AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005195.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005195.01.T01 MTR_1g094870 98.391 373 6 0 75 447 57 429 0.0 752
MsG0180005195.01.T01 MTR_3g115980 54.233 378 170 2 75 450 54 430 1.34e-137 409
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005195.01.T01 AT2G01720 71.314 373 107 0 75 447 52 424 0.0 568
MsG0180005195.01.T01 AT1G76400 53.083 373 173 2 76 447 53 424 4.46e-133 395
MsG0180005195.01.T01 AT1G76400 53.083 373 173 2 76 447 53 424 9.34e-133 396

Find 129 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACCTCGTTATCCTCTATT+TGG 0.193369 1:+88304427 MsG0180005195.01.T01:CDS
GGGAAGGACTGTGGTGGTTT+TGG 0.209435 1:+88306127 MsG0180005195.01.T01:CDS
TATGGATGTTCTCTCCTTCT+TGG 0.240783 1:+88302018 MsG0180005195.01.T01:CDS
TCCACCTTTCTTCTTGGTTA+TGG 0.252341 1:+88304460 MsG0180005195.01.T01:CDS
TCTGAATTCTCACATAATTA+AGG 0.268406 1:+88301612 MsG0180005195.01.T01:CDS
GCTGGTACAGAGCTGAAATA+TGG 0.269457 1:+88302956 MsG0180005195.01.T01:CDS
GTATACTACCGGGATGAAAT+AGG 0.303864 1:+88303854 MsG0180005195.01.T01:CDS
TGGAAATCCACCTTTCTTCT+TGG 0.308439 1:+88304454 MsG0180005195.01.T01:CDS
TTTCTACCGGGAAAGGTTCC+AGG 0.313712 1:-88302790 None:intergenic
TATATCGCTCTGTGATTTGT+AGG 0.315214 1:-88303099 None:intergenic
ACATTCCCTGGAACCTTTCC+CGG 0.319281 1:+88302784 MsG0180005195.01.T01:CDS
ATGGCCATTCCTTGGGGCAG+GGG 0.330290 1:+88302149 MsG0180005195.01.T01:CDS
TGAGCATAACATCCCTTTCC+AGG 0.345316 1:+88306169 MsG0180005195.01.T01:CDS
AGATACCTCAACTTTACTTA+TGG 0.346751 1:+88304526 MsG0180005195.01.T01:CDS
TGAAATTGAAATATCTCATT+GGG 0.353686 1:+88303072 MsG0180005195.01.T01:CDS
AATCACGGCTGCAGGATCTT+TGG 0.357139 1:-88304700 None:intergenic
GAATGGAATGGCCATTCCTT+GGG 0.359484 1:+88302142 MsG0180005195.01.T01:CDS
CTCAAAGCTGCCGCAACTAC+TGG 0.360824 1:+88302611 MsG0180005195.01.T01:CDS
TGCCATCTGGAGACTCAAAA+AGG 0.375711 1:-88304501 None:intergenic
AGTGGAGTTAACAAGGTTAC+AGG 0.382914 1:-88302716 None:intergenic
TTAGATCCATTTGGTCCATC+AGG 0.392359 1:-88302686 None:intergenic
TTACATATTAACACATTCCC+TGG 0.402653 1:+88302772 MsG0180005195.01.T01:CDS
AACAATTCATTCAGTGTGTA+AGG 0.405206 1:+88301987 MsG0180005195.01.T01:intron
GAATGGCCATTCCTTGGGGC+AGG 0.416117 1:+88302147 MsG0180005195.01.T01:CDS
TACGGTGTCTTCTCGTCATA+TGG 0.418697 1:-88302980 None:intergenic
GTGAAATTGAAATATCTCAT+TGG 0.418999 1:+88303071 MsG0180005195.01.T01:CDS
GGAATGGAATGGCCATTCCT+TGG 0.421051 1:+88302141 MsG0180005195.01.T01:CDS
CTCTGTACCAGCACGTTTAG+TGG 0.422155 1:-88302945 None:intergenic
TTGAGGTATCTTCTGCCATC+TGG 0.422948 1:-88304514 None:intergenic
TTTGAGTACTGCTAGATGTT+CGG 0.425836 1:-88302594 None:intergenic
GTGGAGATTCTTTGTCTGTA+TGG 0.426826 1:+88302046 MsG0180005195.01.T01:CDS
AAACCAACTTTATAAAAGCT+TGG 0.427960 1:-88306204 None:intergenic
GCAGGATCTTTGGACCCCTC+TGG 0.431295 1:-88304690 None:intergenic
TGTTTGTTGCTTGACATGAT+AGG 0.435117 1:-88302870 None:intergenic
AGATGTTGATCTACTTGAAA+AGG 0.459409 1:-88304723 None:intergenic
GTTATCCTCTATTTGGAGGC+TGG 0.471021 1:+88304434 MsG0180005195.01.T01:CDS
GTTGAATATCAAACTAGATC+AGG 0.471474 1:+88303770 MsG0180005195.01.T01:CDS
CCTCGTTATCCTCTATTTGG+AGG 0.482442 1:+88304430 MsG0180005195.01.T01:CDS
AGCTCCTCAACAACGGCAAA+GGG 0.482451 1:-88303043 None:intergenic
TGAAAAGGAATCACGGCTGC+AGG 0.482684 1:-88304708 None:intergenic
TGACTTATTTCTACCGGGAA+AGG 0.493316 1:-88302797 None:intergenic
TGGTTGCCCTCTTGCTCAGA+CGG 0.493408 1:+88304546 MsG0180005195.01.T01:CDS
TCTCTCCTTCTTGGAGGACG+TGG 0.494147 1:+88302027 MsG0180005195.01.T01:CDS
TCTGATTGACTTATTTCTAC+CGG 0.494339 1:-88302803 None:intergenic
ATTTAGGTTGTGCTTCCAGA+GGG 0.499415 1:+88304675 MsG0180005195.01.T01:intron
CTGATTGACTTATTTCTACC+GGG 0.500739 1:-88302802 None:intergenic
GGATGTTCTCTCCTTCTTGG+AGG 0.501117 1:+88302021 MsG0180005195.01.T01:CDS
TTCTCAAAATGAACAAGTAC+AGG 0.504398 1:-88303013 None:intergenic
CTCTTCCTACAGAGTTGGAA+TGG 0.506872 1:+88302125 MsG0180005195.01.T01:CDS
AATGGCCATTCCTTGGGGCA+GGG 0.507068 1:+88302148 MsG0180005195.01.T01:CDS
ACTTTATAAAAGCTTGGACT+TGG 0.510826 1:-88306198 None:intergenic
CATTAAGACACCAACCGCTC+GGG 0.513282 1:+88302898 MsG0180005195.01.T01:CDS
CAATCCCTTTGCCGTTGTTG+AGG 0.515385 1:+88303039 MsG0180005195.01.T01:CDS
TATTCATACCTTGACATTGT+GGG 0.517201 1:+88306107 MsG0180005195.01.T01:CDS
GGGTTCACTCAGTATACTAC+CGG 0.517261 1:+88303843 MsG0180005195.01.T01:CDS
GAAAACTCTTCCTACAGAGT+TGG 0.519052 1:+88302120 MsG0180005195.01.T01:CDS
CTGGTACAGAGCTGAAATAT+GGG 0.519780 1:+88302957 MsG0180005195.01.T01:CDS
GCTAGATGTTCGGCTTCAGC+AGG 0.521174 1:-88302584 None:intergenic
GATTTCCAGCCTCCAAATAG+AGG 0.522219 1:-88304439 None:intergenic
GCTTGGACTTGGTTGATACC+TGG 0.522245 1:-88306187 None:intergenic
TCATTAAGACACCAACCGCT+CGG 0.522354 1:+88302897 MsG0180005195.01.T01:CDS
GCAAGATGTACTTCTGAAGC+AGG 0.523168 1:-88302554 None:intergenic
GAGATACCTGATGGACCAAA+TGG 0.524355 1:+88302680 MsG0180005195.01.T01:CDS
CGATATAAGCTGGTTCATGC+TGG 0.524532 1:+88303115 MsG0180005195.01.T01:CDS
GTGTGTAAGGAATGTATGTA+TGG 0.524565 1:+88302000 MsG0180005195.01.T01:intron
