AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005239.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005239.01.T01 MTR_1g095250 98.458 389 6 0 6 394 48 436 0.0 796
MsG0180005239.01.T01 MTR_0368s0020 91.837 49 4 0 182 230 83 131 1.77e-24 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005239.01.T01 AT1G48850 85.488 379 55 0 5 383 47 425 0.0 694
MsG0180005239.01.T01 AT1G48850 85.942 313 44 0 5 317 47 359 0.0 580
MsG0180005239.01.T01 AT1G48850 85.942 313 44 0 5 317 47 359 0.0 580

Find 119 sgRNAs with CRISPR-Local

Find 561 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACATGTATCAGTCTCCTTTC+TGG 0.119746 1:+88999130 None:intergenic
CACTTCTTCTGTTTCTAATT+TGG 0.135458 1:+88992052 None:intergenic
ATCATCTTCTCTGCATATTC+AGG 0.226636 1:+88995482 None:intergenic
GCGAGATGTCATTAGCTTAT+AGG 0.246076 1:-88998831 MsG0180005239.01.T01:CDS
TTGGACTGCATGTCGTATTC+TGG 0.254762 1:-88991898 MsG0180005239.01.T01:three_prime_UTR
TCCTTAAGAGATCCAGTTCT+TGG 0.259401 1:-88991917 MsG0180005239.01.T01:three_prime_UTR
TACATATGGGAACCACTTTC+GGG 0.279701 1:-88999495 MsG0180005239.01.T01:CDS
CAATTTGGTAGTGGGTTTGC+AGG 0.291322 1:-88993746 MsG0180005239.01.T01:intron
CACTTTCGGGTTACAACATA+TGG 0.302913 1:-88999482 MsG0180005239.01.T01:CDS
CATGTATCAGTCTCCTTTCT+GGG 0.318592 1:+88999131 None:intergenic
TTCATTATTTCTCAGGGTCT+TGG 0.321630 1:-88993842 MsG0180005239.01.T01:intron
GTACATATGGGAACCACTTT+CGG 0.342196 1:-88999496 MsG0180005239.01.T01:CDS
TTTCCTCTTTGATCAGTATT+GGG 0.342486 1:+88998963 None:intergenic
GCTTCAAGTTTGTCAAATAC+TGG 0.357310 1:+88993815 None:intergenic
ATTTCCTCTTTGATCAGTAT+TGG 0.358775 1:+88998962 None:intergenic
CTCAGATAAAATCTTCATTC+TGG 0.368408 1:-88991988 MsG0180005239.01.T01:three_prime_UTR
CCTTTCTGGGAGTTGTAATT+CGG 0.369236 1:+88999144 None:intergenic
CGGGCAGCTGGGAGTACATA+TGG 0.371354 1:-88999509 MsG0180005239.01.T01:CDS
GTGTTCACTCCCAGTCAAAA+AGG 0.378540 1:+88993596 None:intergenic
TCATTCTGGCTAGTGTTTAG+TGG 0.379236 1:-88991974 MsG0180005239.01.T01:three_prime_UTR
TGTTTCAATAAATGAAGCTT+TGG 0.379583 1:-88991645 MsG0180005239.01.T01:three_prime_UTR
ACCATTGGAAGGGTTGCTTC+TGG 0.385048 1:-88998636 MsG0180005239.01.T01:CDS
GAAATAATTAACATGAGAAT+AGG 0.385678 1:-88993377 MsG0180005239.01.T01:CDS
CATGTTAATTATTTCTCCAT+TGG 0.386598 1:+88993385 None:intergenic
AATTGAAAACCCTTAGTTGC+GGG 0.393669 1:+88993764 None:intergenic
TTCTCTGCATATTCAGGGTC+TGG 0.396812 1:+88995488 None:intergenic
TTTACAGAGATTCGGGCAGC+TGG 0.397683 1:-88999521 MsG0180005239.01.T01:CDS
CTCATGGTCAATTAAGTCTT+CGG 0.397981 1:+88996724 None:intergenic
TAAAATACTCTCAGGAGTTT+CGG 0.400065 1:-88999108 MsG0180005239.01.T01:CDS
TGGGTGCATATATCAGTAAT+TGG 0.408539 1:-88992012 MsG0180005239.01.T01:three_prime_UTR
TATGTCATTGCCCGCAACTA+AGG 0.414702 1:-88993774 MsG0180005239.01.T01:CDS
GTGCCTTTCTGAAAATGAAA+TGG 0.415398 1:-88992032 MsG0180005239.01.T01:exon
GGTACTTGTGGACCAATTGA+TGG 0.418936 1:-88992135 MsG0180005239.01.T01:CDS
TCCAAGAACTGGATCTCTTA+AGG 0.423067 1:+88991916 None:intergenic
TCATGGTCAATTAAGTCTTC+GGG 0.427778 1:+88996725 None:intergenic
GTATGGTGTCAGATCAGTTC+AGG 0.431140 1:-88998776 MsG0180005239.01.T01:intron
ATACATATATATATGTTTGC+TGG 0.443980 1:-88991872 MsG0180005239.01.T01:three_prime_UTR
AAACCGCTCTGGTGGGATAC+AGG 0.446252 1:-88993526 MsG0180005239.01.T01:intron
GGTAGAGGCCATGGTAGCTT+TGG 0.452564 1:-88992156 MsG0180005239.01.T01:CDS
TGACAAACTTGAAGCTGAGT+TGG 0.456051 1:-88993807 MsG0180005239.01.T01:CDS
ACGACATGCAGTCCAAGAAC+TGG 0.457953 1:+88991905 None:intergenic
GCAACCTATGACATGAAGTA+TGG 0.467320 1:-88998793 MsG0180005239.01.T01:CDS
GTGCATGTTGTGCCATCAAT+TGG 0.469901 1:+88992123 None:intergenic
GTTGTAATTCGGCTTTGACC+TGG 0.476712 1:+88999155 None:intergenic
CAGTATTGGGCACAAATACA+TGG 0.482313 1:+88998976 None:intergenic
TTGGGCACAAATACATGGAT+TGG 0.483473 1:+88998981 None:intergenic
TGTTTCTAATTTGGCTGACA+AGG 0.491775 1:+88992061 None:intergenic
GGTGTTGGATGTGTCATTGA+TGG 0.495772 1:-88999443 MsG0180005239.01.T01:CDS
CCGAATTACAACTCCCAGAA+AGG 0.500551 1:-88999144 MsG0180005239.01.T01:CDS
GAATCTCATGGAGGAGGTGT+TGG 0.513832 1:-88999458 MsG0180005239.01.T01:CDS
TGAGACACTGACACTTGATC+AGG 0.515093 1:-88996705 MsG0180005239.01.T01:intron
AACTCCTATATTTAGGGTGG+TGG 0.515942 1:-88998678 MsG0180005239.01.T01:intron
GGGCAGCTGGGAGTACATAT+GGG 0.522096 1:-88999508 MsG0180005239.01.T01:CDS
CATGGTAGCTTTGGTACTTG+TGG 0.522487 1:-88992147 MsG0180005239.01.T01:CDS
