS
CAGTATCCTTGTCAGCACCC+GGG 0.642768 1:+86770547 MsG0180005085.01.T01:CDS
ATCTGATTCGGATAGAATGG+TGG 0.643395 1:-86766743 None:intergenic
TGCTGCCCTGATATATGCTG+CGG 0.645434 1:-86770391 None:intergenic
GATCCGCAGAACACCAACCA+CGG 0.648026 1:+86770362 MsG0180005085.01.T01:CDS
AAGGTTGGCTGCACACCGGG+TGG 0.649163 1:+86767956 MsG0180005085.01.T01:CDS
GAGGACGAATTCGGAAGATG+CGG 0.649886 1:-86766954 None:intergenic
TACTTGAAAGGCGTTCACGA+GGG 0.650256 1:-86767055 None:intergenic
ATTATGACAGAAGCTATGAT+CGG 0.654273 1:+86768684 MsG0180005085.01.T01:CDS
TCTTCAGCTAATACCAGTAG+GGG 0.655030 1:+86768533 MsG0180005085.01.T01:CDS
TCTTCAACTAATACCAGTAG+GGG 0.656570 1:+86768500 MsG0180005085.01.T01:CDS
TGTCATAATCAGGATCCTTG+CGG 0.659931 1:-86768670 None:intergenic
TCTTCAACTAATACGAGTAG+GGG 0.669816 1:+86768467 MsG0180005085.01.T01:CDS
TCTGATGTTAGTTCCAGTAG+GGG 0.672223 1:+86768401 MsG0180005085.01.T01:CDS
AGGAGCCCCGGAATCATGGG+AGG 0.676223 1:+86766848 MsG0180005085.01.T01:CDS
GGAAGCCAGAATGTGAGACA+AGG 0.676402 1:+86768312 MsG0180005085.01.T01:CDS
CTGATGTTAGTTCCAGTAGG+GGG 0.676749 1:+86768402 MsG0180005085.01.T01:CDS
CTTCAACTAATACCAGTAGG+GGG 0.684709 1:+86768501 MsG0180005085.01.T01:CDS
GTACAGGCAAAGTAATAGGG+TGG 0.688595 1:+86768622 MsG0180005085.01.T01:CDS
CTTCAACATATACCAATAGG+GGG 0.689916 1:+86768435 MsG0180005085.01.T01:CDS
CTTCAGCTAATACCAGTAGG+GGG 0.698856 1:+86768534 MsG0180005085.01.T01:CDS
CTTCGAGGGTTATGAAACGG+TGG 0.699753 1:-86766767 None:intergenic
TTTAACTCGAGCAATAATGG+TGG 0.711675 1:+86768278 MsG0180005085.01.T01:CDS
TGAAGGTTGCAATCAAACCG+AGG 0.732011 1:+86768141 MsG0180005085.01.T01:CDS
TTCCACGCGAGTAAACAGAG+AGG 0.816413 1:-86768360 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTGATAAATTTTTTAG+GGG + Chr1:86770027-86770046 MsG0180005085.01.T01:intron 10.0%
!! ATACTAATTTACATTTACAT+TGG - Chr1:86769688-86769707 None:intergenic 15.0%
!! CAACACTAATATAAATATTT+AGG + Chr1:86767260-86767279 MsG0180005085.01.T01:intron 15.0%
!! TATACTCATCTTAAAAATAA+TGG - Chr1:86769923-86769942 None:intergenic 15.0%
!!! TCATTTTCTCTAATTATAAT+AGG - Chr1:86767320-86767339 None:intergenic 15.0%
!!! TTTTTAAGATGAGTATAAAT+TGG + Chr1:86769926-86769945 MsG0180005085.01.T01:intron 15.0%
!! ATTATAGTAAAATACTTCTG+TGG + Chr1:86769708-86769727 MsG0180005085.01.T01:intron 20.0%
!! TAAATATTAAGGATGAGATA+TGG + Chr1:86770162-86770181 MsG0180005085.01.T01:intron 20.0%
!! TAACTATGAAGAAATAAGAT+AGG - Chr1:86769483-86769502 None:intergenic 20.0%
!! TAAGATTTCATCTAAATCAT+AGG - Chr1:86769421-86769440 None:intergenic 20.0%
!!! ATTGTTATATATGTTGTTTG+TGG + Chr1:86767610-86767629 MsG0180005085.01.T01:intron 20.0%
! AAACTATTTATTCGAGAAAG+GGG - Chr1:86768779-86768798 None:intergenic 25.0%
! ACAGGATAATAATTGTTTAC+CGG + Chr1:86768010-86768029 MsG0180005085.01.T01:CDS 25.0%
! ATAACAAGAACGTATATTAG+CGG - Chr1:86768750-86768769 None:intergenic 25.0%
! ATTAAGGAAACTTACTTGAA+AGG - Chr1:86767070-86767089 None:intergenic 25.0%
! CAAACTATTTATTCGAGAAA+GGG - Chr1:86768780-86768799 None:intergenic 25.0%
! CTTAAAAATAATGGTGCAAA+AGG - Chr1:86769914-86769933 None:intergenic 25.0%
! GCACAAATATTTAGTTACAA+AGG - Chr1:86769622-86769641 None:intergenic 25.0%
! TCAAACTATTTATTCGAGAA+AGG - Chr1:86768781-86768800 None:intergenic 25.0%
! TGAAAATATTAACCAACATG+TGG - Chr1:86768878-86768897 None:intergenic 25.0%
! TTCTTCAACATATACCAATA+GGG + Chr1:86768433-86768452 MsG0180005085.01.T01:CDS 25.0%
! TTGAATGAGTAATTGCTAAT+TGG + Chr1:86769141-86769160 MsG0180005085.01.T01:intron 25.0%
!! AAAATTTTGAATAGTCTCCA+TGG + Chr1:86770069-86770088 MsG0180005085.01.T01:intron 25.0%