TAGTATACTGAGTGAACCCT+AGG 0.526754 1:-88303839 None:intergenic
TAGCTCCTCAACAACGGCAA+AGG 0.528305 1:-88303044 None:intergenic
TCTGCCCCTGCCCCAAGGAA+TGG 0.534362 1:-88302153 None:intergenic
TAAGGTGTACTTGACATTGA+AGG 0.534892 1:+88301630 MsG0180005195.01.T01:CDS
TCAAAGCTGCCGCAACTACT+GGG 0.536844 1:+88302612 MsG0180005195.01.T01:CDS
CTGCCGCAACTACTGGGAAG+AGG 0.550801 1:+88302618 MsG0180005195.01.T01:CDS
CTTCCTCTTCCCAGTAGTTG+CGG 0.552669 1:-88302621 None:intergenic
TCTGTACCAGCACGTTTAGT+GGG 0.557172 1:-88302944 None:intergenic
TTGTTAACTCCACTGAGTAA+AGG 0.559974 1:+88302725 MsG0180005195.01.T01:CDS
TTCTACCGGGAAAGGTTCCA+GGG 0.561417 1:-88302789 None:intergenic
GACTTGGTTGATACCTGGAA+AGG 0.563754 1:-88306182 None:intergenic
AATCACAGAGCGATATAAGC+TGG 0.566072 1:+88303105 MsG0180005195.01.T01:CDS
TTGTCTGTATGGAGTGGAGA+TGG 0.566400 1:+88302057 MsG0180005195.01.T01:CDS
GTTTGTTGCTTGACATGATA+GGG 0.568188 1:-88302869 None:intergenic
TCAACCACCGTCTGAGCAAG+AGG 0.568747 1:-88304553 None:intergenic
TTTACTCAGTGGAGTTAACA+AGG 0.569462 1:-88302723 None:intergenic
AATCTCCACGTCCTCCAAGA+AGG 0.569868 1:-88302032 None:intergenic
AGTACAGGAGAATATGAATA+CGG 0.571755 1:-88302998 None:intergenic
CCATTCCATTCCAACTCTGT+AGG 0.575659 1:-88302130 None:intergenic
CAAACTAGATCAGGTGCTAG+TGG 0.578545 1:+88303779 MsG0180005195.01.T01:CDS
TGGAAAGGGATGTTATGCTC+AGG 0.578762 1:-88306167 None:intergenic
GGTAGAATCATTCACAGTAG+TGG 0.581802 1:+88302919 MsG0180005195.01.T01:CDS
TAGTCCATAACCAAGAAGAA+AGG 0.583269 1:-88304464 None:intergenic
ACAATAATATTGCACTATCA+CGG 0.583872 1:-88302844 None:intergenic
ATCTACTTGAAAAGGAATCA+CGG 0.585368 1:-88304715 None:intergenic
CCTACAGAGTTGGAATGGAA+TGG 0.585836 1:+88302130 MsG0180005195.01.T01:CDS
TCAGCAGATTTAACATCAAG+CGG 0.586004 1:-88302659 None:intergenic
AAATCTGCTGAGATACCTGA+TGG 0.587325 1:+88302671 MsG0180005195.01.T01:CDS
AATATTCTGCCCCTGCCCCA+AGG 0.587544 1:-88302158 None:intergenic
ACTCAGTAGAAAACAAGGCA+TGG 0.587957 1:-88302095 None:intergenic
TTGCCCTCTTGCTCAGACGG+TGG 0.588234 1:+88304549 MsG0180005195.01.T01:CDS
TCCATAACCAAGAAGAAAGG+TGG 0.588608 1:-88304461 None:intergenic
AGGTGGAACGACAACAATTG+AGG 0.589363 1:+88302745 MsG0180005195.01.T01:CDS
TCAAGTAGATCAACATCTAG+AGG 0.590429 1:+88304728 MsG0180005195.01.T01:CDS
GGCAACCATAAGTAAAGTTG+AGG 0.597837 1:-88304531 None:intergenic
TTCTTACTCAGTAGAAAACA+AGG 0.598257 1:-88302100 None:intergenic
GTATTCATACCTTGACATTG+TGG 0.600934 1:+88306106 MsG0180005195.01.T01:CDS
GTGGAGCCCACTAAACGTGC+TGG 0.602947 1:+88302938 MsG0180005195.01.T01:CDS
CATTGTGGGAAGGACTGTGG+TGG 0.603609 1:+88306121 MsG0180005195.01.T01:CDS
ACTTGGTTGATACCTGGAAA+GGG 0.606641 1:-88306181 None:intergenic
GTCGTTCCACCTTTACTCAG+TGG 0.609526 1:-88302734 None:intergenic
TTAACTCCACTGAGTAAAGG+TGG 0.613315 1:+88302728 MsG0180005195.01.T01:CDS
AATTTAGGTTGTGCTTCCAG+AGG 0.613788 1:+88304674 MsG0180005195.01.T01:intron
AAATATTGCCTATTTCATCC+CGG 0.619277 1:-88303862 None:intergenic
AGTATACTGAGTGAACCCTA+GGG 0.619575 1:-88303838 None:intergenic
AATGGAATGGCCATTCCTTG+GGG 0.623398 1:+88302143 MsG0180005195.01.T01:CDS
AATGATTCTACCCGAGCGGT+TGG 0.624218 1:-88302908 None:intergenic
AAGTCAATCAGAGTCGCAGT+TGG 0.629557 1:+88302814 MsG0180005195.01.T01:CDS
CATGCTGGTGCTAGACACAA+AGG 0.634853 1:+88303130 MsG0180005195.01.T01:CDS
CAGTCCTTCCCACAATGTCA+AGG 0.636145 1:-88306115 None:intergenic
ACGTTCTAGCTCCTCAACAA+CGG 0.642984 1:-88303050 None:intergenic
GTGGAGTTAACAAGGTTACA+GGG 0.646599 1:-88302715 None:intergenic
TTTAGGTTGTGCTTCCAGAG+GGG 0.651533 1:+88304676 MsG0180005195.01.T01:intron
GATTCTTTGTCTGTATGGAG+TGG 0.651940 1:+88302051 MsG0180005195.01.T01:CDS
CAACCACCGTCTGAGCAAGA+GGG 0.657316 1:-88304552 None:intergenic
CATACCTTGACATTGTGGGA+AGG 0.658291 1:+88306111 MsG0180005195.01.T01:CDS
TGTATGGAGTGGAGATGGAG+AGG 0.668202 1:+88302062 MsG0180005195.01.T01:CDS
CCTCCAAATAGAGGATAACG+AGG 0.679066 1:-88304430 None:intergenic
GAAATTGAAATATCTCATTG+GGG 0.680457 1:+88303073 MsG0180005195.01.T01:CDS
GGTTCACTCAGTATACTACC+GGG 0.708588 1:+88303844 MsG0180005195.01.T01:CDS
TGTGAATGATTCTACCCGAG+CGG 0.716578 1:-88302912 None:intergenic
TGACATTGTGGGAAGGACTG+TGG 0.720812 1:+88306118 MsG0180005195.01.T01:CDS
GTATACTGAGTGAACCCTAG+GGG 0.721984 1:-88303837 None:intergenic
TATACTGAGTGAACCCTAGG+GGG 0.733345 1:-88303836 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAAAAAAAAAAATTGA+TGG + Chr1:88301873-88301892 MsG0180005195.01.T01:intron 10.0%
!! AAATTAATTGTAAAATATTC+AGG + Chr1:88305196-88305215 MsG0180005195.01.T01:intron 10.0%
!!! AAACACTTTTAATATTTTTT+AGG + Chr1:88305606-88305625 MsG0180005195.01.T01:intron 10.0%
!!! ATATTTTACAATTAATTTGA+AGG - Chr1:88305194-88305213 None:intergenic 10.0%
!!! TATTTTACAATTAATTTGAA+GGG - Chr1:88305193-88305212 None:intergenic 10.0%
!!! TTTTTTCTTTTGTAATAAAT+TGG - Chr1:88301864-88301883 None:intergenic 10.0%
!! AAATATCTATCTGTAAAATT+AGG + Chr1:88301760-88301779 MsG0180005195.01.T01:intron 15.0%
!! TAAACATATATAACATGAAA+GGG + Chr1:88302206-88302225 MsG0180005195.01.T01:intron 15.0%
