AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005219.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005219.01.T01 MTR_1g095250 98.458 389 6 0 6 394 48 436 0.0 796
MsG0180005219.01.T01 MTR_0368s0020 91.837 49 4 0 182 230 83 131 1.77e-24 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005219.01.T01 AT1G48850 85.488 379 55 0 5 383 47 425 0.0 694
MsG0180005219.01.T01 AT1G48850 85.942 313 44 0 5 317 47 359 0.0 580
MsG0180005219.01.T01 AT1G48850 85.942 313 44 0 5 317 47 359 0.0 580

Find 118 sgRNAs with CRISPR-Local

Find 560 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGTATCAGTCTCCTTTC+TGG 0.119746 1:+88723592 None:intergenic
CACTTCTTCTGTTTCTAATT+TGG 0.135458 1:+88716543 None:intergenic
ATCATCTTCTCTGCATATTC+AGG 0.226636 1:+88719948 None:intergenic
GCGAGATGTCATTAGCTTAT+AGG 0.246076 1:-88723293 MsG0180005219.01.T01:CDS
TTGGACTGCATGTCGTATTC+TGG 0.254762 1:-88716389 MsG0180005219.01.T01:three_prime_UTR
TCCTTAAGAGATCCAGTTCT+TGG 0.259401 1:-88716408 MsG0180005219.01.T01:three_prime_UTR
TACATATGGGAACCACTTTC+GGG 0.279701 1:-88723957 MsG0180005219.01.T01:CDS
CAATTTGGTAGTGGGTTTGC+AGG 0.291322 1:-88718213 MsG0180005219.01.T01:intron
CACTTTCGGGTTACAACATA+TGG 0.302913 1:-88723944 MsG0180005219.01.T01:CDS
CATGTATCAGTCTCCTTTCT+GGG 0.318592 1:+88723593 None:intergenic
TTCATTATTTCTCAGGGTCT+TGG 0.321630 1:-88718309 MsG0180005219.01.T01:intron
GTACATATGGGAACCACTTT+CGG 0.342196 1:-88723958 MsG0180005219.01.T01:CDS
TTTCCTCTTTGATCAGTATT+GGG 0.342486 1:+88723425 None:intergenic
GCTTCAAGTTTGTCAAATAC+TGG 0.357310 1:+88718282 None:intergenic
ATTTCCTCTTTGATCAGTAT+TGG 0.358775 1:+88723424 None:intergenic
CTCAGATAAAATCTTCATTC+TGG 0.368408 1:-88716479 MsG0180005219.01.T01:three_prime_UTR
CCTTTCTGGGAGTTGTAATT+CGG 0.369236 1:+88723606 None:intergenic
CGGGCAGCTGGGAGTACATA+TGG 0.371354 1:-88723971 MsG0180005219.01.T01:CDS
GTGTTCACTCCCAGTCAAAA+AGG 0.378540 1:+88718063 None:intergenic
TCATTCTGGCTAGTGTTTAG+TGG 0.379236 1:-88716465 MsG0180005219.01.T01:three_prime_UTR
TGTTTCAATAAATGAAGCTT+TGG 0.379583 1:-88716138 MsG0180005219.01.T01:three_prime_UTR
ACCATTGGAAGGGTTGCTTC+TGG 0.385048 1:-88723103 MsG0180005219.01.T01:CDS
GAAATAATTAACATGAGAAT+AGG 0.385678 1:-88717844 MsG0180005219.01.T01:CDS
CATGTTAATTATTTCTCCAT+TGG 0.386598 1:+88717852 None:intergenic
AATTGAAAACCCTTAGTTGC+GGG 0.393669 1:+88718231 None:intergenic
TTCTCTGCATATTCAGGGTC+TGG 0.396812 1:+88719954 None:intergenic
TTTACAGAGATTCGGGCAGC+TGG 0.397683 1:-88723983 MsG0180005219.01.T01:CDS
CTCATGGTCAATTAAGTCTT+CGG 0.397981 1:+88721193 None:intergenic
TGGGTGCATATATCAGTAAT+TGG 0.408539 1:-88716503 MsG0180005219.01.T01:three_prime_UTR
TATGTCATTGCCCGCAACTA+AGG 0.414702 1:-88718241 MsG0180005219.01.T01:CDS
GTGCCTTTCTGAAAATGAAA+TGG 0.415398 1:-88716523 MsG0180005219.01.T01:exon
GGTACTTGTGGACCAATTGA+TGG 0.418936 1:-88716626 MsG0180005219.01.T01:CDS
TCCAAGAACTGGATCTCTTA+AGG 0.423067 1:+88716407 None:intergenic
TCATGGTCAATTAAGTCTTC+GGG 0.427778 1:+88721194 None:intergenic
GTATGGTGTCAGATCAGTTC+AGG 0.431140 1:-88723238 MsG0180005219.01.T01:intron
ATACATATATATATGTTTGC+TGG 0.443980 1:-88716363 MsG0180005219.01.T01:three_prime_UTR
AAACCGCTCTGGTGGGATAC+AGG 0.446252 1:-88717993 MsG0180005219.01.T01:intron
GGTAGAGGCCATGGTAGCTT+TGG 0.452564 1:-88716647 MsG0180005219.01.T01:CDS
TGACAAACTTGAAGCTGAGT+TGG 0.456051 1:-88718274 MsG0180005219.01.T01:CDS
ACGACATGCAGTCCAAGAAC+TGG 0.457953 1:+88716396 None:intergenic
GCAACCTATGACATGAAGTA+TGG 0.467320 1:-88723255 MsG0180005219.01.T01:CDS
GTGCATGTTGTGCCATCAAT+TGG 0.469901 1:+88716614 None:intergenic
GTTGTAATTCGGCTTTGACC+TGG 0.476712 1:+88723617 None:intergenic
CAGTATTGGGCACAAATACA+TGG 0.482313 1:+88723438 None:intergenic
TTGGGCACAAATACATGGAT+TGG 0.483473 1:+88723443 None:intergenic
TGTTTCTAATTTGGCTGACA+AGG 0.491775 1:+88716552 None:intergenic
GGTGTTGGATGTGTCATTGA+TGG 0.495772 1:-88723905 MsG0180005219.01.T01:CDS
CCGAATTACAACTCCCAGAA+AGG 0.500551 1:-88723606 MsG0180005219.01.T01:CDS
GAATCTCATGGAGGAGGTGT+TGG 0.513832 1:-88723920 MsG0180005219.01.T01:CDS
TGAGACACTGACACTTGATC+AGG 0.515093 1:-88721174 MsG0180005219.01.T01:intron
AACTCCTATATTTAGGGTGG+TGG 0.515942 1:-88723145 MsG0180005219.01.T01:intron
GGGCAGCTGGGAGTACATAT+GGG 0.522096 1:-88723970 MsG0180005219.01.T01:CDS
CATGGTAGCTTTGGTACTTG+TGG 0.522487 1:-88716638 MsG0180005219.01.T01:CDS
TCATCTTCTCTGCATATTCA+GGG 0.523950 1:+88719949 None:intergenic
GGCTGAGATACCAACCTCTC+GGG 0.524544 1:+88717040 None:intergenic
TTCTTGTAAATCAAAGTTCG+CGG 0.527748 1:+88716576 None:intergenic
TGCCTTTCTGAAAATGAAAT+GGG 0.530857 1:-88716522 MsG0180005219.01.T01:exon
TTAATTGCAGGAGTTACTAC+AGG 0.532875 1:-88723470 MsG0180005219.01.T01:intron
GATACATGTAAAATACTCTC+AGG 0.533691 1:-88723578 MsG0180005219.01.T01:CDS
GTTCTTGTGTATAGGAGGCC+AGG 0.534576 1:-88723635 MsG0180005219.01.T01:intron
TGTCATAGGTTGCATCCGCA+TGG 0.536508 1:+88723265 None:intergenic
GACACCATACTTCATGTCAT+AGG 0.537696 1:+88723251 None:intergenic
TCTTGTAAATCAAAGTTCGC+GGG 0.540183 1:+88716577 None:intergenic
ATGTCATTGCCCGCAACTAA+GGG 0.549586 1:-88718240 MsG0180005219.01.T01:CDS
TCTTCTGCTAGGGAAACCAT+TGG 0.551202 1:-88723118 MsG0180005219.01.T01:CDS
AATCAGGGTGGAATTTCCAA+TGG 0.556969 1:-88717868 MsG0180005219.01.T01:intron
GTGGTGGTAGATCTTCTGCT+AGG 0.562776 1:-88723129 MsG0180005219.01.T01:CDS
CCTGTGCACTTGAGAGACAT+AGG 0.564384 1:+88721226 None:intergenic
TGCAGCTGTACCCATGGTAG+AGG 0.565756 1:-88716662 MsG0180005219.01.T01:intron
CTCTGAAGCTGATATGCAAG+AGG 0.568295 1:-88723861 MsG0180005219.01.T01:CDS
AGCTACCATGGCCTCTACCA+TGG 0.568585 1:+88716651 None:intergenic
ACCAGAAGCAACCCTTCCAA+TGG 0.569596 1:+88723102 None:intergenic
CCTATGTCTCTCAAGTGCAC+AGG 0.572163 1:-88721226 MsG0180005219.01.T01:CDS
CAACCTCTCGGGACAACACA+GGG 0.572864 1:+88717051 None:intergenic
CATATGTTGTAACCCGAAAG+TGG 0.573615 1:+88723945 None:intergenic
ACAAGAACAAACCGCTCTGG+TGG 0.573699 1:-88718001 MsG0180005219.01.T01:CDS
ACAGGGATCATGACGACCAC+GGG 0.574091 1:+88717068 None:intergenic
TGCTAGGGAAACCATTGGAA+GGG 0.574957 1:-88723113 MsG0180005219.01.T01:CDS
TGTACCCATGGTAGAGGCCA+TGG 0.577435 1:-88716656 MsG0180005219.01.T01:CDS
GTCATAGGTTGCATCCGCAT+GGG 0.577755 1:+88723266 None:intergenic
CTGCTAGGGAAACCATTGGA+AGG 0.577836 1:-88723114 MsG0180005219.01.T01:CDS
GTGAAAGGTGATTCTGTTGG+TGG 0.578147 1:-88719903 MsG0180005219.01.T01:CDS
CAACAGAATCACCTTTCACT+CGG 0.578783 1:+88719907 None:intergenic
AGGACAAGAACAAACCGCTC+TGG 0.581332 1:-88718004 MsG0180005219.01.T01:CDS
TGGTGGTAGATCTTCTGCTA+GGG 0.582067 1:-88723128 MsG0180005219.01.T01:CDS
ACAACATATGGAGAATCTCA+TGG 0.584104 1:-88723932 MsG0180005219.01.T01:CDS
TTATATAGATCAAAATGGAA+AGG 0.585581 1:-88718029 MsG0180005219.01.T01:CDS
GATCAAGTGTCAGTGTCTCA+TGG 0.586576 1:+88721177 None:intergenic
ATTGATGCTGTCCGAGTGAA+AGG 0.587265 1:-88719918 MsG0180005219.01.T01:CDS
GCTACCATGGCCTCTACCAT+GGG 0.587349 1:+88716652 None:intergenic
TGCATATCAGCTTCAGAGAG+AGG 0.589694 1:+88723866 None:intergenic
ATACTCTCAGGAGTTTCAGA+AGG 0.591870 1:-88723566 MsG0180005219.01.T01:intron
TTACAGAGATTCGGGCAGCT+GGG 0.592616 1:-88723982 MsG0180005219.01.T01:CDS
GCTTCAGAGAGAGGGAGGCG+AGG 0.596196 1:+88723875 None:intergenic
GCATATCAGCTTCAGAGAGA+GGG 0.596658 1:+88723867 None:intergenic
GAAGCAATCTACAGTGACTC+GGG 0.598566 1:-88717115 MsG0180005219.01.T01:CDS