TCATCTTCTCTGCATATTCA+GGG 0.523950 1:+88995483 None:intergenic
GGCTGAGATACCAACCTCTC+GGG 0.524544 1:+88992549 None:intergenic
TTCTTGTAAATCAAAGTTCG+CGG 0.527748 1:+88992085 None:intergenic
TGCCTTTCTGAAAATGAAAT+GGG 0.530857 1:-88992031 MsG0180005239.01.T01:exon
TTAATTGCAGGAGTTACTAC+AGG 0.532875 1:-88999008 MsG0180005239.01.T01:intron
GATACATGTAAAATACTCTC+AGG 0.533691 1:-88999116 MsG0180005239.01.T01:CDS
GTTCTTGTGTATAGGAGGCC+AGG 0.534576 1:-88999173 MsG0180005239.01.T01:intron
TGTCATAGGTTGCATCCGCA+TGG 0.536508 1:+88998803 None:intergenic
GACACCATACTTCATGTCAT+AGG 0.537696 1:+88998789 None:intergenic
TCTTGTAAATCAAAGTTCGC+GGG 0.540183 1:+88992086 None:intergenic
ATGTCATTGCCCGCAACTAA+GGG 0.549586 1:-88993773 MsG0180005239.01.T01:CDS
TCTTCTGCTAGGGAAACCAT+TGG 0.551202 1:-88998651 MsG0180005239.01.T01:CDS
AATCAGGGTGGAATTTCCAA+TGG 0.556969 1:-88993401 MsG0180005239.01.T01:intron
GTGGTGGTAGATCTTCTGCT+AGG 0.562776 1:-88998662 MsG0180005239.01.T01:CDS
CCTGTGCACTTGAGAGACAT+AGG 0.564384 1:+88996757 None:intergenic
TGCAGCTGTACCCATGGTAG+AGG 0.565756 1:-88992171 MsG0180005239.01.T01:intron
CTCTGAAGCTGATATGCAAG+AGG 0.568295 1:-88999399 MsG0180005239.01.T01:CDS
AGCTACCATGGCCTCTACCA+TGG 0.568585 1:+88992160 None:intergenic
ACCAGAAGCAACCCTTCCAA+TGG 0.569596 1:+88998635 None:intergenic
CCTATGTCTCTCAAGTGCAC+AGG 0.572163 1:-88996757 MsG0180005239.01.T01:CDS
CAACCTCTCGGGACAACACA+GGG 0.572864 1:+88992560 None:intergenic
CATATGTTGTAACCCGAAAG+TGG 0.573615 1:+88999483 None:intergenic
ACAAGAACAAACCGCTCTGG+TGG 0.573699 1:-88993534 MsG0180005239.01.T01:CDS
ACAGGGATCATGACGACCAC+GGG 0.574091 1:+88992577 None:intergenic
TGCTAGGGAAACCATTGGAA+GGG 0.574957 1:-88998646 MsG0180005239.01.T01:CDS
TGTACCCATGGTAGAGGCCA+TGG 0.577435 1:-88992165 MsG0180005239.01.T01:CDS
GTCATAGGTTGCATCCGCAT+GGG 0.577755 1:+88998804 None:intergenic
CTGCTAGGGAAACCATTGGA+AGG 0.577836 1:-88998647 MsG0180005239.01.T01:CDS
GTGAAAGGTGATTCTGTTGG+TGG 0.578147 1:-88995437 MsG0180005239.01.T01:CDS
CAACAGAATCACCTTTCACT+CGG 0.578783 1:+88995441 None:intergenic
AGGACAAGAACAAACCGCTC+TGG 0.581332 1:-88993537 MsG0180005239.01.T01:CDS
TGGTGGTAGATCTTCTGCTA+GGG 0.582067 1:-88998661 MsG0180005239.01.T01:CDS
ACAACATATGGAGAATCTCA+TGG 0.584104 1:-88999470 MsG0180005239.01.T01:CDS
TTATATAGATCAAAATGGAA+AGG 0.585581 1:-88993562 MsG0180005239.01.T01:CDS
GATCAAGTGTCAGTGTCTCA+TGG 0.586576 1:+88996708 None:intergenic
ATTGATGCTGTCCGAGTGAA+AGG 0.587265 1:-88995452 MsG0180005239.01.T01:CDS
GCTACCATGGCCTCTACCAT+GGG 0.587349 1:+88992161 None:intergenic
TGCATATCAGCTTCAGAGAG+AGG 0.589694 1:+88999404 None:intergenic
TTACAGAGATTCGGGCAGCT+GGG 0.592616 1:-88999520 MsG0180005239.01.T01:CDS
GCTTCAGAGAGAGGGAGGCG+AGG 0.596196 1:+88999413 None:intergenic
GCATATCAGCTTCAGAGAGA+GGG 0.596658 1:+88999405 None:intergenic
GAAGCAATCTACAGTGACTC+GGG 0.598566 1:-88992624 MsG0180005239.01.T01:CDS
GTGCCCAATACTGATCAAAG+AGG 0.603337 1:-88998966 MsG0180005239.01.T01:CDS
CACAAGTACCAAAGCTACCA+TGG 0.605561 1:+88992148 None:intergenic
CACAGGGATCATGACGACCA+CGG 0.605920 1:+88992576 None:intergenic
TGAACTTGCAGCTGTACCCA+TGG 0.607274 1:-88992177 MsG0180005239.01.T01:intron
TATGGAGAATCTCATGGAGG+AGG 0.607485 1:-88999464 MsG0180005239.01.T01:CDS
TAGGTTGCATCCGCATGGGA+AGG 0.607769 1:+88998808 None:intergenic
ATACTCTCAGGAGTTTCGGA+AGG 0.610665 1:-88999104 MsG0180005239.01.T01:intron
AGAAGCAATCTACAGTGACT+CGG 0.610730 1:-88992625 MsG0180005239.01.T01:CDS
CCAACCTCTCGGGACAACAC+AGG 0.611393 1:+88992559 None:intergenic
AGCTTATAGGCCTTCCCATG+CGG 0.616697 1:-88998818 MsG0180005239.01.T01:CDS
AAATTGAAAACCCTTAGTTG+CGG 0.624146 1:+88993763 None:intergenic
TCAGAGAGAGGGAGGCGAGG+AGG 0.627324 1:+88999416 None:intergenic
TGCAAGAGGATCTTGACAGA+AGG 0.632234 1:-88999385 MsG0180005239.01.T01:intron
CAAGAACAAACCGCTCTGGT+GGG 0.632701 1:-88993533 MsG0180005239.01.T01:CDS
CTTACTGTAATAGTCGATGT+CGG 0.643905 1:+88993347 None:intergenic
TATCAGCTTCAGAGAGAGGG+AGG 0.644707 1:+88999408 None:intergenic
TAGATCAAAATGGAAAGGTG+AGG 0.648351 1:-88993557 MsG0180005239.01.T01:CDS
CGAGTGAAAGGTGATTCTGT+TGG 0.682023 1:-88995440 MsG0180005239.01.T01:CDS
GAAACAGAGCTCATAGCCCG+TGG 0.694287 1:-88992593 MsG0180005239.01.T01:CDS
GTGTTGTAACATGCATTGTG+AGG 0.723456 1:-88995415 MsG0180005239.01.T01:CDS
GATCCCTGTGTTGTCCCGAG+AGG 0.731256 1:-88992563 MsG0180005239.01.T01:intron
ACATATGGAGAATCTCATGG+AGG 0.763629 1:-88999467 MsG0180005239.01.T01:CDS