!! AGCATATGTATTTGGAATAT+GGG - Chr1:86769975-86769994 None:intergenic 25.0%
!! AGTGTTCTAGATTCTAATTA+AGG + Chr1:86767191-86767210 MsG0180005085.01.T01:intron 25.0%
!! GGGAAAAAATTGTTTTCAAT+TGG - Chr1:86768969-86768988 None:intergenic 25.0%
!! TAGCATATGTATTTGGAATA+TGG - Chr1:86769976-86769995 None:intergenic 25.0%
!!! ATTGAAAACAATTTTTTCCC+CGG + Chr1:86768969-86768988 MsG0180005085.01.T01:intron 25.0%
!!! CTTTGATTTATCCAGTTTTA+CGG + Chr1:86767853-86767872 MsG0180005085.01.T01:intron 25.0%
!!! TCTTTTCTAGCATATGTATT+TGG - Chr1:86769983-86770002 None:intergenic 25.0%
!!! TTAATGGGAATTTTGGAATT+GGG - Chr1:86766682-86766701 None:intergenic 25.0%
AAACTGATCAACCTGATTAA+CGG - Chr1:86767015-86767034 None:intergenic 30.0%
AAATGCACCACTCAATAATA+TGG - Chr1:86768725-86768744 None:intergenic 30.0%
AATCTTCAACTAATACCAGT+AGG + Chr1:86768498-86768517 MsG0180005085.01.T01:CDS 30.0%
AATCTTCAACTAATACGAGT+AGG + Chr1:86768465-86768484 MsG0180005085.01.T01:CDS 30.0%
AATGCACCACTCAATAATAT+GGG - Chr1:86768724-86768743 None:intergenic 30.0%
AGAGGAAAGAGGAATATAAT+AGG + Chr1:86768240-86768259 MsG0180005085.01.T01:CDS 30.0%
ATCTTCAACTAATACCAGTA+GGG + Chr1:86768499-86768518 MsG0180005085.01.T01:CDS 30.0%
ATCTTCAACTAATACGAGTA+GGG + Chr1:86768466-86768485 MsG0180005085.01.T01:CDS 30.0%
ATCTTTAACTCGAGCAATAA+TGG + Chr1:86768275-86768294 MsG0180005085.01.T01:CDS 30.0%
ATTATGACAGAAGCTATGAT+CGG + Chr1:86768684-86768703 MsG0180005085.01.T01:CDS 30.0%
CAGTATGTTATTGACAATTC+TGG + Chr1:86769376-86769395 MsG0180005085.01.T01:intron 30.0%
CCAACTTGATTAGGATTAAA+TGG - Chr1:86770490-86770509 None:intergenic 30.0%
CCATTTAATCCTAATCAAGT+TGG + Chr1:86770487-86770506 MsG0180005085.01.T01:CDS 30.0%
CTATAAGAAATTAGACACCA+TGG - Chr1:86770089-86770108 None:intergenic 30.0%
GAGGAAAGAGGAATATAATA+GGG + Chr1:86768241-86768260 MsG0180005085.01.T01:CDS 30.0%
GATAATAATTGTTTACCGGA+TGG + Chr1:86768014-86768033 MsG0180005085.01.T01:CDS 30.0%
GATTGGTACAAGTTACAAAT+TGG - Chr1:86766651-86766670 None:intergenic 30.0%
GCAATTTCTCTGAACAATTA+AGG - Chr1:86767086-86767105 None:intergenic 30.0%
GTAAGAAAAAAGTTGAAGAG+AGG + Chr1:86769578-86769597 MsG0180005085.01.T01:intron 30.0%
GTTCTTCAACATATACCAAT+AGG + Chr1:86768432-86768451 MsG0180005085.01.T01:CDS 30.0%
TATATGCAAAGATTTGATCC+TGG + Chr1:86770235-86770254 MsG0180005085.01.T01:CDS 30.0%
TATTAAGGATGAGATATGGT+TGG + Chr1:86770166-86770185 MsG0180005085.01.T01:intron 30.0%
TCGTGTAACTTATCAAAATC+TGG + Chr1:86769786-86769805 MsG0180005085.01.T01:intron 30.0%
TCTTCAACATATACCAATAG+GGG + Chr1:86768434-86768453 MsG0180005085.01.T01:CDS 30.0%
TTGTAGAAATCAGTAATCAC+TGG - Chr1:86769864-86769883 None:intergenic 30.0%
! AATAACTTGTAGATGTGCAT+GGG - Chr1:86769062-86769081 None:intergenic 30.0%
! AATTGGAATATACTCTGAAG+AGG + Chr1:86769943-86769962 MsG0180005085.01.T01:intron 30.0%
! AGAATCTAGAACACTAATAG+AGG - Chr1:86767186-86767205 None:intergenic 30.0%
! AGTACAAAGTGTTCAAATAG+AGG + Chr1:86769278-86769297 MsG0180005085.01.T01:intron 30.0%
! CTTGTCGTGATTTTGTATTT+GGG + Chr1:86767487-86767506 MsG0180005085.01.T01:intron 30.0%
! GTTATATATGTTGTTTGTGG+TGG + Chr1:86767613-86767632 MsG0180005085.01.T01:intron 30.0%
! TAATAACTTGTAGATGTGCA+TGG - Chr1:86769063-86769082 None:intergenic 30.0%
! TCTTGTCGTGATTTTGTATT+TGG + Chr1:86767486-86767505 MsG0180005085.01.T01:intron 30.0%
! TGTTTTCTGCATTCTCTTTT+TGG - Chr1:86767659-86767678 None:intergenic 30.0%
!! GATTTGTAAGTACTGATTTG+TGG + Chr1:86767525-86767544 MsG0180005085.01.T01:intron 30.0%