!!! ATATTTTCTTTTTCTTTTCT+GGG + Chr1:88305984-88306003 MsG0180005195.01.T01:intron 15.0%
!!! CTTTTTGAATCATTTAATTT+AGG + Chr1:88304659-88304678 MsG0180005195.01.T01:intron 15.0%
!!! TAGTTTTATTAGATTCAAAT+TGG - Chr1:88301925-88301944 None:intergenic 15.0%
!!! TATATTTTCTTTTTCTTTTC+TGG + Chr1:88305983-88306002 MsG0180005195.01.T01:intron 15.0%
!!! TGTAATCTTTATTTGATTTA+TGG + Chr1:88304111-88304130 MsG0180005195.01.T01:intron 15.0%
!!! TTAATTTGTAATCTTTGATT+GGG + Chr1:88305922-88305941 MsG0180005195.01.T01:intron 15.0%
!!! TTCTTTTATCATGTATAATT+GGG + Chr1:88303729-88303748 MsG0180005195.01.T01:intron 15.0%
!!! TTTCTTTTATCATGTATAAT+TGG + Chr1:88303728-88303747 MsG0180005195.01.T01:intron 15.0%
!! AAGAAAAAGAAAATATATCG+CGG - Chr1:88305980-88305999 None:intergenic 20.0%
!! ACAATTCAATCAACTTTATT+AGG + Chr1:88302236-88302255 MsG0180005195.01.T01:intron 20.0%
!! AGAATATATAAGCTTATACT+TGG - Chr1:88304950-88304969 None:intergenic 20.0%
!! AGTTAAGGTTAATAAAACAT+TGG + Chr1:88303623-88303642 MsG0180005195.01.T01:intron 20.0%
!! ATATTAGAATCTGGAAAAAA+AGG + Chr1:88305693-88305712 MsG0180005195.01.T01:intron 20.0%
!! CAATTCAATCAACTTTATTA+GGG + Chr1:88302237-88302256 MsG0180005195.01.T01:intron 20.0%
!! CATGTTATATATGTTTAGTT+TGG - Chr1:88302203-88302222 None:intergenic 20.0%
!! CTAAACATATATAACATGAA+AGG + Chr1:88302205-88302224 MsG0180005195.01.T01:intron 20.0%
!! CTAAATTTAAGAGAAAAGTT+TGG - Chr1:88302423-88302442 None:intergenic 20.0%
!! TAAAACATCTACTACAATTA+GGG + Chr1:88302478-88302497 MsG0180005195.01.T01:intron 20.0%
!! TAGCAAATAAATATATCGAA+AGG - Chr1:88303335-88303354 None:intergenic 20.0%
!! TAGTCAAAACTAAATATCTT+GGG - Chr1:88305379-88305398 None:intergenic 20.0%
!! TATTGAGAAAAGATAAAAAG+TGG + Chr1:88305894-88305913 MsG0180005195.01.T01:intron 20.0%
!! TGAAATTGAAATATCTCATT+GGG + Chr1:88303072-88303091 MsG0180005195.01.T01:CDS 20.0%
!! TGTAAAATTAGGATTGAATT+GGG + Chr1:88301771-88301790 MsG0180005195.01.T01:intron 20.0%
!! TTAAAACATCTACTACAATT+AGG + Chr1:88302477-88302496 MsG0180005195.01.T01:intron 20.0%
!! TTAGTTATTACTCTTGTATT+AGG + Chr1:88303541-88303560 MsG0180005195.01.T01:intron 20.0%
!! TTATCAGTGTTTAAATGAAA+GGG + Chr1:88304825-88304844 MsG0180005195.01.T01:intron 20.0%
!! TTTATCAGTGTTTAAATGAA+AGG + Chr1:88304824-88304843 MsG0180005195.01.T01:intron 20.0%
!!! ATGTTAATGAAATGTTTTGA+GGG + Chr1:88304239-88304258 MsG0180005195.01.T01:intron 20.0%
!!! CATTTTTCTCTTTCATTATT+AGG - Chr1:88305023-88305042 None:intergenic 20.0%
!!! GTTAATTTGTAATCTTTGAT+TGG + Chr1:88305921-88305940 MsG0180005195.01.T01:intron 20.0%
!!! TAATTTGTAATCTTTGATTG+GGG + Chr1:88305923-88305942 MsG0180005195.01.T01:intron 20.0%
!!! TATGTTAATGAAATGTTTTG+AGG + Chr1:88304238-88304257 MsG0180005195.01.T01:intron 20.0%
!!! TCTTTTATCATGTATAATTG+GGG + Chr1:88303730-88303749 MsG0180005195.01.T01:intron 20.0%
! AAAGGTGAGATATATCATTT+GGG + Chr1:88303913-88303932 MsG0180005195.01.T01:intron 25.0%
! AAAGTAGTTAATAGCAGAAA+AGG + Chr1:88303492-88303511 MsG0180005195.01.T01:intron 25.0%
! AAATAAATATATCGAAAGGC+GGG - Chr1:88303331-88303350 None:intergenic 25.0%
! ACAAGAGTAATAACTAAAAC+TGG - Chr1:88303538-88303557 None:intergenic 25.0%
! ACAATAATATTGCACTATCA+CGG - Chr1:88302847-88302866 None:intergenic 25.0%
! CAAATAAATATATCGAAAGG+CGG - Chr1:88303332-88303351 None:intergenic 25.0%
! CTAGTCAAAACTAAATATCT+TGG - Chr1:88305380-88305399 None:intergenic 25.0%
! CTGTAAAATTAGGATTGAAT+TGG + Chr1:88301770-88301789 MsG0180005195.01.T01:intron 25.0%
! GAAATTGAAATATCTCATTG+GGG + Chr1:88303073-88303092 MsG0180005195.01.T01:CDS 25.0%
! GTGAAATTGAAATATCTCAT+TGG + Chr1:88303071-88303090 MsG0180005195.01.T01:CDS 25.0%
! TAAAGGTGAGATATATCATT+TGG + Chr1:88303912-88303931 MsG0180005195.01.T01:intron 25.0%
! TAAGTAACTTCGTTAGTTAT+AGG - Chr1:88301957-88301976 None:intergenic 25.0%
! TATTGTTGTATACCATTTCT+TGG - Chr1:88305815-88305834 None:intergenic 25.0%
! TCTGAATTCTCACATAATTA+AGG + Chr1:88301612-88301631 MsG0180005195.01.T01:CDS 25.0%
! TTCTTGGAAATATTAGAATC+TGG + Chr1:88305684-88305703 MsG0180005195.01.T01:intron 25.0%
! TTTCTCTTTCATTATTAGGA+GGG - Chr1:88305019-88305038 None:intergenic 25.0%
!! ATATTTATTTGCTAGTTGTG+TGG + Chr1:88303341-88303360 MsG0180005195.01.T01:intron 25.0%
!! ATCTTTTCTCAATAGATAGT+TGG - Chr1:88305888-88305907 None:intergenic 25.0%
!! CAACAAATCAGTATTTGTTT+TGG + Chr1:88302397-88302416 MsG0180005195.01.T01:intron 25.0%
!! GTCACATTTTATATTCCTAA+AGG + Chr1:88305131-88305150 MsG0180005195.01.T01:intron 25.0%
!! TACAACAATATTAGTTTGAG+AGG + Chr1:88305825-88305844 MsG0180005195.01.T01:intron 25.0%
!! TGCATCAAATTACTATTTCT+AGG + Chr1:88305456-88305475 MsG0180005195.01.T01:intron 25.0%
!! TTTTCATGAGGAATAATCTT+AGG - Chr1:88305501-88305520 None:intergenic 25.0%
!! TTTTCTCCCTTTTTTCTTTT+GGG + Chr1:88304042-88304061 MsG0180005195.01.T01:intron 25.0%
!! TTTTCTCTTTCATTATTAGG+AGG - Chr1:88305020-88305039 None:intergenic 25.0%
!! TTTTTCTCCCTTTTTTCTTT+TGG + Chr1:88304041-88304060 MsG0180005195.01.T01:intron 25.0%
!!! CAAAACAAATACTGATTTGT+TGG - Chr1:88302399-88302418 None:intergenic 25.0%