GTGCCCAATACTGATCAAAG+AGG 0.603337 1:-88723428 MsG0180005219.01.T01:CDS
CACAAGTACCAAAGCTACCA+TGG 0.605561 1:+88716639 None:intergenic
CACAGGGATCATGACGACCA+CGG 0.605920 1:+88717067 None:intergenic
TGAACTTGCAGCTGTACCCA+TGG 0.607274 1:-88716668 MsG0180005219.01.T01:intron
TATGGAGAATCTCATGGAGG+AGG 0.607485 1:-88723926 MsG0180005219.01.T01:CDS
TAGGTTGCATCCGCATGGGA+AGG 0.607769 1:+88723270 None:intergenic
AGAAGCAATCTACAGTGACT+CGG 0.610730 1:-88717116 MsG0180005219.01.T01:CDS
CCAACCTCTCGGGACAACAC+AGG 0.611393 1:+88717050 None:intergenic
AGCTTATAGGCCTTCCCATG+CGG 0.616697 1:-88723280 MsG0180005219.01.T01:CDS
AAATTGAAAACCCTTAGTTG+CGG 0.624146 1:+88718230 None:intergenic
TCAGAGAGAGGGAGGCGAGG+AGG 0.627324 1:+88723878 None:intergenic
TGCAAGAGGATCTTGACAGA+AGG 0.632234 1:-88723847 MsG0180005219.01.T01:intron
CAAGAACAAACCGCTCTGGT+GGG 0.632701 1:-88718000 MsG0180005219.01.T01:CDS
CTTACTGTAATAGTCGATGT+CGG 0.643905 1:+88717814 None:intergenic
TATCAGCTTCAGAGAGAGGG+AGG 0.644707 1:+88723870 None:intergenic
TAGATCAAAATGGAAAGGTG+AGG 0.648351 1:-88718024 MsG0180005219.01.T01:CDS
CGAGTGAAAGGTGATTCTGT+TGG 0.682023 1:-88719906 MsG0180005219.01.T01:CDS
GAAACAGAGCTCATAGCCCG+TGG 0.694287 1:-88717084 MsG0180005219.01.T01:CDS
GTGTTGTAACATGCATTGTG+AGG 0.723456 1:-88719881 MsG0180005219.01.T01:CDS
GATCCCTGTGTTGTCCCGAG+AGG 0.731256 1:-88717054 MsG0180005219.01.T01:intron
ACATATGGAGAATCTCATGG+AGG 0.763629 1:-88723929 MsG0180005219.01.T01:CDS
ATACCTGTATCCCACCAGAG+CGG 0.816288 1:+88717990 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAATTAATATAA+AGG - Chr1:88723796-88723815 MsG0180005219.01.T01:intron 0.0%
!! AAAAATACTAATAAAATTCA+AGG + Chr1:88721021-88721040 None:intergenic 10.0%
!! AACATAAAACTTTAAATAAT+GGG + Chr1:88723139-88723158 None:intergenic 10.0%
!! ATATTTACTAAATTAATTTC+TGG + Chr1:88721368-88721387 None:intergenic 10.0%
!! CAAAAAAAAAAAAAATAACA+TGG + Chr1:88723829-88723848 None:intergenic 10.0%
!! TATACATTAATTAATATAGA+GGG + Chr1:88722563-88722582 None:intergenic 10.0%
!! TATTTAAATATCAAATAACA+GGG + Chr1:88721587-88721606 None:intergenic 10.0%
!! TTATTTAAATATCAAATAAC+AGG + Chr1:88721588-88721607 None:intergenic 10.0%
!!! AAAATTTCGTAATTTTTTAT+TGG - Chr1:88723429-88723448 MsG0180005219.01.T01:CDS 10.0%
!!! AATTTGTTAATTTGTTAATT+GGG - Chr1:88720922-88720941 MsG0180005219.01.T01:intron 10.0%
!!! ATTGTTTATATTTAAAATCA+GGG - Chr1:88722239-88722258 MsG0180005219.01.T01:intron 10.0%
!!! TAATTTGTTAATTTGTTAAT+TGG - Chr1:88720921-88720940 MsG0180005219.01.T01:intron 10.0%
!!! TATTGTTTATATTTAAAATC+AGG - Chr1:88722238-88722257 MsG0180005219.01.T01:intron 10.0%
!!! TTTAAGATAAAATGTATAAA+AGG - Chr1:88719671-88719690 MsG0180005219.01.T01:intron 10.0%
!!! TTTTATACATTTTATCTTAA+AGG + Chr1:88719672-88719691 None:intergenic 10.0%
!! ATACATTAATTAATATAGAG+GGG + Chr1:88722562-88722581 None:intergenic 15.0%
!! ATATAAAGTTACAAATCAAT+AGG + Chr1:88721658-88721677 None:intergenic 15.0%
!! ATGATTAAAACGAATATTAT+AGG + Chr1:88717640-88717659 None:intergenic 15.0%
!! CAACATAAAACTTTAAATAA+TGG + Chr1:88723140-88723159 None:intergenic 15.0%
!! GTATAAATAAATATCTCAAA+GGG - Chr1:88719582-88719601 MsG0180005219.01.T01:intron 15.0%
!! GTATACATTAATTAATATAG+AGG + Chr1:88722564-88722583 None:intergenic 15.0%
!! GTTGAAATTTAATAGAAAAT+CGG + Chr1:88723373-88723392 None:intergenic 15.0%
!! TAAAATAAGTAGTATGAATT+AGG + Chr1:88719913-88719932 None:intergenic 15.0%
!! TAAGAAATTTAACATTAGTA+TGG + Chr1:88717114-88717133 None:intergenic 15.0%
!! TATAAAGTTACAAATCAATA+GGG + Chr1:88721657-88721676 None:intergenic 15.0%
!! TATAAATAAATATCTCAAAG+GGG - Chr1:88719583-88719602 MsG0180005219.01.T01:intron 15.0%
!! TGATTAAAACGAATATTATA+GGG + Chr1:88717639-88717658 None:intergenic 15.0%
!! TGTATAAATAAATATCTCAA+AGG - Chr1:88719581-88719600 MsG0180005219.01.T01:intron 15.0%
!!! AATTTCTTATGTTTTTTAAC+AGG - Chr1:88717125-88717144 MsG0180005219.01.T01:intron 15.0%
!!! ATGTATTTTTTATAGTGAAT+TGG - Chr1:88723902-88723921 MsG0180005219.01.T01:CDS 15.0%
!!! CTCTTTTTGTATTTATTTAT+TGG - Chr1:88719825-88719844 MsG0180005219.01.T01:intron 15.0%
!!! GAATTTTATATAGATCAAAA+TGG - Chr1:88722088-88722107 MsG0180005219.01.T01:intron 15.0%
!! AAAATCCTTAAAAAATTTGC+AGG - Chr1:88717055-88717074 MsG0180005219.01.T01:CDS 20.0%
!! AAACATGTTAAACAGTTAAA+AGG + Chr1:88718819-88718838 None:intergenic 20.0%
!! AAAGACATAAATCTAATGTT+AGG - Chr1:88723326-88723345 MsG0180005219.01.T01:intron 20.0%
!! AAATAAATACAAAAAGAGCA+AGG + Chr1:88719823-88719842 None:intergenic 20.0%
!! AAATAATTCTGCAAGAAAAT+AGG - Chr1:88720305-88720324 MsG0180005219.01.T01:intron 20.0%
!! AATAATTCTGCAAGAAAATA+GGG - Chr1:88720306-88720325 MsG0180005219.01.T01:intron 20.0%
!! AATCATTAGATACAGTTATT+TGG + Chr1:88719781-88719800 None:intergenic 20.0%
!! ACATTAGATTTATGTCTTTA+TGG + Chr1:88723325-88723344 None:intergenic 20.0%
!! ACTGAGTTTAAATTTAACAA+AGG + Chr1:88719284-88719303 None:intergenic 20.0%
!! ATACATATATATATGTTTGC+TGG - Chr1:88723759-88723778 MsG0180005219.01.T01:intron 20.0%
!! ATTTGATACAACAATTTGTA+TGG - Chr1:88719540-88719559 MsG0180005219.01.T01:intron 20.0%
!! CAAGATACATATGAAAAATT+AGG - Chr1:88717533-88717552 MsG0180005219.01.T01:intron 20.0%
!! CTAAAAAAATTACATTGATC+AGG + Chr1:88721989-88722008 None:intergenic 20.0%
!! CTGTATTGTTCTTTAATTAA+TGG + Chr1:88717228-88717247 None:intergenic 20.0%
!! GAAATAATTAACATGAGAAT+AGG - Chr1:88722278-88722297 MsG0180005219.01.T01:intron 20.0%
!! TAGCTTAATGAAATCTTTAT+AGG - Chr1:88722034-88722053 MsG0180005219.01.T01:intron 20.0%
!! TCGTATAATTTATTAATTGC+AGG - Chr1:88716640-88716659 MsG0180005219.01.T01:CDS 20.0%
!! TGCAAATTTAATACTTGTAT+CGG + Chr1:88721530-88721549 None:intergenic 20.0%
!! TGTTCAGAAATATTCAATAA+AGG - Chr1:88716736-88716755 MsG0180005219.01.T01:intron 20.0%
!! TTATATAGATCAAAATGGAA+AGG - Chr1:88722093-88722112 MsG0180005219.01.T01:intron 20.0%
!!! AATACTTTTTTATGGACATT+TGG - Chr1:88719093-88719112 MsG0180005219.01.T01:intron 20.0%
!!! AATGCAAACAGTTTTATAAA+AGG + Chr1:88719014-88719033 None:intergenic 20.0%
!!! ACTTCTTCTTTCTTATTTAT+GGG - Chr1:88717312-88717331 MsG0180005219.01.T01:intron 20.0%
!!! ATATACTGGTTATTTTGTTT+TGG - Chr1:88717585-88717604 MsG0180005219.01.T01:intron 20.0%
!!! ATTTTATTGAAATGCTAGTA+AGG - Chr1:88716385-88716404 MsG0180005219.01.T01:three_prime_UTR 20.0%
!!! CTAATAAAATGTTGTACTTT+TGG - Chr1:88716787-88716806 MsG0180005219.01.T01:intron 20.0%
!!! CTTTAAAGAATAACATTGTA+AGG - Chr1:88716465-88716484 MsG0180005219.01.T01:three_prime_UTR 20.0%
!!! TAGAAACAACTAATTTGTTA+TGG + Chr1:88722168-88722187 None:intergenic 20.0%
!!! TATAGGAGATTATATTTTCT+GGG + Chr1:88718082-88718101 None:intergenic 20.0%
!!! TATCTAATGATTACTTTTCA+TGG - Chr1:88719789-88719808 MsG0180005219.01.T01:intron 20.0%
!!! TGAATTTTGAGTAATGTTTA+AGG - Chr1:88721104-88721123 MsG0180005219.01.T01:intron 20.0%
!!! TGTGACTTTTATTTCAAATT+AGG - Chr1:88721072-88721091 MsG0180005219.01.T01:intron 20.0%
!!! TTAAAATGGTTTTAAGTGAA+GGG + Chr1:88720693-88720712 None:intergenic 20.0%
!!! TTCACTTAAAACCATTTTAA+GGG - Chr1:88720693-88720712 MsG0180005219.01.T01:intron 20.0%
!!! TTTTATTGAAATGCTAGTAA+GGG - Chr1:88716386-88716405 MsG0180005219.01.T01:three_prime_UTR 20.0%
! AAGAACAATCTAATAGTGAT+AGG + Chr1:88721554-88721573 None:intergenic 25.0%
! AAGTGTTAAAAGTTGTGTAT+GGG - Chr1:88722482-88722501 MsG0180005219.01.T01:intron 25.0%