!! TTTAGGGTTAATGGGAATTT+TGG - Chr1:86766689-86766708 None:intergenic 30.0%
!!! GTTAATGGGAATTTTGGAAT+TGG - Chr1:86766683-86766702 None:intergenic 30.0%
!!! TAATGGGAATTTTGGAATTG+GGG - Chr1:86766681-86766700 None:intergenic 30.0%
!!! TTTTTTTTTTTGTTGCGCTC+TGG + Chr1:86767550-86767569 MsG0180005085.01.T01:intron 30.0%
AAAAGGCTGGTGAATATGTT+CGG - Chr1:86770590-86770609 None:intergenic 35.0%
AACCAACATGTGGTCTAAAT+AGG - Chr1:86768868-86768887 None:intergenic 35.0%
AACTTGACTTCTCCATAGAT+TGG + Chr1:86769755-86769774 MsG0180005085.01.T01:intron 35.0%
AATCTTCAACCAATACCAGT+AGG + Chr1:86768564-86768583 MsG0180005085.01.T01:CDS 35.0%
AATCTTCAGCTAATACCAGT+AGG + Chr1:86768531-86768550 MsG0180005085.01.T01:CDS 35.0%
ACATGTGTATGTGTTTGACA+CGG - Chr1:86767368-86767387 None:intergenic 35.0%
AGAAAACAATGCTGTGATGA+AGG + Chr1:86768124-86768143 MsG0180005085.01.T01:CDS 35.0%
AGAGAGAGAAAAACAGAATG+AGG + Chr1:86769553-86769572 MsG0180005085.01.T01:intron 35.0%
AGCTTCCAACATCCTATTTA+AGG + Chr1:86767937-86767956 MsG0180005085.01.T01:CDS 35.0%
AGGATTAAATGGTGACATCA+TGG - Chr1:86770479-86770498 None:intergenic 35.0%
AGTTTGCGTGAAGAATTTCA+TGG - Chr1:86766722-86766741 None:intergenic 35.0%
ATATGTTCGGGATGGATAAA+AGG - Chr1:86770577-86770596 None:intergenic 35.0%
ATCTGATGTTAGTTCCAGTA+GGG + Chr1:86768400-86768419 MsG0180005085.01.T01:CDS 35.0%
ATCTTCAACCAATACCAGTA+GGG + Chr1:86768565-86768584 MsG0180005085.01.T01:CDS 35.0%
ATCTTCAGCTAATACCAGTA+GGG + Chr1:86768532-86768551 MsG0180005085.01.T01:CDS 35.0%
ATTCTTCGAGGGTTATGAAA+CGG - Chr1:86766773-86766792 None:intergenic 35.0%
ATTGAAGAAGAGGACGAATT+CGG - Chr1:86766966-86766985 None:intergenic 35.0%
CAAAGATTTGATCCTGGATT+TGG + Chr1:86770241-86770260 MsG0180005085.01.T01:CDS 35.0%
CCACTCAATAATATGGGAAA+AGG - Chr1:86768718-86768737 None:intergenic 35.0%
CTGAGATGAATGCAAATACA+TGG - Chr1:86770530-86770549 None:intergenic 35.0%
CTTCAACATATACCAATAGG+GGG + Chr1:86768435-86768454 MsG0180005085.01.T01:CDS 35.0%
CTTTGTTGGATGAAATCAGA+AGG - Chr1:86766908-86766927 None:intergenic 35.0%
GAAGAATTTCATGGAAGGTT+TGG - Chr1:86766713-86766732 None:intergenic 35.0%
GAGAGAGAAAAACAGAATGA+GGG + Chr1:86769554-86769573 MsG0180005085.01.T01:intron 35.0%
GAGTGTATACCAACTTGATT+AGG - Chr1:86770499-86770518 None:intergenic 35.0%
GCAATGCAAATTCAAACTCA+GGG + Chr1:86768189-86768208 MsG0180005085.01.T01:CDS 35.0%
GCATTATTCGTTGCAATCAA+TGG + Chr1:86767983-86768002 MsG0180005085.01.T01:CDS 35.0%
GGATAACAGTTAACACTCAT+TGG - Chr1:86769667-86769686 None:intergenic 35.0%
TACAAATTGGAAGCGAGATA+GGG - Chr1:86766638-86766657 None:intergenic 35.0%
TAGGTACAGGCAAAGTAATA+GGG + Chr1:86768619-86768638 MsG0180005085.01.T01:CDS 35.0%
TATCTGATGTTAGTTCCAGT+AGG + Chr1:86768399-86768418 MsG0180005085.01.T01:CDS 35.0%
TCATAGCTTCTGTCATAATC+AGG - Chr1:86768683-86768702 None:intergenic 35.0%
TCTTCAACTAATACCAGTAG+GGG + Chr1:86768500-86768519 MsG0180005085.01.T01:CDS 35.0%
TCTTCAACTAATACGAGTAG+GGG + Chr1:86768467-86768486 MsG0180005085.01.T01:CDS 35.0%
TTACAAATTGGAAGCGAGAT+AGG - Chr1:86766639-86766658 None:intergenic 35.0%
TTCCTATTTAGACCACATGT+TGG + Chr1:86768863-86768882 MsG0180005085.01.T01:intron 35.0%
TTTAACTCGAGCAATAATGG+TGG + Chr1:86768278-86768297 MsG0180005085.01.T01:CDS 35.0%
TTTCTGACGGCAATTTAACT+GGG - Chr1:86768109-86768128 None:intergenic 35.0%
! ATCACAGCATTGTTTTCTGA+CGG - Chr1:86768122-86768141 None:intergenic 35.0%
! CCTTTTCCCATATTATTGAG+TGG + Chr1:86768715-86768734 MsG0180005085.01.T01:intron 35.0%
! GAATATACTCTGAAGAGGAA+GGG + Chr1:86769948-86769967 MsG0180005085.01.T01:intron 35.0%
