Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045704.01.T01 | XP_024628461.1 | 96 | 150 | 6 | 0 | 1 | 150 | 1 | 150 | 3.19E-97 | 296 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045704.01.T01 | Q8GVE5 | 63.758 | 149 | 45 | 3 | 1 | 147 | 1 | 142 | 9.93E-61 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045704.01.T01 | A0A072TSP9 | 96.000 | 150 | 6 | 0 | 1 | 150 | 1 | 150 | 1.52e-97 | 296 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048817.01 | MsG0880045704.01 | -0.816429 | 5.555276e-52 | 3.935252e-49 |
| MsG0180000139.01 | MsG0880045704.01 | -0.804848 | 1.773536e-49 | 9.242334e-47 |
| MsG0180002482.01 | MsG0880045704.01 | -0.818269 | 2.140951e-52 | 1.595044e-49 |
| MsG0880044225.01 | MsG0880045704.01 | 0.822024 | 2.955769e-53 | 2.444744e-50 |
| MsG0880045010.01 | MsG0880045704.01 | 0.812716 | 3.685306e-51 | 2.360408e-48 |
| MsG0880045548.01 | MsG0880045704.01 | 0.825961 | 3.523532e-54 | 3.259913e-51 |
| MsG0880045605.01 | MsG0880045704.01 | 0.836762 | 7.738900e-57 | 9.848314e-54 |
| MsG0880045704.01 | MsG0880046126.01 | -0.804351 | 2.252740e-49 | 1.158912e-46 |
| MsG0880045704.01 | MsG0880046825.01 | 0.819754 | 9.836511e-53 | 7.636588e-50 |
| MsG0880045704.01 | MsG0880047179.01 | 0.829759 | 4.300167e-55 | 4.443172e-52 |
| MsG0880045704.01 | MsG0880047427.01 | -0.849716 | 2.705289e-60 | 5.174861e-57 |
| MsG0180003302.01 | MsG0880045704.01 | -0.818957 | 1.494782e-52 | 1.135156e-49 |
| MsG0180003767.01 | MsG0880045704.01 | 0.809154 | 2.176490e-50 | 1.268265e-47 |
| MsG0180004447.01 | MsG0880045704.01 | 0.845036 | 5.214992e-59 | 8.580053e-56 |
| MsG0180004509.01 | MsG0880045704.01 | -0.817849 | 2.664549e-52 | 1.962458e-49 |
| MsG0180005085.01 | MsG0880045704.01 | 0.813123 | 3.002029e-51 | 1.943532e-48 |
| MsG0180005851.01 | MsG0880045704.01 | -0.832347 | 9.954269e-56 | 1.109537e-52 |
| MsG0180006034.01 | MsG0880045704.01 | 0.809455 | 1.875872e-50 | 1.101875e-47 |
| MsG0180006261.01 | MsG0880045704.01 | -0.805652 | 1.203820e-49 | 6.404039e-47 |
| MsG0180006267.01 | MsG0880045704.01 | 0.802896 | 4.512558e-49 | 2.236468e-46 |
| MsG0780040476.01 | MsG0880045704.01 | 0.838565 | 2.666145e-57 | 3.584865e-54 |
| MsG0780041470.01 | MsG0880045704.01 | 0.881411 | 2.455117e-70 | 1.436748e-66 |
| MsG0280010884.01 | MsG0880045704.01 | 0.860043 | 2.719383e-63 | 7.334119e-60 |
| MsG0280011387.01 | MsG0880045704.01 | -0.802974 | 4.347974e-49 | 2.159029e-46 |
| MsG0380012661.01 | MsG0880045704.01 | 0.823366 | 1.439667e-53 | 1.236951e-50 |
| MsG0380013794.01 | MsG0880045704.01 | 0.833116 | 6.416276e-56 | 7.319021e-53 |
| MsG0480019162.01 | MsG0880045704.01 | 0.813527 | 2.446403e-51 | 1.601548e-48 |
| MsG0480019163.01 | MsG0880045704.01 | 0.810478 | 1.129855e-50 | 6.817815e-48 |
| MsG0480019843.01 | MsG0880045704.01 | 0.805613 | 1.226751e-49 | 6.519371e-47 |
| MsG0480022340.01 | MsG0880045704.01 | 0.812864 | 3.421444e-51 | 2.199769e-48 |
