AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025446.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025446.01.T02 MTR_5g029240 96.800 125 3 1 1 125 1 124 2.26e-84 242
MsG0580025446.01.T02 MTR_3g023120 92.035 113 9 0 13 125 3 115 8.14e-75 218
MsG0580025446.01.T02 MTR_3g023120 90.805 87 8 0 14 100 4 90 2.33e-53 163
MsG0580025446.01.T01 MTR_5g029240 77.564 156 3 2 1 156 1 124 1.83e-71 211
MsG0580025446.01.T01 MTR_3g023120 72.222 144 9 1 13 156 3 115 7.39e-68 201
MsG0580025446.01.T01 MTR_3g023120 66.387 119 9 1 13 131 3 90 2.03e-46 147
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025446.01.T02 AT1G32210 89.381 113 12 0 13 125 3 115 1.97e-72 212
MsG0580025446.01.T02 AT2G35520 87.500 112 14 0 14 125 4 115 1.57e-70 207
MsG0580025446.01.T02 AT2G35520 87.500 112 14 0 14 125 4 115 1.57e-70 207
MsG0580025446.01.T02 AT2G35520 86.726 113 14 1 14 125 4 116 9.40e-69 202
MsG0580025446.01.T02 AT1G32210 88.372 86 10 0 13 98 3 88 5.39e-51 157
MsG0580025446.01.T01 AT1G32210 70.139 144 12 1 13 156 3 115 2.76e-65 195
MsG0580025446.01.T01 AT2G35520 68.056 144 15 1 13 156 3 115 1.83e-63 190
MsG0580025446.01.T01 AT2G35520 68.056 144 15 1 13 156 3 115 1.83e-63 190
MsG0580025446.01.T01 AT2G35520 67.586 145 15 2 13 156 3 116 9.46e-62 186
MsG0580025446.01.T01 AT1G32210 64.957 117 10 1 13 129 3 88 4.57e-44 141

Find 10 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGTTCTCTTTATTGACT+TGG 0.294683 5:+18735695 None:intergenic
GTAAGACGAAAACTAAATTT+AGG 0.335361 5:+18735764 None:intergenic
CTGCAATGTGGTGCTTCACT+TGG 0.443749 5:-18735435 MsG0580025446.01.T02:CDS
TAAAGAGAACAAGGAATTCA+AGG 0.449780 5:-18735686 MsG0580025446.01.T02:intron
TCTCTTTATTGACTTGGATC+CGG 0.455545 5:+18735701 None:intergenic
TTTAGGCACATGTATCTAGT+AGG 0.490985 5:+18735781 None:intergenic
CCAAGTCAATAAAGAGAACA+AGG 0.563011 5:-18735695 MsG0580025446.01.T02:CDS
GAAACTCATGCATTCAAATG+AGG 0.567049 5:-18735812 MsG0580025446.01.T02:intron
CTTTATTGACTTGGATCCGG+AGG 0.598115 5:+18735704 None:intergenic
CATGTATCTAGTAGGAATTG+AGG 0.614668 5:+18735789 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAACAAAAAGATTAATATA+TGG + Chr5:18735526-18735545 None:intergenic 10.0%
!! AAAGTATATAAAAATTGATC+AGG - Chr5:18736744-18736763 MsG0580025446.01.T02:intron 15.0%
!! ATATATTCATACTGATAATT+TGG - Chr5:18738181-18738200 MsG0580025446.01.T02:intron 15.0%
!! ATTAGTATTATTATATACCT+GGG - Chr5:18738362-18738381 MsG0580025446.01.T02:CDS 15.0%
!!! CATTTTGTTTAATTGTATTT+TGG + Chr5:18736518-18736537 None:intergenic 15.0%
!!! GCAAATAAGAAATTATTTTT+TGG - Chr5:18737599-18737618 MsG0580025446.01.T02:intron 15.0%
!!! TTTGCTCTTATTTATAATTA+TGG - Chr5:18735632-18735651 MsG0580025446.01.T02:intron 15.0%
!!! TTTTAACGGTTTTAAAAAAA+TGG - Chr5:18737577-18737596 MsG0580025446.01.T02:intron 15.0%
!! AAGATAATTGCACTTAAATA+AGG + Chr5:18736082-18736101 None:intergenic 20.0%