! GGTTTAGCTTATGACGAATT+TGG + Chr1:86769011-86769030 MsG0180005085.01.T01:intron 35.0%
! GTGATACATGCTACTTCTTA+TGG + Chr1:86767724-86767743 MsG0180005085.01.T01:intron 35.0%
! TCCAACATCCTATTTAAGGT+TGG + Chr1:86767941-86767960 MsG0180005085.01.T01:CDS 35.0%
! TGCATTCTCTTTTTGGATGT+GGG - Chr1:86767652-86767671 None:intergenic 35.0%
! TTTTCCTGCTAGACTAATGA+AGG + Chr1:86767824-86767843 MsG0180005085.01.T01:intron 35.0%
! TTTTCTGACGGCAATTTAAC+TGG - Chr1:86768110-86768129 None:intergenic 35.0%
!! GAAAAACAGCTCTAAAAGTG+TGG + Chr1:86768214-86768233 MsG0180005085.01.T01:CDS 35.0%
!! GTTGCAATCAATGGTTTTAC+AGG + Chr1:86767992-86768011 MsG0180005085.01.T01:CDS 35.0%
!! TCGGTGTTGTAATTCACAAT+CGG - Chr1:86770307-86770326 None:intergenic 35.0%
!!! AATGGGAATTTTGGAATTGG+GGG - Chr1:86766680-86766699 None:intergenic 35.0%
!!! AGGTTTGGTTTTAGGGTTAA+TGG - Chr1:86766698-86766717 None:intergenic 35.0%
!!! GGTTTGGTTTTAGGGTTAAT+GGG - Chr1:86766697-86766716 None:intergenic 35.0%
!!! TCATGGAAGGTTTGGTTTTA+GGG - Chr1:86766705-86766724 None:intergenic 35.0%
!!! TTCATGGAAGGTTTGGTTTT+AGG - Chr1:86766706-86766725 None:intergenic 35.0%
AAAGGCTGGTGAATATGTTC+GGG - Chr1:86770589-86770608 None:intergenic 40.0%
AACAAAGATTCTAACGCCGA+TGG + Chr1:86766921-86766940 MsG0180005085.01.T01:CDS 40.0%
AACCTGATTAACGGCATCAT+CGG - Chr1:86767006-86767025 None:intergenic 40.0%
AAGACGAAGAAGATTCTTCG+AGG - Chr1:86766785-86766804 None:intergenic 40.0%
AAGTTGAAGAGAGGAACACA+AGG + Chr1:86769587-86769606 MsG0180005085.01.T01:intron 40.0%
AATGGTGACATCATGGTTTC+TGG - Chr1:86770472-86770491 None:intergenic 40.0%
AATTCAAGCTGCTGTTGATG+AGG - Chr1:86767912-86767931 None:intergenic 40.0%
AATTGTTTACCGGATGGTTC+TGG + Chr1:86768020-86768039 MsG0180005085.01.T01:CDS 40.0%
AGACGAAGAAGATTCTTCGA+GGG - Chr1:86766784-86766803 None:intergenic 40.0%
AGCAATAATGGTGGTACAGT+GGG + Chr1:86768287-86768306 MsG0180005085.01.T01:CDS 40.0%
ATACCAGTAGGGCTAGAAAT+AGG + Chr1:86768576-86768595 MsG0180005085.01.T01:CDS 40.0%
ATATCAGGGCAGCATATATC+AGG + Chr1:86770400-86770419 MsG0180005085.01.T01:CDS 40.0%
ATCGGCGTTAGAATCTTTGT+TGG - Chr1:86766922-86766941 None:intergenic 40.0%
ATTCGTCATAAGCTAAACCC+AGG - Chr1:86769010-86769029 None:intergenic 40.0%
ATTGCTCGAGTTAAAGATCC+TGG - Chr1:86768273-86768292 None:intergenic 40.0%
ATTGTTTACCGGATGGTTCT+GGG + Chr1:86768021-86768040 MsG0180005085.01.T01:CDS 40.0%
ATTTAACTGGGATGTCTGCA+AGG - Chr1:86768097-86768116 None:intergenic 40.0%
CAACAGGATAACTCATTGCA+TGG + Chr1:86768335-86768354 MsG0180005085.01.T01:CDS 40.0%
CAAGATGCATCTCGATTGAA+TGG - Chr1:86767471-86767490 None:intergenic 40.0%
CACATACACATGTCTAACAC+CGG + Chr1:86767375-86767394 MsG0180005085.01.T01:intron 40.0%
CACTAGAATGCTGTAGCATA+GGG + Chr1:86769301-86769320 MsG0180005085.01.T01:intron 40.0%
CAGTATGTGATTGACAACAC+TGG + Chr1:86769349-86769368 MsG0180005085.01.T01:intron 40.0%
CTTCAACTAATACCAGTAGG+GGG + Chr1:86768501-86768520 MsG0180005085.01.T01:CDS 40.0%
GATCCTGGATTTGGATTCAA+TGG + Chr1:86770250-86770269 MsG0180005085.01.T01:CDS 40.0%
GCAGCATATATCAGGAACTT+GGG + Chr1:86770408-86770427 MsG0180005085.01.T01:CDS 40.0%
GCCAACCTTAAATAGGATGT+TGG - Chr1:86767945-86767964 None:intergenic 40.0%
GGCAATGCAAATTCAAACTC+AGG + Chr1:86768188-86768207 MsG0180005085.01.T01:CDS 40.0%
GTAGGTACAGGCAAAGTAAT+AGG + Chr1:86768618-86768637 MsG0180005085.01.T01:CDS 40.0%
TCTGATGTTAGTTCCAGTAG+GGG + Chr1:86768401-86768420 MsG0180005085.01.T01:CDS 40.0%
TCTTCAGCTAATACCAGTAG+GGG + Chr1:86768533-86768552 MsG0180005085.01.T01:CDS 40.0%
