Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005090.01.T01 | KEH43449.1 | 71.171 | 222 | 15 | 3 | 1 | 178 | 1 | 217 | 6.41E-98 | 293 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005090.01.T01 | Q9FX67 | 64.474 | 76 | 26 | 1 | 11 | 86 | 20 | 94 | 3.39E-24 | 99.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005090.01.T01 | A0A072VN79 | 71.171 | 222 | 15 | 3 | 1 | 178 | 1 | 217 | 3.06e-98 | 293 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180005067.01 | MsG0180005090.01 | 0.947769 | 3.523283e-106 | 6.278439e-101 |
| MsG0180005090.01 | MsG0780036733.01 | 0.811324 | 7.409756e-51 | 4.572684e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005090.01.T01 | MTR_1g093080 | 71.171 | 222 | 15 | 3 | 1 | 178 | 1 | 217 | 7.76e-102 | 293 |
| MsG0180005090.01.T01 | MTR_1g093080 | 71.171 | 222 | 15 | 3 | 1 | 178 | 1 | 217 | 4.42e-101 | 293 |
| MsG0180005090.01.T01 | MTR_1g093080 | 71.171 | 222 | 15 | 3 | 1 | 178 | 1 | 217 | 3.70e-100 | 294 |
| MsG0180005090.01.T01 | MTR_5g054300 | 44.131 | 213 | 68 | 5 | 1 | 174 | 10 | 210 | 1.97e-39 | 137 |
| MsG0180005090.01.T01 | MTR_4g113140 | 38.542 | 96 | 43 | 3 | 2 | 97 | 29 | 108 | 5.73e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005090.01.T01 | AT3G25790 | 63.636 | 77 | 27 | 1 | 10 | 86 | 20 | 95 | 1.08e-25 | 99.8 |
| MsG0180005090.01.T01 | AT1G13300 | 64.474 | 76 | 26 | 1 | 11 | 86 | 20 | 94 | 3.46e-25 | 99.8 |
| MsG0180005090.01.T01 | AT3G25790 | 63.636 | 77 | 27 | 1 | 10 | 86 | 20 | 95 | 5.50e-25 | 99.4 |
| MsG0180005090.01.T01 | AT1G68670 | 66.234 | 77 | 21 | 2 | 10 | 85 | 16 | 88 | 7.21e-25 | 99.4 |
| MsG0180005090.01.T01 | AT1G25550 | 34.928 | 209 | 83 | 6 | 10 | 178 | 20 | 215 | 2.38e-23 | 94.0 |
| MsG0180005090.01.T01 | AT1G25550 | 34.928 | 209 | 83 | 6 | 10 | 178 | 20 | 215 | 1.31e-22 | 92.8 |
| MsG0180005090.01.T01 | AT2G03500 | 33.103 | 145 | 54 | 5 | 8 | 118 | 36 | 171 | 1.25e-11 | 62.4 |
Find 92 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATGCAGCGTTTCAAAA+TGG | 0.179894 | 1:-86824436 | MsG0180005090.01.T01:exon |
| GACAAAGTGGTTGCACCTTC+TGG | 0.259701 | 1:-86822896 | MsG0180005090.01.T01:three_prime_UTR |
| CATATCTACAAACCTGTAAA+TGG | 0.279375 | 1:+86823295 | None:intergenic |
| TGAAGTCAAAAGCCATTTAC+AGG | 0.284068 | 1:-86823307 | MsG0180005090.01.T01:intron |
| GATGTCTCCAACATTGTTAC+TGG | 0.294311 | 1:+86823599 | None:intergenic |
| AACGAAAGAGGAAGTTCTTT+AGG | 0.297245 | 1:+86824357 | None:intergenic |
| ATATCGATGAAGAAAGAATA+TGG | 0.311789 | 1:+86824542 | None:intergenic |
| ACTCTATCTTCTTTATGAAA+TGG | 0.335587 | 1:+86823708 | None:intergenic |
| ATTACCTCTCTGATTTGCTT+TGG | 0.356836 | 1:+86823354 | None:intergenic |
| CTTTCGTTATTTGTTGAACT+TGG | 0.382926 | 1:+86823021 | None:intergenic |
| AATAACATTATACAACAAAA+AGG | 0.387476 | 1:+86822613 | None:intergenic |