ATACCTGTATCCCACCAGAG+CGG 0.816288 1:+88993523 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTAATTAATATAA+AGG - Chr1:88999332-88999351 MsG0180005239.01.T01:intron 0.0%
!! AAAAATACTAATAAAATTCA+AGG + Chr1:88996534-88996553 None:intergenic 10.0%
!! AACATAAAACTTTAAATAAT+GGG + Chr1:88998675-88998694 None:intergenic 10.0%
!! ATATTTACTAAATTAATTTC+TGG + Chr1:88996881-88996900 None:intergenic 10.0%
!! TATACATTAATTAATATAGA+GGG + Chr1:88998099-88998118 None:intergenic 10.0%
!! TATTTAAATATCAAATAACA+GGG + Chr1:88997099-88997118 None:intergenic 10.0%
!! TTATTTAAATATCAAATAAC+AGG + Chr1:88997100-88997119 None:intergenic 10.0%
!!! AAAATTTCGTAATTTTTTAT+TGG - Chr1:88998965-88998984 MsG0180005239.01.T01:CDS 10.0%
!!! AATTTGTTAATTTGTTAATT+GGG - Chr1:88996435-88996454 MsG0180005239.01.T01:intron 10.0%
!!! ATTGTTTATATTTAAAATCA+GGG - Chr1:88997751-88997770 MsG0180005239.01.T01:intron 10.0%
!!! TAATTTGTTAATTTGTTAAT+TGG - Chr1:88996434-88996453 MsG0180005239.01.T01:intron 10.0%
!!! TATTGTTTATATTTAAAATC+AGG - Chr1:88997750-88997769 MsG0180005239.01.T01:intron 10.0%
!!! TTTAAGATAAAATGTATAAA+AGG - Chr1:88995185-88995204 MsG0180005239.01.T01:intron 10.0%
!!! TTTTATACATTTTATCTTAA+AGG + Chr1:88995186-88995205 None:intergenic 10.0%
!! AAAGAAATTTAACATTAGTA+TGG + Chr1:88992626-88992645 None:intergenic 15.0%
!! AAGAGAAAAAAAAAATAACA+TGG + Chr1:88999365-88999384 None:intergenic 15.0%
!! ATACATTAATTAATATAGAG+GGG + Chr1:88998098-88998117 None:intergenic 15.0%
!! ATATAAAGTTACAAATCAAT+AGG + Chr1:88997170-88997189 None:intergenic 15.0%
!! ATGATTAAAACGAATATTAT+AGG + Chr1:88993154-88993173 None:intergenic 15.0%
!! ATTTGATATAACAATTTGTA+TGG - Chr1:88995054-88995073 MsG0180005239.01.T01:intron 15.0%
!! CAACATAAAACTTTAAATAA+TGG + Chr1:88998676-88998695 None:intergenic 15.0%
!! GTATAAATAAATATCTCAAA+GGG - Chr1:88995096-88995115 MsG0180005239.01.T01:intron 15.0%
!! GTATACATTAATTAATATAG+AGG + Chr1:88998100-88998119 None:intergenic 15.0%
!! GTTGAAATTTAATAGAAAAT+CGG + Chr1:88998909-88998928 None:intergenic 15.0%
!! TAAAATAAGTAGTATGAATT+AGG + Chr1:88995424-88995443 None:intergenic 15.0%
!! TATAAAGTTACAAATCAATA+GGG + Chr1:88997169-88997188 None:intergenic 15.0%
!! TATAAATAAATATCTCAAAG+GGG - Chr1:88995097-88995116 MsG0180005239.01.T01:intron 15.0%
!! TGATTAAAACGAATATTATA+GGG + Chr1:88993153-88993172 None:intergenic 15.0%
!! TGTATAAATAAATATCTCAA+AGG - Chr1:88995095-88995114 MsG0180005239.01.T01:intron 15.0%
!!! ATGTATTTTTTATAGTGAAT+TGG - Chr1:88999440-88999459 MsG0180005239.01.T01:CDS 15.0%
!!! CTCTTTTTGTATTTATTTAT+TGG - Chr1:88995339-88995358 MsG0180005239.01.T01:intron 15.0%
!!! GAATTTTATATAGATCAAAA+TGG - Chr1:88997600-88997619 MsG0180005239.01.T01:intron 15.0%
!!! TTTCTTTAATGTTTTTTAAC+AGG - Chr1:88992639-88992658 MsG0180005239.01.T01:intron 15.0%
!! AAAATCCTTAAAAAATTTGC+AGG - Chr1:88992567-88992586 MsG0180005239.01.T01:CDS 20.0%
!! AAAGACATAAATCTAATGTT+AGG - Chr1:88998862-88998881 MsG0180005239.01.T01:intron 20.0%
!! AAATAAATACAAAAAGAGCA+AGG + Chr1:88995337-88995356 None:intergenic 20.0%
!! AAATAATTCTGCAAGAAAAT+AGG - Chr1:88995816-88995835 MsG0180005239.01.T01:intron 20.0%
!! AATAATTCTGCAAGAAAATA+GGG - Chr1:88995817-88995836 MsG0180005239.01.T01:intron 20.0%
!! AATCATTAGATACAGTTATT+TGG + Chr1:88995295-88995314 None:intergenic 20.0%
!! ACAGTGTAATAAAATAAGTT+AGG - Chr1:88992425-88992444 MsG0180005239.01.T01:intron 20.0%
!! ACATTAGATTTATGTCTTTA+TGG + Chr1:88998861-88998880 None:intergenic 20.0%
!! ACTGAGTTTAAATTTAACAA+AGG + Chr1:88994798-88994817 None:intergenic 20.0%
!! ATACATATATATATGTTTGC+TGG - Chr1:88999295-88999314 MsG0180005239.01.T01:intron 20.0%
!! CAAGATACATATGAAAAATT+AGG - Chr1:88993047-88993066 MsG0180005239.01.T01:intron 20.0%
!! CTAAAAAAATTACATTGATC+AGG + Chr1:88997501-88997520 None:intergenic 20.0%
!! CTGTATTGTTCTTTAATTAA+TGG + Chr1:88992742-88992761 None:intergenic 20.0%
!! GAAATAATTAACATGAGAAT+AGG - Chr1:88997790-88997809 MsG0180005239.01.T01:intron 20.0%
!! GACAACATTATTAAGAAAAT+GGG - Chr1:88994973-88994992 MsG0180005239.01.T01:intron 20.0%
!! TAGCTTAATGAAATCTTTAT+AGG - Chr1:88997546-88997565 MsG0180005239.01.T01:intron 20.0%
!! TCGTATAATTTATTAATTGC+AGG - Chr1:88992147-88992166 MsG0180005239.01.T01:CDS 20.0%
!! TGACAACATTATTAAGAAAA+TGG - Chr1:88994972-88994991 MsG0180005239.01.T01:intron 20.0%
!! TGCAAATTTAATACTTGTAT+CGG + Chr1:88997042-88997061 None:intergenic 20.0%