| MsG0480022795.01 | MsG0880045704.01 | -0.825852 | 3.738525e-54 | 3.448351e-51 |
| MsG0480023973.01 | MsG0880045704.01 | 0.858207 | 9.655074e-63 | 2.444977e-59 |
| MsG0580024410.01 | MsG0880045704.01 | 0.824177 | 9.294841e-54 | 8.171963e-51 |
| MsG0580025182.01 | MsG0880045704.01 | 0.812491 | 4.128381e-51 | 2.628636e-48 |
| MsG0380015027.01 | MsG0880045704.01 | -0.807040 | 6.138169e-50 | 3.383650e-47 |
| MsG0380016547.01 | MsG0880045704.01 | 0.876357 | 1.489642e-68 | 7.199985e-65 |
| MsG0380016559.01 | MsG0880045704.01 | -0.815762 | 7.831037e-52 | 5.447517e-49 |
| MsG0380016560.01 | MsG0880045704.01 | -0.804175 | 2.451028e-49 | 1.255220e-46 |
| MsG0380017776.01 | MsG0880045704.01 | 0.866742 | 2.282586e-65 | 7.777216e-62 |
| MsG0280007058.01 | MsG0880045704.01 | 0.817461 | 3.259149e-52 | 2.375069e-49 |
| MsG0280007111.01 | MsG0880045704.01 | 0.801478 | 8.835209e-49 | 4.223685e-46 |
| MsG0280007193.01 | MsG0880045704.01 | 0.808997 | 2.352194e-50 | 1.364817e-47 |
| MsG0280009591.01 | MsG0880045704.01 | -0.806497 | 7.993347e-50 | 4.345081e-47 |
| MsG0780036184.01 | MsG0880045704.01 | 0.850788 | 1.353500e-60 | 2.681902e-57 |
| MsG0780039844.01 | MsG0880045704.01 | -0.835112 | 2.028295e-56 | 2.455946e-53 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045704.01.T01 | MTR_8g077195 | 96.000 | 150 | 6 | 0 | 1 | 150 | 1 | 150 | 3.86e-101 | 296 |
| MsG0880045704.01.T01 | MTR_8g077675 | 78.621 | 145 | 26 | 1 | 1 | 145 | 1 | 140 | 3.35e-76 | 232 |
| MsG0880045704.01.T01 | MTR_8g077620 | 76.667 | 150 | 34 | 1 | 1 | 150 | 1 | 149 | 1.17e-75 | 230 |
| MsG0880045704.01.T01 | MTR_5g020580 | 69.799 | 149 | 43 | 1 | 1 | 147 | 1 | 149 | 2.03e-72 | 223 |
| MsG0880045704.01.T01 | MTR_1g023800 | 61.644 | 146 | 53 | 2 | 1 | 145 | 1 | 144 | 4.43e-57 | 176 |
| MsG0880045704.01.T01 | MTR_1g022370 | 57.055 | 163 | 53 | 2 | 1 | 146 | 1 | 163 | 2.87e-56 | 181 |
| MsG0880045704.01.T01 | MTR_8g077640 | 70.922 | 141 | 38 | 1 | 1 | 141 | 46 | 183 | 5.99e-56 | 180 |
| MsG0880045704.01.T01 | MTR_2g007930 | 50.658 | 152 | 68 | 3 | 1 | 148 | 1 | 149 | 1.27e-44 | 151 |
| MsG0880045704.01.T01 | MTR_1g098790 | 50.327 | 153 | 66 | 3 | 1 | 148 | 1 | 148 | 5.81e-43 | 147 |
| MsG0880045704.01.T01 | MTR_2g020280 | 54.082 | 98 | 45 | 0 | 46 | 143 | 32 | 129 | 2.16e-33 | 121 |
| MsG0880045704.01.T01 | MTR_8g077650 | 61.947 | 113 | 15 | 4 | 37 | 145 | 3 | 91 | 2.88e-33 | 119 |
| MsG0880045704.01.T01 | MTR_1g088960 | 39.735 | 151 | 72 | 2 | 1 | 143 | 1 | 140 | 4.91e-33 | 120 |
| MsG0880045704.01.T01 | MTR_2g076200 | 53.535 | 99 | 46 | 0 | 46 | 144 | 35 | 133 | 2.69e-32 | 118 |
| MsG0880045704.01.T01 | MTR_2g076210 | 48.571 | 105 | 54 | 0 | 41 | 145 | 25 | 129 | 1.27e-29 | 110 |
| MsG0880045704.01.T01 | MTR_0210s0010 | 57.692 | 52 | 22 | 0 | 96 | 147 | 9 | 60 | 6.51e-16 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880045704.01.T01 | AT2G18280 | 63.758 | 149 | 45 | 3 | 1 | 147 | 1 | 142 | 1.01e-61 | 195 |