!!! CTAGAGGTAATGATTTTTTT+AGG + Chr1:88304744-88304763 MsG0180005195.01.T01:intron 25.0%
!!! GACAAGTTGATTATAAAAGT+GGG + Chr1:88304574-88304593 MsG0180005195.01.T01:intron 25.0%
!!! TAATCTTTAGAAAGTGCTAT+TGG - Chr1:88304069-88304088 None:intergenic 25.0%
!!! TAGTTGGAGTTTTAGATATT+TGG + Chr1:88303297-88303316 MsG0180005195.01.T01:intron 25.0%
!!! TGACAAGTTGATTATAAAAG+TGG + Chr1:88304573-88304592 MsG0180005195.01.T01:intron 25.0%
!!! TGTTAATGAAATGTTTTGAG+GGG + Chr1:88304240-88304259 MsG0180005195.01.T01:intron 25.0%
AAATATTGCCTATTTCATCC+CGG - Chr1:88303865-88303884 None:intergenic 30.0%
AACAATTCATTCAGTGTGTA+AGG + Chr1:88301987-88302006 MsG0180005195.01.T01:intron 30.0%
AACTTGGAATGAAACATGTA+GGG + Chr1:88303427-88303446 MsG0180005195.01.T01:intron 30.0%
AAGGTGAGATATATCATTTG+GGG + Chr1:88303914-88303933 MsG0180005195.01.T01:intron 30.0%
AAGTTTCTATGACATCTCTT+CGG - Chr1:88305164-88305183 None:intergenic 30.0%
AATAAATATATCGAAAGGCG+GGG - Chr1:88303330-88303349 None:intergenic 30.0%
AATTTGTGCAGTTGAAACAA+AGG - Chr1:88304793-88304812 None:intergenic 30.0%
AGATACCTCAACTTTACTTA+TGG + Chr1:88304526-88304545 MsG0180005195.01.T01:CDS 30.0%
AGATCAGCATTACCATATTA+AGG - Chr1:88305554-88305573 None:intergenic 30.0%
AGATGTTGATCTACTTGAAA+AGG - Chr1:88304726-88304745 None:intergenic 30.0%
AGGGAGAAAAAGAAAAGAAA+AGG - Chr1:88304032-88304051 None:intergenic 30.0%
AGTAAAATCTGCGATTAAAG+TGG + Chr1:88306056-88306075 MsG0180005195.01.T01:intron 30.0%
AGTACAGGAGAATATGAATA+CGG - Chr1:88303001-88303020 None:intergenic 30.0%
ATCTACTTGAAAAGGAATCA+CGG - Chr1:88304718-88304737 None:intergenic 30.0%
ATTATTGCATGCAAAACCAA+AGG - Chr1:88304624-88304643 None:intergenic 30.0%
ATTGGTCCCAAAAGAAAAAA+GGG - Chr1:88304051-88304070 None:intergenic 30.0%
CAAAGAACAAAATGAAGGTA+TGG - Chr1:88303205-88303224 None:intergenic 30.0%
CTGTGTATTAACGTATTTGT+TGG + Chr1:88305287-88305306 MsG0180005195.01.T01:intron 30.0%
GGGAAAAATTTAGATCCATT+TGG - Chr1:88302698-88302717 None:intergenic 30.0%
GTTGAATATCAAACTAGATC+AGG + Chr1:88303770-88303789 MsG0180005195.01.T01:CDS 30.0%
GTTTACGAAGTTCAATAAAC+TGG - Chr1:88302377-88302396 None:intergenic 30.0%
TATTCATACCTTGACATTGT+GGG + Chr1:88306107-88306126 MsG0180005195.01.T01:CDS 30.0%
TATTGGTCCCAAAAGAAAAA+AGG - Chr1:88304052-88304071 None:intergenic 30.0%
TTACATATTAACACATTCCC+TGG + Chr1:88302772-88302791 MsG0180005195.01.T01:CDS 30.0%
TTATTGCATGCAAAACCAAA+GGG - Chr1:88304623-88304642 None:intergenic 30.0%
TTCACAGTTTCACTAACAAA+TGG - Chr1:88305322-88305341 None:intergenic 30.0%
TTCCTCAAAGAACAAAATGA+AGG - Chr1:88303210-88303229 None:intergenic 30.0%
TTCTCAAAATGAACAAGTAC+AGG - Chr1:88303016-88303035 None:intergenic 30.0%
TTCTCTTTCATTATTAGGAG+GGG - Chr1:88305018-88305037 None:intergenic 30.0%
TTCTTACTCAGTAGAAAACA+AGG - Chr1:88302103-88302122 None:intergenic 30.0%
TTTATTAACCTTAACTCAGC+TGG - Chr1:88303619-88303638 None:intergenic 30.0%
TTTCATAGAGCTTTCATTTC+AGG + Chr1:88302511-88302530 MsG0180005195.01.T01:intron 30.0%
! AAAGAAGTATGACATCAGAA+AGG - Chr1:88304373-88304392 None:intergenic 30.0%
! AAGTAACCTTTTCATGATAG+TGG + Chr1:88305102-88305121 MsG0180005195.01.T01:intron 30.0%
! AGTAACCTTTTCATGATAGT+GGG + Chr1:88305103-88305122 MsG0180005195.01.T01:intron 30.0%
! ATAGCACTTTTGAACAAAGT+TGG + Chr1:88301826-88301845 MsG0180005195.01.T01:intron 30.0%
! CATAGAAATGCATTTTCATG+AGG - Chr1:88305513-88305532 None:intergenic 30.0%
! GCATTTCTCTTTGTTTAATG+AGG + Chr1:88304919-88304938 MsG0180005195.01.T01:intron 30.0%
! TACCTTCATTTTGTTCTTTG+AGG + Chr1:88303205-88303224 MsG0180005195.01.T01:intron 30.0%
! TAGCACTTTTGAACAAAGTT+GGG + Chr1:88301827-88301846 MsG0180005195.01.T01:intron 30.0%
! TCAAAAAGGAAGTCTTGTAA+TGG - Chr1:88304490-88304509 None:intergenic 30.0%
! TCTGTTTTATGTCCAAGAAA+TGG + Chr1:88305800-88305819 MsG0180005195.01.T01:intron 30.0%
! TTCTCTTTGTTTAATGAGGA+GGG + Chr1:88304923-88304942 MsG0180005195.01.T01:intron 30.0%
! TTTACGCACAGATTTTCTAA+AGG + Chr1:88303895-88303914 MsG0180005195.01.T01:CDS 30.0%
! TTTCTCTTTGTTTAATGAGG+AGG + Chr1:88304922-88304941 MsG0180005195.01.T01:intron 30.0%
!! AAGGCATTCTGATTACTTTT+AGG + Chr1:88305712-88305731 MsG0180005195.01.T01:intron 30.0%
!! CTGCTTTTGAAAATCAAAAG+TGG + Chr1:88305765-88305784 MsG0180005195.01.T01:intron 30.0%
!! TCTGATTGACTTATTTCTAC+CGG - Chr1:88302806-88302825 None:intergenic 30.0%
!! TTTGACTTAAGCTTTTCCAA+TGG + Chr1:88303592-88303611 MsG0180005195.01.T01:intron 30.0%
!!! TTGGAGTTTTAGATATTTGG+CGG + Chr1:88303300-88303319 MsG0180005195.01.T01:intron 30.0%
!!! TTTGGTTTTGCATGCAATAA+TGG + Chr1:88304623-88304642 MsG0180005195.01.T01:intron 30.0%
AAAAGCTTAAGTCAAAGCCT+AGG - Chr1:88303588-88303607 None:intergenic 35.0%
AAAAGGAAGGACAATAGTCT+TGG + Chr1:88304293-88304312 MsG0180005195.01.T01:intron 35.0%
AATTGTGCTTCATTGCAACT+TGG + Chr1:88303411-88303430 MsG0180005195.01.T01:intron 35.0%
AGGGATTGATCAAACTTAGA+TGG + Chr1:88304858-88304877 MsG0180005195.01.T01:intron 35.0%
AGTTTCTATGACATCTCTTC+GGG - Chr1:88305163-88305182 None:intergenic 35.0%
CAACTTGGAATGAAACATGT+AGG + Chr1:88303426-88303445 MsG0180005195.01.T01:intron 35.0%