!! ATGAAGAAATGAAATGAAAA+GGG + Chr5:18735388-18735407 None:intergenic 20.0%
!! ATTCAAAACAATATGTTGTT+AGG - Chr5:18736170-18736189 MsG0580025446.01.T02:intron 20.0%
!! CATTAGTATTATTATATACC+TGG - Chr5:18738361-18738380 MsG0580025446.01.T02:CDS 20.0%
!! TAAAAGTAGAAGAATATCAT+TGG + Chr5:18736696-18736715 None:intergenic 20.0%
!! TATGAAGAAATGAAATGAAA+AGG + Chr5:18735389-18735408 None:intergenic 20.0%
!! TCTGTATGTTTATACATTAA+TGG + Chr5:18736639-18736658 None:intergenic 20.0%
!! TTATAATGATGAATTTCAGA+AGG - Chr5:18738500-18738519 MsG0580025446.01.T02:five_prime_UTR 20.0%
!!! AAGAAATTATTTTTTGGTGA+AGG - Chr5:18737605-18737624 MsG0580025446.01.T02:intron 20.0%
!!! AATTATTTTGTTGTAGTTCA+TGG + Chr5:18737362-18737381 None:intergenic 20.0%
!!! ACTTGTTTTATGAAAAATCA+TGG - Chr5:18736888-18736907 MsG0580025446.01.T02:intron 20.0%
!!! ATGATATTCTTCTACTTTTA+TGG - Chr5:18736696-18736715 MsG0580025446.01.T02:intron 20.0%
!!! TAACAACATATTGTTTTGAA+TGG + Chr5:18736171-18736190 None:intergenic 20.0%
!!! TAATGAGTTCTTACTTTTAA+CGG - Chr5:18737563-18737582 MsG0580025446.01.T02:intron 20.0%
!!! TAATGGCTCTAAATAATATT+GGG + Chr5:18736622-18736641 None:intergenic 20.0%
!!! TCTGAAATTCATCATTATAA+AGG + Chr5:18738500-18738519 None:intergenic 20.0%
!!! TGATATTCTTCTACTTTTAT+GGG - Chr5:18736697-18736716 MsG0580025446.01.T02:intron 20.0%
!!! TTAATGGCTCTAAATAATAT+TGG + Chr5:18736623-18736642 None:intergenic 20.0%
!!! TTTGATTAATTTTTTTCAGC+AGG + Chr5:18736724-18736743 None:intergenic 20.0%
!!! TTTGTTTAATTGTATTTTGG+AGG + Chr5:18736515-18736534 None:intergenic 20.0%
! AAGCATATATGTGTAAGATA+TGG - Chr5:18737184-18737203 MsG0580025446.01.T02:intron 25.0%
! AGTTCATATTGAACAAAGAT+AGG - Chr5:18735994-18736013 MsG0580025446.01.T02:CDS 25.0%
! ATGAAAAATCATGGTAAGTA+GGG - Chr5:18736897-18736916 MsG0580025446.01.T02:intron 25.0%
! CATCTGATATGCAATAAAAA+AGG - Chr5:18736586-18736605 MsG0580025446.01.T02:intron 25.0%
! CTTCAAATCAAGAATAATCT+AGG + Chr5:18736931-18736950 None:intergenic 25.0%
! GTAAGACGAAAACTAAATTT+AGG + Chr5:18737934-18737953 None:intergenic 25.0%
! GTTCATATTGAACAAAGATA+GGG - Chr5:18735995-18736014 MsG0580025446.01.T02:CDS 25.0%
! TACAAGAAAATGATGATTGT+GGG + Chr5:18737023-18737042 None:intergenic 25.0%
! TATGAAAAATCATGGTAAGT+AGG - Chr5:18736896-18736915 MsG0580025446.01.T02:intron 25.0%
! TTAACCAAAATGTCATAATC+AGG + Chr5:18735672-18735691 None:intergenic 25.0%
! TTACAAGAAAATGATGATTG+TGG + Chr5:18737024-18737043 None:intergenic 25.0%
! TTACACATATATGCTTTCTT+AGG + Chr5:18737180-18737199 None:intergenic 25.0%
!! AATGATTTTTCTTCATTCGA+CGG + Chr5:18738345-18738364 None:intergenic 25.0%
!! CTATAAATCTCTTTTCACTT+TGG + Chr5:18736796-18736815 None:intergenic 25.0%
!! GATTAGAAATCTCAGTATTT+TGG + Chr5:18737851-18737870 None:intergenic 25.0%
!! TATATTATAGTCAGAGTGTT+AGG - Chr5:18737069-18737088 MsG0580025446.01.T02:intron 25.0%