! AATACCAAGTTTCTATTGAA+AGG + Chr1:88717195-88717214 None:intergenic 25.0%
! AATTCATCCAGAAATATCAT+TGG - Chr1:88718847-88718866 MsG0180005219.01.T01:intron 25.0%
! ATAACCAGTATATTATAGAC+AGG + Chr1:88717578-88717597 None:intergenic 25.0%
! ATAATAGGAATGAGAGAAAA+AGG - Chr1:88721604-88721623 MsG0180005219.01.T01:intron 25.0%
! ATTAATATAGAGGGGATATA+AGG + Chr1:88722554-88722573 None:intergenic 25.0%
! ATTGAGCTAGTTATTGTTAT+GGG + Chr1:88717786-88717805 None:intergenic 25.0%
! ATTTCAGCTATAATGATCAA+AGG + Chr1:88717955-88717974 None:intergenic 25.0%
! CAAAATCATTAGTTGTAACA+TGG + Chr1:88719218-88719237 None:intergenic 25.0%
! GACAGCATTATTAAGAAAAT+GGG - Chr1:88719459-88719478 MsG0180005219.01.T01:intron 25.0%
! TAACCAGTATATTATAGACA+GGG + Chr1:88717577-88717596 None:intergenic 25.0%
! TAAGTGTTAAAAGTTGTGTA+TGG - Chr1:88722481-88722500 MsG0180005219.01.T01:intron 25.0%
! TAATGGGATGAAAATAAGAT+AGG + Chr1:88723123-88723142 None:intergenic 25.0%
! TACAAAAATGACCCTTAAAA+TGG + Chr1:88720707-88720726 None:intergenic 25.0%
! TAGAGGAATAATGTATAAGA+TGG - Chr1:88716362-88716381 MsG0180005219.01.T01:three_prime_UTR 25.0%
! TATTGAGCTAGTTATTGTTA+TGG + Chr1:88717787-88717806 None:intergenic 25.0%
! TCTCATTCAAATAGAGAAAA+TGG + Chr1:88722699-88722718 None:intergenic 25.0%
! TCTTTACAGTGTAATAAGTT+AGG - Chr1:88716913-88716932 MsG0180005219.01.T01:intron 25.0%
! TGAAATGATATAGAGTGAAA+TGG - Chr1:88717969-88717988 MsG0180005219.01.T01:intron 25.0%
! TGACAGCATTATTAAGAAAA+TGG - Chr1:88719458-88719477 MsG0180005219.01.T01:intron 25.0%
! TGAGTTTATTTAATTGCCAT+TGG + Chr1:88721426-88721445 None:intergenic 25.0%
! TGGCTTATTAGATAAAGAAT+TGG - Chr1:88718296-88718315 MsG0180005219.01.T01:CDS 25.0%
! TGTTTCAATAAATGAAGCTT+TGG - Chr1:88723984-88724003 MsG0180005219.01.T01:CDS 25.0%
! TTAACCTTTCAATAGAAACT+TGG - Chr1:88717188-88717207 MsG0180005219.01.T01:intron 25.0%
! TTACAATAGTTATGAGAAGA+CGG + Chr1:88716324-88716343 None:intergenic 25.0%
! TTCAATAGAAACTTGGTATT+GGG - Chr1:88717195-88717214 MsG0180005219.01.T01:intron 25.0%
! TTTCAATAGAAACTTGGTAT+TGG - Chr1:88717194-88717213 MsG0180005219.01.T01:intron 25.0%
!! AAATGACTTCATTATTTCTC+AGG - Chr1:88721806-88721825 MsG0180005219.01.T01:intron 25.0%
!! AATAACTAGCTCAATAGTTT+TGG - Chr1:88717791-88717810 MsG0180005219.01.T01:intron 25.0%
!! AATGACTTCATTATTTCTCA+GGG - Chr1:88721807-88721826 MsG0180005219.01.T01:intron 25.0%
!! ATACGTGATATAGAATTTTG+TGG - Chr1:88721386-88721405 MsG0180005219.01.T01:intron 25.0%
!! CAATACAAACATAAAGTACT+TGG + Chr1:88721751-88721770 None:intergenic 25.0%
!! CAATGACTTTTAGATGATTT+AGG - Chr1:88722912-88722931 MsG0180005219.01.T01:intron 25.0%
!! CACTTCTTCTTTCTTATTTA+TGG - Chr1:88717311-88717330 MsG0180005219.01.T01:intron 25.0%
!! CATGTTAATTATTTCTCCAT+TGG + Chr1:88722273-88722292 None:intergenic 25.0%
!! CTTCACTTAAAACCATTTTA+AGG - Chr1:88720692-88720711 MsG0180005219.01.T01:intron 25.0%
!! GCAACAAATTTTGTAGTTTT+TGG - Chr1:88723933-88723952 MsG0180005219.01.T01:CDS 25.0%
!! GTATAGGAGATTATATTTTC+TGG + Chr1:88718083-88718102 None:intergenic 25.0%
!! GTTACAACTAATGATTTTGT+CGG - Chr1:88719219-88719238 MsG0180005219.01.T01:intron 25.0%
!! GTTTATATTTAAAATCAGGG+TGG - Chr1:88722242-88722261 MsG0180005219.01.T01:intron 25.0%
!! TCATCGTGTTTTCAATATTA+GGG + Chr1:88717512-88717531 None:intergenic 25.0%
!! TTAATACTTGTATCGGTATA+TGG + Chr1:88721523-88721542 None:intergenic 25.0%
!! TTCATCGTGTTTTCAATATT+AGG + Chr1:88717513-88717532 None:intergenic 25.0%
!! TTTTATCGGGAAACTATATT+TGG - Chr1:88720374-88720393 MsG0180005219.01.T01:intron 25.0%
!!! AATGATATTTCTGGATGAAT+TGG + Chr1:88718848-88718867 None:intergenic 25.0%
!!! ATGTATTGATTTGGTAGTAA+AGG - Chr1:88719640-88719659 MsG0180005219.01.T01:intron 25.0%
!!! ATTATTTTTACTTGTCAGAG+AGG + Chr1:88720292-88720311 None:intergenic 25.0%
!!! CAATGTGAATGATTTGTTTT+AGG + Chr1:88717439-88717458 None:intergenic 25.0%
!!! CTAATAACTCTAAAACCTTT+TGG + Chr1:88718485-88718504 None:intergenic 25.0%
!!! CTACTTTTAATTCCATTTCA+TGG - Chr1:88719170-88719189 MsG0180005219.01.T01:intron 25.0%
!!! CTTAAAATGGTTTTAAGTGA+AGG + Chr1:88720694-88720713 None:intergenic 25.0%
!!! GTCAAGTAGTATTTTAAACA+TGG - Chr1:88719046-88719065 MsG0180005219.01.T01:intron 25.0%
!!! TGATGATGAATGTATTGATT+TGG - Chr1:88719631-88719650 MsG0180005219.01.T01:intron 25.0%
!!! TGTATTGATTTGGTAGTAAA+GGG - Chr1:88719641-88719660 MsG0180005219.01.T01:intron 25.0%
!!! TTAATTGCCATTGGTTTTTT+TGG + Chr1:88721417-88721436 None:intergenic 25.0%
!!! TTGTTAATTTGTTAATTGGG+AGG - Chr1:88720925-88720944 MsG0180005219.01.T01:intron 25.0%
!!! TTTGTTACTTTAAGCTTTAG+AGG - Chr1:88720979-88720998 MsG0180005219.01.T01:intron 25.0%
AAAAGTCCACTATATGAACA+TGG + Chr1:88718207-88718226 None:intergenic 30.0%
AAATTGAAAACCCTTAGTTG+CGG + Chr1:88721895-88721914 None:intergenic 30.0%
AACAAAAAATTGAGAGAGAG+GGG + Chr1:88718637-88718656 None:intergenic 30.0%
AACTATTGTAAAAAGCCCTT+TGG - Chr1:88716333-88716352 MsG0180005219.01.T01:three_prime_UTR 30.0%
AAGAACAATACAGAACTTCA+AGG - Chr1:88717235-88717254 MsG0180005219.01.T01:intron 30.0%
ACATCTGAACTCCTATATTT+AGG - Chr1:88716970-88716989 MsG0180005219.01.T01:intron 30.0%
ACCTAAATCAGCTAAAAATG+GGG + Chr1:88722876-88722895 None:intergenic 30.0%
AGAAACATTGCAGATACAAT+AGG + Chr1:88718168-88718187 None:intergenic 30.0%
AGAACAAAAAAAGGAAAGCT+GGG + Chr1:88718338-88718357 None:intergenic 30.0%
AGAACAATACAGAACTTCAA+GGG - Chr1:88717236-88717255 MsG0180005219.01.T01:intron 30.0%
ATAACCAAAACTACTAGATC+TGG + Chr1:88718435-88718454 None:intergenic 30.0%
ATAATGATCAAAGGTTCTCT+TGG + Chr1:88717946-88717965 None:intergenic 30.0%
ATAGGAAGGAGAACAAAAAA+AGG + Chr1:88718347-88718366 None:intergenic 30.0%
ATGGAGAAGAGTAATAGTTA+GGG + Chr1:88720740-88720759 None:intergenic 30.0%
ATTGTAAGGTTCTTGTGTAT+AGG - Chr1:88716479-88716498 MsG0180005219.01.T01:three_prime_UTR 30.0%
ATTTCCTCTTTGATCAGTAT+TGG + Chr1:88716701-88716720 None:intergenic 30.0%
ATTTCGGCCAAAACAATTAT+AGG + Chr1:88717613-88717632 None:intergenic 30.0%
CAAGAATGATCTATCATGTT+AGG - Chr1:88717149-88717168 MsG0180005219.01.T01:intron 30.0%
CAAGAGATTAGAACAAAGAT+GGG + Chr1:88720857-88720876 None:intergenic 30.0%
CACCTAAATCAGCTAAAAAT+GGG + Chr1:88722877-88722896 None:intergenic 30.0%
CACTATTAGATTGTTCTTTG+AGG - Chr1:88721556-88721575 MsG0180005219.01.T01:intron 30.0%
CAGTTATTTGGTCAAAATAC+AGG + Chr1:88719769-88719788 None:intergenic 30.0%
CATATTACACAAGATCAGTA+TGG + Chr1:88718571-88718590 None:intergenic 30.0%
CATCTGAACTCCTATATTTA+GGG - Chr1:88716971-88716990 MsG0180005219.01.T01:intron 30.0%
CATGCAAGTCGATATATAAA+GGG + Chr1:88721683-88721702 None:intergenic 30.0%
CATTATGAATGATAGCTGAT+AGG - Chr1:88716416-88716435 MsG0180005219.01.T01:three_prime_UTR 30.0%
CTAACATGATAGATCATTCT+TGG + Chr1:88717151-88717170 None:intergenic 30.0%
CTCAGATAAAATCTTCATTC+TGG - Chr1:88723643-88723662 MsG0180005219.01.T01:intron 30.0%
GAACAAAAAATTGAGAGAGA+GGG + Chr1:88718638-88718657 None:intergenic 30.0%
GAACAATATTACTCTCAATC+TGG + Chr1:88720143-88720162 None:intergenic 30.0%
GAATATTATAGGGACCATTT+CGG + Chr1:88717629-88717648 None:intergenic 30.0%
GAGTACATTTATTCGAAATG+TGG + Chr1:88719323-88719342 None:intergenic 30.0%
GATACATGTAAAATACTCTC+AGG - Chr1:88716544-88716563 MsG0180005219.01.T01:CDS 30.0%
GGTAAACATAAGTGTGAAAA+CGG + Chr1:88722617-88722636 None:intergenic 30.0%