| MsG0880045704.01.T01 | AT2G18280 | 63.758 | 149 | 45 | 3 | 1 | 147 | 1 | 142 | 1.01e-61 | 195 |
| MsG0880045704.01.T01 | AT2G47900 | 49.655 | 145 | 68 | 3 | 1 | 143 | 1 | 142 | 2.70e-45 | 152 |
| MsG0880045704.01.T01 | AT2G47900 | 49.655 | 145 | 68 | 3 | 1 | 143 | 1 | 142 | 2.70e-45 | 152 |
| MsG0880045704.01.T01 | AT2G47900 | 49.655 | 145 | 68 | 3 | 1 | 143 | 1 | 142 | 2.82e-45 | 152 |
| MsG0880045704.01.T01 | AT1G76900 | 49.677 | 155 | 68 | 2 | 1 | 148 | 1 | 152 | 7.95e-43 | 147 |
| MsG0880045704.01.T01 | AT1G76900 | 49.677 | 155 | 68 | 2 | 1 | 148 | 1 | 152 | 7.95e-43 | 147 |
| MsG0880045704.01.T01 | AT1G76900 | 49.677 | 155 | 68 | 2 | 1 | 148 | 1 | 152 | 7.95e-43 | 147 |
| MsG0880045704.01.T01 | AT1G25280 | 47.771 | 157 | 70 | 3 | 1 | 148 | 1 | 154 | 1.76e-42 | 146 |
| MsG0880045704.01.T01 | AT1G47270 | 50.327 | 153 | 53 | 3 | 1 | 146 | 1 | 137 | 2.01e-42 | 145 |
| MsG0880045704.01.T01 | AT1G47270 | 50.327 | 153 | 53 | 3 | 1 | 146 | 25 | 161 | 2.81e-42 | 145 |
| MsG0880045704.01.T01 | AT1G47270 | 50.327 | 153 | 53 | 3 | 1 | 146 | 26 | 162 | 2.83e-42 | 145 |
| MsG0880045704.01.T01 | AT1G43640 | 46.405 | 153 | 74 | 3 | 1 | 148 | 1 | 150 | 6.04e-40 | 139 |
| MsG0880045704.01.T01 | AT1G61940 | 54.023 | 87 | 40 | 0 | 56 | 142 | 1 | 87 | 1.26e-30 | 111 |
| MsG0880045704.01.T01 | AT3G06380 | 55.914 | 93 | 40 | 1 | 53 | 144 | 33 | 125 | 4.81e-30 | 112 |
| MsG0880045704.01.T01 | AT1G53320 | 53.763 | 93 | 43 | 0 | 53 | 145 | 44 | 136 | 4.38e-29 | 109 |
| MsG0880045704.01.T01 | AT5G18680 | 50.515 | 97 | 47 | 1 | 49 | 144 | 35 | 131 | 2.37e-28 | 107 |
| MsG0880045704.01.T01 | AT1G43640 | 54.878 | 82 | 37 | 0 | 67 | 148 | 3 | 84 | 1.24e-27 | 105 |
| MsG0880045704.01.T01 | AT1G61940 | 47.297 | 74 | 36 | 1 | 56 | 129 | 1 | 71 | 2.71e-18 | 78.6 |
Find 58 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGAGTTATTTGAATTTA+TGG | 0.037907 | 8:-63046843 | None:intergenic |
| ATTACTTGCTTCAATGAAAT+AGG | 0.231585 | 8:-63047962 | None:intergenic |
| CTTCACCGCCACCGCGATTC+TGG | 0.271168 | 8:-63046782 | None:intergenic |
| TCTACCTCCTGAATTGCTTT+TGG | 0.284311 | 8:+63047796 | MsG0880045704.01.T01:CDS |
| TGACCGACATAGCCAATTCT+TGG | 0.292823 | 8:-63047711 | None:intergenic |
| ATTATGTCCAAAAGCAATTC+AGG | 0.329275 | 8:-63047803 | None:intergenic |
| CCCTGTTGAATAGGTTCAAC+TGG | 0.348623 | 8:-63047761 | None:intergenic |
| GATCATAAAGCTAGAAGCTT+TGG | 0.357404 | 8:+63047576 | MsG0880045704.01.T01:five_prime_UTR |
| TCCAGTTGAACCTATTCAAC+AGG | 0.363499 | 8:+63047760 | MsG0880045704.01.T01:CDS |
| ATCCGATCCAGTGCTTTATT+CGG | 0.365212 | 8:+63048096 | MsG0880045704.01.T01:CDS |
| CTTCGTGTTGTACTTAGGTT+TGG | 0.385998 | 8:+63048139 | MsG0880045704.01.T01:CDS |
| TTTATTATGTTTATTTATGT+TGG | 0.389066 | 8:-63046685 | None:intergenic |