| CCCCACCATACTCTTGTTGT+TGG | 0.395076 | 1:+86822947 | None:intergenic |
| GGAATAAACTCTTCTAAAAC+AGG | 0.409660 | 1:+86824101 | None:intergenic |
| TTTGTCCAACAACAAGAGTA+TGG | 0.414336 | 1:-86822952 | MsG0180005090.01.T01:three_prime_UTR |
| GACGTTCTTGTTCTAATGCT+TGG | 0.420567 | 1:+86824397 | None:intergenic |
| ACAATGCAGCGTTTCAAAAT+GGG | 0.423030 | 1:-86824435 | MsG0180005090.01.T01:CDS |
| GTAGCTTCATCAACAACAAC+AGG | 0.429695 | 1:-86822925 | MsG0180005090.01.T01:three_prime_UTR |
| TGTGGAAGCAAGAGAGAGAG+TGG | 0.430560 | 1:+86824517 | None:intergenic |
| TGCTCAAACCTCTTGAACTC+TGG | 0.432408 | 1:+86822824 | None:intergenic |
| GCAGCGACGGTGCTGGTCGC+AGG | 0.434166 | 1:-86823548 | MsG0180005090.01.T01:CDS |
| GTTTATTCCAATTAAGAAAA+GGG | 0.437351 | 1:-86824087 | MsG0180005090.01.T01:CDS |
| GTTGCACAAGCGATTCTTGA+AGG | 0.440339 | 1:-86823524 | MsG0180005090.01.T01:exon |
| GAATGAAGGAGAAACAAAGA+AGG | 0.444900 | 1:+86824633 | None:intergenic |
| AGTTTATTCCAATTAAGAAA+AGG | 0.446516 | 1:-86824088 | MsG0180005090.01.T01:CDS |
| GCTTGTCGACAACAATTGTC+TGG | 0.459321 | 1:-86824191 | MsG0180005090.01.T01:CDS |
| TTGAAGGCGCTTCAGCAACT+TGG | 0.469776 | 1:-86823508 | MsG0180005090.01.T01:exon |
| GTGGAAGCAAGAGAGAGAGT+GGG | 0.472009 | 1:+86824518 | None:intergenic |
| GAGACAGTTCGCGAAGAACT+CGG | 0.475399 | 1:+86824662 | None:intergenic |
| TATCGATGAAGAAAGAATAT+GGG | 0.478424 | 1:+86824543 | None:intergenic |
| AGAGAGGTAATGAATGTTGA+TGG | 0.478733 | 1:-86823342 | MsG0180005090.01.T01:three_prime_UTR |
| GCATTCAATCTCAGATGAAA+GGG | 0.480171 | 1:-86822804 | MsG0180005090.01.T01:three_prime_UTR |
| AGGTGCTGCTGTTTGTGAAT+TGG | 0.480961 | 1:+86822996 | None:intergenic |
| CTCTCTGATTTGCTTTGGTG+TGG | 0.488332 | 1:+86823359 | None:intergenic |
| GTGTTGGAATTGAAGAGAAA+TGG | 0.488831 | 1:-86823753 | MsG0180005090.01.T01:CDS |
| ACAACTGAGTATAATTTGAA+TGG | 0.489356 | 1:-86824164 | MsG0180005090.01.T01:CDS |
| ACATCAAAGAGACGAGAAAG+AGG | 0.490607 | 1:-86823581 | MsG0180005090.01.T01:CDS |
| TCAATAACCAGGGGAAGTAT+TGG | 0.491273 | 1:+86822715 | None:intergenic |
| TTGGTCTTCTAGTATGCAAC+CGG | 0.498211 | 1:+86823040 | None:intergenic |
| CTCGGGAAAATATCGCGGGC+GGG | 0.498473 | 1:+86824680 | None:intergenic |
| ACAAGTGAATTGTTAAGTAA+AGG | 0.498649 | 1:-86823675 | MsG0180005090.01.T01:CDS |
| AGACAGTTCGCGAAGAACTC+GGG | 0.499976 | 1:+86824663 | None:intergenic |
| TCGGGAAAATATCGCGGGCG+GGG | 0.502147 | 1:+86824681 | None:intergenic |
| ATGTTGCCTACAAGGACAAA+AGG | 0.503411 | 1:+86822976 | None:intergenic |
| AAGGCGCTTCAGCAACTTGG+TGG | 0.504237 | 1:-86823505 | MsG0180005090.01.T01:three_prime_UTR |
| TTAATAAACCAGAGTTCAAG+AGG | 0.515038 | 1:-86822832 | MsG0180005090.01.T01:three_prime_UTR |
| ACTTGAGGATGTGTGGCTAC+TGG | 0.518302 | 1:+86822863 | None:intergenic |
| AGCATTCAATCTCAGATGAA+AGG | 0.522044 | 1:-86822805 | MsG0180005090.01.T01:three_prime_UTR |