CAGCATTACCATATTAAGGA+CGG - Chr1:88305550-88305569 None:intergenic 35.0%
CTAAAACTCCAACTACTTCA+AGG - Chr1:88303292-88303311 None:intergenic 35.0%
GAAAATATATCGCGGAAATC+TGG - Chr1:88305972-88305991 None:intergenic 35.0%
GAGGGGAAAAATGAAAGATA+TGG - Chr1:88305001-88305020 None:intergenic 35.0%
GATTTCTTGTAGTTTCTGCA+TGG + Chr1:88304207-88304226 MsG0180005195.01.T01:intron 35.0%
GTATTAGGACTGTCATGATT+TGG + Chr1:88303556-88303575 MsG0180005195.01.T01:intron 35.0%
GTATTCATACCTTGACATTG+TGG + Chr1:88306106-88306125 MsG0180005195.01.T01:CDS 35.0%
GTGTGTAAGGAATGTATGTA+TGG + Chr1:88302000-88302019 MsG0180005195.01.T01:intron 35.0%
TAAGGTGTACTTGACATTGA+AGG + Chr1:88301630-88301649 MsG0180005195.01.T01:CDS 35.0%
TAGTCCATAACCAAGAAGAA+AGG - Chr1:88304467-88304486 None:intergenic 35.0%
TCAAGTAGATCAACATCTAG+AGG + Chr1:88304728-88304747 MsG0180005195.01.T01:CDS 35.0%
TCAGCAGATTTAACATCAAG+CGG - Chr1:88302662-88302681 None:intergenic 35.0%
TGAAACCCACTATCATGAAA+AGG - Chr1:88305111-88305130 None:intergenic 35.0%
TGAAAGATATGGTGACTACT+TGG - Chr1:88304990-88305009 None:intergenic 35.0%
TGAACGACTAAACTAAAGTC+AGG - Chr1:88303973-88303992 None:intergenic 35.0%
TTGTTAACTCCACTGAGTAA+AGG + Chr1:88302725-88302744 MsG0180005195.01.T01:CDS 35.0%
TTTACTCAGTGGAGTTAACA+AGG - Chr1:88302726-88302745 None:intergenic 35.0%
! AAGACTATTGTCCTTCCTTT+TGG - Chr1:88304294-88304313 None:intergenic 35.0%
! ATGTAGGGTTTTGCAACATT+TGG + Chr1:88303442-88303461 MsG0180005195.01.T01:intron 35.0%
! ATGTCTTGTTGAAGACTTCT+TGG + Chr1:88305668-88305687 MsG0180005195.01.T01:intron 35.0%
! ATTTCTAGGTAGCTGCAAAA+GGG + Chr1:88305470-88305489 MsG0180005195.01.T01:intron 35.0%
! CTAGTTTAGAGTTCACCAAA+AGG + Chr1:88304276-88304295 MsG0180005195.01.T01:intron 35.0%
! GTTTGTTGCTTGACATGATA+GGG - Chr1:88302872-88302891 None:intergenic 35.0%
! TATATCGCTCTGTGATTTGT+AGG - Chr1:88303102-88303121 None:intergenic 35.0%
! TCAGGATATGACCATCTTTT+TGG + Chr1:88305214-88305233 MsG0180005195.01.T01:intron 35.0%
! TGTTTGTTGCTTGACATGAT+AGG - Chr1:88302873-88302892 None:intergenic 35.0%
! TTTAGAGTTCACCAAAAGGA+AGG + Chr1:88304280-88304299 MsG0180005195.01.T01:intron 35.0%
! TTTGAGTACTGCTAGATGTT+CGG - Chr1:88302597-88302616 None:intergenic 35.0%
!! AATGAAAGGGAAGTGTTTAG+AGG + Chr1:88304838-88304857 MsG0180005195.01.T01:intron 35.0%
!! ACGTGAGAAAAGCACAATTT+TGG + Chr1:88302285-88302304 MsG0180005195.01.T01:intron 35.0%
!! ATGAAAGGGAAGTGTTTAGA+GGG + Chr1:88304839-88304858 MsG0180005195.01.T01:intron 35.0%
!! CGTGAGAAAAGCACAATTTT+GGG + Chr1:88302286-88302305 MsG0180005195.01.T01:intron 35.0%
!! CTGATTGACTTATTTCTACC+GGG - Chr1:88302805-88302824 None:intergenic 35.0%
!! GTGAGAAAAGCACAATTTTG+GGG + Chr1:88302287-88302306 MsG0180005195.01.T01:intron 35.0%
!! TATTTCTAGGTAGCTGCAAA+AGG + Chr1:88305469-88305488 MsG0180005195.01.T01:intron 35.0%
!! TCATTTCAGGTTGAAAACTC+AGG + Chr1:88302524-88302543 MsG0180005195.01.T01:intron 35.0%
!! TGAGAAAAGCACAATTTTGG+GGG + Chr1:88302288-88302307 MsG0180005195.01.T01:intron 35.0%
!! TTCCGTACATCTGCTTTTAT+CGG - Chr1:88304182-88304201 None:intergenic 35.0%
!!! ATGACCATCTTTTTGGCTTA+TGG + Chr1:88305221-88305240 MsG0180005195.01.T01:intron 35.0%
!!! GACACAAAGGTGTTTTTTCA+AGG + Chr1:88303143-88303162 MsG0180005195.01.T01:CDS 35.0%
!!! TGACCATCTTTTTGGCTTAT+GGG + Chr1:88305222-88305241 MsG0180005195.01.T01:intron 35.0%
AAATCTGCTGAGATACCTGA+TGG + Chr1:88302671-88302690 MsG0180005195.01.T01:CDS 40.0%
AATCACAGAGCGATATAAGC+TGG + Chr1:88303105-88303124 MsG0180005195.01.T01:CDS 40.0%
ACGACTAAACTAAAGTCAGG+TGG - Chr1:88303970-88303989 None:intergenic 40.0%
ACTCAGTAGAAAACAAGGCA+TGG - Chr1:88302098-88302117 None:intergenic 40.0%
AGCCGATAAAAGCAGATGTA+CGG + Chr1:88304177-88304196 MsG0180005195.01.T01:intron 40.0%
AGTATACTGAGTGAACCCTA+GGG - Chr1:88303841-88303860 None:intergenic 40.0%
AGTGAAACTGTGAAAGAACC+TGG + Chr1:88305328-88305347 MsG0180005195.01.T01:intron 40.0%
AGTGGAGTTAACAAGGTTAC+AGG - Chr1:88302719-88302738 None:intergenic 40.0%
CACGTACTCAGTCATATACT+TGG - Chr1:88302270-88302289 None:intergenic 40.0%
CATTGTAGCCGTCCTTAATA+TGG + Chr1:88305539-88305558 MsG0180005195.01.T01:intron 40.0%
CGACTAAACTAAAGTCAGGT+GGG - Chr1:88303969-88303988 None:intergenic 40.0%
CTGGTACAGAGCTGAAATAT+GGG + Chr1:88302957-88302976 MsG0180005195.01.T01:CDS 40.0%
GAAAACTCTTCCTACAGAGT+TGG + Chr1:88302120-88302139 MsG0180005195.01.T01:CDS 40.0%
GAACCTCGTTATCCTCTATT+TGG + Chr1:88304427-88304446 MsG0180005195.01.T01:CDS 40.0%
GATTCTTTGTCTGTATGGAG+TGG + Chr1:88302051-88302070 MsG0180005195.01.T01:CDS 40.0%
GATTTATGGCTGTGTACTGT+TGG + Chr1:88304125-88304144 MsG0180005195.01.T01:intron 40.0%
GGCAACCATAAGTAAAGTTG+AGG - Chr1:88304534-88304553 None:intergenic 40.0%
GGTAGAATCATTCACAGTAG+TGG + Chr1:88302919-88302938 MsG0180005195.01.T01:CDS 40.0%
GGTCAACACAGTCAATTGTT+AGG + Chr1:88305351-88305370 MsG0180005195.01.T01:intron 40.0%
GTATACTACCGGGATGAAAT+AGG + Chr1:88303854-88303873 MsG0180005195.01.T01:CDS 40.0%
GTGAAACTGTGAAAGAACCT+GGG + Chr1:88305329-88305348 MsG0180005195.01.T01:intron 40.0%