!! TGATTTTAAATGTAACAAGC+TGG - Chr5:18736114-18736133 MsG0580025446.01.T02:intron 25.0%
!! TTTTCCTGATTATGACATTT+TGG - Chr5:18735665-18735684 MsG0580025446.01.T02:intron 25.0%
!!! CTTTTTTCTTTCTAACATTC+TGG + Chr5:18735919-18735938 None:intergenic 25.0%
AAAATGATGATTGTGGGTAA+AGG + Chr5:18737017-18737036 None:intergenic 30.0%
AAATGATGATTGTGGGTAAA+GGG + Chr5:18737016-18737035 None:intergenic 30.0%
AAATTGCCATATATTACTCG+TGG + Chr5:18736980-18736999 None:intergenic 30.0%
AACCAGATCTTTACTAGAAT+AGG - Chr5:18736374-18736393 MsG0580025446.01.T02:intron 30.0%
AAGATCTCCACTATTGTTTA+TGG - Chr5:18736824-18736843 MsG0580025446.01.T02:intron 30.0%
AAGCAAGATTGCATATTTCT+TGG + Chr5:18737516-18737535 None:intergenic 30.0%
AATGATCTGAAAGAGGAAAT+GGG + Chr5:18735432-18735451 None:intergenic 30.0%
AATTCAACCTTGAGATTTGA+AGG + Chr5:18735351-18735370 None:intergenic 30.0%
ACAGATCTAGAAGAAATTGA+GGG + Chr5:18735503-18735522 None:intergenic 30.0%
AGAAATGAAATGAAAAGGGA+AGG + Chr5:18735384-18735403 None:intergenic 30.0%
AGAGTGAAGTGAATAGAAAA+TGG - Chr5:18735230-18735249 MsG0580025446.01.T02:three_prime_UTR 30.0%
AGATCTCCACTATTGTTTAT+GGG - Chr5:18736825-18736844 MsG0580025446.01.T02:intron 30.0%
AGTAAAAGAACAATAGTCGT+AGG - Chr5:18736850-18736869 MsG0580025446.01.T02:intron 30.0%
ATCAGTATGAATATATCCAG+TGG + Chr5:18738177-18738196 None:intergenic 30.0%
ATGAACTTCCTTGGTTAAAT+TGG - Chr5:18738288-18738307 MsG0580025446.01.T02:intron 30.0%
CAAAACAAAGTAAGAAGGAA+AGG - Chr5:18738113-18738132 MsG0580025446.01.T02:intron 30.0%
CAATATGTTGTTAGGAAACT+TGG - Chr5:18736178-18736197 MsG0580025446.01.T02:intron 30.0%
CATTGAGTTAGTAATCAAAG+AGG + Chr5:18736484-18736503 None:intergenic 30.0%
CCATGAACTACAACAAAATA+TGG - Chr5:18737359-18737378 MsG0580025446.01.T02:intron 30.0%
GAACTCATTAAATGAGAAAC+TGG + Chr5:18737553-18737572 None:intergenic 30.0%
GAATATCATTGGAATTCGTA+AGG + Chr5:18736685-18736704 None:intergenic 30.0%
TAAAGAGAACAAGGAATTCA+AGG - Chr5:18738009-18738028 MsG0580025446.01.T02:intron 30.0%
TAAGTTTATGCATACTGGAT+GGG + Chr5:18737107-18737126 None:intergenic 30.0%
! ACATTCTTTTCTTAATGAGC+AGG - Chr5:18737681-18737700 MsG0580025446.01.T02:intron 30.0%
! ATATGGATTATGCAGAAGAT+AGG - Chr5:18737410-18737429 MsG0580025446.01.T02:intron 30.0%
!! CCATATTTTGTTGTAGTTCA+TGG + Chr5:18737396-18737415 None:intergenic 30.0%
!! CTTTCCTTCTTACTTTGTTT+TGG + Chr5:18738115-18738134 None:intergenic 30.0%
!!! ATTGTTGTTTTCAGCCAATA+TGG + Chr5:18737296-18737315 None:intergenic 30.0%
!!! CAGTATTTTGGAGTGTAAAT+GGG + Chr5:18737839-18737858 None:intergenic 30.0%
!!! TATTTTTTGGTGAAGGTTTG+AGG - Chr5:18737612-18737631 MsG0580025446.01.T02:intron 30.0%
!!! TCAGTATTTTGGAGTGTAAA+TGG + Chr5:18737840-18737859 None:intergenic 30.0%
!!! TTGTTGTTTTCAGCCAATAT+GGG + Chr5:18737295-18737314 None:intergenic 30.0%