| AAGAGAAATGGAAGTGGTGG+TGG | 0.523432 | 1:-86823741 | MsG0180005090.01.T01:CDS |
| TGGAAGCAAGAGAGAGAGTG+GGG | 0.523886 | 1:+86824519 | None:intergenic |
| TGTGTAGAGGATGAAGATGT+AGG | 0.529070 | 1:+86822746 | None:intergenic |
| AATGAAGGAGAAACAAAGAA+GGG | 0.534302 | 1:+86824634 | None:intergenic |
| TCCAACAACAAGAGTATGGT+GGG | 0.538170 | 1:-86822948 | MsG0180005090.01.T01:three_prime_UTR |
| AGAGAAAGCAGCGACGGTGC+TGG | 0.540249 | 1:-86823555 | MsG0180005090.01.T01:CDS |
| AGAACTCACGGCAGCTACAC+CGG | 0.545612 | 1:+86823638 | None:intergenic |
| TTATTAATTGTAGCAACTTG+AGG | 0.553389 | 1:+86822848 | None:intergenic |
| TTTGAAACGCTGCATTGTGA+AGG | 0.557389 | 1:+86824440 | None:intergenic |
| GTAACGAGTTCTAACGAAAG+AGG | 0.565892 | 1:+86824345 | None:intergenic |
| GGCAGCTACACCGGTCGAAG+AGG | 0.574491 | 1:+86823647 | None:intergenic |
| AAAATTAAAACTCAATAACC+AGG | 0.575545 | 1:+86822704 | None:intergenic |
| ATAATCGATTCTGAAGAGAA+TGG | 0.575641 | 1:+86824489 | None:intergenic |
| AGGAAAAGAGAAAGCAGCGA+CGG | 0.577313 | 1:-86823561 | MsG0180005090.01.T01:CDS |
| ACTACTACCAATACTTCCCC+TGG | 0.577357 | 1:-86822722 | MsG0180005090.01.T01:three_prime_UTR |
| TAAGAAAACAGTGCCTGTGT+TGG | 0.581215 | 1:-86823769 | MsG0180005090.01.T01:CDS |
| AAAATGGTTTATGTAAGAAG+AGG | 0.585452 | 1:+86824465 | None:intergenic |
| AAAGGACAACCCTCTTCGAC+CGG | 0.587220 | 1:-86823657 | MsG0180005090.01.T01:CDS |
| AAATTAAAACTCAATAACCA+GGG | 0.590216 | 1:+86822705 | None:intergenic |
| GCAGCTACACCGGTCGAAGA+GGG | 0.597437 | 1:+86823648 | None:intergenic |
| AATCACATACAACATAAATG+AGG | 0.600136 | 1:+86822589 | None:intergenic |
| TTTCTCTTCAATTCCAACAC+AGG | 0.600323 | 1:+86823756 | None:intergenic |
| CTTGTTCTAAAGAGATAACA+TGG | 0.602698 | 1:+86822489 | None:intergenic |
| AGAACTCGGGAAAATATCGC+GGG | 0.605764 | 1:+86824676 | None:intergenic |
| ATTGGTAGTAGTATGTGTAG+AGG | 0.610237 | 1:+86822733 | None:intergenic |
| AATGTCACCAGTAACAATGT+TGG | 0.610482 | 1:-86823606 | MsG0180005090.01.T01:CDS |
| GTCCAACAACAAGAGTATGG+TGG | 0.618792 | 1:-86822949 | MsG0180005090.01.T01:three_prime_UTR |
| GAACAGACAACATCAACAGA+TGG | 0.623810 | 1:-86824125 | MsG0180005090.01.T01:CDS |
| ATTAGCCGCATTAGAACTCA+CGG | 0.629576 | 1:+86823626 | None:intergenic |
| TCGTTAGAACTCGTTACACA+AGG | 0.638093 | 1:-86824339 | MsG0180005090.01.T01:intron |
| GAAAGGGGTAATAACAGTGA+AGG | 0.640994 | 1:-86822788 | MsG0180005090.01.T01:three_prime_UTR |
| TTGAAGAGAAATGGAAGTGG+TGG | 0.651388 | 1:-86823744 | MsG0180005090.01.T01:CDS |
| CATTCAATCTCAGATGAAAG+GGG | 0.655574 | 1:-86822803 | MsG0180005090.01.T01:three_prime_UTR |
| ACTGGTGCATAGATTCCAGA+AGG | 0.656305 | 1:+86822881 | None:intergenic |
| ACTCGGGAAAATATCGCGGG+CGG | 0.656340 | 1:+86824679 | None:intergenic |
| AGCTGCCGTGAGTTCTAATG+CGG | 0.671481 | 1:-86823631 | MsG0180005090.01.T01:CDS |