| TTGGATTGGTGCAGTTTGTA+AGG | 0.399291 | 8:+63047600 | MsG0880045704.01.T01:five_prime_UTR |
| CGATTCTGGAGAATCGCGTT+TGG | 0.417780 | 8:-63046768 | None:intergenic |
| TAAAGCTAGAAGCTTTGGTT+TGG | 0.426639 | 8:+63047581 | MsG0880045704.01.T01:five_prime_UTR |
| GATTCTGGAGAATCGCGTTT+GGG | 0.427715 | 8:-63046767 | None:intergenic |
| CTTTAAGATGATAACTTACA+TGG | 0.428608 | 8:-63048164 | None:intergenic |
| CTAGAAGCTTTGGTTTGGAT+TGG | 0.432503 | 8:+63047586 | MsG0880045704.01.T01:five_prime_UTR |
| AACAATAACACTATAGAATA+CGG | 0.447248 | 8:-63046929 | None:intergenic |
| GTGCTTCGGTATGTAAATCA+TGG | 0.451227 | 8:+63047882 | MsG0880045704.01.T01:CDS |
| GGGGTTCCGACACCAAGAAT+TGG | 0.468962 | 8:+63047699 | MsG0880045704.01.T01:CDS |
| TCTACCTTCGTGTTGTACTT+AGG | 0.472018 | 8:+63048134 | MsG0880045704.01.T01:CDS |
| GCCCACTGTCCCTGTTGAAT+AGG | 0.474061 | 8:-63047770 | None:intergenic |
| TTGAAGAGAGTGAGACATCT+TGG | 0.483464 | 8:+63047834 | MsG0880045704.01.T01:CDS |
| AAAACAACAACAGCACGTGC+AGG | 0.486562 | 8:-63047857 | None:intergenic |
| GTCAAAGTCACATGTTGCTC+CGG | 0.499201 | 8:+63047730 | MsG0880045704.01.T01:CDS |
| AAGTATAGTCCGCGAGCTCA+AGG | 0.504569 | 8:+63047643 | MsG0880045704.01.T01:CDS |
| GATCGGATAATCACGAGGAC+CGG | 0.524270 | 8:-63048081 | None:intergenic |
| AATAGGTAGCATATCAAAGC+GGG | 0.526116 | 8:+63047679 | MsG0880045704.01.T01:CDS |
| ATTCTCCAGAATCGCGGTGG+CGG | 0.530765 | 8:+63046777 | MsG0880045704.01.T01:five_prime_UTR |
| AGAGAATACAATAAATCAAA+CGG | 0.532877 | 8:+63046585 | None:intergenic |
| GGTTCAACTGGAGTTACATC+CGG | 0.536368 | 8:-63047749 | None:intergenic |
| ATCGGATAATCACGAGGACC+GGG | 0.546623 | 8:-63048080 | None:intergenic |
| AGTATAGTCCGCGAGCTCAA+GGG | 0.546651 | 8:+63047644 | MsG0880045704.01.T01:CDS |
| CGATCCAGTGCTTTATTCGG+AGG | 0.568767 | 8:+63048099 | MsG0880045704.01.T01:CDS |
| ACCTATTCAACAGGGACAGT+GGG | 0.571704 | 8:+63047769 | MsG0880045704.01.T01:CDS |
| TGTTCCTCCGAATAAAGCAC+TGG | 0.582412 | 8:-63048103 | None:intergenic |
| GTATAGTCCGCGAGCTCAAG+GGG | 0.588978 | 8:+63047645 | MsG0880045704.01.T01:CDS |
| TTGGTGCAGTTTGTAAGGTG+TGG | 0.591095 | 8:+63047605 | MsG0880045704.01.T01:five_prime_UTR |
| CTCCGAATAAAGCACTGGAT+CGG | 0.592057 | 8:-63048098 | None:intergenic |
| ACACCAAGAATTGGCTATGT+CGG | 0.600503 | 8:+63047708 | MsG0880045704.01.T01:CDS |
| AAACTCCTCAGCAATGTGGA+AGG | 0.605709 | 8:+63047930 | MsG0880045704.01.T01:CDS |
| AAAGTAAGAAGAACGAGAAG+TGG | 0.622647 | 8:-63046818 | None:intergenic |
| ATCAAAACTCCTCAGCAATG+TGG | 0.629509 | 8:+63047926 | MsG0880045704.01.T01:CDS |
| ACATAGCCAATTCTTGGTGT+CGG | 0.630203 | 8:-63047705 | None:intergenic |
| AACCTATTCAACAGGGACAG+TGG | 0.631854 | 8:+63047768 | MsG0880045704.01.T01:CDS |
| AAGTAAGAAGAACGAGAAGT+GGG | 0.636222 | 8:-63046817 | None:intergenic |
| GTGATCCTTCCACATTGCTG+AGG | 0.665555 | 8:-63047935 | None:intergenic |
| CACTGGATCGGATAATCACG+AGG | 0.678479 | 8:-63048086 | None:intergenic |