!! TGTTCAGAAATATTCAATAA+AGG - Chr1:88992243-88992262 MsG0180005239.01.T01:intron 20.0%
!! TTATATAGATCAAAATGGAA+AGG - Chr1:88997605-88997624 MsG0180005239.01.T01:intron 20.0%
!!! AATACTTTTTTATGGACATT+TGG - Chr1:88994607-88994626 MsG0180005239.01.T01:intron 20.0%
!!! AATGCAAACAGTTTTATAAA+AGG + Chr1:88994528-88994547 None:intergenic 20.0%
!!! ACTTCTTCTTTCTTATTTAT+GGG - Chr1:88992826-88992845 MsG0180005239.01.T01:intron 20.0%
!!! ATATACTGGTTATTTTGTTT+TGG - Chr1:88993099-88993118 MsG0180005239.01.T01:intron 20.0%
!!! ATTTTATTGAAATGCTAGTA+AGG - Chr1:88991892-88991911 MsG0180005239.01.T01:three_prime_UTR 20.0%
!!! CTAATAAAATGTTGTACTTT+TGG - Chr1:88992294-88992313 MsG0180005239.01.T01:intron 20.0%
!!! CTTTAAAGAATAACATTGTA+AGG - Chr1:88991972-88991991 MsG0180005239.01.T01:three_prime_UTR 20.0%
!!! TAGAAACAACTAATTTGTTA+TGG + Chr1:88997680-88997699 None:intergenic 20.0%
!!! TATAGGAGATTATATTTTCT+GGG + Chr1:88993596-88993615 None:intergenic 20.0%
!!! TATCTAATGATTACTTTTCA+TGG - Chr1:88995303-88995322 MsG0180005239.01.T01:intron 20.0%
!!! TGAATTTTGAGTAATGTTTA+AGG - Chr1:88996617-88996636 MsG0180005239.01.T01:intron 20.0%
!!! TGTGACTTTTATTTCAAATT+AGG - Chr1:88996585-88996604 MsG0180005239.01.T01:intron 20.0%
!!! TTAAAATGGTTTTAAGTGAA+GGG + Chr1:88996206-88996225 None:intergenic 20.0%
!!! TTCACTTAAAACCATTTTAA+GGG - Chr1:88996206-88996225 MsG0180005239.01.T01:intron 20.0%
!!! TTTTATTGAAATGCTAGTAA+GGG - Chr1:88991893-88991912 MsG0180005239.01.T01:three_prime_UTR 20.0%
! AAACACGTTAAACAGTTAAA+AGG + Chr1:88994333-88994352 None:intergenic 25.0%
! AAGAACAATCTAATAGTGAT+AGG + Chr1:88997066-88997085 None:intergenic 25.0%
! AAGTGTTAAAAGTTGTGTAT+GGG - Chr1:88998018-88998037 MsG0180005239.01.T01:intron 25.0%
! AATACCAAGTTTCTATTGAA+AGG + Chr1:88992709-88992728 None:intergenic 25.0%
! AATTCATCCAGAAATATCAT+TGG - Chr1:88994361-88994380 MsG0180005239.01.T01:intron 25.0%
! ATAACCAGTATATTATAGAC+AGG + Chr1:88993092-88993111 None:intergenic 25.0%
! ATAATAGGAATGAGAGAAAA+AGG - Chr1:88997116-88997135 MsG0180005239.01.T01:intron 25.0%
! ATTAATATAGAGGGGATATA+AGG + Chr1:88998090-88998109 None:intergenic 25.0%
! ATTTCAGCTATAATGATCAA+AGG + Chr1:88993469-88993488 None:intergenic 25.0%
! CAAAATCATTAGTTGTAACA+TGG + Chr1:88994732-88994751 None:intergenic 25.0%
! TAACCAGTATATTATAGACA+GGG + Chr1:88993091-88993110 None:intergenic 25.0%
! TAAGTGTTAAAAGTTGTGTA+TGG - Chr1:88998017-88998036 MsG0180005239.01.T01:intron 25.0%
! TAATGGGATGAAAATAAGAT+AGG + Chr1:88998659-88998678 None:intergenic 25.0%
! TACAAAAATGACCCTTAAAA+TGG + Chr1:88996220-88996239 None:intergenic 25.0%
! TAGAGGAATAATGTATAAGA+TGG - Chr1:88991869-88991888 MsG0180005239.01.T01:three_prime_UTR 25.0%
! TCTCATTCAAATAGAGAAAA+TGG + Chr1:88998235-88998254 None:intergenic 25.0%
! TGAAATGATATAGAGTGAAA+TGG - Chr1:88993483-88993502 MsG0180005239.01.T01:intron 25.0%
! TGAGTTTATTTAATTGCCAT+TGG + Chr1:88996938-88996957 None:intergenic 25.0%
! TGGCTTATTAGATAAAGAAT+TGG - Chr1:88993810-88993829 MsG0180005239.01.T01:CDS 25.0%
! TGTTTCAATAAATGAAGCTT+TGG - Chr1:88999522-88999541 MsG0180005239.01.T01:CDS 25.0%
! TTAACCTTTCAATAGAAACT+TGG - Chr1:88992702-88992721 MsG0180005239.01.T01:intron 25.0%
! TTACAATAGTTATGAGAAGA+CGG + Chr1:88991831-88991850 None:intergenic 25.0%
! TTCAATAGAAACTTGGTATT+GGG - Chr1:88992709-88992728 MsG0180005239.01.T01:intron 25.0%
! TTTCAATAGAAACTTGGTAT+TGG - Chr1:88992708-88992727 MsG0180005239.01.T01:intron 25.0%
!! AAATGACTTCATTATTTCTC+AGG - Chr1:88997318-88997337 MsG0180005239.01.T01:intron 25.0%
!! AATGACTTCATTATTTCTCA+GGG - Chr1:88997319-88997338 MsG0180005239.01.T01:intron 25.0%
!! ATACGTGATATAGAATTTTG+TGG - Chr1:88996899-88996918 MsG0180005239.01.T01:intron 25.0%
!! CAATACAAACATAAAGTACT+TGG + Chr1:88997263-88997282 None:intergenic 25.0%
!! CAATGACTTTTAGATGATTT+AGG - Chr1:88998448-88998467 MsG0180005239.01.T01:intron 25.0%
!! CACTTCTTCTTTCTTATTTA+TGG - Chr1:88992825-88992844 MsG0180005239.01.T01:intron 25.0%
!! CATGTTAATTATTTCTCCAT+TGG + Chr1:88997785-88997804 None:intergenic 25.0%
!! CTTCACTTAAAACCATTTTA+AGG - Chr1:88996205-88996224 MsG0180005239.01.T01:intron 25.0%
!! GCAACAAATTTTGTAGTTTT+TGG - Chr1:88999471-88999490 MsG0180005239.01.T01:CDS 25.0%
!! GTATAGGAGATTATATTTTC+TGG + Chr1:88993597-88993616 None:intergenic 25.0%
!! GTTACAACTAATGATTTTGT+CGG - Chr1:88994733-88994752 MsG0180005239.01.T01:intron 25.0%