| AAGAACTCGGGAAAATATCG+CGG | 0.677969 | 1:+86824675 | None:intergenic |
| CAACAGGGGAAATGACAAAG+TGG | 0.680420 | 1:-86822909 | MsG0180005090.01.T01:three_prime_UTR |
| TGTAGCAACTTGAGGATGTG+TGG | 0.683531 | 1:+86822856 | None:intergenic |
| GAATTGAAGAGAAATGGAAG+TGG | 0.689165 | 1:-86823747 | MsG0180005090.01.T01:CDS |
| TAGCTTCATCAACAACAACA+GGG | 0.693117 | 1:-86822924 | MsG0180005090.01.T01:three_prime_UTR |
| AATTAAAACTCAATAACCAG+GGG | 0.700665 | 1:+86822706 | None:intergenic |
| CCAACAACAAGAGTATGGTG+GGG | 0.702776 | 1:-86822947 | MsG0180005090.01.T01:three_prime_UTR |
| AGCTTCATCAACAACAACAG+GGG | 0.709783 | 1:-86822923 | MsG0180005090.01.T01:three_prime_UTR |
| CACACCAAAGCAAATCAGAG+AGG | 0.720773 | 1:-86823358 | MsG0180005090.01.T01:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCATATAAAAAAAACAAAA+AGG | + | Chr1:86822857-86822876 | None:intergenic | 10.0% |
| !! | TCATATAAAAAAAACAAAAA+GGG | + | Chr1:86822856-86822875 | None:intergenic | 10.0% |
| !!! | AAAAAAATTGATTTTAATTG+AGG | + | Chr1:86824078-86824097 | None:intergenic | 10.0% |
| !!! | AAAATAATTTTGGATTTTTT+TGG | - | Chr1:86822926-86822945 | MsG0180005090.01.T01:three_prime_UTR | 10.0% |
| !! | AATAACATTATACAACAAAA+AGG | + | Chr1:86824549-86824568 | None:intergenic | 15.0% |
| !!! | AAGTTTGTATTTTTATTATC+TGG | - | Chr1:86822886-86822905 | MsG0180005090.01.T01:three_prime_UTR | 15.0% |
| !!! | AGTTTGTATTTTTATTATCT+GGG | - | Chr1:86822887-86822906 | MsG0180005090.01.T01:three_prime_UTR | 15.0% |
| !!! | TTACTTTTTGTTAAACTAAA+GGG | - | Chr1:86823302-86823321 | MsG0180005090.01.T01:intron | 15.0% |
| !!! | TTTACTTTTTGTTAAACTAA+AGG | - | Chr1:86823301-86823320 | MsG0180005090.01.T01:intron | 15.0% |
| !! | AAAAGAAAGAAAAAGAATGA+AGG | + | Chr1:86822543-86822562 | None:intergenic | 20.0% |
| !! | AAAATTAAAACTCAATAACC+AGG | + | Chr1:86824458-86824477 | None:intergenic | 20.0% |
| !! | AAATTAAAACTCAATAACCA+GGG | + | Chr1:86824457-86824476 | None:intergenic | 20.0% |
| !! | AGTTTATTCCAATTAAGAAA+AGG | - | Chr1:86823071-86823090 | MsG0180005090.01.T01:intron | 20.0% |
| !! | GTTTATTCCAATTAAGAAAA+GGG | - | Chr1:86823072-86823091 | MsG0180005090.01.T01:intron | 20.0% |
| !!! | ATTTTTCACAAAACAAAACA+AGG | + | Chr1:86823355-86823374 | None:intergenic | 20.0% |
| !!! | TGTTTTGTGAAAAATTGTTT+AGG | - | Chr1:86823360-86823379 | MsG0180005090.01.T01:three_prime_UTR | 20.0% |
| ! | AAAATGGTTTATGTAAGAAG+AGG | + | Chr1:86822697-86822716 | None:intergenic | 25.0% |
| ! | AAATTGACAACAAAAGAGTT+GGG | + | Chr1:86823896-86823915 | None:intergenic | 25.0% |
| ! | AATCACATACAACATAAATG+AGG | + | Chr1:86824573-86824592 | None:intergenic | 25.0% |
| ! | AATTAAAACTCAATAACCAG+GGG | + | Chr1:86824456-86824475 | None:intergenic | 25.0% |
| ! | ACAACTGAGTATAATTTGAA+TGG | - | Chr1:86822995-86823014 | MsG0180005090.01.T01:three_prime_UTR | 25.0% |