GGTGATATTATGTGTTTGTT+AGG + Chr1:88717414-88717433 None:intergenic 30.0%
TAAAAAATTTGCAGGAACTG+AGG - Chr1:88717063-88717082 MsG0180005219.01.T01:CDS 30.0%
TAAAACTCTGTTGTCAATAG+TGG - Chr1:88720508-88720527 MsG0180005219.01.T01:intron 30.0%
TAACAGATTAAAGGAGTTCA+AGG + Chr1:88718744-88718763 None:intergenic 30.0%
TCAAGAGATTAGAACAAAGA+TGG + Chr1:88720858-88720877 None:intergenic 30.0%
TCTTCTTACTGCTATTAACT+GGG - Chr1:88716587-88716606 MsG0180005219.01.T01:CDS 30.0%
TGAACAAAAAATTGAGAGAG+AGG + Chr1:88718639-88718658 None:intergenic 30.0%
TGAGATAGTTGTAAGAAATG+AGG + Chr1:88717345-88717364 None:intergenic 30.0%
TGGGATATCAATGTTATCAA+TGG + Chr1:88718256-88718275 None:intergenic 30.0%
TTCTTCTTACTGCTATTAAC+TGG - Chr1:88716586-88716605 MsG0180005219.01.T01:CDS 30.0%
TTCTTGTAAATCAAAGTTCG+CGG + Chr1:88723549-88723568 None:intergenic 30.0%
TTGAAATGCATTCCATGAAA+TGG + Chr1:88719185-88719204 None:intergenic 30.0%
TTTATTAGCCACGTAAATCA+AGG + Chr1:88716775-88716794 None:intergenic 30.0%
TTTCCTCTTTGATCAGTATT+GGG + Chr1:88716700-88716719 None:intergenic 30.0%
TTTCGGCCAAAACAATTATA+GGG + Chr1:88717612-88717631 None:intergenic 30.0%
! AAAACCAGATCTAGTAGTTT+TGG - Chr1:88718428-88718447 MsG0180005219.01.T01:intron 30.0%
! AAGTAGTTAGTTGGTTAGTT+GGG + Chr1:88717369-88717388 None:intergenic 30.0%
! CAAATTTTTACCATTCCAAC+TGG - Chr1:88719486-88719505 MsG0180005219.01.T01:intron 30.0%
! CAGAATGAAGATTTTATCTG+AGG + Chr1:88723645-88723664 None:intergenic 30.0%
! GAAATCCTGTATTTTACACA+GGG + Chr1:88720671-88720690 None:intergenic 30.0%
! GAATTCTTTAGAGACATGAA+TGG + Chr1:88717839-88717858 None:intergenic 30.0%
! GATTTTGTCGGAAGAAATTT+TGG - Chr1:88719231-88719250 MsG0180005219.01.T01:intron 30.0%
! GTTTTCAATATTAGGGAACT+TGG + Chr1:88717505-88717524 None:intergenic 30.0%
! TATGTGTTTGTTAGGACATT+TGG + Chr1:88717406-88717425 None:intergenic 30.0%
! TGACTTTTAGATGATTTAGG+TGG - Chr1:88722915-88722934 MsG0180005219.01.T01:intron 30.0%
! TGCCTTTCTGAAAATGAAAT+GGG - Chr1:88723600-88723619 MsG0180005219.01.T01:CDS 30.0%
! TTTATAGGTACCTTTTTGAC+TGG - Chr1:88722049-88722068 MsG0180005219.01.T01:intron 30.0%
! TTTGGTCCCTATAATTGTTT+TGG - Chr1:88717603-88717622 MsG0180005219.01.T01:intron 30.0%
!! AAAGTATTTTCCCAGTAGAT+TGG + Chr1:88723283-88723302 None:intergenic 30.0%
!! CACTTCTTCTGTTTCTAATT+TGG + Chr1:88723582-88723601 None:intergenic 30.0%
!! GTATTGATTTGGTAGTAAAG+GGG - Chr1:88719642-88719661 MsG0180005219.01.T01:intron 30.0%
!! TTAGATTGTTCTTTGAGGTA+TGG - Chr1:88721561-88721580 MsG0180005219.01.T01:intron 30.0%
!! TTATAGGTACCTTTTTGACT+GGG - Chr1:88722050-88722069 MsG0180005219.01.T01:intron 30.0%
!! TTTCTTTTCTAGTGATGAGA+AGG + Chr1:88723412-88723431 None:intergenic 30.0%
!! TTTGGCTTTCTGAATTTCAA+CGG - Chr1:88720392-88720411 MsG0180005219.01.T01:intron 30.0%
!!! AGATCTAGTAGTTTTGGTTA+TGG - Chr1:88718434-88718453 MsG0180005219.01.T01:intron 30.0%
!!! AGATCTGGTTTTTGATATGA+TGG + Chr1:88718420-88718439 None:intergenic 30.0%
!!! AGATGAGATGGATTTTTTTG+TGG + Chr1:88720806-88720825 None:intergenic 30.0%
!!! ATGTTCATATAGTGGACTTT+TGG - Chr1:88718206-88718225 MsG0180005219.01.T01:intron 30.0%
!!! ATTTTTTTAGCAGTTGTGTC+TGG - Chr1:88721999-88722018 MsG0180005219.01.T01:intron 30.0%
!!! CAGTTCCTGCAAATTTTTTA+AGG + Chr1:88717063-88717082 None:intergenic 30.0%
!!! GATGAGATGGATTTTTTTGT+GGG + Chr1:88720805-88720824 None:intergenic 30.0%
!!! GTACTTTTGGATACTTTTTC+AGG - Chr1:88716800-88716819 MsG0180005219.01.T01:intron 30.0%
!!! GTGAATGATTTGTTTTAGGT+GGG + Chr1:88717435-88717454 None:intergenic 30.0%
!!! TATAATTGTTTTGGCCGAAA+TGG - Chr1:88717612-88717631 MsG0180005219.01.T01:intron 30.0%
!!! TGTGAATGATTTGTTTTAGG+TGG + Chr1:88717436-88717455 None:intergenic 30.0%
!!! TTTTTTTAGCAGTTGTGTCT+GGG - Chr1:88722000-88722019 MsG0180005219.01.T01:intron 30.0%
AAAAGTGATAACAACCACGA+GGG - Chr1:88720351-88720370 MsG0180005219.01.T01:intron 35.0%
AAACATTATCTCACCCTTTC+AGG + Chr1:88723224-88723243 None:intergenic 35.0%
AAGGTAAGATTCCAAACTCA+TGG + Chr1:88721480-88721499 None:intergenic 35.0%
AATTGAAAACCCTTAGTTGC+GGG + Chr1:88721894-88721913 None:intergenic 35.0%
ACAACATATGGAGAATCTCA+TGG - Chr1:88716190-88716209 MsG0180005219.01.T01:three_prime_UTR 35.0%
ACGACTGATGAGTATTACTA+AGG - Chr1:88719432-88719451 MsG0180005219.01.T01:intron 35.0%
ACTAATGCACATTTACCAGT+TGG + Chr1:88719504-88719523 None:intergenic 35.0%
AGCAAGATTACGCAAACAAA+AGG + Chr1:88722818-88722837 None:intergenic 35.0%
AGCTAAAACCATTAGTGTGA+TGG + Chr1:88718276-88718295 None:intergenic 35.0%
ATATCAAAAACCAATGCCAG+GGG - Chr1:88722420-88722439 MsG0180005219.01.T01:intron 35.0%
ATCATCTTCTCTGCATATTC+AGG + Chr1:88720177-88720196 None:intergenic 35.0%
CAAAACAAGATCAACTGTGT+AGG - Chr1:88722636-88722655 MsG0180005219.01.T01:intron 35.0%
CAAGTAGTTAGTTGGTTAGT+TGG + Chr1:88717370-88717389 None:intergenic 35.0%
CATATCAAAAACCAATGCCA+GGG - Chr1:88722419-88722438 MsG0180005219.01.T01:intron 35.0%
CCACCTAAATCAGCTAAAAA+TGG + Chr1:88722878-88722897 None:intergenic 35.0%
CCTAAATCAGCTAAAAATGG+GGG + Chr1:88722875-88722894 None:intergenic 35.0%
CTAAATCAGCTAAAAATGGG+GGG + Chr1:88722874-88722893 None:intergenic 35.0%
CTCATGGTCAATTAAGTCTT+CGG + Chr1:88718932-88718951 None:intergenic 35.0%
CTTACTGTAATAGTCGATGT+CGG + Chr1:88722311-88722330 None:intergenic 35.0%
CTTGGTAAGTGATCATATTC+TGG + Chr1:88717928-88717947 None:intergenic 35.0%
CTTTCAGGACAATGTTAACT+CGG + Chr1:88723209-88723228 None:intergenic 35.0%
GAAAAAGTTTCAGTTCACAG+AGG - Chr1:88719362-88719381 MsG0180005219.01.T01:intron 35.0%
GACTTAGCCAATGATATTTC+TGG + Chr1:88718857-88718876 None:intergenic 35.0%
GAGAACAAAAAAAGGAAAGC+TGG + Chr1:88718339-88718358 None:intergenic 35.0%
GAGTTAACATTGTCCTGAAA+GGG - Chr1:88723208-88723227 MsG0180005219.01.T01:intron 35.0%
GATGGAGAAGAGTAATAGTT+AGG + Chr1:88720741-88720760 None:intergenic 35.0%
GCAGATTTGACAACATTGTA+GGG + Chr1:88718105-88718124 None:intergenic 35.0%
GCATGCAAGTCGATATATAA+AGG + Chr1:88721684-88721703 None:intergenic 35.0%
GCTAAAACCATTAGTGTGAT+GGG + Chr1:88718275-88718294 None:intergenic 35.0%
GGAAACTCCAAAAAAACCAA+TGG - Chr1:88721407-88721426 MsG0180005219.01.T01:intron 35.0%
GGAAATGCCTATAAGATATC+AGG + Chr1:88721706-88721725 None:intergenic 35.0%
GGGTTTATCAAGTAGTTAGT+TGG + Chr1:88717378-88717397 None:intergenic 35.0%
GTGGTCATTAGATAGGAAAT+GGG + Chr1:88717287-88717306 None:intergenic 35.0%
TAAAAGTGATAACAACCACG+AGG - Chr1:88720350-88720369 MsG0180005219.01.T01:intron 35.0%
TACAACCCTGTGTAAAATAC+AGG - Chr1:88720663-88720682 MsG0180005219.01.T01:intron 35.0%
TACACAAGATCAGTATGGAT+AGG + Chr1:88718566-88718585 None:intergenic 35.0%
TAGATCAAAATGGAAAGGTG+AGG - Chr1:88722098-88722117 MsG0180005219.01.T01:intron 35.0%
TATTGTAAAAAGCCCTTTGG+AGG - Chr1:88716336-88716355 MsG0180005219.01.T01:three_prime_UTR 35.0%
TCAATGTTATCAATGGCGAA+TGG + Chr1:88718249-88718268 None:intergenic 35.0%
TCACCCTGTCTATAATATAC+TGG - Chr1:88717571-88717590 MsG0180005219.01.T01:intron 35.0%
TCATCTTCTCTGCATATTCA+GGG + Chr1:88720176-88720195 None:intergenic 35.0%
TCATGGTCAATTAAGTCTTC+GGG + Chr1:88718931-88718950 None:intergenic 35.0%
TCTTGTAAATCAAAGTTCGC+GGG + Chr1:88723548-88723567 None:intergenic 35.0%
TGATACAGCAAAAATCTGGA+AGG + Chr1:88721499-88721518 None:intergenic 35.0%
TGCAGATTTGACAACATTGT+AGG + Chr1:88718106-88718125 None:intergenic 35.0%
TGGATGATACAGCAAAAATC+TGG + Chr1:88721503-88721522 None:intergenic 35.0%