!! GTTTATATTTAAAATCAGGG+TGG - Chr1:88997754-88997773 MsG0180005239.01.T01:intron 25.0%
!! TCATCGTGTTTTCAATATTA+GGG + Chr1:88993026-88993045 None:intergenic 25.0%
!! TTAATACTTGTATCGGTATA+TGG + Chr1:88997035-88997054 None:intergenic 25.0%
!! TTCATCGTGTTTTCAATATT+AGG + Chr1:88993027-88993046 None:intergenic 25.0%
!! TTTTATCGGGAAACTATATT+TGG - Chr1:88995885-88995904 MsG0180005239.01.T01:intron 25.0%
!!! AATGATATTTCTGGATGAAT+TGG + Chr1:88994362-88994381 None:intergenic 25.0%
!!! ATGTATTGATTTGGTAGTAA+AGG - Chr1:88995154-88995173 MsG0180005239.01.T01:intron 25.0%
!!! ATTATTTTTACTTGTCAGAG+AGG + Chr1:88995803-88995822 None:intergenic 25.0%
!!! CAATGTGAATGATTTGTTTT+AGG + Chr1:88992953-88992972 None:intergenic 25.0%
!!! CTAATAACTCTAAAACCTTT+TGG + Chr1:88993999-88994018 None:intergenic 25.0%
!!! CTACTTTTAATTCCATTTCA+TGG - Chr1:88994684-88994703 MsG0180005239.01.T01:intron 25.0%
!!! CTTAAAATGGTTTTAAGTGA+AGG + Chr1:88996207-88996226 None:intergenic 25.0%
!!! GTCAAGTAGTATTTTAAACA+TGG - Chr1:88994560-88994579 MsG0180005239.01.T01:intron 25.0%
!!! TGATGATGAATGTATTGATT+TGG - Chr1:88995145-88995164 MsG0180005239.01.T01:intron 25.0%
!!! TGTATTGATTTGGTAGTAAA+GGG - Chr1:88995155-88995174 MsG0180005239.01.T01:intron 25.0%
!!! TTGTTAATTTGTTAATTGGG+AGG - Chr1:88996438-88996457 MsG0180005239.01.T01:intron 25.0%
!!! TTTAATTGCCATTGGTTTTT+TGG + Chr1:88996930-88996949 None:intergenic 25.0%
!!! TTTGTTACTTTAAGCTTTAG+AGG - Chr1:88996492-88996511 MsG0180005239.01.T01:intron 25.0%
AAAAGTCCACTATATGAACA+TGG + Chr1:88993721-88993740 None:intergenic 30.0%
AAATTGAAAACCCTTAGTTG+CGG + Chr1:88997407-88997426 None:intergenic 30.0%
AACAAAAAATTGAGAGAGAG+GGG + Chr1:88994151-88994170 None:intergenic 30.0%
AACTATTGTAAAAAGCCCTT+TGG - Chr1:88991840-88991859 MsG0180005239.01.T01:three_prime_UTR 30.0%
AAGAACAATACAGAACTTCA+AGG - Chr1:88992749-88992768 MsG0180005239.01.T01:intron 30.0%
ACATCTGAACTCCTATATTT+AGG - Chr1:88992482-88992501 MsG0180005239.01.T01:intron 30.0%
ACCTAAATCAGCTAAAAATG+GGG + Chr1:88998412-88998431 None:intergenic 30.0%
AGAAACATTGCAGATACAAT+AGG + Chr1:88993682-88993701 None:intergenic 30.0%
AGAACAAAAAAAGGAAAGCT+GGG + Chr1:88993852-88993871 None:intergenic 30.0%
AGAACAATACAGAACTTCAA+GGG - Chr1:88992750-88992769 MsG0180005239.01.T01:intron 30.0%
ATAACCAAAACTACTAGATC+TGG + Chr1:88993949-88993968 None:intergenic 30.0%
ATAATGATCAAAGGTTCTCT+TGG + Chr1:88993460-88993479 None:intergenic 30.0%
ATAGGAAGGAGAACAAAAAA+AGG + Chr1:88993861-88993880 None:intergenic 30.0%
ATGGAGAAGAGTAATAGTTA+GGG + Chr1:88996253-88996272 None:intergenic 30.0%
ATTGAGCTAGCTATTGTTAT+GGG + Chr1:88993300-88993319 None:intergenic 30.0%
ATTGTAAGGTTCTTGTGTAT+AGG - Chr1:88991986-88992005 MsG0180005239.01.T01:three_prime_UTR 30.0%
ATTTCCTCTTTGATCAGTAT+TGG + Chr1:88992208-88992227 None:intergenic 30.0%
ATTTCGGCCAAAACAATTAT+AGG + Chr1:88993127-88993146 None:intergenic 30.0%
CAAGAATGATCTATCATGTT+AGG - Chr1:88992663-88992682 MsG0180005239.01.T01:intron 30.0%
CAAGAGATTAGAACAAAGAT+GGG + Chr1:88996370-88996389 None:intergenic 30.0%
CACCTAAATCAGCTAAAAAT+GGG + Chr1:88998413-88998432 None:intergenic 30.0%
CACTATTAGATTGTTCTTTG+AGG - Chr1:88997068-88997087 MsG0180005239.01.T01:intron 30.0%
CAGTTATTTGGTCAAAATAC+AGG + Chr1:88995283-88995302 None:intergenic 30.0%
CATATTACACAAGATCAGTA+TGG + Chr1:88994085-88994104 None:intergenic 30.0%
CATCTGAACTCCTATATTTA+GGG - Chr1:88992483-88992502 MsG0180005239.01.T01:intron 30.0%
CATGCAAGTCGATATATAAA+GGG + Chr1:88997195-88997214 None:intergenic 30.0%
CATTATGAATGATAGCTGAT+AGG - Chr1:88991923-88991942 MsG0180005239.01.T01:three_prime_UTR 30.0%
CTAACATGATAGATCATTCT+TGG + Chr1:88992665-88992684 None:intergenic 30.0%
CTCAGATAAAATCTTCATTC+TGG - Chr1:88999179-88999198 MsG0180005239.01.T01:intron 30.0%
GAACAAAAAATTGAGAGAGA+GGG + Chr1:88994152-88994171 None:intergenic 30.0%
GAACAATATTACTCTCAATC+TGG + Chr1:88995654-88995673 None:intergenic 30.0%
GAATATTATAGGGACCATTT+CGG + Chr1:88993143-88993162 None:intergenic 30.0%
GAGTACATTTATTCGAAATG+TGG + Chr1:88994837-88994856 None:intergenic 30.0%
GATACATGTAAAATACTCTC+AGG - Chr1:88992051-88992070 MsG0180005239.01.T01:CDS 30.0%
GGTAAACATAAGTGTGAAAA+CGG + Chr1:88998153-88998172 None:intergenic 30.0%
GGTGATATTATGTGTTTGTT+AGG + Chr1:88992928-88992947 None:intergenic 30.0%
TAAAAAATTTGCAGGAACTG+AGG - Chr1:88992575-88992594 MsG0180005239.01.T01:CDS 30.0%
TAAAACTCTGTTGTCAATAG+TGG - Chr1:88996021-88996040 MsG0180005239.01.T01:intron 30.0%