| ! | ACAAGTGAATTGTTAAGTAA+AGG | - | Chr1:86823484-86823503 | MsG0180005090.01.T01:intron | 25.0% |
| ! | ACTCTATCTTCTTTATGAAA+TGG | + | Chr1:86823454-86823473 | None:intergenic | 25.0% |
| ! | ATAATAAGAAGAAATCTGAC+TGG | - | Chr1:86823178-86823197 | MsG0180005090.01.T01:intron | 25.0% |
| ! | ATATCGATGAAGAAAGAATA+TGG | + | Chr1:86822620-86822639 | None:intergenic | 25.0% |
| ! | TATCGATGAAGAAAGAATAT+GGG | + | Chr1:86822619-86822638 | None:intergenic | 25.0% |
| ! | TCTGAAGAAGAATCAAAAAT+TGG | + | Chr1:86822595-86822614 | None:intergenic | 25.0% |
| ! | TTATTAATTGTAGCAACTTG+AGG | + | Chr1:86824314-86824333 | None:intergenic | 25.0% |
| AATGAAGGAGAAACAAAGAA+GGG | + | Chr1:86822528-86822547 | None:intergenic | 30.0% | |
| ATTATTACCTCTTCAGATGA+AGG | + | Chr1:86823234-86823253 | None:intergenic | 30.0% | |
| CATATCTACAAACCTGTAAA+TGG | + | Chr1:86823867-86823886 | None:intergenic | 30.0% | |
| GAAATCCTATGCAATTGAAA+GGG | + | Chr1:86824000-86824019 | None:intergenic | 30.0% | |
| GAAATTGACAACAAAAGAGT+TGG | + | Chr1:86823897-86823916 | None:intergenic | 30.0% | |
| TGAAATCCTATGCAATTGAA+AGG | + | Chr1:86824001-86824020 | None:intergenic | 30.0% | |
| TGGTAGTATCCATCTAAAAA+AGG | + | Chr1:86824653-86824672 | None:intergenic | 30.0% | |
| TTAATAAACCAGAGTTCAAG+AGG | - | Chr1:86824327-86824346 | MsG0180005090.01.T01:intron | 30.0% | |
| ! | ATAATCGATTCTGAAGAGAA+TGG | + | Chr1:86822673-86822692 | None:intergenic | 30.0% |
| ! | CTTTCGTTATTTGTTGAACT+TGG | + | Chr1:86824141-86824160 | None:intergenic | 30.0% |
| !! | CTTGTTCTAAAGAGATAACA+TGG | + | Chr1:86824673-86824692 | None:intergenic | 30.0% |
| !! | GGAATAAACTCTTCTAAAAC+AGG | + | Chr1:86823061-86823080 | None:intergenic | 30.0% |
| !!! | GTTTTTTGCTTCTGTTCTAT+AGG | - | Chr1:86823775-86823794 | MsG0180005090.01.T01:CDS | 30.0% |
| !!! | TAAGTCACACCTTTTTTAGA+TGG | - | Chr1:86824641-86824660 | MsG0180005090.01.T01:five_prime_UTR | 30.0% |
| !!! | TTTTGACTTCATCATTTGTG+AGG | + | Chr1:86823843-86823862 | None:intergenic | 30.0% |
| AACGAAAGAGGAAGTTCTTT+AGG | + | Chr1:86822805-86822824 | None:intergenic | 35.0% | |
| AATGTCACCAGTAACAATGT+TGG | - | Chr1:86823553-86823572 | MsG0180005090.01.T01:CDS | 35.0% | |
| ACAATGCAGCGTTTCAAAAT+GGG | - | Chr1:86822724-86822743 | MsG0180005090.01.T01:three_prime_UTR | 35.0% | |
| AGAGAGGTAATGAATGTTGA+TGG | - | Chr1:86823817-86823836 | MsG0180005090.01.T01:intron | 35.0% | |
| AGCATTCAATCTCAGATGAA+AGG | - | Chr1:86824354-86824373 | MsG0180005090.01.T01:CDS | 35.0% | |
| CATTCAATCTCAGATGAAAG+GGG | - | Chr1:86824356-86824375 | MsG0180005090.01.T01:CDS | 35.0% | |
| GAATGAAGGAGAAACAAAGA+AGG | + | Chr1:86822529-86822548 | None:intergenic | 35.0% | |
| GAATTGAAGAGAAATGGAAG+TGG | - | Chr1:86823412-86823431 | MsG0180005090.01.T01:intron | 35.0% | |
| GCATTCAATCTCAGATGAAA+GGG | - | Chr1:86824355-86824374 | MsG0180005090.01.T01:CDS | 35.0% | |