TGGGTGCATATATCAGTAAT+TGG - Chr1:88723619-88723638 MsG0180005219.01.T01:CDS 35.0%
TGGTTGAGCTAACAGATTAA+AGG + Chr1:88718753-88718772 None:intergenic 35.0%
TGTGGTCATTAGATAGGAAA+TGG + Chr1:88717288-88717307 None:intergenic 35.0%
TGTTAGGACATTTGGTAAGA+GGG + Chr1:88717398-88717417 None:intergenic 35.0%
TTAAACCTCTGTTGTCAAAG+CGG + Chr1:88721269-88721288 None:intergenic 35.0%
TTAATTGCAGGAGTTACTAC+AGG - Chr1:88716652-88716671 MsG0180005219.01.T01:CDS 35.0%
TTGACAACATTGTAGGGTAT+AGG + Chr1:88718099-88718118 None:intergenic 35.0%
TTGATATCCCATCACACTAA+TGG - Chr1:88718265-88718284 MsG0180005219.01.T01:CDS 35.0%
TTGCATGCCTGATATCTTAT+AGG - Chr1:88721696-88721715 MsG0180005219.01.T01:intron 35.0%
TTGGTTGCAAAACAATGCAA+AGG + Chr1:88721732-88721751 None:intergenic 35.0%
TTGTGCAAGTACTAGAACAA+GGG - Chr1:88718520-88718539 MsG0180005219.01.T01:intron 35.0%
TTGTTAGGACATTTGGTAAG+AGG + Chr1:88717399-88717418 None:intergenic 35.0%
TTGTTCTAGTACTTGCACAA+AGG + Chr1:88718520-88718539 None:intergenic 35.0%
TTTGTGCAAGTACTAGAACA+AGG - Chr1:88718519-88718538 MsG0180005219.01.T01:intron 35.0%
! AAGGGTTTTCAATTTGGTAG+TGG - Chr1:88721900-88721919 MsG0180005219.01.T01:intron 35.0%
! ACTATATGAACATGGTGTTG+CGG + Chr1:88718199-88718218 None:intergenic 35.0%
! AGACGGTGAGATAATTTTGA+AGG + Chr1:88716307-88716326 None:intergenic 35.0%
! ATTTTCCCAGTAGATTGGAT+CGG + Chr1:88723278-88723297 None:intergenic 35.0%
! CAACTCTAAGGAAGACAAAA+GGG + Chr1:88718052-88718071 None:intergenic 35.0%
! CAATGTTAACTCGGTTCTAA+AGG + Chr1:88723200-88723219 None:intergenic 35.0%
! CACCCATTTCATTTTCAGAA+AGG + Chr1:88723605-88723624 None:intergenic 35.0%
! GCAACTAAGGGTTTTCAATT+TGG - Chr1:88721894-88721913 MsG0180005219.01.T01:intron 35.0%
! GCTTCAAGTTTGTCAAATAC+TGG + Chr1:88721843-88721862 None:intergenic 35.0%
! GGAAATCCTGTATTTTACAC+AGG + Chr1:88720672-88720691 None:intergenic 35.0%
! GTGCCTTTCTGAAAATGAAA+TGG - Chr1:88723599-88723618 MsG0180005219.01.T01:CDS 35.0%
! TATCTAGGATTCCATGAGTT+TGG - Chr1:88721466-88721485 MsG0180005219.01.T01:intron 35.0%
! TGTTGCAGAAAAGCATGAAT+AGG + Chr1:88718365-88718384 None:intergenic 35.0%
! TGTTTCTAATTTGGCTGACA+AGG + Chr1:88723573-88723592 None:intergenic 35.0%
! TTCATTATTTCTCAGGGTCT+TGG - Chr1:88721813-88721832 MsG0180005219.01.T01:intron 35.0%
!! AAGAAAGAAGAAGTGTCATG+TGG + Chr1:88717306-88717325 None:intergenic 35.0%
!! AGGGTTTTCAATTTGGTAGT+GGG - Chr1:88721901-88721920 MsG0180005219.01.T01:intron 35.0%
!! CTACACAGTTGATCTTGTTT+TGG + Chr1:88722638-88722657 None:intergenic 35.0%
!! TTTTCTAGTGATGAGAAGGT+AGG + Chr1:88723408-88723427 None:intergenic 35.0%
!!! CCATTTTTAGCTGATTTAGG+TGG - Chr1:88722875-88722894 MsG0180005219.01.T01:intron 35.0%
!!! TCACACTAATGGTTTTAGCT+TGG - Chr1:88718276-88718295 MsG0180005219.01.T01:CDS 35.0%
!!! TCATATAGTGGACTTTTGGT+TGG - Chr1:88718210-88718229 MsG0180005219.01.T01:intron 35.0%
!!! TTTTTTAGCAGTTGTGTCTG+GGG - Chr1:88722001-88722020 MsG0180005219.01.T01:intron 35.0%
AACCATGACCTTGATTTACG+TGG - Chr1:88716764-88716783 MsG0180005219.01.T01:intron 40.0%
AATCAGGGTGGAATTTCCAA+TGG - Chr1:88722254-88722273 MsG0180005219.01.T01:intron 40.0%
AATCCGCATCAAACATGCAT+TGG + Chr1:88718662-88718681 None:intergenic 40.0%
AATTGAGAACCAGACCTAGT+AGG + Chr1:88717995-88718014 None:intergenic 40.0%
ACAAGATCAGTATGGATAGG+AGG + Chr1:88718563-88718582 None:intergenic 40.0%
ACATAAGTGTGAAAACGGTG+TGG + Chr1:88722612-88722631 None:intergenic 40.0%
ACATATATCCACACCAAACG+GGG + Chr1:88718795-88718814 None:intergenic 40.0%
ACATATGGAGAATCTCATGG+AGG - Chr1:88716193-88716212 MsG0180005219.01.T01:three_prime_UTR 40.0%
ACATGTATCAGTCTCCTTTC+TGG + Chr1:88716533-88716552 None:intergenic 40.0%
ACCATCATCTGATCAGTGTA+CGG - Chr1:88722745-88722764 MsG0180005219.01.T01:intron 40.0%
ACTGAAGAAGGTCTATGAGA+TGG + Chr1:88717762-88717781 None:intergenic 40.0%
ACTGCAAGTTGTTCAACTTG+AGG + Chr1:88717463-88717482 None:intergenic 40.0%
AGAAGCAATCTACAGTGACT+CGG - Chr1:88723006-88723025 MsG0180005219.01.T01:intron 40.0%
AGACAAAAGGGTTAGAAAGC+AGG + Chr1:88718040-88718059 None:intergenic 40.0%
AGGGGAGATATCTAGTAAGT+AGG + Chr1:88718619-88718638 None:intergenic 40.0%
AGGTCATTCTCGTCAAAACA+TGG - Chr1:88719691-88719710 MsG0180005219.01.T01:intron 40.0%
ATAAGTGTGAAAACGGTGTG+GGG + Chr1:88722610-88722629 None:intergenic 40.0%
ATACTCTCAGGAGTTTCAGA+AGG - Chr1:88716556-88716575 MsG0180005219.01.T01:CDS 40.0%
ATAGAGTGAAATGGCCTACT+AGG - Chr1:88717978-88717997 MsG0180005219.01.T01:intron 40.0%
ATCAGTGCTTTGTCTTGTAC+AGG - Chr1:88721959-88721978 MsG0180005219.01.T01:intron 40.0%
ATGTTGTCAAATCTGCACCA+TGG - Chr1:88718109-88718128 MsG0180005219.01.T01:intron 40.0%
ATTAAAGGAGTTCAAGGTCC+AGG + Chr1:88718738-88718757 None:intergenic 40.0%
ATTCCTCTATAGCCTCCAAA+GGG + Chr1:88716351-88716370 None:intergenic 40.0%
CAACAGAATCACCTTTCACT+CGG + Chr1:88720218-88720237 None:intergenic 40.0%
CAAGCAATATTACAGTCGCA+GGG + Chr1:88721336-88721355 None:intergenic 40.0%
CACATATATCCACACCAAAC+GGG + Chr1:88718796-88718815 None:intergenic 40.0%
CATAAGTGTGAAAACGGTGT+GGG + Chr1:88722611-88722630 None:intergenic 40.0%
CATATGTTGTAACCCGAAAG+TGG + Chr1:88716180-88716199 None:intergenic 40.0%
CATGTATCAGTCTCCTTTCT+GGG + Chr1:88716532-88716551 None:intergenic 40.0%
CCAAAAAGTAATGGCAAACC+AGG + Chr1:88720113-88720132 None:intergenic 40.0%
CCATATCAAAAACCAATGCC+AGG - Chr1:88722418-88722437 MsG0180005219.01.T01:intron 40.0%
CGAGTTAACATTGTCCTGAA+AGG - Chr1:88723207-88723226 MsG0180005219.01.T01:intron 40.0%
CGATGAAGAAGTTGTGTTTG+CGG + Chr1:88720780-88720799 None:intergenic 40.0%
CTGAACTCCTATATTTAGGG+TGG - Chr1:88716974-88716993 MsG0180005219.01.T01:intron 40.0%
CTGAAGAAGGTCTATGAGAT+GGG + Chr1:88717761-88717780 None:intergenic 40.0%
GACACCATACTTCATGTCAT+AGG + Chr1:88716874-88716893 None:intergenic 40.0%
GATAGGCAGCATTTCAGAAA+AGG + Chr1:88723106-88723125 None:intergenic 40.0%
GATCCAGAAGTCCATCAAAT+GGG + Chr1:88717727-88717746 None:intergenic 40.0%
GATGAGATGAGAAGATGAGA+TGG + Chr1:88720818-88720837 None:intergenic 40.0%
GCAACACCATGTTCATATAG+TGG - Chr1:88718198-88718217 MsG0180005219.01.T01:intron 40.0%
GCAACCTATGACATGAAGTA+TGG - Chr1:88716867-88716886 MsG0180005219.01.T01:intron 40.0%
GCACATATATCCACACCAAA+CGG + Chr1:88718797-88718816 None:intergenic 40.0%
GGACTAAAAGATGGTCTTTG+AGG + Chr1:88721312-88721331 None:intergenic 40.0%
GGTCATTCTCGTCAAAACAT+GGG - Chr1:88719692-88719711 MsG0180005219.01.T01:intron 40.0%
GTAAGGTTCTTGTGTATAGG+AGG - Chr1:88716482-88716501 MsG0180005219.01.T01:three_prime_UTR 40.0%
GTACATATGGGAACCACTTT+CGG - Chr1:88716164-88716183 MsG0180005219.01.T01:three_prime_UTR 40.0%
GTGTCATGTGGTCATTAGAT+AGG + Chr1:88717294-88717313 None:intergenic 40.0%
GTGTTGTAACATGCATTGTG+AGG - Chr1:88720241-88720260 MsG0180005219.01.T01:intron 40.0%
TACATATGGGAACCACTTTC+GGG - Chr1:88716165-88716184 MsG0180005219.01.T01:three_prime_UTR 40.0%
TATTCCTCTATAGCCTCCAA+AGG + Chr1:88716352-88716371 None:intergenic 40.0%
TCAAGCAATATTACAGTCGC+AGG + Chr1:88721337-88721356 None:intergenic 40.0%
TCACCAATGCATGTTTGATG+CGG - Chr1:88718656-88718675 MsG0180005219.01.T01:intron 40.0%
TCAGTGCTTTGTCTTGTACA+GGG - Chr1:88721960-88721979 MsG0180005219.01.T01:intron 40.0%
TCCAAGAACTGGATCTCTTA+AGG + Chr1:88723718-88723737 None:intergenic 40.0%
TCCTTAAGAGATCCAGTTCT+TGG - Chr1:88723714-88723733 MsG0180005219.01.T01:intron 40.0%