TCTTGTTCGATCCGTAAAAC+TGG - Chr1:86767867-86767886 None:intergenic 40.0%
TGAAACGGTGGAATCTGATT+CGG - Chr1:86766758-86766777 None:intergenic 40.0%
TGCGTGAAGAATTTCATGGA+AGG - Chr1:86766718-86766737 None:intergenic 40.0%
TGTCATAATCAGGATCCTTG+CGG - Chr1:86768673-86768692 None:intergenic 40.0%
TTCACAATCGGTGCATACAT+TGG - Chr1:86770295-86770314 None:intergenic 40.0%
! ATCACCACTGATTGAAGAAG+AGG - Chr1:86766976-86766995 None:intergenic 40.0%
! CTGCATTCTCTTTTTGGATG+TGG - Chr1:86767653-86767672 None:intergenic 40.0%
! GGAATATACTCTGAAGAGGA+AGG + Chr1:86769947-86769966 MsG0180005085.01.T01:intron 40.0%
! TACACCTTCATTAGTCTAGC+AGG - Chr1:86767831-86767850 None:intergenic 40.0%
! TTCTTCTTCGTCGCTTTCTA+TGG + Chr1:86766803-86766822 MsG0180005085.01.T01:exon 40.0%
!! ATCTGATTCGGATAGAATGG+TGG - Chr1:86766746-86766765 None:intergenic 40.0%
!! ATTTCTAGCCCTACTGGTAT+TGG - Chr1:86768576-86768595 None:intergenic 40.0%
!! GGAATCTGATTCGGATAGAA+TGG - Chr1:86766749-86766768 None:intergenic 40.0%
AAAGTCTGTGTCTGCTTCTG+TGG - Chr1:86768167-86768186 None:intergenic 45.0%
AACATATACCAATAGGGGGC+TGG + Chr1:86768439-86768458 MsG0180005085.01.T01:CDS 45.0%
AACTAATACGAGTAGGGGAC+TGG + Chr1:86768472-86768491 MsG0180005085.01.T01:CDS 45.0%
AAGTGTGGAAGAGAGGAAAG+AGG + Chr1:86768229-86768248 MsG0180005085.01.T01:CDS 45.0%
AATAATGGTGGTACAGTGGG+TGG + Chr1:86768290-86768309 MsG0180005085.01.T01:CDS 45.0%
AATATAATAGGGCTCGTGCC+AGG + Chr1:86768252-86768271 MsG0180005085.01.T01:CDS 45.0%
AATTTCACGGTCCCGGAATA+TGG - Chr1:86768648-86768667 None:intergenic 45.0%
ACACCTGCTGGAATTGGATA+TGG + Chr1:86770442-86770461 MsG0180005085.01.T01:CDS 45.0%
ACGAGACTTCAGCCAATCTA+TGG - Chr1:86769770-86769789 None:intergenic 45.0%
AGAATGTGAGACAAGGCAAC+AGG + Chr1:86768319-86768338 MsG0180005085.01.T01:CDS 45.0%
AGGAATGAGAAGTGGTAACC+GGG - Chr1:86768990-86769009 None:intergenic 45.0%
ATAATGGTGGTACAGTGGGT+GGG + Chr1:86768291-86768310 MsG0180005085.01.T01:CDS 45.0%
ATGTCTGCAAGGCGAATAAC+AGG - Chr1:86768086-86768105 None:intergenic 45.0%
ATTCTTGACCCAGAACCATC+CGG - Chr1:86768032-86768051 None:intergenic 45.0%
CAATCAACACCTGCTGGAAT+TGG + Chr1:86770436-86770455 MsG0180005085.01.T01:CDS 45.0%
CAGAAGGTTCAAGCGTTTCA+TGG - Chr1:86766892-86766911 None:intergenic 45.0%
CAGGAATGAGAAGTGGTAAC+CGG - Chr1:86768991-86769010 None:intergenic 45.0%
CCTCCATTGAATCCAAATCC+AGG - Chr1:86770256-86770275 None:intergenic 45.0%
CCTGGATTTGGATTCAATGG+AGG + Chr1:86770253-86770272 MsG0180005085.01.T01:CDS 45.0%
CTAAACCCAGGAATGAGAAG+TGG - Chr1:86768998-86769017 None:intergenic 45.0%
CTCGATTGAATGGAGAATGC+TGG - Chr1:86767461-86767480 None:intergenic 45.0%
CTGATGTTAGTTCCAGTAGG+GGG + Chr1:86768402-86768421 MsG0180005085.01.T01:CDS 45.0%
CTTCAGCTAATACCAGTAGG+GGG + Chr1:86768534-86768553 MsG0180005085.01.T01:CDS 45.0%
GAGCAATAATGGTGGTACAG+TGG + Chr1:86768286-86768305 MsG0180005085.01.T01:CDS 45.0%
GATCCTTGCGGTCAATTTCA+CGG - Chr1:86768661-86768680 None:intergenic 45.0%
GCACTAGAATGCTGTAGCAT+AGG + Chr1:86769300-86769319 MsG0180005085.01.T01:intron 45.0%
GGAATTGGGGGTAAAGTGAT+TGG - Chr1:86766668-86766687 None:intergenic 45.0%
GGCAGCATATATCAGGAACT+TGG + Chr1:86770407-86770426 MsG0180005085.01.T01:CDS 45.0%
GGCTAGAAATAGGACAGAGA+AGG + Chr1:86768586-86768605 MsG0180005085.01.T01:CDS 45.0%
GGTTACCACTTCTCATTCCT+GGG + Chr1:86768990-86769009 MsG0180005085.01.T01:intron 45.0%
GTAATAGGGTGGCCATATTC+CGG + Chr1:86768633-86768652 MsG0180005085.01.T01:CDS 45.0%
GTACAGGCAAAGTAATAGGG+TGG + Chr1:86768622-86768641 MsG0180005085.01.T01:CDS 45.0%