GTGGAGATTCTTTGTCTGTA+TGG + Chr1:88302046-88302065 MsG0180005195.01.T01:CDS 40.0%
GTGGAGTTAACAAGGTTACA+GGG - Chr1:88302718-88302737 None:intergenic 40.0%
GTTTCTATGACATCTCTTCG+GGG - Chr1:88305162-88305181 None:intergenic 40.0%
TAGTATACTGAGTGAACCCT+AGG - Chr1:88303842-88303861 None:intergenic 40.0%
TATGACATCAGAAAGGCTGA+CGG - Chr1:88304366-88304385 None:intergenic 40.0%
TATGGATGTTCTCTCCTTCT+TGG + Chr1:88302018-88302037 MsG0180005195.01.T01:CDS 40.0%
TCAATAAACTGGAGCACACA+TGG - Chr1:88302366-88302385 None:intergenic 40.0%
TCCACCTTTCTTCTTGGTTA+TGG + Chr1:88304460-88304479 MsG0180005195.01.T01:CDS 40.0%
TCCATAACCAAGAAGAAAGG+TGG - Chr1:88304464-88304483 None:intergenic 40.0%
TGAAACTGTGAAAGAACCTG+GGG + Chr1:88305330-88305349 MsG0180005195.01.T01:intron 40.0%
TGAACAAAGTTGGGTGAGAA+AGG + Chr1:88301836-88301855 MsG0180005195.01.T01:intron 40.0%
TGGAAATCCACCTTTCTTCT+TGG + Chr1:88304454-88304473 MsG0180005195.01.T01:CDS 40.0%
TTAACTCCACTGAGTAAAGG+TGG + Chr1:88302728-88302747 MsG0180005195.01.T01:CDS 40.0%
TTAGATCCATTTGGTCCATC+AGG - Chr1:88302689-88302708 None:intergenic 40.0%
TTCCCCATAAGCCAAAAAGA+TGG - Chr1:88305228-88305247 None:intergenic 40.0%
! ACTTGGTTGATACCTGGAAA+GGG - Chr1:88306184-88306203 None:intergenic 40.0%
! GCATTGTTATTGTTGCCCTT+TGG + Chr1:88304605-88304624 MsG0180005195.01.T01:intron 40.0%
! GGACTGTCATGATTTGGAAA+AGG + Chr1:88303562-88303581 MsG0180005195.01.T01:intron 40.0%
! GGTTTTGCATGCAATAATGG+AGG + Chr1:88304626-88304645 MsG0180005195.01.T01:intron 40.0%
! TAGGGTTTTGCAACATTTGG+TGG + Chr1:88303445-88303464 MsG0180005195.01.T01:intron 40.0%
! TCATGATTTGGAAAAGGCCT+AGG + Chr1:88303568-88303587 MsG0180005195.01.T01:intron 40.0%
! TGGGGTTTTCTCTATTGACA+GGG + Chr1:88303748-88303767 MsG0180005195.01.T01:intron 40.0%
! TTGGGGTTTTCTCTATTGAC+AGG + Chr1:88303747-88303766 MsG0180005195.01.T01:intron 40.0%
!! AATTTAGGTTGTGCTTCCAG+AGG + Chr1:88304674-88304693 MsG0180005195.01.T01:intron 40.0%
!! AGAAAAGCACAATTTTGGGG+GGG + Chr1:88302290-88302309 MsG0180005195.01.T01:intron 40.0%
!! ATTTAGGTTGTGCTTCCAGA+GGG + Chr1:88304675-88304694 MsG0180005195.01.T01:intron 40.0%
!! GAGAAAAGCACAATTTTGGG+GGG + Chr1:88302289-88302308 MsG0180005195.01.T01:intron 40.0%
!! TATGGAGCACTGAGAAGAAT+GGG - Chr1:88303187-88303206 None:intergenic 40.0%
!! TGACTTATTTCTACCGGGAA+AGG - Chr1:88302800-88302819 None:intergenic 40.0%
!!! GACCATCTTTTTGGCTTATG+GGG + Chr1:88305223-88305242 MsG0180005195.01.T01:intron 40.0%
!!! TTCCTTTTTGAGTCTCCAGA+TGG + Chr1:88304499-88304518 MsG0180005195.01.T01:CDS 40.0%
AAGTCAATCAGAGTCGCAGT+TGG + Chr1:88302814-88302833 MsG0180005195.01.T01:CDS 45.0%
AATGGAATGGCCATTCCTTG+GGG + Chr1:88302143-88302162 MsG0180005195.01.T01:CDS 45.0%
AATGTTCAGTAGCAGAGCCT+AGG - Chr1:88302343-88302362 None:intergenic 45.0%
ACAGCAAGAACAGCACTCAA+GGG - Chr1:88305271-88305290 None:intergenic 45.0%
AGGGGCAGAATATTCGTATG+GGG + Chr1:88302167-88302186 MsG0180005195.01.T01:intron 45.0%
AGGTGGAACGACAACAATTG+AGG + Chr1:88302745-88302764 MsG0180005195.01.T01:CDS 45.0%
ATGTTCAGTAGCAGAGCCTA+GGG - Chr1:88302342-88302361 None:intergenic 45.0%
CAAACTAGATCAGGTGCTAG+TGG + Chr1:88303779-88303798 MsG0180005195.01.T01:CDS 45.0%
CAGGGGCAGAATATTCGTAT+GGG + Chr1:88302166-88302185 MsG0180005195.01.T01:intron 45.0%
CATACCTTGACATTGTGGGA+AGG + Chr1:88306111-88306130 MsG0180005195.01.T01:CDS 45.0%
CCATTCCATTCCAACTCTGT+AGG - Chr1:88302133-88302152 None:intergenic 45.0%
CCTACAGAGTTGGAATGGAA+TGG + Chr1:88302130-88302149 MsG0180005195.01.T01:CDS 45.0%
CCTCCAAATAGAGGATAACG+AGG - Chr1:88304433-88304452 None:intergenic 45.0%
CCTCGTTATCCTCTATTTGG+AGG + Chr1:88304430-88304449 MsG0180005195.01.T01:CDS 45.0%
CTAAACTAAAGTCAGGTGGG+AGG - Chr1:88303966-88303985 None:intergenic 45.0%
CTCTTCCTACAGAGTTGGAA+TGG + Chr1:88302125-88302144 MsG0180005195.01.T01:CDS 45.0%
CTCTTCGGGGATATACCTTT+AGG - Chr1:88305149-88305168 None:intergenic 45.0%
CTTCAGCACCTTGAAGTAGT+TGG + Chr1:88303281-88303300 MsG0180005195.01.T01:intron 45.0%
GAATGGAATGGCCATTCCTT+GGG + Chr1:88302142-88302161 MsG0180005195.01.T01:CDS 45.0%
GATTTCCAGCCTCCAAATAG+AGG - Chr1:88304442-88304461 None:intergenic 45.0%
GCTGGTACAGAGCTGAAATA+TGG + Chr1:88302956-88302975 MsG0180005195.01.T01:CDS 45.0%
GGCTAGCATATAGCATCTCT+TGG + Chr1:88303644-88303663 MsG0180005195.01.T01:intron 45.0%
GGGTTCACTCAGTATACTAC+CGG + Chr1:88303843-88303862 MsG0180005195.01.T01:CDS 45.0%
GGTTCACTCAGTATACTACC+GGG + Chr1:88303844-88303863 MsG0180005195.01.T01:CDS 45.0%
GTATACTGAGTGAACCCTAG+GGG - Chr1:88303840-88303859 None:intergenic 45.0%
GTTATCCTCTATTTGGAGGC+TGG + Chr1:88304434-88304453 MsG0180005195.01.T01:CDS 45.0%
TACGGTGTCTTCTCGTCATA+TGG - Chr1:88302983-88303002 None:intergenic 45.0%
TATACTGAGTGAACCCTAGG+GGG - Chr1:88303839-88303858 None:intergenic 45.0%
TCAAAAGCAGATGCAACTGC+AGG - Chr1:88305755-88305774 None:intergenic 45.0%
TCATTAAGACACCAACCGCT+CGG + Chr1:88302897-88302916 MsG0180005195.01.T01:CDS 45.0%
TCTGTACCAGCACGTTTAGT+GGG - Chr1:88302947-88302966 None:intergenic 45.0%
TCTTGCAAAACTACCCCCTA+GGG + Chr1:88303823-88303842 MsG0180005195.01.T01:CDS 45.0%