TAAAATACTCTCAGGAGTTT+CGG - Chr1:88992059-88992078 MsG0180005239.01.T01:CDS 30.0%
TAACAGATTAAAGGAGTTCA+AGG + Chr1:88994258-88994277 None:intergenic 30.0%
TATTGAGCTAGCTATTGTTA+TGG + Chr1:88993301-88993320 None:intergenic 30.0%
TCAAGAGATTAGAACAAAGA+TGG + Chr1:88996371-88996390 None:intergenic 30.0%
TCTTCTTACTGCTATTAACT+GGG - Chr1:88992094-88992113 MsG0180005239.01.T01:CDS 30.0%
TGAACAAAAAATTGAGAGAG+AGG + Chr1:88994153-88994172 None:intergenic 30.0%
TGAGATAGTTGTAAGAAATG+AGG + Chr1:88992859-88992878 None:intergenic 30.0%
TGGGATATCAATGTTATCAA+TGG + Chr1:88993770-88993789 None:intergenic 30.0%
TTCTTCTTACTGCTATTAAC+TGG - Chr1:88992093-88992112 MsG0180005239.01.T01:CDS 30.0%
TTCTTGTAAATCAAAGTTCG+CGG + Chr1:88999085-88999104 None:intergenic 30.0%
TTGAAATGCATTCCATGAAA+TGG + Chr1:88994699-88994718 None:intergenic 30.0%
TTTATTAGCCACGTAAATCA+AGG + Chr1:88992282-88992301 None:intergenic 30.0%
TTTCCTCTTTGATCAGTATT+GGG + Chr1:88992207-88992226 None:intergenic 30.0%
TTTCGGCCAAAACAATTATA+GGG + Chr1:88993126-88993145 None:intergenic 30.0%
! AAAACCAGATCTAGTAGTTT+TGG - Chr1:88993942-88993961 MsG0180005239.01.T01:intron 30.0%
! AAGTAGTTAGTTGGTTAGTT+GGG + Chr1:88992883-88992902 None:intergenic 30.0%
! AATAGCTAGCTCAATAGTTT+TGG - Chr1:88993305-88993324 MsG0180005239.01.T01:intron 30.0%
! CAAATTTTTACCATTCCAAC+TGG - Chr1:88995000-88995019 MsG0180005239.01.T01:intron 30.0%
! CAGAATGAAGATTTTATCTG+AGG + Chr1:88999181-88999200 None:intergenic 30.0%
! GAAATCCTGTATTTTACACA+GGG + Chr1:88996184-88996203 None:intergenic 30.0%
! GAATTCTTTAGAGACATGAA+TGG + Chr1:88993353-88993372 None:intergenic 30.0%
! GATTTTGTCGGAAGAAATTT+TGG - Chr1:88994745-88994764 MsG0180005239.01.T01:intron 30.0%
! GTTTTCAATATTAGGGAACT+TGG + Chr1:88993019-88993038 None:intergenic 30.0%
! TATGTGTTTGTTAGGACATT+TGG + Chr1:88992920-88992939 None:intergenic 30.0%
! TGACTTTTAGATGATTTAGG+TGG - Chr1:88998451-88998470 MsG0180005239.01.T01:intron 30.0%
! TGCCTTTCTGAAAATGAAAT+GGG - Chr1:88999136-88999155 MsG0180005239.01.T01:CDS 30.0%
! TTTATAGGTACCTTTTTGAC+TGG - Chr1:88997561-88997580 MsG0180005239.01.T01:intron 30.0%
! TTTGGTCCCTATAATTGTTT+TGG - Chr1:88993117-88993136 MsG0180005239.01.T01:intron 30.0%
!! AAAGTATTTTCCCAGTAGAT+TGG + Chr1:88998819-88998838 None:intergenic 30.0%
!! CACTTCTTCTGTTTCTAATT+TGG + Chr1:88999118-88999137 None:intergenic 30.0%
!! GTATTGATTTGGTAGTAAAG+GGG - Chr1:88995156-88995175 MsG0180005239.01.T01:intron 30.0%
!! TTAGATTGTTCTTTGAGGTA+TGG - Chr1:88997073-88997092 MsG0180005239.01.T01:intron 30.0%
!! TTATAGGTACCTTTTTGACT+GGG - Chr1:88997562-88997581 MsG0180005239.01.T01:intron 30.0%
!! TTTCTTTTCTAGTGATGAGA+AGG + Chr1:88998948-88998967 None:intergenic 30.0%
!! TTTGGCTTTCTGAATTTCAA+CGG - Chr1:88995903-88995922 MsG0180005239.01.T01:intron 30.0%
!!! AGATCTAGTAGTTTTGGTTA+TGG - Chr1:88993948-88993967 MsG0180005239.01.T01:intron 30.0%
!!! AGATCTGGTTTTTGATATGA+TGG + Chr1:88993934-88993953 None:intergenic 30.0%
!!! AGATGAGATGGATTTTTTTG+TGG + Chr1:88996319-88996338 None:intergenic 30.0%
!!! ATGTTCATATAGTGGACTTT+TGG - Chr1:88993720-88993739 MsG0180005239.01.T01:intron 30.0%
!!! ATTTTTTTAGCAGTTGTGTC+TGG - Chr1:88997511-88997530 MsG0180005239.01.T01:intron 30.0%
!!! CAGTTCCTGCAAATTTTTTA+AGG + Chr1:88992575-88992594 None:intergenic 30.0%
!!! GATGAGATGGATTTTTTTGT+GGG + Chr1:88996318-88996337 None:intergenic 30.0%
!!! GTACTTTTGGATACTTTTTC+AGG - Chr1:88992307-88992326 MsG0180005239.01.T01:intron 30.0%
!!! GTGAATGATTTGTTTTAGGT+GGG + Chr1:88992949-88992968 None:intergenic 30.0%
!!! TATAATTGTTTTGGCCGAAA+TGG - Chr1:88993126-88993145 MsG0180005239.01.T01:intron 30.0%
!!! TGTGAATGATTTGTTTTAGG+TGG + Chr1:88992950-88992969 None:intergenic 30.0%
!!! TTTTTTTAGCAGTTGTGTCT+GGG - Chr1:88997512-88997531 MsG0180005239.01.T01:intron 30.0%
AAAAGTGATAACAACCACGA+GGG - Chr1:88995862-88995881 MsG0180005239.01.T01:intron 35.0%
AAACATTATCTCACCCTTTC+AGG + Chr1:88998760-88998779 None:intergenic 35.0%
AAGGTAAGATTCCAAACTCA+TGG + Chr1:88996992-88997011 None:intergenic 35.0%
AATTGAAAACCCTTAGTTGC+GGG + Chr1:88997406-88997425 None:intergenic 35.0%
ACAACATATGGAGAATCTCA+TGG - Chr1:88991697-88991716 MsG0180005239.01.T01:three_prime_UTR 35.0%
ACGACTGATGAGTATTACTA+AGG - Chr1:88994946-88994965 MsG0180005239.01.T01:intron 35.0%
ACTAATGCACATTTACCAGT+TGG + Chr1:88995018-88995037 None:intergenic 35.0%
AGCAAGATTACGCAAACAAA+AGG + Chr1:88998354-88998373 None:intergenic 35.0%