| AATCACAAACACTGACACGA+CGG | 0.686356 | 8:+63046623 | MsG0880045704.01.T01:five_prime_UTR |
| CCAGTTGAACCTATTCAACA+GGG | 0.686684 | 8:+63047761 | MsG0880045704.01.T01:CDS |
| ATGTCCAAAAGCAATTCAGG+AGG | 0.691534 | 8:-63047800 | None:intergenic |
| AACGCGATTCTCCAGAATCG+CGG | 0.692412 | 8:+63046771 | MsG0880045704.01.T01:five_prime_UTR |
| GCGATTCTCCAGAATCGCGG+TGG | 0.707853 | 8:+63046774 | MsG0880045704.01.T01:five_prime_UTR |
| CTTCGGTATGTAAATCATGG+AGG | 0.713760 | 8:+63047885 | MsG0880045704.01.T01:CDS |
| GAATAGGTAGCATATCAAAG+CGG | 0.721866 | 8:+63047678 | MsG0880045704.01.T01:CDS |
| ATAGGTAGCATATCAAAGCG+GGG | 0.729686 | 8:+63047680 | MsG0880045704.01.T01:CDS |
| CAAACCTAAGTACAACACGA+AGG | 0.754352 | 8:-63048138 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATATTTATTCATCAA+TGG | - | Chr8:63047319-63047338 | None:intergenic | 10.0% |
| !! | TTTATTATGTTTATTTATGT+TGG | - | Chr8:63046688-63046707 | None:intergenic | 10.0% |
| !! | AATATAATCAAGGTTTATTA+TGG | - | Chr8:63047210-63047229 | None:intergenic | 15.0% |
| !! | ATAAGTAATGAATATAATCA+AGG | - | Chr8:63047220-63047239 | None:intergenic | 15.0% |
| !!! | ATTTTTATGTTAGTTTTAGA+TGG | + | Chr8:63047086-63047105 | MsG0880045704.01.T01:intron | 15.0% |
| !! | AACAATAACACTATAGAATA+CGG | - | Chr8:63046932-63046951 | None:intergenic | 20.0% |
| !! | CTAAGAAGAAAAAACAAAAT+CGG | - | Chr8:63046907-63046926 | None:intergenic | 20.0% |
| !! | TCAAAATTCAATCTTTGATT+TGG | - | Chr8:63047285-63047304 | None:intergenic | 20.0% |
| !!! | AATTTGGATTAGACTAAAAA+AGG | - | Chr8:63048000-63048019 | None:intergenic | 20.0% |
| !!! | ATTTCACGTTTTTTCTTTTT+TGG | + | Chr8:63047017-63047036 | MsG0880045704.01.T01:intron | 20.0% |
| !!! | ATTTGGATTAGACTAAAAAA+GGG | - | Chr8:63047999-63048018 | None:intergenic | 20.0% |
| !!! | TAATTGTAGTTGAATTTTGA+TGG | + | Chr8:63047245-63047264 | MsG0880045704.01.T01:intron | 20.0% |
| !!! | TTTCACGTTTTTTCTTTTTT+GGG | + | Chr8:63047018-63047037 | MsG0880045704.01.T01:intron | 20.0% |
| !!! | TTTCCATAAAAATCTGAAAT+TGG | - | Chr8:63046998-63047017 | None:intergenic | 20.0% |
| ! | AGTCTAATCCAAATTATTCT+TGG | + | Chr8:63048005-63048024 | MsG0880045704.01.T01:intron | 25.0% |
| ! | ATTACTTGCTTCAATGAAAT+AGG | - | Chr8:63047965-63047984 | None:intergenic | 25.0% |
| ! | GAGAGAGTTATTTGAATTTA+TGG | - | Chr8:63046846-63046865 | None:intergenic | 25.0% |
| ! | TAACCTGAATGAAGAAAAAA+TGG | - | Chr8:63046964-63046983 | None:intergenic | 25.0% |
| !! | AAAATCTGAAATTGGACAAA+AGG | - | Chr8:63046990-63047009 | None:intergenic | 25.0% |
| !! | TAAGAAGCATAAAAAACCTA+AGG | - | Chr8:63048032-63048051 | None:intergenic | 25.0% |
| !! | TGTCCAATTTCAGATTTTTA+TGG | + | Chr8:63046992-63047011 | MsG0880045704.01.T01:intron | 25.0% |
| !! | TTTGGATTAGACTAAAAAAG+GGG | - | Chr8:63047998-63048017 | None:intergenic | 25.0% |