AAAATCATGGTAAGTAGGGT+TGG - Chr5:18736901-18736920 MsG0580025446.01.T02:intron 35.0%
AACAATGGTTGCCTTGAATT+TGG + Chr5:18738085-18738104 None:intergenic 35.0%
ACACCTAAGTTTATGCATAC+TGG + Chr5:18737112-18737131 None:intergenic 35.0%
ACAGTAACATGATAAAACCC+AGG + Chr5:18738382-18738401 None:intergenic 35.0%
ACCAAGTGATTGAACTTAAG+TGG - Chr5:18735761-18735780 MsG0580025446.01.T02:intron 35.0%
AGAGATCAATGATCTGAAAG+AGG + Chr5:18735439-18735458 None:intergenic 35.0%
AGTAAGAAGGAAAGGAAATG+AGG - Chr5:18738121-18738140 MsG0580025446.01.T02:intron 35.0%
ATGATCTGAAAGAGGAAATG+GGG + Chr5:18735431-18735450 None:intergenic 35.0%
CAAAATGAAGTCCCCAAAAA+TGG + Chr5:18738432-18738451 None:intergenic 35.0%
CAAGCATTAAGATAGCCAAA+AGG - Chr5:18736314-18736333 MsG0580025446.01.T02:intron 35.0%
CAATGATCTGAAAGAGGAAA+TGG + Chr5:18735433-18735452 None:intergenic 35.0%
CACCTATTCTAGTAAAGATC+TGG + Chr5:18736379-18736398 None:intergenic 35.0%
CATCCAGTATGCATAAACTT+AGG - Chr5:18737106-18737125 MsG0580025446.01.T02:intron 35.0%
CATGAGTTTCAACTTCAAGT+AGG + Chr5:18737873-18737892 None:intergenic 35.0%
CATGTATCTAGTAGGAATTG+AGG + Chr5:18737909-18737928 None:intergenic 35.0%
CCAAGTCAATAAAGAGAACA+AGG - Chr5:18738000-18738019 MsG0580025446.01.T02:intron 35.0%
CCAAGTGATTGAACTTAAGT+GGG - Chr5:18735762-18735781 MsG0580025446.01.T02:intron 35.0%
CTAAGTTTATGCATACTGGA+TGG + Chr5:18737108-18737127 None:intergenic 35.0%
CTAGAATAGGTGTAGAAGAT+AGG - Chr5:18736387-18736406 MsG0580025446.01.T02:intron 35.0%
CTTGCCAAAACAAAGTAAGA+AGG - Chr5:18738108-18738127 MsG0580025446.01.T02:intron 35.0%
GAAACTCATGCATTCAAATG+AGG - Chr5:18737883-18737902 MsG0580025446.01.T02:intron 35.0%
GACAGATCTAGAAGAAATTG+AGG + Chr5:18735504-18735523 None:intergenic 35.0%
GATCTCCACTATTGTTTATG+GGG - Chr5:18736826-18736845 MsG0580025446.01.T02:intron 35.0%
TAATGAGCAGGTAGTTTACA+TGG - Chr5:18737693-18737712 MsG0580025446.01.T02:intron 35.0%
TACTTCCCCATAAACAATAG+TGG + Chr5:18736834-18736853 None:intergenic 35.0%
TATTGAACAAAGATAGGGCT+AGG - Chr5:18736000-18736019 MsG0580025446.01.T02:intron 35.0%
TCACGAAACCAATTTAACCA+AGG + Chr5:18738299-18738318 None:intergenic 35.0%
TCATGATCAGGATTGAATGA+GGG + Chr5:18736451-18736470 None:intergenic 35.0%
TGCACTACATCAAACAACTA+AGG + Chr5:18735730-18735749 None:intergenic 35.0%
TGTGATCCACGAGTAATATA+TGG - Chr5:18736971-18736990 MsG0580025446.01.T02:intron 35.0%
TTCAGCCAATATGGGAAATA+AGG + Chr5:18737287-18737306 None:intergenic 35.0%
TTGTATGTAGCTACTTCACT+AGG - Chr5:18736229-18736248 MsG0580025446.01.T02:intron 35.0%
TTTAGGCACATGTATCTAGT+AGG + Chr5:18737917-18737936 None:intergenic 35.0%
TTTGTTTCCAAGAGATTTGC+AGG - Chr5:18737145-18737164 MsG0580025446.01.T02:intron 35.0%
! AACAATAGTGGAGATCTTTC+TGG + Chr5:18736822-18736841 None:intergenic 35.0%
! ACAATAGTGGAGATCTTTCT+GGG + Chr5:18736821-18736840 None:intergenic 35.0%
! AGCTAAGTATTGTTTCCGAT+GGG + Chr5:18735839-18735858 None:intergenic 35.0%