AGCTAAAACCATTAGTGTGA+TGG + Chr1:88993790-88993809 None:intergenic 35.0%
ATATCAAAAACCAATGCCAG+GGG - Chr1:88997956-88997975 MsG0180005239.01.T01:intron 35.0%
ATCATCTTCTCTGCATATTC+AGG + Chr1:88995688-88995707 None:intergenic 35.0%
CAAAACAAGATCAACTGTGT+AGG - Chr1:88998172-88998191 MsG0180005239.01.T01:intron 35.0%
CAAGTAGTTAGTTGGTTAGT+TGG + Chr1:88992884-88992903 None:intergenic 35.0%
CATATCAAAAACCAATGCCA+GGG - Chr1:88997955-88997974 MsG0180005239.01.T01:intron 35.0%
CCACCTAAATCAGCTAAAAA+TGG + Chr1:88998414-88998433 None:intergenic 35.0%
CCTAAATCAGCTAAAAATGG+GGG + Chr1:88998411-88998430 None:intergenic 35.0%
CTAAATCAGCTAAAAATGGG+GGG + Chr1:88998410-88998429 None:intergenic 35.0%
CTCATGGTCAATTAAGTCTT+CGG + Chr1:88994446-88994465 None:intergenic 35.0%
CTTACTGTAATAGTCGATGT+CGG + Chr1:88997823-88997842 None:intergenic 35.0%
CTTGGTAAGTGATCATATTC+TGG + Chr1:88993442-88993461 None:intergenic 35.0%
CTTTCAGGACAATGTTAACT+CGG + Chr1:88998745-88998764 None:intergenic 35.0%
GAAAAAGTTTCAGTTCACAG+AGG - Chr1:88994876-88994895 MsG0180005239.01.T01:intron 35.0%
GACTTAGCCAATGATATTTC+TGG + Chr1:88994371-88994390 None:intergenic 35.0%
GAGAACAAAAAAAGGAAAGC+TGG + Chr1:88993853-88993872 None:intergenic 35.0%
GAGTTAACATTGTCCTGAAA+GGG - Chr1:88998744-88998763 MsG0180005239.01.T01:intron 35.0%
GATGGAGAAGAGTAATAGTT+AGG + Chr1:88996254-88996273 None:intergenic 35.0%
GCAGATTTGACAACATTGTA+GGG + Chr1:88993619-88993638 None:intergenic 35.0%
GCATGCAAGTCGATATATAA+AGG + Chr1:88997196-88997215 None:intergenic 35.0%
GCTAAAACCATTAGTGTGAT+GGG + Chr1:88993789-88993808 None:intergenic 35.0%
GGAAATGCCTATAAGATATC+AGG + Chr1:88997218-88997237 None:intergenic 35.0%
GGGTTTATCAAGTAGTTAGT+TGG + Chr1:88992892-88992911 None:intergenic 35.0%
GTGGTCATTAGATAGGAAAT+GGG + Chr1:88992801-88992820 None:intergenic 35.0%
TAAAAGTGATAACAACCACG+AGG - Chr1:88995861-88995880 MsG0180005239.01.T01:intron 35.0%
TACAACCCTGTGTAAAATAC+AGG - Chr1:88996176-88996195 MsG0180005239.01.T01:intron 35.0%
TACACAAGATCAGTATGGAT+AGG + Chr1:88994080-88994099 None:intergenic 35.0%
TAGATCAAAATGGAAAGGTG+AGG - Chr1:88997610-88997629 MsG0180005239.01.T01:intron 35.0%
TATTGTAAAAAGCCCTTTGG+AGG - Chr1:88991843-88991862 MsG0180005239.01.T01:three_prime_UTR 35.0%
TCAATGTTATCAATGGCGAA+TGG + Chr1:88993763-88993782 None:intergenic 35.0%
TCACCCTGTCTATAATATAC+TGG - Chr1:88993085-88993104 MsG0180005239.01.T01:intron 35.0%
TCATCTTCTCTGCATATTCA+GGG + Chr1:88995687-88995706 None:intergenic 35.0%
TCATGGTCAATTAAGTCTTC+GGG + Chr1:88994445-88994464 None:intergenic 35.0%
TCTTGTAAATCAAAGTTCGC+GGG + Chr1:88999084-88999103 None:intergenic 35.0%
TGATACAGCAAAAATCTGGA+AGG + Chr1:88997011-88997030 None:intergenic 35.0%
TGCAGATTTGACAACATTGT+AGG + Chr1:88993620-88993639 None:intergenic 35.0%
TGGAAACTCCAAAAAACCAA+TGG - Chr1:88996919-88996938 MsG0180005239.01.T01:intron 35.0%
TGGATGATACAGCAAAAATC+TGG + Chr1:88997015-88997034 None:intergenic 35.0%
TGGGTGCATATATCAGTAAT+TGG - Chr1:88999155-88999174 MsG0180005239.01.T01:CDS 35.0%
TGGTTGAGCTAACAGATTAA+AGG + Chr1:88994267-88994286 None:intergenic 35.0%
TGTGGTCATTAGATAGGAAA+TGG + Chr1:88992802-88992821 None:intergenic 35.0%
TGTTAGGACATTTGGTAAGA+GGG + Chr1:88992912-88992931 None:intergenic 35.0%
TTAAACCTCTGTTGTCAAAG+CGG + Chr1:88996782-88996801 None:intergenic 35.0%
TTAATTGCAGGAGTTACTAC+AGG - Chr1:88992159-88992178 MsG0180005239.01.T01:CDS 35.0%
TTGACAACATTGTAGGGTAT+AGG + Chr1:88993613-88993632 None:intergenic 35.0%
TTGATATCCCATCACACTAA+TGG - Chr1:88993779-88993798 MsG0180005239.01.T01:CDS 35.0%
TTGCATGCCTGATATCTTAT+AGG - Chr1:88997208-88997227 MsG0180005239.01.T01:intron 35.0%
TTGGTTGCAAAACAATGCAA+AGG + Chr1:88997244-88997263 None:intergenic 35.0%
TTGTGCAAGTACTAGAACAA+GGG - Chr1:88994034-88994053 MsG0180005239.01.T01:intron 35.0%
TTGTTAGGACATTTGGTAAG+AGG + Chr1:88992913-88992932 None:intergenic 35.0%
TTGTTCTAGTACTTGCACAA+AGG + Chr1:88994034-88994053 None:intergenic 35.0%
TTTGTGCAAGTACTAGAACA+AGG - Chr1:88994033-88994052 MsG0180005239.01.T01:intron 35.0%
! AAGGGTTTTCAATTTGGTAG+TGG - Chr1:88997412-88997431 MsG0180005239.01.T01:intron 35.0%
! ACTATATGAACATGGTGTTG+CGG + Chr1:88993713-88993732 None:intergenic 35.0%
! AGACGGTGAGATAATTTTGA+AGG + Chr1:88991814-88991833 None:intergenic 35.0%
! ATTTTCCCAGTAGATTGGAT+CGG + Chr1:88998814-88998833 None:intergenic 35.0%
! CAACTCTAAGGAAGACAAAA+GGG + Chr1:88993566-88993585 None:intergenic 35.0%