| GTGTTGGAATTGAAGAGAAA+TGG | - | Chr1:86823406-86823425 | MsG0180005090.01.T01:intron | 35.0% | |
| TAGCTTCATCAACAACAACA+GGG | - | Chr1:86824235-86824254 | MsG0180005090.01.T01:intron | 35.0% | |
| TGAAGTCAAAAGCCATTTAC+AGG | - | Chr1:86823852-86823871 | MsG0180005090.01.T01:intron | 35.0% | |
| TTAGTCCCTTTCAATTGCAT+AGG | - | Chr1:86823992-86824011 | MsG0180005090.01.T01:intron | 35.0% | |
| TTTCTCTTCAATTCCAACAC+AGG | + | Chr1:86823406-86823425 | None:intergenic | 35.0% | |
| TTTGTCCAACAACAAGAGTA+TGG | - | Chr1:86824207-86824226 | MsG0180005090.01.T01:intron | 35.0% | |
| ! | ATTGGTAGTAGTATGTGTAG+AGG | + | Chr1:86824429-86824448 | None:intergenic | 35.0% |
| ! | GAAGAAGCCCTTTTCTTAAT+TGG | + | Chr1:86823082-86823101 | None:intergenic | 35.0% |
| ! | TCTGTTTTGCACAGAAATAC+CGG | - | Chr1:86824100-86824119 | MsG0180005090.01.T01:CDS | 35.0% |
| !! | ATTACCTCTCTGATTTGCTT+TGG | + | Chr1:86823808-86823827 | None:intergenic | 35.0% |
| AAGAACTCGGGAAAATATCG+CGG | + | Chr1:86822487-86822506 | None:intergenic | 40.0% | |
| ACATCAAAGAGACGAGAAAG+AGG | - | Chr1:86823578-86823597 | MsG0180005090.01.T01:CDS | 40.0% | |
| AGCTTCATCAACAACAACAG+GGG | - | Chr1:86824236-86824255 | MsG0180005090.01.T01:intron | 40.0% | |
| ATGTTGCCTACAAGGACAAA+AGG | + | Chr1:86824186-86824205 | None:intergenic | 40.0% | |
| ATTAGCCGCATTAGAACTCA+CGG | + | Chr1:86823536-86823555 | None:intergenic | 40.0% | |
| CACAATGCAGCGTTTCAAAA+TGG | - | Chr1:86822723-86822742 | MsG0180005090.01.T01:three_prime_UTR | 40.0% | |
| CTGCATTGTGAAGGCAAAAA+TGG | + | Chr1:86822713-86822732 | None:intergenic | 40.0% | |
| GAAAGGGGTAATAACAGTGA+AGG | - | Chr1:86824371-86824390 | MsG0180005090.01.T01:CDS | 40.0% | |
| GAACAGACAACATCAACAGA+TGG | - | Chr1:86823034-86823053 | MsG0180005090.01.T01:three_prime_UTR | 40.0% | |
| GACGTTCTTGTTCTAATGCT+TGG | + | Chr1:86822765-86822784 | None:intergenic | 40.0% | |
| GATGTCTCCAACATTGTTAC+TGG | + | Chr1:86823563-86823582 | None:intergenic | 40.0% | |
| GGACAAAAATGTTGCCTACA+AGG | + | Chr1:86824194-86824213 | None:intergenic | 40.0% | |
| GGCTTAGATCTGTTCAGTTA+TGG | - | Chr1:86823199-86823218 | MsG0180005090.01.T01:intron | 40.0% | |
| GTAGCTTCATCAACAACAAC+AGG | - | Chr1:86824234-86824253 | MsG0180005090.01.T01:intron | 40.0% | |
| TAAGAAAACAGTGCCTGTGT+TGG | - | Chr1:86823390-86823409 | MsG0180005090.01.T01:intron | 40.0% | |
| TCGTTAGAACTCGTTACACA+AGG | - | Chr1:86822820-86822839 | MsG0180005090.01.T01:three_prime_UTR | 40.0% | |
| TGTGTAGAGGATGAAGATGT+AGG | + | Chr1:86824416-86824435 | None:intergenic | 40.0% | |
| TTCAGATCCTTCATCTGAAG+AGG | - | Chr1:86823224-86823243 | MsG0180005090.01.T01:intron | 40.0% | |
| TTGAAGAGAAATGGAAGTGG+TGG | - | Chr1:86823415-86823434 | MsG0180005090.01.T01:intron | 40.0% | |
| ! | GTAACGAGTTCTAACGAAAG+AGG | + | Chr1:86822817-86822836 | None:intergenic | 40.0% |