! ATTTTGAATCAGTTTGCCTC+CGG - Chr5:18737975-18737994 MsG0580025446.01.T02:intron 35.0%
! CCTTGTTCTCTTTATTGACT+TGG + Chr5:18738003-18738022 None:intergenic 35.0%
! CTGCATATTATTTTCTCCAC+TGG - Chr5:18738158-18738177 MsG0580025446.01.T02:intron 35.0%
! TAGCTAAGTATTGTTTCCGA+TGG + Chr5:18735840-18735859 None:intergenic 35.0%
! TCTTTTCACTTTGGTTGTTG+AGG + Chr5:18736787-18736806 None:intergenic 35.0%
! TGATGCTATTGCTATCCTTT+TGG + Chr5:18736332-18736351 None:intergenic 35.0%
! TGATTTTGTTCTCTGCAATG+TGG - Chr5:18738248-18738267 MsG0580025446.01.T02:CDS 35.0%
! TTGGTTAAATTGGTTTCGTG+AGG - Chr5:18738298-18738317 MsG0580025446.01.T02:intron 35.0%
!! TCTCTTTATTGACTTGGATC+CGG + Chr5:18737997-18738016 None:intergenic 35.0%
!! TTCTAACATTCTGGTTCACA+AGG + Chr5:18735910-18735929 None:intergenic 35.0%
!! TTTTGGCTGGTAAGTTTCAA+TGG - Chr5:18737782-18737801 MsG0580025446.01.T02:intron 35.0%
!!! TGTTTTGGCAAGTTCAACAA+TGG + Chr5:18738100-18738119 None:intergenic 35.0%
AAACCGAGTTCAAATCCCAT+CGG - Chr5:18735821-18735840 MsG0580025446.01.T02:intron 40.0%
AAATTGAGGGAAGAACCTGA+AGG + Chr5:18735490-18735509 None:intergenic 40.0%
AACCTTGAGATTTGAAGGTG+TGG + Chr5:18735346-18735365 None:intergenic 40.0%
AATGAGCTTTCCGTTGAAGA+CGG - Chr5:18735786-18735805 MsG0580025446.01.T02:intron 40.0%
ACAAAGATAGGGCTAGGTTT+AGG - Chr5:18736006-18736025 MsG0580025446.01.T02:intron 40.0%
ATATGGGAAATAAGGAACCC+CGG + Chr5:18737279-18737298 None:intergenic 40.0%
ATCTTCTTCTTCCACCACAA+AGG - Chr5:18735278-18735297 MsG0580025446.01.T02:three_prime_UTR 40.0%
ATGATTGTGGGTAAAGGGAA+AGG + Chr5:18737011-18737030 None:intergenic 40.0%
CATGTATGCCTTGTATGAGT+AGG - Chr5:18735944-18735963 MsG0580025446.01.T02:CDS 40.0%
CCAGAAAGGAAGGAGTTAAA+TGG + Chr5:18737736-18737755 None:intergenic 40.0%
CCATTTAACTCCTTCCTTTC+TGG - Chr5:18737733-18737752 MsG0580025446.01.T02:intron 40.0%
CCCAAAAATGGAAGAGGTAA+GGG + Chr5:18738420-18738439 None:intergenic 40.0%
CCCACTTAAGTTCAATCACT+TGG + Chr5:18735765-18735784 None:intergenic 40.0%
CCTAAACAATCCGTCTTCAA+CGG + Chr5:18735799-18735818 None:intergenic 40.0%
CTCATGATCAGGATTGAATG+AGG + Chr5:18736452-18736471 None:intergenic 40.0%
CTCCATGGACATTGATATGT+AGG - Chr5:18737251-18737270 MsG0580025446.01.T02:intron 40.0%
CTCCTACATATCAATGTCCA+TGG + Chr5:18737256-18737275 None:intergenic 40.0%
GAATGGCATAATTGAGCTGT+CGG + Chr5:18736154-18736173 None:intergenic 40.0%
GATGAAGATGAAGAAGACGA+CGG + Chr5:18735261-18735280 None:intergenic 40.0%
GATGTTACGAGCCAAATTCA+AGG - Chr5:18738071-18738090 MsG0580025446.01.T02:intron 40.0%
TCTCGAAACCTACTCATACA+AGG + Chr5:18735955-18735974 None:intergenic 40.0%
TGAAAGAGGAAATGGGGTTA+GGG + Chr5:18735425-18735444 None:intergenic 40.0%
TGGCTGAACTCCAAATTACT+AGG - Chr5:18735876-18735895 MsG0580025446.01.T02:intron 40.0%
TTACACTCCTGCAAATCTCT+TGG + Chr5:18737155-18737174 None:intergenic 40.0%