GTGTGCAGCCAACCTTAAAT+AGG - Chr1:86767952-86767971 None:intergenic 45.0%
GTTTGAAGACGAAGATCGAG+AGG - Chr1:86766604-86766623 None:intergenic 45.0%
TAATAGGGTGGCCATATTCC+GGG + Chr1:86768634-86768653 MsG0180005085.01.T01:CDS 45.0%
TAGGTAGCACAACTCAGAGA+CGG + Chr1:86767279-86767298 MsG0180005085.01.T01:intron 45.0%
TCGTCCTCTTCTTCAATCAG+TGG + Chr1:86766969-86766988 MsG0180005085.01.T01:CDS 45.0%
TGAAGAGAGGAACACAAGGA+TGG + Chr1:86769591-86769610 MsG0180005085.01.T01:intron 45.0%
TGAAGGTTGCAATCAAACCG+AGG + Chr1:86768141-86768160 MsG0180005085.01.T01:CDS 45.0%
TGTCCATATCCAATTCCAGC+AGG - Chr1:86770448-86770467 None:intergenic 45.0%
TGTTGCCTTGTCTCACATTC+TGG - Chr1:86768320-86768339 None:intergenic 45.0%
! ATTTAAGGTTGGCTGCACAC+CGG + Chr1:86767952-86767971 MsG0180005085.01.T01:CDS 45.0%
! CAGAAGCAGACACAGACTTT+TGG + Chr1:86768167-86768186 MsG0180005085.01.T01:CDS 45.0%
! GTGCATACATTGGCTGCATT+GGG - Chr1:86770285-86770304 None:intergenic 45.0%
! TATTCACCAGCCTTTTGCAC+AGG + Chr1:86770594-86770613 MsG0180005085.01.T01:CDS 45.0%
! TCTTCGTCGCTTTCTATGGA+GGG + Chr1:86766807-86766826 MsG0180005085.01.T01:exon 45.0%
! TTCTTCGTCGCTTTCTATGG+AGG + Chr1:86766806-86766825 MsG0180005085.01.T01:exon 45.0%
! TTTCTGCTAACTTGCACGAC+AGG + Chr1:86770212-86770231 MsG0180005085.01.T01:intron 45.0%
!! ATTCCAGCAGGTGTTGATTG+TGG - Chr1:86770436-86770455 None:intergenic 45.0%
!! GAGTTGGTTCTACTGTTGTG+TGG + Chr1:86767416-86767435 MsG0180005085.01.T01:intron 45.0%
!! GATGGATAAAAGGCATTCCC+GGG - Chr1:86770567-86770586 None:intergenic 45.0%
!! GCTCTAAAAGTGTGGAAGAG+AGG + Chr1:86768222-86768241 MsG0180005085.01.T01:CDS 45.0%
!! GGATGGATAAAAGGCATTCC+CGG - Chr1:86770568-86770587 None:intergenic 45.0%
!! TACTTGAAAGGCGTTCACGA+GGG - Chr1:86767058-86767077 None:intergenic 45.0%
!! TGTCCTATTTCTAGCCCTAC+TGG - Chr1:86768582-86768601 None:intergenic 45.0%
!! TTACTTGAAAGGCGTTCACG+AGG - Chr1:86767059-86767078 None:intergenic 45.0%
!! TGTAAAATTAATAAATATTA+AGG + Chr1:86770151-86770170 MsG0180005085.01.T01:intron 5.0%
!!! AATATATTGATAAATTTTTT+AGG + Chr1:86770025-86770044 MsG0180005085.01.T01:intron 5.0%
!!! ATATATTGATAAATTTTTTA+GGG + Chr1:86770026-86770045 MsG0180005085.01.T01:intron 5.0%
AACACCGAGTTTCCACAGCT+TGG + Chr1:86770319-86770338 MsG0180005085.01.T01:CDS 50.0%
AACTAATACCAGTAGGGGGC+TGG + Chr1:86768505-86768524 MsG0180005085.01.T01:CDS 50.0%
ACACCTTCGATCAGAGGAGT+TGG + Chr1:86767400-86767419 MsG0180005085.01.T01:intron 50.0%
ACGAATAATGCTGAGCCACC+CGG - Chr1:86767974-86767993 None:intergenic 50.0%
AGATTCAACCAGCCCCCTAT+TGG - Chr1:86768450-86768469 None:intergenic 50.0%
CGGTTACCACTTCTCATTCC+TGG + Chr1:86768989-86769008 MsG0180005085.01.T01:intron 50.0%
CTCCGATGATGCCGTTAATC+AGG + Chr1:86767001-86767020 MsG0180005085.01.T01:CDS 50.0%
CTCTCCCGCAGCATATATCA+GGG + Chr1:86770386-86770405 MsG0180005085.01.T01:CDS 50.0%
CTTCGAGGGTTATGAAACGG+TGG - Chr1:86766770-86766789 None:intergenic 50.0%
CTTTGCCTGTACCTACCAAC+TGG - Chr1:86768614-86768633 None:intergenic 50.0%
GAACCAACTCCTCTGATCGA+AGG - Chr1:86767406-86767425 None:intergenic 50.0%
GAGGACGAATTCGGAAGATG+CGG - Chr1:86766957-86766976 None:intergenic 50.0%
GCTGGTGAATATGTTCGGGA+TGG - Chr1:86770585-86770604 None:intergenic 50.0%
GGAAGCCAGAATGTGAGACA+AGG + Chr1:86768312-86768331 MsG0180005085.01.T01:CDS 50.0%
GGAATGAGAAGTGGTAACCG+GGG - Chr1:86768989-86769008 None:intergenic 50.0%
GGATCCAAGCTGTGGAAACT+CGG - Chr1:86770326-86770345 None:intergenic 50.0%
GGTTCTACTGTTGTGTGGTC+TGG + Chr1:86767421-86767440 MsG0180005085.01.T01:intron 50.0%