TCTACCACCACCCTAAATAT+AGG + Chr1:88716984-88717003 None:intergenic 40.0%
TGAAGAAGGTCTATGAGATG+GGG + Chr1:88717760-88717779 None:intergenic 40.0%
TGACAAACTTGAAGCTGAGT+TGG - Chr1:88721848-88721867 MsG0180005219.01.T01:intron 40.0%
TGAGCCAATTTGAAAGACTG+CGG + Chr1:88719979-88719998 None:intergenic 40.0%
TGCAAAACAATGCAAAGGAG+TGG + Chr1:88721727-88721746 None:intergenic 40.0%
TGCACATTTACCAGTTGGAA+TGG + Chr1:88719499-88719518 None:intergenic 40.0%
TGGTGGTTAGTAGAGTGATA+AGG + Chr1:88722525-88722544 None:intergenic 40.0%
TGGTTAGTAGAGTGATAAGG+AGG + Chr1:88722522-88722541 None:intergenic 40.0%
TGTGCAAGTACTAGAACAAG+GGG - Chr1:88718521-88718540 MsG0180005219.01.T01:intron 40.0%
TTAAAGGAGTTCAAGGTCCA+GGG + Chr1:88718737-88718756 None:intergenic 40.0%
TTGGGCACAAATACATGGAT+TGG + Chr1:88716682-88716701 None:intergenic 40.0%
TTGTAGTCAAGCCTGCTTAT+CGG - Chr1:88719135-88719154 MsG0180005219.01.T01:intron 40.0%
! AACTCCTATATTTAGGGTGG+TGG - Chr1:88716977-88716996 MsG0180005219.01.T01:intron 40.0%
! ACAATAGGTGTTGCAGTCAA+TGG + Chr1:88718153-88718172 None:intergenic 40.0%
! ATCTGCAATGTTTCTGCCAT+AGG - Chr1:88718173-88718192 MsG0180005219.01.T01:intron 40.0%
! ATTTTCTCTCTCTCAGCAAG+AGG - Chr1:88717873-88717892 MsG0180005219.01.T01:intron 40.0%
! CAGTATTGGGCACAAATACA+TGG + Chr1:88716687-88716706 None:intergenic 40.0%
! CCTTTCTGGGAGTTGTAATT+CGG + Chr1:88716519-88716538 None:intergenic 40.0%
! GAGGGGATATAAGGTTGATT+TGG + Chr1:88722545-88722564 None:intergenic 40.0%
! GCAACTCTAAGGAAGACAAA+AGG + Chr1:88718053-88718072 None:intergenic 40.0%
! GCAGAAAAGCATGAATAGGA+AGG + Chr1:88718361-88718380 None:intergenic 40.0%
! GCGAGATGTCATTAGCTTAT+AGG - Chr1:88716829-88716848 MsG0180005219.01.T01:intron 40.0%
! GCGTTGCGTTTTTCCATTTT+TGG + Chr1:88720549-88720568 None:intergenic 40.0%
! GGTTAGACATGCTGTGTTTT+CGG - Chr1:88722775-88722794 MsG0180005219.01.T01:intron 40.0%
! GTTAGACATGCTGTGTTTTC+GGG - Chr1:88722776-88722795 MsG0180005219.01.T01:intron 40.0%
! TCATTCTGGCTAGTGTTTAG+TGG - Chr1:88723657-88723676 MsG0180005219.01.T01:intron 40.0%
! TGTTTTCAGCTCCCATTTGA+TGG - Chr1:88717713-88717732 MsG0180005219.01.T01:intron 40.0%
! TTAGACATGCTGTGTTTTCG+GGG - Chr1:88722777-88722796 MsG0180005219.01.T01:intron 40.0%
!! AACAACCACGAGGGTTTTAT+CGG - Chr1:88720360-88720379 MsG0180005219.01.T01:intron 40.0%
!! ATTGTTATGGGCACTGAAGA+AGG + Chr1:88717774-88717793 None:intergenic 40.0%
!! CACTTTCGGGTTACAACATA+TGG - Chr1:88716178-88716197 MsG0180005219.01.T01:three_prime_UTR 40.0%
!! CTTTCTAGTTTCCGATAAGC+AGG + Chr1:88719149-88719168 None:intergenic 40.0%
!! GCTTTAGAGGCTTAAAGTGT+CGG - Chr1:88720992-88721011 MsG0180005219.01.T01:intron 40.0%
!! GGGATATAAGGTTGATTTGG+TGG + Chr1:88722542-88722561 None:intergenic 40.0%
!!! CCCCCATTTTTAGCTGATTT+AGG - Chr1:88722872-88722891 MsG0180005219.01.T01:intron 40.0%
!!! CCTGGCATTGGTTTTTGATA+TGG + Chr1:88722421-88722440 None:intergenic 40.0%
AACATCTGCATGCCAAGGAA+TGG + Chr1:88722845-88722864 None:intergenic 45.0%
AATGGCGAATGGCAGAGTAT+GGG + Chr1:88718238-88718257 None:intergenic 45.0%
AGCCACGTAAATCAAGGTCA+TGG + Chr1:88716769-88716788 None:intergenic 45.0%
ATGTAGCCGATCCAATCTAC+TGG - Chr1:88723269-88723288 MsG0180005219.01.T01:CDS 45.0%
ATGTCATTGCCCGCAACTAA+GGG - Chr1:88721882-88721901 MsG0180005219.01.T01:intron 45.0%
ATGTGAACATCTGCATGCCA+AGG + Chr1:88722850-88722869 None:intergenic 45.0%
ATTGATGCTGTCCGAGTGAA+AGG - Chr1:88720204-88720223 MsG0180005219.01.T01:intron 45.0%
CACAAGTACCAAAGCTACCA+TGG + Chr1:88723486-88723505 None:intergenic 45.0%
CAGGAATTCGACTTCAGAGA+TGG + Chr1:88720094-88720113 None:intergenic 45.0%
CATTTCCGCTTTGACAACAG+AGG - Chr1:88721261-88721280 MsG0180005219.01.T01:intron 45.0%
CCATCATCTGATCAGTGTAC+GGG - Chr1:88722746-88722765 MsG0180005219.01.T01:intron 45.0%
CCGAATTACAACTCCCAGAA+AGG - Chr1:88716516-88716535 MsG0180005219.01.T01:exon 45.0%
CGAGTGAAAGGTGATTCTGT+TGG - Chr1:88720216-88720235 MsG0180005219.01.T01:intron 45.0%
CGCAATTGCGGGTATAAAGT+GGG - Chr1:88720612-88720631 MsG0180005219.01.T01:intron 45.0%
CTGTTGTCAAAGCGGAAATG+CGG + Chr1:88721261-88721280 None:intergenic 45.0%
CTTGCCGCAGTCTTTCAAAT+TGG - Chr1:88719972-88719991 MsG0180005219.01.T01:CDS 45.0%
GAAGAAGGTCTATGAGATGG+GGG + Chr1:88717759-88717778 None:intergenic 45.0%
GAAGCAATCTACAGTGACTC+GGG - Chr1:88723007-88723026 MsG0180005219.01.T01:intron 45.0%
GAGAGAGAGAGAGAGGATAT+TGG + Chr1:88722335-88722354 None:intergenic 45.0%
GAGGTGAAAAGACTTACACG+TGG + Chr1:88720273-88720292 None:intergenic 45.0%
GAGTGAATTCACGAGTCACT+TGG - Chr1:88717898-88717917 MsG0180005219.01.T01:intron 45.0%
GATAGGAAATGGGAGCCTTT+CGG + Chr1:88717277-88717296 None:intergenic 45.0%
GATCAAGTGTCAGTGTCTCA+TGG + Chr1:88718948-88718967 None:intergenic 45.0%
GATCAGTATGGATAGGAGGA+TGG + Chr1:88718559-88718578 None:intergenic 45.0%
GCATATCAGCTTCAGAGAGA+GGG + Chr1:88716258-88716277 None:intergenic 45.0%
GCTGTGCTCTTTGGTTATCT+AGG - Chr1:88721451-88721470 MsG0180005219.01.T01:intron 45.0%
GGATCCAGAAGTCCATCAAA+TGG + Chr1:88717728-88717747 None:intergenic 45.0%
GGTACTTGTGGACCAATTGA+TGG - Chr1:88723496-88723515 MsG0180005219.01.T01:intron 45.0%
GTAGATTGCTTCTTCTGCAC+AGG + Chr1:88722999-88723018 None:intergenic 45.0%
GTGAAAGGTGATTCTGTTGG+TGG - Chr1:88720219-88720238 MsG0180005219.01.T01:intron 45.0%
GTGCATGTTGTGCCATCAAT+TGG + Chr1:88723511-88723530 None:intergenic 45.0%
GTGCCCAATACTGATCAAAG+AGG - Chr1:88716694-88716713 MsG0180005219.01.T01:intron 45.0%
GTGTTCACTCCCAGTCAAAA+AGG + Chr1:88722062-88722081 None:intergenic 45.0%
TAAGTGTGAAAACGGTGTGG+GGG + Chr1:88722609-88722628 None:intergenic 45.0%
TATGAGATGGGGGAAAGAGA+CGG + Chr1:88717749-88717768 None:intergenic 45.0%
TATGGAGAATCTCATGGAGG+AGG - Chr1:88716196-88716215 MsG0180005219.01.T01:three_prime_UTR 45.0%
TATGTCATTGCCCGCAACTA+AGG - Chr1:88721881-88721900 MsG0180005219.01.T01:intron 45.0%
TCTTCTGCTAGGGAAACCAT+TGG - Chr1:88717004-88717023 MsG0180005219.01.T01:intron 45.0%
TGAGACACTGACACTTGATC+AGG - Chr1:88718948-88718967 MsG0180005219.01.T01:intron 45.0%
TGATCAGTGTACGGGATGTA+TGG - Chr1:88722754-88722773 MsG0180005219.01.T01:intron 45.0%
TGCAAGAGGATCTTGACAGA+AGG - Chr1:88716275-88716294 MsG0180005219.01.T01:three_prime_UTR 45.0%
TGCATATCAGCTTCAGAGAG+AGG + Chr1:88716259-88716278 None:intergenic 45.0%
TGCTAGGGAAACCATTGGAA+GGG - Chr1:88717009-88717028 MsG0180005219.01.T01:intron 45.0%
TGGTGGTAGATCTTCTGCTA+GGG - Chr1:88716994-88717013 MsG0180005219.01.T01:intron 45.0%
TGTAGCCGATCCAATCTACT+GGG - Chr1:88723270-88723289 MsG0180005219.01.T01:CDS 45.0%
TGTCAAATCTGCACCATGGT+GGG - Chr1:88718113-88718132 MsG0180005219.01.T01:intron 45.0%
TGTGTTTGCGGCTGTGTATT+TGG + Chr1:88720768-88720787 None:intergenic 45.0%
TTCTCTGCATATTCAGGGTC+TGG + Chr1:88720171-88720190 None:intergenic 45.0%
TTGGACTGCATGTCGTATTC+TGG - Chr1:88723733-88723752 MsG0180005219.01.T01:intron 45.0%
TTGTCAAATCTGCACCATGG+TGG - Chr1:88718112-88718131 MsG0180005219.01.T01:intron 45.0%
! ATAGGTGTTGCAGTCAATGG+TGG + Chr1:88718150-88718169 None:intergenic 45.0%
! ATCTTGCTGCTTCCATTCCT+TGG - Chr1:88722830-88722849 MsG0180005219.01.T01:intron 45.0%
! GGTGTTGGATGTGTCATTGA+TGG - Chr1:88716217-88716236 MsG0180005219.01.T01:three_prime_UTR 45.0%
! GTATGGTGTCAGATCAGTTC+AGG - Chr1:88716884-88716903 MsG0180005219.01.T01:intron 45.0%