TTTCCGATGGGATTTGAACT+CGG + Chr5:18735827-18735846 None:intergenic 40.0%
! AAGGTTTGAGGTCGATAACT+AGG - Chr5:18737624-18737643 MsG0580025446.01.T02:intron 40.0%
! GCTAGATTTTACTTACCTCC+TGG - Chr5:18735856-18735875 MsG0580025446.01.T02:intron 40.0%
! GGGTTCCTTATTTCCCATAT+TGG - Chr5:18737279-18737298 MsG0580025446.01.T02:intron 40.0%
! TAGTAATTTGGAGTTCAGCC+AGG + Chr5:18735877-18735896 None:intergenic 40.0%
! TCCCTTACCTCTTCCATTTT+TGG - Chr5:18738416-18738435 MsG0580025446.01.T02:CDS 40.0%
! TCTTCATTCGACGGTTCTTT+TGG + Chr5:18738336-18738355 None:intergenic 40.0%
! TTGGTGATCATGAACTTCCT+TGG - Chr5:18738279-18738298 MsG0580025446.01.T02:intron 40.0%
!! ACATTCTGGTTCACAAGGAA+AGG + Chr5:18735905-18735924 None:intergenic 40.0%
!! ACTGTCTTTCTAGCTACAGA+GGG + Chr5:18736543-18736562 None:intergenic 40.0%
!! ATTCTGGTTCACAAGGAAAG+GGG + Chr5:18735903-18735922 None:intergenic 40.0%
!! CATTCTGGTTCACAAGGAAA+GGG + Chr5:18735904-18735923 None:intergenic 40.0%
!! CCCTTACCTCTTCCATTTTT+GGG - Chr5:18738417-18738436 MsG0580025446.01.T02:CDS 40.0%
!! CCTTACCTCTTCCATTTTTG+GGG - Chr5:18738418-18738437 MsG0580025446.01.T02:CDS 40.0%
!! CGGAGATTGTTGATGATTCT+AGG + Chr5:18736281-18736300 None:intergenic 40.0%
ACATTGATATGTAGGAGCCG+GGG - Chr5:18737259-18737278 MsG0580025446.01.T02:intron 45.0%
AGAGTCCTGTAAGTGTAGCT+CGG - Chr5:18737221-18737240 MsG0580025446.01.T02:intron 45.0%
ATGCTTGATCGCGAACAAGT+CGG + Chr5:18736301-18736320 None:intergenic 45.0%
CCCCAAAAATGGAAGAGGTA+AGG + Chr5:18738421-18738440 None:intergenic 45.0%
CTGAAAGAGGAAATGGGGTT+AGG + Chr5:18735426-18735445 None:intergenic 45.0%
GAAGTCCCCAAAAATGGAAG+AGG + Chr5:18738426-18738445 None:intergenic 45.0%
GACATTGATATGTAGGAGCC+GGG - Chr5:18737258-18737277 MsG0580025446.01.T02:intron 45.0%
GGAAAGGGGTCCTAGTAATT+TGG + Chr5:18735889-18735908 None:intergenic 45.0%
GGACATTGATATGTAGGAGC+CGG - Chr5:18737257-18737276 MsG0580025446.01.T02:intron 45.0%
TCACTAGGCGTCAGTTTATC+TGG - Chr5:18736244-18736263 MsG0580025446.01.T02:intron 45.0%
TGAAAAGGGAAGGAGAGAGA+TGG + Chr5:18735374-18735393 None:intergenic 45.0%
TGTGTAAGATATGGCTAGCG+AGG - Chr5:18737193-18737212 MsG0580025446.01.T02:intron 45.0%
! AAATCAGCAAAAGCACGCTC+TGG + Chr5:18738234-18738253 None:intergenic 45.0%
! CTGGAGTACTCTCTTGTGTA+GGG - Chr5:18737752-18737771 MsG0580025446.01.T02:intron 45.0%
! CTTGAGATTTGAAGGTGTGG+CGG + Chr5:18735343-18735362 None:intergenic 45.0%
! TAATTTGGAGTTCAGCCAGG+AGG + Chr5:18735874-18735893 None:intergenic 45.0%
! TCTGGAGTACTCTCTTGTGT+AGG - Chr5:18737751-18737770 MsG0580025446.01.T02:intron 45.0%
! TTGTGTAGGGACTGCAGTTT+TGG - Chr5:18737765-18737784 MsG0580025446.01.T02:intron 45.0%
!! AGAGAGTACTCCAGAAAGGA+AGG + Chr5:18737746-18737765 None:intergenic 45.0%
!! CACAAGAGAGTACTCCAGAA+AGG + Chr5:18737750-18737769 None:intergenic 45.0%