TGAGCATAACATCCCTTTCC+AGG + Chr1:88306169-88306188 MsG0180005195.01.T01:CDS 45.0%
TGCCATCTGGAGACTCAAAA+AGG - Chr1:88304504-88304523 None:intergenic 45.0%
TGGAAAGGGATGTTATGCTC+AGG - Chr1:88306170-88306189 None:intergenic 45.0%
TGTGAATGATTCTACCCGAG+CGG - Chr1:88302915-88302934 None:intergenic 45.0%
TTCTTGCAAAACTACCCCCT+AGG + Chr1:88303822-88303841 MsG0180005195.01.T01:CDS 45.0%
TTGTCTGTATGGAGTGGAGA+TGG + Chr1:88302057-88302076 MsG0180005195.01.T01:CDS 45.0%
! CGATATAAGCTGGTTCATGC+TGG + Chr1:88303115-88303134 MsG0180005195.01.T01:CDS 45.0%
! GACTTGGTTGATACCTGGAA+AGG - Chr1:88306185-88306204 None:intergenic 45.0%
! GAGATACCTGATGGACCAAA+TGG + Chr1:88302680-88302699 MsG0180005195.01.T01:CDS 45.0%
! TTGAGGTATCTTCTGCCATC+TGG - Chr1:88304517-88304536 None:intergenic 45.0%
!! AAAAGCACAATTTTGGGGGG+GGG + Chr1:88302292-88302311 MsG0180005195.01.T01:intron 45.0%
!! ACGTTCTAGCTCCTCAACAA+CGG - Chr1:88303053-88303072 None:intergenic 45.0%
!! GAAAAGCACAATTTTGGGGG+GGG + Chr1:88302291-88302310 MsG0180005195.01.T01:intron 45.0%
!! GCAAGATGTACTTCTGAAGC+AGG - Chr1:88302557-88302576 None:intergenic 45.0%
!! GTATGGAGCACTGAGAAGAA+TGG - Chr1:88303188-88303207 None:intergenic 45.0%
!! TTTAGGTTGTGCTTCCAGAG+GGG + Chr1:88304676-88304695 MsG0180005195.01.T01:intron 45.0%
!! TTTATCGGCTCACTATGGTG+TGG - Chr1:88304167-88304186 None:intergenic 45.0%
!!! CTGCTTTTATCGGCTCACTA+TGG - Chr1:88304172-88304191 None:intergenic 45.0%
AATCACGGCTGCAGGATCTT+TGG - Chr1:88304703-88304722 None:intergenic 50.0%
AATCTCCACGTCCTCCAAGA+AGG - Chr1:88302035-88302054 None:intergenic 50.0%
AATGATTCTACCCGAGCGGT+TGG - Chr1:88302911-88302930 None:intergenic 50.0%
ACATTCCCTGGAACCTTTCC+CGG + Chr1:88302784-88302803 MsG0180005195.01.T01:CDS 50.0%
AGAATATTCGTATGGGGGGG+GGG + Chr1:88302173-88302192 MsG0180005195.01.T01:intron 50.0%
AGCCTAGGGGAAAGGAACAT+GGG - Chr1:88302328-88302347 None:intergenic 50.0%
AGCTCCTCAACAACGGCAAA+GGG - Chr1:88303046-88303065 None:intergenic 50.0%
CAATCCCTTTGCCGTTGTTG+AGG + Chr1:88303039-88303058 MsG0180005195.01.T01:CDS 50.0%
CACAGCAAGAACAGCACTCA+AGG - Chr1:88305272-88305291 None:intergenic 50.0%
CAGAATATTCGTATGGGGGG+GGG + Chr1:88302172-88302191 MsG0180005195.01.T01:intron 50.0%
CAGCAAGAACAGCACTCAAG+GGG - Chr1:88305270-88305289 None:intergenic 50.0%
CAGTCCTTCCCACAATGTCA+AGG - Chr1:88306118-88306137 None:intergenic 50.0%
CATTAAGACACCAACCGCTC+GGG + Chr1:88302898-88302917 MsG0180005195.01.T01:CDS 50.0%
CCAATGGACCAGCTGAGTTA+AGG + Chr1:88303608-88303627 MsG0180005195.01.T01:intron 50.0%
CCTTAACTCAGCTGGTCCAT+TGG - Chr1:88303611-88303630 None:intergenic 50.0%
CTCTGTACCAGCACGTTTAG+TGG - Chr1:88302948-88302967 None:intergenic 50.0%
CTTCCTCTTCCCAGTAGTTG+CGG - Chr1:88302624-88302643 None:intergenic 50.0%
GCAGAATATTCGTATGGGGG+GGG + Chr1:88302171-88302190 MsG0180005195.01.T01:intron 50.0%
GCAGGGGCAGAATATTCGTA+TGG + Chr1:88302165-88302184 MsG0180005195.01.T01:intron 50.0%
GGAATGGAATGGCCATTCCT+TGG + Chr1:88302141-88302160 MsG0180005195.01.T01:CDS 50.0%
GGATGTTCTCTCCTTCTTGG+AGG + Chr1:88302021-88302040 MsG0180005195.01.T01:CDS 50.0%
GGCAGAATATTCGTATGGGG+GGG + Chr1:88302170-88302189 MsG0180005195.01.T01:intron 50.0%
GGGCAGAATATTCGTATGGG+GGG + Chr1:88302169-88302188 MsG0180005195.01.T01:intron 50.0%
GGGGCAGAATATTCGTATGG+GGG + Chr1:88302168-88302187 MsG0180005195.01.T01:intron 50.0%
GTCGTTCCACCTTTACTCAG+TGG - Chr1:88302737-88302756 None:intergenic 50.0%
TAGCTCCTCAACAACGGCAA+AGG - Chr1:88303047-88303066 None:intergenic 50.0%
TCAAAGCTGCCGCAACTACT+GGG + Chr1:88302612-88302631 MsG0180005195.01.T01:CDS 50.0%
TGAAAAGGAATCACGGCTGC+AGG - Chr1:88304711-88304730 None:intergenic 50.0%
TGACATTGTGGGAAGGACTG+TGG + Chr1:88306118-88306137 MsG0180005195.01.T01:CDS 50.0%
TGTATGGAGTGGAGATGGAG+AGG + Chr1:88302062-88302081 MsG0180005195.01.T01:CDS 50.0%
TGTTCAGTAGCAGAGCCTAG+GGG - Chr1:88302341-88302360 None:intergenic 50.0%
TTCTACCGGGAAAGGTTCCA+GGG - Chr1:88302792-88302811 None:intergenic 50.0%
TTTCTACCGGGAAAGGTTCC+AGG - Chr1:88302793-88302812 None:intergenic 50.0%
! CAATTGACTGTGTTGACCCC+AGG - Chr1:88305349-88305368 None:intergenic 50.0%
! CATGCTGGTGCTAGACACAA+AGG + Chr1:88303130-88303149 MsG0180005195.01.T01:CDS 50.0%
! GCTTGGACTTGGTTGATACC+TGG - Chr1:88306190-88306209 None:intergenic 50.0%
!! AAAGCACAATTTTGGGGGGG+GGG + Chr1:88302293-88302312 MsG0180005195.01.T01:intron 50.0%
AATATTCTGCCCCTGCCCCA+AGG - Chr1:88302161-88302180 None:intergenic 55.0%
AATGGCCATTCCTTGGGGCA+GGG + Chr1:88302148-88302167 MsG0180005195.01.T01:CDS 55.0%
AGTAGCAGAGCCTAGGGGAA+AGG - Chr1:88302336-88302355 None:intergenic 55.0%
CAACCACCGTCTGAGCAAGA+GGG - Chr1:88304555-88304574 None:intergenic 55.0%
CAAGAACAGCACTCAAGGGG+TGG - Chr1:88305267-88305286 None:intergenic 55.0%
CACCCATGTTCCTTTCCCCT+AGG + Chr1:88302323-88302342 MsG0180005195.01.T01:intron 55.0%
CATTGTGGGAAGGACTGTGG+TGG + Chr1:88306121-88306140 MsG0180005195.01.T01:CDS 55.0%
CTCAAAGCTGCCGCAACTAC+TGG + Chr1:88302611-88302630 MsG0180005195.01.T01:CDS 55.0%
GAATATTCGTATGGGGGGGG+GGG + Chr1:88302174-88302193 MsG0180005195.01.T01:intron 55.0%