| !!! | TTCACGTTTTTTCTTTTTTG+GGG | + | Chr8:63047019-63047038 | MsG0880045704.01.T01:intron | 25.0% |
| !!! | TTGCAGCATTTTAATTTTGT+AGG | + | Chr8:63047173-63047192 | MsG0880045704.01.T01:intron | 25.0% |
| ATCAAGGTTTATTATGGTCA+AGG | - | Chr8:63047204-63047223 | None:intergenic | 30.0% | |
| ATTATGTCCAAAAGCAATTC+AGG | - | Chr8:63047806-63047825 | None:intergenic | 30.0% | |
| GCTACATGGTTATATTTGTT+TGG | + | Chr8:63047511-63047530 | MsG0880045704.01.T01:intron | 30.0% | |
| !!! | GATCCATTTTTTCTTCATTC+AGG | + | Chr8:63046958-63046977 | MsG0880045704.01.T01:five_prime_UTR | 30.0% |
| !!! | TGTTGTTGTTTTTTGTGCTT+CGG | + | Chr8:63047868-63047887 | MsG0880045704.01.T01:CDS | 30.0% |
| AAAGTAAGAAGAACGAGAAG+TGG | - | Chr8:63046821-63046840 | None:intergenic | 35.0% | |
| AAGGGGATGAAAAATGGAAT+AGG | + | Chr8:63047662-63047681 | MsG0880045704.01.T01:CDS | 35.0% | |
| AAGTAAGAAGAACGAGAAGT+GGG | - | Chr8:63046820-63046839 | None:intergenic | 35.0% | |
| AAGTGAGTTGCTCAATTTAG+AGG | + | Chr8:63047363-63047382 | MsG0880045704.01.T01:intron | 35.0% | |
| AATAGGTAGCATATCAAAGC+GGG | + | Chr8:63047679-63047698 | MsG0880045704.01.T01:CDS | 35.0% | |
| CCAAATTATTCTTGGTCCTT+AGG | + | Chr8:63048013-63048032 | MsG0880045704.01.T01:intron | 35.0% | |
| CCTAAGGACCAAGAATAATT+TGG | - | Chr8:63048016-63048035 | None:intergenic | 35.0% | |
| GAATAGGTAGCATATCAAAG+CGG | + | Chr8:63047678-63047697 | MsG0880045704.01.T01:CDS | 35.0% | |
| GATCATAAAGCTAGAAGCTT+TGG | + | Chr8:63047576-63047595 | MsG0880045704.01.T01:five_prime_UTR | 35.0% | |
| GTTGCTCAATTTAGAGGATT+CGG | + | Chr8:63047369-63047388 | MsG0880045704.01.T01:intron | 35.0% | |
| TGATCCTAACAGAAACACAA+AGG | - | Chr8:63047561-63047580 | None:intergenic | 35.0% | |
| ! | GCTTTTGGACATAATCTGTA+GGG | + | Chr8:63047811-63047830 | MsG0880045704.01.T01:CDS | 35.0% |
| ! | TAAAGCTAGAAGCTTTGGTT+TGG | + | Chr8:63047581-63047600 | MsG0880045704.01.T01:five_prime_UTR | 35.0% |
| ! | TGCTTTTGGACATAATCTGT+AGG | + | Chr8:63047810-63047829 | MsG0880045704.01.T01:CDS | 35.0% |
| ! | TTTGCCTTTGTGTTTCTGTT+AGG | + | Chr8:63047554-63047573 | MsG0880045704.01.T01:intron | 35.0% |
| !! | ATTTGCTATAAGGAGCTACA+TGG | + | Chr8:63047497-63047516 | MsG0880045704.01.T01:intron | 35.0% |
| !! | CATGCAATGCATTTGCTATA+AGG | + | Chr8:63047487-63047506 | MsG0880045704.01.T01:intron | 35.0% |
| AATCACAAACACTGACACGA+CGG | + | Chr8:63046623-63046642 | MsG0880045704.01.T01:five_prime_UTR | 40.0% | |
| ACACCAAGAATTGGCTATGT+CGG | + | Chr8:63047708-63047727 | MsG0880045704.01.T01:CDS | 40.0% | |
| ATAGGTAGCATATCAAAGCG+GGG | + | Chr8:63047680-63047699 | MsG0880045704.01.T01:CDS | 40.0% | |
| ATCAAAACTCCTCAGCAATG+TGG | + | Chr8:63047926-63047945 | MsG0880045704.01.T01:CDS | 40.0% | |
| ATGTCCAAAAGCAATTCAGG+AGG | - | Chr8:63047803-63047822 | None:intergenic | 40.0% | |
| CAAACAATCCAGCCCAAAAT+TGG | - | Chr8:63047397-63047416 | None:intergenic | 40.0% | |