| ! | TCAATAACCAGGGGAAGTAT+TGG | + | Chr1:86824447-86824466 | None:intergenic | 40.0% |
| ! | TCCAACAACAAGAGTATGGT+GGG | - | Chr1:86824211-86824230 | MsG0180005090.01.T01:intron | 40.0% |
| ! | TTGGTCTTCTAGTATGCAAC+CGG | + | Chr1:86824122-86824141 | None:intergenic | 40.0% |
| ! | TTTGAAACGCTGCATTGTGA+AGG | + | Chr1:86822722-86822741 | None:intergenic | 40.0% |
| AAGAGAAATGGAAGTGGTGG+TGG | - | Chr1:86823418-86823437 | MsG0180005090.01.T01:intron | 45.0% | |
| ACTACTACCAATACTTCCCC+TGG | - | Chr1:86824437-86824456 | MsG0180005090.01.T01:exon | 45.0% | |
| ACTGGTGCATAGATTCCAGA+AGG | + | Chr1:86824281-86824300 | None:intergenic | 45.0% | |
| AGAACTCGGGAAAATATCGC+GGG | + | Chr1:86822486-86822505 | None:intergenic | 45.0% | |
| AGGAAAAGAGAAAGCAGCGA+CGG | - | Chr1:86823598-86823617 | MsG0180005090.01.T01:CDS | 45.0% | |
| CAACAGGGGAAATGACAAAG+TGG | - | Chr1:86824250-86824269 | MsG0180005090.01.T01:intron | 45.0% | |
| CACACCAAAGCAAATCAGAG+AGG | - | Chr1:86823801-86823820 | MsG0180005090.01.T01:intron | 45.0% | |
| GCTTGTCGACAACAATTGTC+TGG | - | Chr1:86822968-86822987 | MsG0180005090.01.T01:three_prime_UTR | 45.0% | |
| GTTGCACAAGCGATTCTTGA+AGG | - | Chr1:86823635-86823654 | MsG0180005090.01.T01:CDS | 45.0% | |
| TGCTCAAACCTCTTGAACTC+TGG | + | Chr1:86824338-86824357 | None:intergenic | 45.0% | |
| TGTAGCAACTTGAGGATGTG+TGG | + | Chr1:86824306-86824325 | None:intergenic | 45.0% | |
| ! | CCAACAACAAGAGTATGGTG+GGG | - | Chr1:86824212-86824231 | MsG0180005090.01.T01:intron | 45.0% |
| ! | CTGAAGAGAATGGCGTTTTG+TGG | + | Chr1:86822663-86822682 | None:intergenic | 45.0% |
| ! | GTCCAACAACAAGAGTATGG+TGG | - | Chr1:86824210-86824229 | MsG0180005090.01.T01:intron | 45.0% |
| !! | AGGTGCTGCTGTTTGTGAAT+TGG | + | Chr1:86824166-86824185 | None:intergenic | 45.0% |
| !! | CTCTCTGATTTGCTTTGGTG+TGG | + | Chr1:86823803-86823822 | None:intergenic | 45.0% |
| !!! | TTATTTTTGAAAAATAATTT+TGG | - | Chr1:86822916-86822935 | MsG0180005090.01.T01:three_prime_UTR | 5.0% |
| AAAGGACAACCCTCTTCGAC+CGG | - | Chr1:86823502-86823521 | MsG0180005090.01.T01:three_prime_UTR | 50.0% | |
| ACTTGAGGATGTGTGGCTAC+TGG | + | Chr1:86824299-86824318 | None:intergenic | 50.0% | |
| AGACAGTTCGCGAAGAACTC+GGG | + | Chr1:86822499-86822518 | None:intergenic | 50.0% | |
| GACAAAGTGGTTGCACCTTC+TGG | - | Chr1:86824263-86824282 | MsG0180005090.01.T01:intron | 50.0% | |
| GAGACAGTTCGCGAAGAACT+CGG | + | Chr1:86822500-86822519 | None:intergenic | 50.0% | |
| GTGGAAGCAAGAGAGAGAGT+GGG | + | Chr1:86822644-86822663 | None:intergenic | 50.0% | |
| TGGAAGCAAGAGAGAGAGTG+GGG | + | Chr1:86822643-86822662 | None:intergenic | 50.0% | |
| TGTGGAAGCAAGAGAGAGAG+TGG | + | Chr1:86822645-86822664 | None:intergenic | 50.0% | |
| ! | AGCTGCCGTGAGTTCTAATG+CGG | - | Chr1:86823528-86823547 | MsG0180005090.01.T01:CDS | 50.0% |