!! CACTGTCTTTCTAGCTACAG+AGG + Chr5:18736544-18736563 None:intergenic 45.0%
!! CCGTTGAAGACGGATTGTTT+AGG - Chr5:18735796-18735815 MsG0580025446.01.T02:intron 45.0%
!! CTTTATTGACTTGGATCCGG+AGG + Chr5:18737994-18738013 None:intergenic 45.0%
!! GTAGTTTACATGGCTCTGGT+GGG - Chr5:18737703-18737722 MsG0580025446.01.T02:intron 45.0%
AAGACCTGTTACGCGCTCTT+TGG - Chr5:18735307-18735326 MsG0580025446.01.T02:three_prime_UTR 50.0%
AAGATCCTGCACAAGGATGG+AGG + Chr5:18738208-18738227 None:intergenic 50.0%
ACCAACCGAGCTACACTTAC+AGG + Chr5:18737229-18737248 None:intergenic 50.0%
CGCCACACCTTCAAATCTCA+AGG - Chr5:18735341-18735360 MsG0580025446.01.T02:three_prime_UTR 50.0%
CTGCAATGTGGTGCTTCACT+TGG - Chr5:18738260-18738279 MsG0580025446.01.T02:intron 50.0%
GCAGGTAGTTTACATGGCTC+TGG - Chr5:18737699-18737718 MsG0580025446.01.T02:intron 50.0%
GGTGACAGTGTCTCATGATC+AGG + Chr5:18736463-18736482 None:intergenic 50.0%
GTCTTGTGCATCCTTTGTGG+TGG + Chr5:18735292-18735311 None:intergenic 50.0%
TCCTGTAAGTGTAGCTCGGT+TGG - Chr5:18737225-18737244 MsG0580025446.01.T02:intron 50.0%
! CAGGTCTTGTGCATCCTTTG+TGG + Chr5:18735295-18735314 None:intergenic 50.0%
! TGTTTTCACCGCTCTCCTTC+AGG - Chr5:18735472-18735491 MsG0580025446.01.T02:CDS 50.0%
!! GGTAGTTTACATGGCTCTGG+TGG - Chr5:18737702-18737721 MsG0580025446.01.T02:intron 50.0%
CGCAAGATCCTGCACAAGGA+TGG + Chr5:18738211-18738230 None:intergenic 55.0%
GAGAGCGGTGAAAACAGCGA+AGG + Chr5:18735468-18735487 None:intergenic 55.0%
GGGAAGAACCTGAAGGAGAG+CGG + Chr5:18735483-18735502 None:intergenic 55.0%
TTGGTCCTCCATCCTTGTGC+AGG - Chr5:18738200-18738219 MsG0580025446.01.T02:intron 55.0%
! CAGACCAAAGAGCGCGTAAC+AGG + Chr5:18735314-18735333 None:intergenic 55.0%
!! GTAGGGACTGCAGTTTTGGC+TGG - Chr5:18737769-18737788 MsG0580025446.01.T02:intron 55.0%
!! TAGCTCGGTTGGTAGCTCCA+TGG - Chr5:18737236-18737255 MsG0580025446.01.T02:intron 55.0%
CTGGCGCAAGATCCTGCACA+AGG + Chr5:18738215-18738234 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr5 gene 18735186 18738531 18735186 ID=MsG0580025446.01;Name=MsG0580025446.01
Chr5 mRNA 18735186 18738531 18735186 ID=MsG0580025446.01.T01;Parent=MsG0580025446.01;Name=MsG0580025446.01.T01;_AED=0.49;_eAED=0.49;_QI=63|0.75|0.8|1|0|0|5|226|156
Chr5 exon 18735687 18735823 18735687 ID=MsG0580025446.01.T01:exon:28628;Parent=MsG0580025446.01.T01
Chr5 five_prime_UTR 18738469 18738531 18738469 ID=MsG0580025446.01.T01:five_prime_utr;Parent=MsG0580025446.01.T01
Chr5 CDS 18738355 18738468 18738355 ID=MsG0580025446.01.T01:cds;Parent=MsG0580025446.01.T01
Chr5 CDS 18738224 18738271 18738224 ID=MsG0580025446.01.T01:cds;Parent=MsG0580025446.01.T01
Chr5 CDS 18735927 18736014 18735927 ID=MsG0580025446.01.T01:cds;Parent=MsG0580025446.01.T01
Chr5 CDS 18735687 18735823 18735687 ID=MsG0580025446.01.T01:cds;Parent=MsG0580025446.01.T01
Chr5 CDS 18735412 18735495 18735412 ID=MsG0580025446.01.T01:cds;Parent=MsG0580025446.01.T01