! GTCTGAACAGAAGAGCATGA+CGG + Chr1:88719947-88719966 None:intergenic 45.0%
! GTTGCGCTCAAGTTCTAACT+TGG - Chr1:88722452-88722471 MsG0180005219.01.T01:intron 45.0%
! GTTGTAATTCGGCTTTGACC+TGG + Chr1:88716508-88716527 None:intergenic 45.0%
! TGGAAGCTTGCTTACCAGTT+TGG - Chr1:88718454-88718473 MsG0180005219.01.T01:intron 45.0%
!! ACAACCACGAGGGTTTTATC+GGG - Chr1:88720361-88720380 MsG0180005219.01.T01:intron 45.0%
!! ACCAGTTTGGTGTCACCAAA+AGG - Chr1:88718467-88718486 MsG0180005219.01.T01:intron 45.0%
!! ACCTTTTGGTGACACCAAAC+TGG + Chr1:88718471-88718490 None:intergenic 45.0%
!! AGAGGAGGTTTTGGCAAAAG+TGG + Chr1:88718389-88718408 None:intergenic 45.0%
!! CAATTTGGTAGTGGGTTTGC+AGG - Chr1:88721909-88721928 MsG0180005219.01.T01:intron 45.0%
!! CATCTCTGAAGTCGAATTCC+TGG - Chr1:88720092-88720111 MsG0180005219.01.T01:intron 45.0%
!! CATGGTAGCTTTGGTACTTG+TGG - Chr1:88723484-88723503 MsG0180005219.01.T01:intron 45.0%
!! CTCTGAAGCTGATATGCAAG+AGG - Chr1:88716261-88716280 MsG0180005219.01.T01:three_prime_UTR 45.0%
!! GATATGATGGATGACTGCAG+AGG + Chr1:88718407-88718426 None:intergenic 45.0%
!! GGCTGTGTATTTGGTTCTGA+TGG + Chr1:88720759-88720778 None:intergenic 45.0%
!! TGTTTTCGGGGTAGCAATTG+AGG - Chr1:88722789-88722808 MsG0180005219.01.T01:intron 45.0%
!! TTATTTGATATTTAAATAAT+AGG - Chr1:88721589-88721608 MsG0180005219.01.T01:intron 5.0%
!!! TTATTTTTAATACTTTTTTA+TGG - Chr1:88719085-88719104 MsG0180005219.01.T01:intron 5.0%
AAGGTCCAGGGTTCGAATCT+TGG + Chr1:88718725-88718744 None:intergenic 50.0%
ACAAGAACAAACCGCTCTGG+TGG - Chr1:88722121-88722140 MsG0180005219.01.T01:intron 50.0%
ACCAGAAGCAACCCTTCCAA+TGG + Chr1:88717023-88717042 None:intergenic 50.0%
ACCATTGGAAGGGTTGCTTC+TGG - Chr1:88717019-88717038 MsG0180005219.01.T01:intron 50.0%
ACGACATGCAGTCCAAGAAC+TGG + Chr1:88723729-88723748 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + Chr1:88722340-88722359 None:intergenic 50.0%
AGCTTATAGGCCTTCCCATG+CGG - Chr1:88716842-88716861 MsG0180005219.01.T01:intron 50.0%
AGGACAAGAACAAACCGCTC+TGG - Chr1:88722118-88722137 MsG0180005219.01.T01:intron 50.0%
AGGCTGAGATACCAACCTCT+CGG + Chr1:88723086-88723105 None:intergenic 50.0%
ATACCTGTATCCCACCAGAG+CGG + Chr1:88722135-88722154 None:intergenic 50.0%
ATATCCACACCAAACGGGGA+GGG + Chr1:88718791-88718810 None:intergenic 50.0%
ATGGCGAATGGCAGAGTATG+GGG + Chr1:88718237-88718256 None:intergenic 50.0%
CAAGAACAAACCGCTCTGGT+GGG - Chr1:88722122-88722141 MsG0180005219.01.T01:intron 50.0%
CAATGGCGAATGGCAGAGTA+TGG + Chr1:88718239-88718258 None:intergenic 50.0%
CAGGGTTCGAATCTTGGCAA+GGG + Chr1:88718719-88718738 None:intergenic 50.0%
CCCGTACACTGATCAGATGA+TGG + Chr1:88722749-88722768 None:intergenic 50.0%
CCTATGTCTCTCAAGTGCAC+AGG - Chr1:88718896-88718915 MsG0180005219.01.T01:intron 50.0%
CCTGTGCACTTGAGAGACAT+AGG + Chr1:88718899-88718918 None:intergenic 50.0%
CTCATTTACTCCCCTGGCAT+TGG + Chr1:88722433-88722452 None:intergenic 50.0%
CTGCTAGGGAAACCATTGGA+AGG - Chr1:88717008-88717027 MsG0180005219.01.T01:intron 50.0%
GCAATATTACAGTCGCAGGG+TGG + Chr1:88721333-88721352 None:intergenic 50.0%
GCGCAATTGCGGGTATAAAG+TGG - Chr1:88720611-88720630 MsG0180005219.01.T01:intron 50.0%
GGCTAACACAAAACCCACCA+TGG + Chr1:88718129-88718148 None:intergenic 50.0%
GTCATAGGTTGCATCCGCAT+GGG + Chr1:88716859-88716878 None:intergenic 50.0%
GTGAAATGGCCTACTAGGTC+TGG - Chr1:88717983-88718002 MsG0180005219.01.T01:intron 50.0%
GTGGTGGTAGATCTTCTGCT+AGG - Chr1:88716993-88717012 MsG0180005219.01.T01:intron 50.0%
GTTCTTGTGTATAGGAGGCC+AGG - Chr1:88716487-88716506 MsG0180005219.01.T01:three_prime_UTR 50.0%
GTTTCCCGATAAAACCCTCG+TGG + Chr1:88720368-88720387 None:intergenic 50.0%
TATATCCACACCAAACGGGG+AGG + Chr1:88718792-88718811 None:intergenic 50.0%
TATCAGCTTCAGAGAGAGGG+AGG + Chr1:88716255-88716274 None:intergenic 50.0%
TGAACTTGCAGCTGTACCCA+TGG - Chr1:88723454-88723473 MsG0180005219.01.T01:CDS 50.0%
TGTCATAGGTTGCATCCGCA+TGG + Chr1:88716860-88716879 None:intergenic 50.0%
TTACAGAGATTCGGGCAGCT+GGG - Chr1:88716140-88716159 MsG0180005219.01.T01:three_prime_UTR 50.0%
TTGTCAATAGTGGCCGATCG+CGG - Chr1:88720518-88720537 MsG0180005219.01.T01:intron 50.0%
TTTACAGAGATTCGGGCAGC+TGG - Chr1:88716139-88716158 MsG0180005219.01.T01:three_prime_UTR 50.0%
TTTGGAGAAAGCGGCTGAAG+CGG - Chr1:88720588-88720607 MsG0180005219.01.T01:intron 50.0%
! AAGCCCTTTGGAGGCTATAG+AGG - Chr1:88716345-88716364 MsG0180005219.01.T01:three_prime_UTR 50.0%
! CTCAGACTAGCTGTGCTCTT+TGG - Chr1:88721442-88721461 MsG0180005219.01.T01:intron 50.0%
! GAATCTCATGGAGGAGGTGT+TGG - Chr1:88716202-88716221 MsG0180005219.01.T01:three_prime_UTR 50.0%
! GATGACTGCAGAGGAGGTTT+TGG + Chr1:88718398-88718417 None:intergenic 50.0%
!! ATGATGGATGACTGCAGAGG+AGG + Chr1:88718404-88718423 None:intergenic 50.0%
!! GCTCCCATTTGATGGACTTC+TGG - Chr1:88717721-88717740 MsG0180005219.01.T01:intron 50.0%
!! TCGCAGGGTGGACTAAAAGA+TGG + Chr1:88721321-88721340 None:intergenic 50.0%
AAACCGCTCTGGTGGGATAC+AGG - Chr1:88722129-88722148 MsG0180005219.01.T01:intron 55.0%
ACAGGGATCATGACGACCAC+GGG + Chr1:88723057-88723076 None:intergenic 55.0%
AGCGGGCACTATTTCGGTGA+CGG + Chr1:88721189-88721208 None:intergenic 55.0%
AGCTACCATGGCCTCTACCA+TGG + Chr1:88723474-88723493 None:intergenic 55.0%
CAACCTCTCGGGACAACACA+GGG + Chr1:88723074-88723093 None:intergenic 55.0%
CACAGGGATCATGACGACCA+CGG + Chr1:88723058-88723077 None:intergenic 55.0%
CCAGGGTTCGAATCTTGGCA+AGG + Chr1:88718720-88718739 None:intergenic 55.0%
CCTTGCCAAGATTCGAACCC+TGG - Chr1:88718717-88718736 MsG0180005219.01.T01:intron 55.0%
CTGGGTCAAGCGCAACTCTA+AGG + Chr1:88718064-88718083 None:intergenic 55.0%
GAAACAGAGCTCATAGCCCG+TGG - Chr1:88723038-88723057 MsG0180005219.01.T01:intron 55.0%
GAAATGGGAGCCTTTCGGCA+GGG + Chr1:88717272-88717291 None:intergenic 55.0%
GCGCAACTCATTTACTCCCC+TGG + Chr1:88722439-88722458 None:intergenic 55.0%
GCTACCATGGCCTCTACCAT+GGG + Chr1:88723473-88723492 None:intergenic 55.0%
GGCCACCCCAAAAATTGACG+CGG + Chr1:88721230-88721249 None:intergenic 55.0%
GGCTGAGATACCAACCTCTC+GGG + Chr1:88723085-88723104 None:intergenic 55.0%
GGTAGAGGCCATGGTAGCTT+TGG - Chr1:88723475-88723494 MsG0180005219.01.T01:intron 55.0%
GGTATAAAGTGGGCGCGATG+CGG - Chr1:88720622-88720641 MsG0180005219.01.T01:intron 55.0%
TAGGTTGCATCCGCATGGGA+AGG + Chr1:88716855-88716874 None:intergenic 55.0%
TATCCACACCAAACGGGGAG+GGG + Chr1:88718790-88718809 None:intergenic 55.0%
TGCAGCTGTACCCATGGTAG+AGG - Chr1:88723460-88723479 MsG0180005219.01.T01:CDS 55.0%
TGTACCCATGGTAGAGGCCA+TGG - Chr1:88723466-88723485 MsG0180005219.01.T01:intron 55.0%
TTGGAGAAAGCGGCTGAAGC+GGG - Chr1:88720589-88720608 MsG0180005219.01.T01:intron 55.0%
TTTCTCCAAACGCTCCGCGT+TGG + Chr1:88720578-88720597 None:intergenic 55.0%
! GGGCAGCTGGGAGTACATAT+GGG - Chr1:88716152-88716171 MsG0180005219.01.T01:three_prime_UTR 55.0%
!! GAACATGGTGTTGCGGCCTA+TGG + Chr1:88718192-88718211 None:intergenic 55.0%
ACACCAAACGGGGAGGGGAT+GGG + Chr1:88718785-88718804 None:intergenic 60.0%
CCAAAAATTGACGCGGCGCG+GGG + Chr1:88721223-88721242 None:intergenic 60.0%
CCAACCTCTCGGGACAACAC+AGG + Chr1:88723075-88723094 None:intergenic 60.0%
CCCAAAAATTGACGCGGCGC+GGG + Chr1:88721224-88721243 None:intergenic 60.0%
CCCCAAAAATTGACGCGGCG+CGG + Chr1:88721225-88721244 None:intergenic 60.0%
CCTGTGTTGTCCCGAGAGGT+TGG - Chr1:88723072-88723091 MsG0180005219.01.T01:CDS 60.0%