| ! | CCCCACCATACTCTTGTTGT+TGG | + | Chr1:86824215-86824234 | None:intergenic | 50.0% |
| ! | GCAGCACCTTTTGTCCTTGT+AGG | - | Chr1:86824177-86824196 | MsG0180005090.01.T01:CDS | 50.0% |
| !! | TTGAAGGCGCTTCAGCAACT+TGG | - | Chr1:86823651-86823670 | MsG0180005090.01.T01:CDS | 50.0% |
| ACTCGGGAAAATATCGCGGG+CGG | + | Chr1:86822483-86822502 | None:intergenic | 55.0% | |
| AGAACTCACGGCAGCTACAC+CGG | + | Chr1:86823524-86823543 | None:intergenic | 55.0% | |
| ! | AAGGCGCTTCAGCAACTTGG+TGG | - | Chr1:86823654-86823673 | MsG0180005090.01.T01:CDS | 55.0% |
| AGAGAAAGCAGCGACGGTGC+TGG | - | Chr1:86823604-86823623 | MsG0180005090.01.T01:CDS | 60.0% | |
| CTCGGGAAAATATCGCGGGC+GGG | + | Chr1:86822482-86822501 | None:intergenic | 60.0% | |
| GCAGCTACACCGGTCGAAGA+GGG | + | Chr1:86823514-86823533 | None:intergenic | 60.0% | |
| TCGGGAAAATATCGCGGGCG+GGG | + | Chr1:86822481-86822500 | None:intergenic | 60.0% | |
| GGCAGCTACACCGGTCGAAG+AGG | + | Chr1:86823515-86823534 | None:intergenic | 65.0% | |
| !! | GCAGCGACGGTGCTGGTCGC+AGG | - | Chr1:86823611-86823630 | MsG0180005090.01.T01:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 86822468 | 86824713 | 86822468 | ID=MsG0180005090.01;Name=MsG0180005090.01 |
| Chr1 | mRNA | 86822468 | 86824713 | 86822468 | ID=MsG0180005090.01.T01;Parent=MsG0180005090.01;Name=MsG0180005090.01.T01;_AED=0.18;_eAED=0.18;_QI=259|0.75|0.8|1|0.75|0.8|5|707|180 |
| Chr1 | exon | 86822468 | 86823067 | 86822468 | ID=MsG0180005090.01.T01:exon:14273;Parent=MsG0180005090.01.T01 |
| Chr1 | exon | 86823308 | 86823384 | 86823308 | ID=MsG0180005090.01.T01:exon:14272;Parent=MsG0180005090.01.T01 |
| Chr1 | exon | 86823497 | 86823799 | 86823497 | ID=MsG0180005090.01.T01:exon:14271;Parent=MsG0180005090.01.T01 |
| Chr1 | exon | 86824067 | 86824221 | 86824067 | ID=MsG0180005090.01.T01:exon:14270;Parent=MsG0180005090.01.T01 |
| Chr1 | exon | 86824340 | 86824713 | 86824340 | ID=MsG0180005090.01.T01:exon:14269;Parent=MsG0180005090.01.T01 |
| Chr1 | five_prime_UTR | 86824455 | 86824713 | 86824455 | ID=MsG0180005090.01.T01:five_prime_utr;Parent=MsG0180005090.01.T01 |
| Chr1 | CDS | 86824340 | 86824454 | 86824340 | ID=MsG0180005090.01.T01:cds;Parent=MsG0180005090.01.T01 |
| Chr1 | CDS | 86824067 | 86824221 | 86824067 | ID=MsG0180005090.01.T01:cds;Parent=MsG0180005090.01.T01 |
| Chr1 | CDS | 86823527 | 86823799 | 86823527 | ID=MsG0180005090.01.T01:cds;Parent=MsG0180005090.01.T01 |
| Chr1 | three_prime_UTR | 86823497 | 86823526 | 86823497 | ID=MsG0180005090.01.T01:three_prime_utr;Parent=MsG0180005090.01.T01 |
| Chr1 | three_prime_UTR | 86823308 | 86823384 | 86823308 | ID=MsG0180005090.01.T01:three_prime_utr;Parent=MsG0180005090.01.T01 |
| Chr1 | three_prime_UTR | 86822468 | 86823067 | 86822468 | ID=MsG0180005090.01.T01:three_prime_utr;Parent=MsG0180005090.01.T01 |
| Gene Sequence |
| Protein sequence |