GAGCCTAGGGGAAAGGAACA+TGG - Chr1:88302329-88302348 None:intergenic 55.0%
GCTAGATGTTCGGCTTCAGC+AGG - Chr1:88302587-88302606 None:intergenic 55.0%
TCAACCACCGTCTGAGCAAG+AGG - Chr1:88304556-88304575 None:intergenic 55.0%
TCTCTCCTTCTTGGAGGACG+TGG + Chr1:88302027-88302046 MsG0180005195.01.T01:CDS 55.0%
TGGTTGCCCTCTTGCTCAGA+CGG + Chr1:88304546-88304565 MsG0180005195.01.T01:CDS 55.0%
! CAGGTGGGAGGTGTGAGAAA+AGG - Chr1:88303954-88303973 None:intergenic 55.0%
! GGGAAGGACTGTGGTGGTTT+TGG + Chr1:88306127-88306146 MsG0180005195.01.T01:CDS 55.0%
!! AAGCACAATTTTGGGGGGGG+GGG + Chr1:88302294-88302313 MsG0180005195.01.T01:intron 55.0%
ATGGCCATTCCTTGGGGCAG+GGG + Chr1:88302149-88302168 MsG0180005195.01.T01:CDS 60.0%
CACTCAAGGGGTGGAAGCAG+TGG - Chr1:88305258-88305277 None:intergenic 60.0%
CTGCCGCAACTACTGGGAAG+AGG + Chr1:88302618-88302637 MsG0180005195.01.T01:CDS 60.0%
GAATGGCCATTCCTTGGGGC+AGG + Chr1:88302147-88302166 MsG0180005195.01.T01:CDS 60.0%
GCAGGATCTTTGGACCCCTC+TGG - Chr1:88304693-88304712 None:intergenic 60.0%
GTGGAGCCCACTAAACGTGC+TGG + Chr1:88302938-88302957 MsG0180005195.01.T01:CDS 60.0%
TTGCCCTCTTGCTCAGACGG+TGG + Chr1:88304549-88304568 MsG0180005195.01.T01:CDS 60.0%
!! AGCACAATTTTGGGGGGGGG+GGG + Chr1:88302295-88302314 MsG0180005195.01.T01:intron 60.0%
TCTGCCCCTGCCCCAAGGAA+TGG - Chr1:88302156-88302175 None:intergenic 65.0%
!! GCACAATTTTGGGGGGGGGG+GGG + Chr1:88302296-88302315 MsG0180005195.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 88301601 88306217 88301601 ID=MsG0180005195.01;Name=MsG0180005195.01
Chr1 mRNA 88301601 88306217 88301601 ID=MsG0180005195.01.T01;Parent=MsG0180005195.01;Name=MsG0180005195.01.T01;_AED=0.40;_eAED=0.48;_QI=0|0.66|0.42|1|0.83|0.71|7|0|454
Chr1 exon 88301601 88301651 88301601 ID=MsG0180005195.01.T01:exon:37131;Parent=MsG0180005195.01.T01
Chr1 exon 88302001 88302181 88302001 ID=MsG0180005195.01.T01:exon:37132;Parent=MsG0180005195.01.T01
Chr1 exon 88302546 88303164 88302546 ID=MsG0180005195.01.T01:exon:37133;Parent=MsG0180005195.01.T01
Chr1 exon 88303769 88303916 88303769 ID=MsG0180005195.01.T01:exon:37134;Parent=MsG0180005195.01.T01
Chr1 exon 88304412 88304591 88304412 ID=MsG0180005195.01.T01:exon:37135;Parent=MsG0180005195.01.T01
Chr1 exon 88304681 88304749 88304681 ID=MsG0180005195.01.T01:exon:37136;Parent=MsG0180005195.01.T01
Chr1 exon 88306101 88306217 88306101 ID=MsG0180005195.01.T01:exon:37137;Parent=MsG0180005195.01.T01
Chr1 CDS 88301601 88301651 88301601 ID=MsG0180005195.01.T01:cds;Parent=MsG0180005195.01.T01
Chr1 CDS 88302001 88302181 88302001 ID=MsG0180005195.01.T01:cds;Parent=MsG0180005195.01.T01
Chr1 CDS 88302546 88303164 88302546 ID=MsG0180005195.01.T01:cds;Parent=MsG0180005195.01.T01
Chr1 CDS 88303769 88303916 88303769 ID=MsG0180005195.01.T01:cds;Parent=MsG0180005195.01.T01
Chr1 CDS 88304412 88304591 88304412 ID=MsG0180005195.01.T01:cds;Parent=MsG0180005195.01.T01
Chr1 CDS 88304681 88304749 88304681 ID=MsG0180005195.01.T01:cds;Parent=MsG0180005195.01.T01
Chr1 CDS 88306101 88306217 88306101 ID=MsG0180005195.01.T01:cds;Parent=MsG0180005195.01.T01
Gene Sequence

>MsG0180005195.01.T01

ATGCAGATTGATCTGAATTCTCACATAATTAAGGTGTACTTGACATTGAAGTGTGTAAGGAATGTATGTATGGATGTTCTCTCCTTCTTGGAGGACGTGGAGATTCTTTGTCTGTATGGAGTGGAGATGGAGAGGAATCATCGTTCCATGCCTTGTTTTCTACTGAGTAAGAAAACTCTTCCTACAGAGTTGGAATGGAATGGCCATTCCTTGGGGCAGGGGCAGAATATTCGCACTACTCCTGCTTCAGAAGTACATCTTGCTTTTTCACCTGCTGAAGCCGAACATCTAGCAGTACTCAAAGCTGCCGCAACTACTGGGAAGAGGAAGAAGAAGACTTATGTTCCGCTTGATGTTAAATCTGCTGAGATACCTGATGGACCAAATGGATCTAAATTTTTCCCTGTAACCTTGTTAACTCCACTGAGTAAAGGTGGAACGACAACAATTGAGGTGCTTTACATATTAACACATTCCCTGGAACCTTTCCCGGTAGAAATAAGTCAATCAGAGTCGCAGTTGGTTTATTTCCGTGATAGTGCAATATTATTGTCTCCCTATCATGTCAAGCAACAAACAACTTTCATTAAGACACCAACCGCTCGGGTAGAATCATTCACAGTAGTGGAGCCCACTAAACGTGCTGGTACAGAGCTGAAATATGGGCCATATGACGAGAAGACACCGTATTCATATTCTCCTGTACTTGTTCATTTTGAGAATAACAATCCCTTTGCCGTTGTTGAGGAGCTAGAACGTGAAATTGAAATATCTCATTGGGGAAGCCTACAAATCACAGAGCGATATAAGCTGGTTCATGCTGGTGCTAGACACAAAGGTGTTTTTTCAAGGGTTGAATATCAAACTAGATCAGGTGCTAGTGGTGTTGCTTCATTTAAACATCTTCTTGCAAAACTACCCCCTAGGGTTCACTCAGTATACTACCGGGATGAAATAGGCAATATTTCTTCTTCACATTTACGCACAGATTTTCTAAAGTCAGAACTTGAATTTGAACCTCGTTATCCTCTATTTGGAGGCTGGAAATCCACCTTTCTTCTTGGTTATGGACTACCATTACAAGACTTCCTTTTTGAGTCTCCAGATGGCAGAAGATACCTCAACTTTACTTATGGTTGCCCTCTTGCTCAGACGGTGGTTGACAAGTTGATTATAAAAGTTGTGCTTCCAGAGGGGTCCAAAGATCCTGCAGCCGTGATTCCTTTTCAAGTAGATCAACATCTAGAGACTAAGTATTCATACCTTGACATTGTGGGAAGGACTGTGGTGGTTTTGGAGAAGAGAAATGTTGTTCCTGAGCATAACATCCCTTTCCAGGTATCAACCAAGTCCAAGCTTTTATAA
Protein sequence

>MsG0180005195.01.T01

MQIDLNSHIIKVYLTLKCVRNVCMDVLSFLEDVEILCLYGVEMERNHRSMPCFLLSKKTLPTELEWNGHSLGQGQNIRTTPASEVHLAFSPAEAEHLAVLKAAATTGKRKKKTYVPLDVKSAEIPDGPNGSKFFPVTLLTPLSKGGTTTIEVLYILTHSLEPFPVEISQSESQLVYFRDSAILLSPYHVKQQTTFIKTPTARVESFTVVEPTKRAGTELKYGPYDEKTPYSYSPVLVHFENNNPFAVVEELEREIEISHWGSLQITERYKLVHAGARHKGVFSRVEYQTRSGASGVASFKHLLAKLPPRVHSVYYRDEIGNISSSHLRTDFLKSELEFEPRYPLFGGWKSTFLLGYGLPLQDFLFESPDGRRYLNFTYGCPLAQTVVDKLIIKVVLPEGSKDPAAVIPFQVDQHLETKYSYLDIVGRTVVVLEKRNVVPEHNIPFQVSTKSKLL*