GTTCCACAATCAACACCTGC+TGG + Chr1:86770430-86770449 MsG0180005085.01.T01:CDS 50.0%
TCAGTATCCTTGTCAGCACC+CGG + Chr1:86770546-86770565 MsG0180005085.01.T01:CDS 50.0%
TCTGCAACCTCCCATGATTC+CGG - Chr1:86766858-86766877 None:intergenic 50.0%
TGCTGCCCTGATATATGCTG+CGG - Chr1:86770394-86770413 None:intergenic 50.0%
TGTTAGTTCCAGTAGGGGGA+TGG + Chr1:86768406-86768425 MsG0180005085.01.T01:CDS 50.0%
TTCCACGCGAGTAAACAGAG+AGG - Chr1:86768363-86768382 None:intergenic 50.0%
TTCCTCTCTGTTTACTCGCG+TGG + Chr1:86768358-86768377 MsG0180005085.01.T01:CDS 50.0%
TTCTATGGAGGGCTCTTCAG+AGG + Chr1:86766818-86766837 MsG0180005085.01.T01:exon 50.0%
! GGTGCATACATTGGCTGCAT+TGG - Chr1:86770286-86770305 None:intergenic 50.0%
! TGCGCTCTGGTTTAGATGCA+TGG + Chr1:86767563-86767582 MsG0180005085.01.T01:intron 50.0%
! TTTAAGGTTGGCTGCACACC+GGG + Chr1:86767953-86767972 MsG0180005085.01.T01:CDS 50.0%
AGAACCAACCATCCCCCTAC+TGG - Chr1:86768417-86768436 None:intergenic 55.0%
AGATTCAACCAGCCCCCTAC+TGG - Chr1:86768516-86768535 None:intergenic 55.0%
AGCTAATACCAGTAGGGGGC+TGG + Chr1:86768538-86768557 MsG0180005085.01.T01:CDS 55.0%
AGGACAGAGAAGGAGCCAGT+TGG + Chr1:86768596-86768615 MsG0180005085.01.T01:CDS 55.0%
AGTTCCAGTAGGGGGATGGT+TGG + Chr1:86768410-86768429 MsG0180005085.01.T01:CDS 55.0%
CAGAGAAGGAGCCAGTTGGT+AGG + Chr1:86768600-86768619 MsG0180005085.01.T01:CDS 55.0%
CAGTATCCTTGTCAGCACCC+GGG + Chr1:86770547-86770566 MsG0180005085.01.T01:CDS 55.0%
CCTCTCCCGCAGCATATATC+AGG + Chr1:86770385-86770404 MsG0180005085.01.T01:CDS 55.0%
CCTGATATATGCTGCGGGAG+AGG - Chr1:86770388-86770407 None:intergenic 55.0%
CTGCAACCTCCCATGATTCC+GGG - Chr1:86766857-86766876 None:intergenic 55.0%
GAGGGCTCTTCAGAGGATCT+TGG + Chr1:86766825-86766844 MsG0180005085.01.T01:CDS 55.0%
GATCCGCAGAACACCAACCA+CGG + Chr1:86770362-86770381 MsG0180005085.01.T01:CDS 55.0%
GCTGCCCTGATATATGCTGC+GGG - Chr1:86770393-86770412 None:intergenic 55.0%
GGACCGTGAAATTGACCGCA+AGG + Chr1:86768655-86768674 MsG0180005085.01.T01:CDS 55.0%
GGCTCTTCAGAGGATCTTGG+AGG + Chr1:86766828-86766847 MsG0180005085.01.T01:CDS 55.0%
TGCAACCTCCCATGATTCCG+GGG - Chr1:86766856-86766875 None:intergenic 55.0%
TGCGGTCAATTTCACGGTCC+CGG - Chr1:86768655-86768674 None:intergenic 55.0%
TGTGTCTGCTTCTGTGGCCT+CGG - Chr1:86768161-86768180 None:intergenic 55.0%
! CCTCTGATCGAAGGTGTGTC+CGG - Chr1:86767397-86767416 None:intergenic 55.0%
! TTGGTGTTCTGCGGATCGCT+GGG - Chr1:86770359-86770378 None:intergenic 55.0%
!! AGGAGCCAGTTGGTAGGTAC+AGG + Chr1:86768606-86768625 MsG0180005085.01.T01:CDS 55.0%
AGAGGATCTTGGAGGAGCCC+CGG + Chr1:86766836-86766855 MsG0180005085.01.T01:CDS 60.0%
ATGCGGCGAAGCAGCACCAT+CGG - Chr1:86766940-86766959 None:intergenic 60.0%
CCACAGCTTGGATCCCCTCA+TGG + Chr1:86770331-86770350 MsG0180005085.01.T01:CDS 60.0%
CCATGAGGGGATCCAAGCTG+TGG - Chr1:86770334-86770353 None:intergenic 60.0%
CCGGACACACCTTCGATCAG+AGG + Chr1:86767394-86767413 MsG0180005085.01.T01:intron 60.0%
TGGAGGAGCCCCGGAATCAT+GGG + Chr1:86766845-86766864 MsG0180005085.01.T01:CDS 60.0%
TGGTGTTCTGCGGATCGCTG+GGG - Chr1:86770358-86770377 None:intergenic 60.0%
TTGGAGGAGCCCCGGAATCA+TGG + Chr1:86766844-86766863 MsG0180005085.01.T01:CDS 60.0%
! AGGCCGTGGTTGGTGTTCTG+CGG - Chr1:86770368-86770387 None:intergenic 60.0%
! GTTGGTGTTCTGCGGATCGC+TGG - Chr1:86770360-86770379 None:intergenic 60.0%
AGGAGCCCCGGAATCATGGG+AGG + Chr1:86766848-86766867 MsG0180005085.01.T01:CDS 65.0%
ATATGCTGCGGGAGAGGCCG+TGG - Chr1:86770382-86770401 None:intergenic 65.0%
GGTGTTCTGCGGATCGCTGG+GGG - Chr1:86770357-86770376 None:intergenic 65.0%