| CAAACCTAAGTACAACACGA+AGG | - | Chr8:63048141-63048160 | None:intergenic | 40.0% | |
| CCAGTTGAACCTATTCAACA+GGG | + | Chr8:63047761-63047780 | MsG0880045704.01.T01:CDS | 40.0% | |
| CCTTATGTGTATGAATAGCC+CGG | + | Chr8:63048062-63048081 | MsG0880045704.01.T01:intron | 40.0% | |
| CTTCGGTATGTAAATCATGG+AGG | + | Chr8:63047885-63047904 | MsG0880045704.01.T01:CDS | 40.0% | |
| CTTCGTGTTGTACTTAGGTT+TGG | + | Chr8:63048139-63048158 | MsG0880045704.01.T01:CDS | 40.0% | |
| GAGCAAGAAGAAGAAGAAGA+AGG | - | Chr8:63046876-63046895 | None:intergenic | 40.0% | |
| GTGCTTCGGTATGTAAATCA+TGG | + | Chr8:63047882-63047901 | MsG0880045704.01.T01:CDS | 40.0% | |
| TCCAGTTGAACCTATTCAAC+AGG | + | Chr8:63047760-63047779 | MsG0880045704.01.T01:CDS | 40.0% | |
| TCTACCTTCGTGTTGTACTT+AGG | + | Chr8:63048134-63048153 | MsG0880045704.01.T01:CDS | 40.0% | |
| TTGAAGAGAGTGAGACATCT+TGG | + | Chr8:63047834-63047853 | MsG0880045704.01.T01:CDS | 40.0% | |
| ! | ACATAGCCAATTCTTGGTGT+CGG | - | Chr8:63047708-63047727 | None:intergenic | 40.0% |
| ! | AGAGGATTCGGATCCAATTT+TGG | + | Chr8:63047381-63047400 | MsG0880045704.01.T01:intron | 40.0% |
| ! | ATCCGATCCAGTGCTTTATT+CGG | + | Chr8:63048096-63048115 | MsG0880045704.01.T01:CDS | 40.0% |
| ! | GAGGATTCGGATCCAATTTT+GGG | + | Chr8:63047382-63047401 | MsG0880045704.01.T01:intron | 40.0% |
| ! | TCTACCTCCTGAATTGCTTT+TGG | + | Chr8:63047796-63047815 | MsG0880045704.01.T01:CDS | 40.0% |
| !! | CTAGAAGCTTTGGTTTGGAT+TGG | + | Chr8:63047586-63047605 | MsG0880045704.01.T01:five_prime_UTR | 40.0% |
| !! | TCTGCTTTTGAACTCAAACG+TGG | - | Chr8:63046649-63046668 | None:intergenic | 40.0% |
| !! | TTGGATTGGTGCAGTTTGTA+AGG | + | Chr8:63047600-63047619 | MsG0880045704.01.T01:five_prime_UTR | 40.0% |
| AAAACAACAACAGCACGTGC+AGG | - | Chr8:63047860-63047879 | None:intergenic | 45.0% | |
| AAACTCCTCAGCAATGTGGA+AGG | + | Chr8:63047930-63047949 | MsG0880045704.01.T01:CDS | 45.0% | |
| AACCTATTCAACAGGGACAG+TGG | + | Chr8:63047768-63047787 | MsG0880045704.01.T01:CDS | 45.0% | |
| ACCTATTCAACAGGGACAGT+GGG | + | Chr8:63047769-63047788 | MsG0880045704.01.T01:CDS | 45.0% | |
| CCCTGTTGAATAGGTTCAAC+TGG | - | Chr8:63047764-63047783 | None:intergenic | 45.0% | |
| CCGGGCTATTCATACACATA+AGG | - | Chr8:63048065-63048084 | None:intergenic | 45.0% | |
| GAGCTCAAGGGGATGAAAAA+TGG | + | Chr8:63047656-63047675 | MsG0880045704.01.T01:CDS | 45.0% | |
| GGTTCAACTGGAGTTACATC+CGG | - | Chr8:63047752-63047771 | None:intergenic | 45.0% | |
| GTCAAAGTCACATGTTGCTC+CGG | + | Chr8:63047730-63047749 | MsG0880045704.01.T01:CDS | 45.0% | |
| TGACCGACATAGCCAATTCT+TGG | - | Chr8:63047714-63047733 | None:intergenic | 45.0% | |
| TGTTCCTCCGAATAAAGCAC+TGG | - | Chr8:63048106-63048125 | None:intergenic | 45.0% | |
| TTGGTGCAGTTTGTAAGGTG+TGG | + | Chr8:63047605-63047624 | MsG0880045704.01.T01:five_prime_UTR | 45.0% | |