Chr5 three_prime_UTR 18735186 18735411 18735186 ID=MsG0580025446.01.T01:three_prime_utr;Parent=MsG0580025446.01.T01
Chr5 mRNA 18735186 18738531 18735186 ID=MsG0580025446.01.T02;Parent=MsG0580025446.01;Name=MsG0580025446.01.T02;_AED=0.50;_eAED=0.50;_QI=63|1|1|1|0|0|5|226|125
Chr5 exon 18735687 18735730 18735687 ID=MsG0580025446.01.T02:exon:28630;Parent=MsG0580025446.01.T02
Chr5 five_prime_UTR 18738469 18738531 18738469 ID=MsG0580025446.01.T02:five_prime_utr;Parent=MsG0580025446.01.T02
Chr5 CDS 18738355 18738468 18738355 ID=MsG0580025446.01.T02:cds;Parent=MsG0580025446.01.T02
Chr5 CDS 18738224 18738271 18738224 ID=MsG0580025446.01.T02:cds;Parent=MsG0580025446.01.T02
Chr5 CDS 18735927 18736014 18735927 ID=MsG0580025446.01.T02:cds;Parent=MsG0580025446.01.T02
Chr5 CDS 18735687 18735730 18735687 ID=MsG0580025446.01.T02:cds;Parent=MsG0580025446.01.T02
Chr5 CDS 18735412 18735495 18735412 ID=MsG0580025446.01.T02:cds;Parent=MsG0580025446.01.T02
Chr5 three_prime_UTR 18735186 18735411 18735186 ID=MsG0580025446.01.T02:three_prime_utr;Parent=MsG0580025446.01.T02
Chr5 mRNA 18735432 18735452 18735432 ID=MsG0580025446.01.T03;Parent=MsG0580025446.01;Name=MsG0580025446.01.T03;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|0|1|0|6
Chr5 exon 18735432 18735452 18735432 ID=MsG0580025446.01.T03:exon:28631;Parent=MsG0580025446.01.T03
Chr5 CDS 18735432 18735452 18735432 ID=MsG0580025446.01.T03:cds;Parent=MsG0580025446.01.T03
Gene Sequence

>MsG0580025446.01.T02

ATGGCAAAGCCGTCGTCTTCTTCATCTTCATCTTCTTCTTCCACCACAAAGGATGCACAAGACCTGTTACGCGCTCTTTGGTCTGCATATTCCGCCACACCTTCAAATCTCAAGATCATTGATCTCTATGTTTCCTTCGCTGTTTTCACCGCTCTCCTTCAGGTAGTTTACATGGCTCTGGTGGGAACATTTCCATTTAACTCCTTCCTTTCTGGAGTACTCTCTTGTGTAGGGACTGCAGTTTTGGCTGTTTGCCTCCGGATCCAAGTCAATAAAGAGAACAAGGAATTCAAGGATCTTGCGCCAGAGCGTGCTTTTGCTGATTTTGTTCTCTGCAATGTGGTGCTTCACTTGGTGATCATGAACTTCCTTGGTTAA

>MsG0580025446.01.T03

ATGTGGTGCTTCACTTGGTGA

>MsG0580025446.01.T01

ATGGCAAAGCCGTCGTCTTCTTCATCTTCATCTTCTTCTTCCACCACAAAGGATGCACAAGACCTGTTACGCGCTCTTTGGTCTGCATATTCCGCCACACCTTCAAATCTCAAGATCATTGATCTCTATGTTTCCTTCGCTGTTTTCACCGCTCTCCTTCAGGTAGTTTACATGGCTCTGGTGGGAACATTTCCATTTAACTCCTTCCTTTCTGGAGTACTCTCTTGTGTAGGGACTGCAGTTTTGGCTGATTCAAATGAGGCCTCAATTCCTACTAGATACATGTGCCTAAATTTAGTTTTCGTCTTACTTATCTTTGTTATCATCGTTTATTTTGAATCAGTTTGCCTCCGGATCCAAGTCAATAAAGAGAACAAGGAATTCAAGGATCTTGCGCCAGAGCGTGCTTTTGCTGATTTTGTTCTCTGCAATGTGGTGCTTCACTTGGTGATCATGAACTTCCTTGGTTAA
Protein sequence

>MsG0580025446.01.T02

MAKPSSSSSSSSSSTTKDAQDLLRALWSAYSATPSNLKIIDLYVSFAVFTALLQVVYMALVGTFPFNSFLSGVLSCVGTAVLAVCLRIQVNKENKEFKDLAPERAFADFVLCNVVLHLVIMNFLG*

>MsG0580025446.01.T03

MWCFTW*

>MsG0580025446.01.T01

MAKPSSSSSSSSSSTTKDAQDLLRALWSAYSATPSNLKIIDLYVSFAVFTALLQVVYMALVGTFPFNSFLSGVLSCVGTAVLADSNEASIPTRYMCLNLVFVLLIFVIIVYFESVCLRIQVNKENKEFKDLAPERAFADFVLCNVVLHLVIMNFLG*