! AAGGTTGGCTGCACACCGGG+TGG + Chr1:86767956-86767975 MsG0180005085.01.T01:CDS 65.0%
!! GGCATTCCCGGGTGCTGACA+AGG - Chr1:86770556-86770575 None:intergenic 65.0%
CGGATCGCTGGGGGCCATGA+GGG - Chr1:86770348-86770367 None:intergenic 70.0%
GGATCGCTGGGGGCCATGAG+GGG - Chr1:86770347-86770366 None:intergenic 70.0%
GCGGATCGCTGGGGGCCATG+AGG - Chr1:86770349-86770368 None:intergenic 75.0%
GCTGCGGGAGAGGCCGTGGT+TGG - Chr1:86770378-86770397 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 86766585 86770621 86766585 ID=MsG0180005085.01;Name=MsG0180005085.01
Chr1 mRNA 86766585 86770621 86766585 ID=MsG0180005085.01.T01;Parent=MsG0180005085.01;Name=MsG0180005085.01.T01;_AED=0.48;_eAED=0.48;_QI=237|1|0.66|1|1|1|3|0|492
Chr1 exon 86766585 86767074 86766585 ID=MsG0180005085.01.T01:exon:14183;Parent=MsG0180005085.01.T01
Chr1 exon 86767868 86768705 86767868 ID=MsG0180005085.01.T01:exon:14184;Parent=MsG0180005085.01.T01
Chr1 exon 86770234 86770621 86770234 ID=MsG0180005085.01.T01:exon:14185;Parent=MsG0180005085.01.T01
Chr1 five_prime_UTR 86766585 86766821 86766585 ID=MsG0180005085.01.T01:five_prime_utr;Parent=MsG0180005085.01.T01
Chr1 CDS 86766822 86767074 86766822 ID=MsG0180005085.01.T01:cds;Parent=MsG0180005085.01.T01
Chr1 CDS 86767868 86768705 86767868 ID=MsG0180005085.01.T01:cds;Parent=MsG0180005085.01.T01
Chr1 CDS 86770234 86770621 86770234 ID=MsG0180005085.01.T01:cds;Parent=MsG0180005085.01.T01
Gene Sequence

>MsG0180005085.01.T01

ATGGAGGGCTCTTCAGAGGATCTTGGAGGAGCCCCGGAATCATGGGAGGTTGCAGATTTAGACGATTCCATGAAACGCTTGAACCTTCTGATTTCATCCAACAAAGATTCTAACGCCGATGGTGCTGCTTCGCCGCATCTTCCGAATTCGTCCTCTTCTTCAATCAGTGGTGATAATGTCTCCGATGATGCCGTTAATCAGGTTGATCAGTTTCTTCGTGAAGCGATTCAAAACCCTCGTGAACGCCTTTCAATTTTACGGATCGAACAAGATGTTCTGAATTTTATTAAAGATCCTCATCAACAGCAGCTTGAATTTAATCAGCTTCCAACATCCTATTTAAGGTTGGCTGCACACCGGGTGGCTCAGCATTATTCGTTGCAATCAATGGTTTTACAGGATAATAATTGTTTACCGGATGGTTCTGGGTCAAGAATTATTGTTAGCAAAACTGCTGAATGTAAGCGTCCTGTTATTCGCCTTGCAGACATCCCAGTTAAATTGCCGTCAGAAAACAATGCTGTGATGAAGGTTGCAATCAAACCGAGGCCACAGAAGCAGACACAGACTTTTGGCAATGCAAATTCAAACTCAGGGAAGAAAAACAGCTCTAAAAGTGTGGAAGAGAGGAAAGAGGAATATAATAGGGCTCGTGCCAGGATCTTTAACTCGAGCAATAATGGTGGTACAGTGGGTGGGAAGCCAGAATGTGAGACAAGGCAACAGGATAACTCATTGCATGGTTCCTCTCTGTTTACTCGCGTGGAAGATAAATATGCTTCTGTATCTGATGTTAGTTCCAGTAGGGGGATGGTTGGTTCTTCAACATATACCAATAGGGGGCTGGTTGAATCTTCAACTAATACGAGTAGGGGACTGGTTGAATCTTCAACTAATACCAGTAGGGGGCTGGTTGAATCTTCAGCTAATACCAGTAGGGGGCTGGTTGAATCTTCAACCAATACCAGTAGGGCTAGAAATAGGACAGAGAAGGAGCCAGTTGGTAGGTACAGGCAAAGTAATAGGGTGGCCATATTCCGGGACCGTGAAATTGACCGCAAGGATCCTGATTATGACAGAAGCTATGATCGGTATATGCAAAGATTTGATCCTGGATTTGGATTCAATGGAGGATCATACCCAATGCAGCCAATGTATGCACCGATTGTGAATTACAACACCGAGTTTCCACAGCTTGGATCCCCTCATGGCCCCCAGCGATCCGCAGAACACCAACCACGGCCTCTCCCGCAGCATATATCAGGGCAGCATATATCAGGAACTTGGGTTCCACAATCAACACCTGCTGGAATTGGATATGGACATCCAGAAACCATGATGTCACCATTTAATCCTAATCAAGTTGGTATACACTCTTCATCAACCATGTATTTGCATTCATCTCAGTATCCTTGTCAGCACCCGGGAATGCCTTTTATCCATCCCGAACATATTCACCAGCCTTTTGCACAGGTATAG
Protein sequence

>MsG0180005085.01.T01

MEGSSEDLGGAPESWEVADLDDSMKRLNLLISSNKDSNADGAASPHLPNSSSSSISGDNVSDDAVNQVDQFLREAIQNPRERLSILRIEQDVLNFIKDPHQQQLEFNQLPTSYLRLAAHRVAQHYSLQSMVLQDNNCLPDGSGSRIIVSKTAECKRPVIRLADIPVKLPSENNAVMKVAIKPRPQKQTQTFGNANSNSGKKNSSKSVEERKEEYNRARARIFNSSNNGGTVGGKPECETRQQDNSLHGSSLFTRVEDKYASVSDVSSSRGMVGSSTYTNRGLVESSTNTSRGLVESSTNTSRGLVESSANTSRGLVESSTNTSRARNRTEKEPVGRYRQSNRVAIFRDREIDRKDPDYDRSYDRYMQRFDPGFGFNGGSYPMQPMYAPIVNYNTEFPQLGSPHGPQRSAEHQPRPLPQHISGQHISGTWVPQSTPAGIGYGHPETMMSPFNPNQVGIHSSSTMYLHSSQYPCQHPGMPFIHPEHIHQPFAQV*