CGGGCACTATTTCGGTGACG+GGG + Chr1:88721187-88721206 None:intergenic 60.0%
GAGGGGATGGGTAGCTCACT+TGG + Chr1:88718773-88718792 None:intergenic 60.0%
GATCCCTGTGTTGTCCCGAG+AGG - Chr1:88723068-88723087 MsG0180005219.01.T01:CDS 60.0%
GCGGGCACTATTTCGGTGAC+GGG + Chr1:88721188-88721207 None:intergenic 60.0%
GGAAATGGGAGCCTTTCGGC+AGG + Chr1:88717273-88717292 None:intergenic 60.0%
GTGTGAAAACGGTGTGGGGG+CGG + Chr1:88722606-88722625 None:intergenic 60.0%
TCTGCAACCTCCCTGCCGAA+AGG - Chr1:88717259-88717278 MsG0180005219.01.T01:intron 60.0%
TGTGAAAACGGTGTGGGGGC+GGG + Chr1:88722605-88722624 None:intergenic 60.0%
! CCCGCGCCGCGTCAATTTTT+GGG - Chr1:88721221-88721240 MsG0180005219.01.T01:CDS 60.0%
! CCGCGCCGCGTCAATTTTTG+GGG - Chr1:88721222-88721241 MsG0180005219.01.T01:CDS 60.0%
! CGCGGAGCGTTTGGAGAAAG+CGG - Chr1:88720579-88720598 MsG0180005219.01.T01:intron 60.0%
! CGGGCAGCTGGGAGTACATA+TGG - Chr1:88716151-88716170 MsG0180005219.01.T01:three_prime_UTR 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG - Chr1:88721225-88721244 MsG0180005219.01.T01:CDS 60.0%
!! GCGCGTAGCGGGCACTATTT+CGG + Chr1:88721195-88721214 None:intergenic 60.0%
!!! ATTTTTGGCCGCGCCGCGAT+CGG + Chr1:88720534-88720553 None:intergenic 60.0%
AATAGTGGCCGATCGCGGCG+CGG - Chr1:88720523-88720542 MsG0180005219.01.T01:intron 65.0%
ATGGGAGCCTTTCGGCAGGG+AGG + Chr1:88717269-88717288 None:intergenic 65.0%
CACACCAAACGGGGAGGGGA+TGG + Chr1:88718786-88718805 None:intergenic 65.0%
CGCAACGCAGCTCTCCAACG+CGG - Chr1:88720561-88720580 MsG0180005219.01.T01:intron 65.0%
CTACCCATCCCCTCCCCGTT+TGG - Chr1:88718779-88718798 MsG0180005219.01.T01:intron 65.0%
GATCGCGGCGCGGCCAAAAA+TGG - Chr1:88720533-88720552 MsG0180005219.01.T01:intron 65.0%
GCTGAAGCGGGCGCAATTGC+GGG - Chr1:88720601-88720620 MsG0180005219.01.T01:intron 65.0%
GCTTCAGAGAGAGGGAGGCG+AGG + Chr1:88716250-88716269 None:intergenic 65.0%
GGCTGAAGCGGGCGCAATTG+CGG - Chr1:88720600-88720619 MsG0180005219.01.T01:intron 65.0%
TCAGAGAGAGGGAGGCGAGG+AGG + Chr1:88716247-88716266 None:intergenic 65.0%
! CATCCCCTCCCCGTTTGGTG+TGG - Chr1:88718784-88718803 MsG0180005219.01.T01:intron 65.0%
! CCCCGCGCCGCGTCAATTTT+TGG - Chr1:88721220-88721239 MsG0180005219.01.T01:CDS 65.0%
! GCTCTCCAACGCGGAGCGTT+TGG - Chr1:88720570-88720589 MsG0180005219.01.T01:intron 65.0%
AATTGACGCGGCGCGGGGTG+CGG + Chr1:88721218-88721237 None:intergenic 70.0%
AGCGGAAATGCGGCGCGACG+CGG + Chr1:88721251-88721270 None:intergenic 70.0%
GGCGCGATGCGGCTCAAAGC+GGG - Chr1:88720633-88720652 MsG0180005219.01.T01:intron 70.0%
GGGCGCGATGCGGCTCAAAG+CGG - Chr1:88720632-88720651 MsG0180005219.01.T01:intron 70.0%
ATTGACGCGGCGCGGGGTGC+GGG + Chr1:88721217-88721236 None:intergenic 75.0%
! CGCGGGGTGCGGGCGCGTAG+CGG + Chr1:88721207-88721226 None:intergenic 85.0%
! GCGGGGTGCGGGCGCGTAGC+GGG + Chr1:88721206-88721225 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr1 gene 88716133 88724011 88716133 ID=MsG0180005219.01;Name=MsG0180005219.01
Chr1 mRNA 88716133 88724011 88716133 ID=MsG0180005219.01.T01;Parent=MsG0180005219.01;Name=MsG0180005219.01.T01;_AED=0.42;_eAED=0.42;_QI=0|1|0.91|1|1|1|12|401|394
Chr1 exon 88716133 88716679 88716133 ID=MsG0180005219.01.T01:exon:11087;Parent=MsG0180005219.01.T01
Chr1 exon 88717055 88717139 88717055 ID=MsG0180005219.01.T01:exon:11086;Parent=MsG0180005219.01.T01
Chr1 exon 88717819 88717884 88717819 ID=MsG0180005219.01.T01:exon:11085;Parent=MsG0180005219.01.T01
Chr1 exon 88717994 88718088 88717994 ID=MsG0180005219.01.T01:exon:11084;Parent=MsG0180005219.01.T01
Chr1 exon 88718214 88718316 88718214 ID=MsG0180005219.01.T01:exon:11083;Parent=MsG0180005219.01.T01
Chr1 exon 88719869 88720000 88719869 ID=MsG0180005219.01.T01:exon:11082;Parent=MsG0180005219.01.T01
Chr1 exon 88721175 88721255 88721175 ID=MsG0180005219.01.T01:exon:11081;Parent=MsG0180005219.01.T01
Chr1 exon 88723060 88723152 88723060 ID=MsG0180005219.01.T01:exon:11080;Parent=MsG0180005219.01.T01
Chr1 exon 88723239 88723322 88723239 ID=MsG0180005219.01.T01:exon:11079;Parent=MsG0180005219.01.T01
Chr1 exon 88723424 88723482 88723424 ID=MsG0180005219.01.T01:exon:11078;Parent=MsG0180005219.01.T01
Chr1 exon 88723567 88723643 88723567 ID=MsG0180005219.01.T01:exon:11077;Parent=MsG0180005219.01.T01
Chr1 exon 88723848 88724011 88723848 ID=MsG0180005219.01.T01:exon:11076;Parent=MsG0180005219.01.T01
Chr1 CDS 88723848 88724011 88723848 ID=MsG0180005219.01.T01:cds;Parent=MsG0180005219.01.T01
Chr1 CDS 88723567 88723643 88723567 ID=MsG0180005219.01.T01:cds;Parent=MsG0180005219.01.T01
Chr1 CDS 88723424 88723482 88723424 ID=MsG0180005219.01.T01:cds;Parent=MsG0180005219.01.T01
Chr1 CDS 88723239 88723322 88723239 ID=MsG0180005219.01.T01:cds;Parent=MsG0180005219.01.T01
Chr1 CDS 88723060 88723152 88723060 ID=MsG0180005219.01.T01:cds;Parent=MsG0180005219.01.T01
Chr1 CDS 88721175 88721255 88721175 ID=MsG0180005219.01.T01:cds;Parent=MsG0180005219.01.T01
Chr1 CDS 88719869 88720000 88719869 ID=MsG0180005219.01.T01:cds;Parent=MsG0180005219.01.T01
Chr1 CDS 88718214 88718316 88718214 ID=MsG0180005219.01.T01:cds;Parent=MsG0180005219.01.T01
Chr1 CDS 88717994 88718088 88717994 ID=MsG0180005219.01.T01:cds;Parent=MsG0180005219.01.T01
Chr1 CDS 88717819 88717884 88717819 ID=MsG0180005219.01.T01:cds;Parent=MsG0180005219.01.T01
Chr1 CDS 88717055 88717139 88717055 ID=MsG0180005219.01.T01:cds;Parent=MsG0180005219.01.T01
Chr1 CDS 88716534 88716679 88716534 ID=MsG0180005219.01.T01:cds;Parent=MsG0180005219.01.T01
Chr1 three_prime_UTR 88716133 88716533 88716133 ID=MsG0180005219.01.T01:three_prime_utr;Parent=MsG0180005219.01.T01
Gene Sequence

>MsG0180005219.01.T01

ATGTATTTTACAGAGATTCGGGCAGCTGGGAGTACATATGGGAACCACTTTCGGGTTACAACATATGGAGAATCTCATGGAGGAGGTGTTGGATGTGTCATTGATGGATGTCCTCCTCGCCTCCCTCTCTCTGAAGCTGATATGCAAGAGGATCTTGACAGAAGGAGGCCAGGTCAAAGCCGAATTACAACTCCCAGAAAGGAGACTGATACATGTAAAATACTCTCAGGAGTTTCAGAAGGAGTTACTACAGGAACTCCAATCCATGTATTTGTGCCCAATACTGATCAAAGAGGAAATGATTATAGCGAGATGTCATTAGCTTATAGGCCTTCCCATGCGGATGCAACCTATGACATGAAGTATGGTGTCAGATCAGTTCAGGGTGGTGGTAGATCTTCTGCTAGGGAAACCATTGGAAGGGTTGCTTCTGGTGCTGTTGCTAAGAAAATCCTTAAAAAATTTGCAGGAACTGAGATTCTTGCCTATGTCTCTCAAGTGCACAGGATTATTCTTCCCGAAGACTTAATTGACCATGAGACACTGACACTTGATCAGATTGAGAGTAATATTGTTCGATGTCCAGACCCTGAATATGCAGAGAAGATGATATCTGCTATTGATGCTGTCCGAGTGAAAGGTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGTGGTCTTGGTTCACCAGTATTTGACAAACTTGAAGCTGAGTTGGCTAAAGCTGCTATGTCATTGCCCGCAACTAAGGGTTTTCAATTTGGTAGTGGGTTTGCAGGTACCTTTTTGACTGGGAGTGAACACAATGATGAATTTTATATAGATCAAAATGGAAAGGTGAGGACAAGAACAAACCGCTCTGGTGGGATACAGGGTGGAATTTCCAATGGAGAAATAATTAACATGAGAATAGGTTTCAAGCCGACATCGACTATTACAAAGAAGCAATCTACAGTGACTCGGGATAAGAAAGAAACAGAGCTCATAGCCCGTGGTCGTCATGATCCCTGTGTTGTCCCGAGAGCTGTACCCATGGTAGAGGCCATGGTAGCTTTGGTACTTGTGGACCAATTGATGGCACAACATGCACAGTGTAATCTATTTCCCGCGAACTTTGATTTACAAGAATCCTTGTCAGCCAAATTAGAAACAGAAGAAGTGCCTTTCTGA
Protein sequence

>MsG0180005219.01.T01

MYFTEIRAAGSTYGNHFRVTTYGESHGGGVGCVIDGCPPRLPLSEADMQEDLDRRRPGQSRITTPRKETDTCKILSGVSEGVTTGTPIHVFVPNTDQRGNDYSEMSLAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVASGAVAKKILKKFAGTEILAYVSQVHRIILPEDLIDHETLTLDQIESNIVRCPDPEYAEKMISAIDAVRVKGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAAMSLPATKGFQFGSGFAGTFLTGSEHNDEFYIDQNGKVRTRTNRSGGIQGGISNGEIINMRIGFKPTSTITKKQSTVTRDKKETELIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQHAQCNLFPANFDLQESLSAKLETEEVPF*