| ! | ATTCGGATCCAATTTTGGGC+TGG | + | Chr8:63047386-63047405 | MsG0880045704.01.T01:intron | 45.0% |
| ! | GATTCTGGAGAATCGCGTTT+GGG | - | Chr8:63046770-63046789 | None:intergenic | 45.0% |
| !! | CTCCGAATAAAGCACTGGAT+CGG | - | Chr8:63048101-63048120 | None:intergenic | 45.0% |
| AACGCGATTCTCCAGAATCG+CGG | + | Chr8:63046771-63046790 | MsG0880045704.01.T01:five_prime_UTR | 50.0% | |
| AAGTATAGTCCGCGAGCTCA+AGG | + | Chr8:63047643-63047662 | MsG0880045704.01.T01:CDS | 50.0% | |
| AGTATAGTCCGCGAGCTCAA+GGG | + | Chr8:63047644-63047663 | MsG0880045704.01.T01:CDS | 50.0% | |
| ATCGGATAATCACGAGGACC+GGG | - | Chr8:63048083-63048102 | None:intergenic | 50.0% | |
| CACTGGATCGGATAATCACG+AGG | - | Chr8:63048089-63048108 | None:intergenic | 50.0% | |
| GATCGGATAATCACGAGGAC+CGG | - | Chr8:63048084-63048103 | None:intergenic | 50.0% | |
| GTGATCCTTCCACATTGCTG+AGG | - | Chr8:63047938-63047957 | None:intergenic | 50.0% | |
| ! | CGATCCAGTGCTTTATTCGG+AGG | + | Chr8:63048099-63048118 | MsG0880045704.01.T01:CDS | 50.0% |
| ! | CGATTCTGGAGAATCGCGTT+TGG | - | Chr8:63046771-63046790 | None:intergenic | 50.0% |
| ! | TTTTCATCCCCTTGAGCTCG+CGG | - | Chr8:63047655-63047674 | None:intergenic | 50.0% |
| ATTCTCCAGAATCGCGGTGG+CGG | + | Chr8:63046777-63046796 | MsG0880045704.01.T01:five_prime_UTR | 55.0% | |
| GCCCACTGTCCCTGTTGAAT+AGG | - | Chr8:63047773-63047792 | None:intergenic | 55.0% | |
| GGGGTTCCGACACCAAGAAT+TGG | + | Chr8:63047699-63047718 | MsG0880045704.01.T01:CDS | 55.0% | |
| GTATAGTCCGCGAGCTCAAG+GGG | + | Chr8:63047645-63047664 | MsG0880045704.01.T01:CDS | 55.0% | |
| GCGATTCTCCAGAATCGCGG+TGG | + | Chr8:63046774-63046793 | MsG0880045704.01.T01:five_prime_UTR | 60.0% | |
| CTTCACCGCCACCGCGATTC+TGG | - | Chr8:63046785-63046804 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 63046588 | 63048184 | 63046588 | ID=MsG0880045704.01;Name=MsG0880045704.01 |
| Chr8 | mRNA | 63046588 | 63048184 | 63046588 | ID=MsG0880045704.01.T01;Parent=MsG0880045704.01;Name=MsG0880045704.01.T01;_AED=0.49;_eAED=0.49;_QI=448|1|0.66|1|0.5|0.33|3|0|150 |
| Chr8 | exon | 63046588 | 63046979 | 63046588 | ID=MsG0880045704.01.T01:exon:24098;Parent=MsG0880045704.01.T01 |
| Chr8 | exon | 63047576 | 63047979 | 63047576 | ID=MsG0880045704.01.T01:exon:24099;Parent=MsG0880045704.01.T01 |
| Chr8 | exon | 63048080 | 63048184 | 63048080 | ID=MsG0880045704.01.T01:exon:24100;Parent=MsG0880045704.01.T01 |
| Chr8 | five_prime_UTR | 63046588 | 63046979 | 63046588 | ID=MsG0880045704.01.T01:five_prime_utr;Parent=MsG0880045704.01.T01 |
| Chr8 | five_prime_UTR | 63047576 | 63047631 | 63047576 | ID=MsG0880045704.01.T01:five_prime_utr;Parent=MsG0880045704.01.T01 |
| Chr8 | CDS | 63047632 | 63047979 | 63047632 | ID=MsG0880045704.01.T01:cds;Parent=MsG0880045704.01.T01 |
| Chr8 | CDS | 63048080 | 63048184 | 63048080 | ID=MsG0880045704.01.T01:cds;Parent=MsG0880045704.01.T01 |
| Gene Sequence |
| Protein sequence |