! CAATGTTAACTCGGTTCTAA+AGG + Chr1:88998736-88998755 None:intergenic 35.0%
! CACCCATTTCATTTTCAGAA+AGG + Chr1:88999141-88999160 None:intergenic 35.0%
! GCAACTAAGGGTTTTCAATT+TGG - Chr1:88997406-88997425 MsG0180005239.01.T01:intron 35.0%
! GCTTCAAGTTTGTCAAATAC+TGG + Chr1:88997355-88997374 None:intergenic 35.0%
! GGAAATCCTGTATTTTACAC+AGG + Chr1:88996185-88996204 None:intergenic 35.0%
! GTGCCTTTCTGAAAATGAAA+TGG - Chr1:88999135-88999154 MsG0180005239.01.T01:CDS 35.0%
! TATCTAGGATTCCATGAGTT+TGG - Chr1:88996978-88996997 MsG0180005239.01.T01:intron 35.0%
! TGTTGCAGAAAAGCATGAAT+AGG + Chr1:88993879-88993898 None:intergenic 35.0%
! TGTTTCTAATTTGGCTGACA+AGG + Chr1:88999109-88999128 None:intergenic 35.0%
! TTCATTATTTCTCAGGGTCT+TGG - Chr1:88997325-88997344 MsG0180005239.01.T01:intron 35.0%
!! AAGAAAGAAGAAGTGTCATG+TGG + Chr1:88992820-88992839 None:intergenic 35.0%
!! AGGGTTTTCAATTTGGTAGT+GGG - Chr1:88997413-88997432 MsG0180005239.01.T01:intron 35.0%
!! CTACACAGTTGATCTTGTTT+TGG + Chr1:88998174-88998193 None:intergenic 35.0%
!! TTTTCTAGTGATGAGAAGGT+AGG + Chr1:88998944-88998963 None:intergenic 35.0%
!!! CCATTTTTAGCTGATTTAGG+TGG - Chr1:88998411-88998430 MsG0180005239.01.T01:intron 35.0%
!!! TCACACTAATGGTTTTAGCT+TGG - Chr1:88993790-88993809 MsG0180005239.01.T01:CDS 35.0%
!!! TCATATAGTGGACTTTTGGT+TGG - Chr1:88993724-88993743 MsG0180005239.01.T01:intron 35.0%
!!! TTTTTTAGCAGTTGTGTCTG+GGG - Chr1:88997513-88997532 MsG0180005239.01.T01:intron 35.0%
AACCATGACCTTGATTTACG+TGG - Chr1:88992271-88992290 MsG0180005239.01.T01:intron 40.0%
AATCAGGGTGGAATTTCCAA+TGG - Chr1:88997766-88997785 MsG0180005239.01.T01:intron 40.0%
AATCCGCATCAAACATGCAT+TGG + Chr1:88994176-88994195 None:intergenic 40.0%
AATTGAGAACCAGACCTAGT+AGG + Chr1:88993509-88993528 None:intergenic 40.0%
ACAAGATCAGTATGGATAGG+AGG + Chr1:88994077-88994096 None:intergenic 40.0%
ACATAAGTGTGAAAACGGTG+TGG + Chr1:88998148-88998167 None:intergenic 40.0%
ACATATATCCACACCAAACG+GGG + Chr1:88994309-88994328 None:intergenic 40.0%
ACATATGGAGAATCTCATGG+AGG - Chr1:88991700-88991719 MsG0180005239.01.T01:three_prime_UTR 40.0%
ACATGTATCAGTCTCCTTTC+TGG + Chr1:88992040-88992059 None:intergenic 40.0%
ACCATCATCTGATCAGTGTA+CGG - Chr1:88998281-88998300 MsG0180005239.01.T01:intron 40.0%
ACTGAAGAAGGTCTATGAGA+TGG + Chr1:88993276-88993295 None:intergenic 40.0%
ACTGCAAGTTGTTCAACTTG+AGG + Chr1:88992977-88992996 None:intergenic 40.0%
AGAAGCAATCTACAGTGACT+CGG - Chr1:88998542-88998561 MsG0180005239.01.T01:intron 40.0%
AGACAAAAGGGTTAGAAAGC+AGG + Chr1:88993554-88993573 None:intergenic 40.0%
AGGGGAGATATCTAGTAAGT+AGG + Chr1:88994133-88994152 None:intergenic 40.0%
AGGTCATTCTCGTCAAAACA+TGG - Chr1:88995205-88995224 MsG0180005239.01.T01:intron 40.0%
ATAAGTGTGAAAACGGTGTG+GGG + Chr1:88998146-88998165 None:intergenic 40.0%
ATAGAGTGAAATGGCCTACT+AGG - Chr1:88993492-88993511 MsG0180005239.01.T01:intron 40.0%
ATCAGTGCTTTGTCTTGTAC+AGG - Chr1:88997471-88997490 MsG0180005239.01.T01:intron 40.0%
ATGTTGTCAAATCTGCACCA+TGG - Chr1:88993623-88993642 MsG0180005239.01.T01:intron 40.0%
ATTAAAGGAGTTCAAGGTCC+AGG + Chr1:88994252-88994271 None:intergenic 40.0%
ATTCCTCTATAGCCTCCAAA+GGG + Chr1:88991858-88991877 None:intergenic 40.0%
CAACAGAATCACCTTTCACT+CGG + Chr1:88995729-88995748 None:intergenic 40.0%
CAAGCAATATTACAGTCGCA+GGG + Chr1:88996849-88996868 None:intergenic 40.0%
CACATATATCCACACCAAAC+GGG + Chr1:88994310-88994329 None:intergenic 40.0%
CATAAGTGTGAAAACGGTGT+GGG + Chr1:88998147-88998166 None:intergenic 40.0%
CATATGTTGTAACCCGAAAG+TGG + Chr1:88991687-88991706 None:intergenic 40.0%
CATGTATCAGTCTCCTTTCT+GGG + Chr1:88992039-88992058 None:intergenic 40.0%
CCATATCAAAAACCAATGCC+AGG - Chr1:88997954-88997973 MsG0180005239.01.T01:intron 40.0%
CGAGTTAACATTGTCCTGAA+AGG - Chr1:88998743-88998762 MsG0180005239.01.T01:intron 40.0%
CGATGAAGAAGTTGTGTTTG+CGG + Chr1:88996293-88996312 None:intergenic 40.0%
CTGAACTCCTATATTTAGGG+TGG - Chr1:88992486-88992505 MsG0180005239.01.T01:intron 40.0%
CTGAAGAAGGTCTATGAGAT+GGG + Chr1:88993275-88993294 None:intergenic 40.0%
GACACCATACTTCATGTCAT+AGG + Chr1:88992381-88992400 None:intergenic 40.0%
GATAGGCAGCATTTCAGAAA+AGG + Chr1:88998642-88998661 None:intergenic 40.0%
GATCCAGAAGTCCATCAAAT+GGG + Chr1:88993241-88993260 None:intergenic 40.0%
GATGAGATGAGAAGATGAGA+TGG + Chr1:88996331-88996350 None:intergenic 40.0%
GCAACACCATGTTCATATAG+TGG - Chr1:88993712-88993731 MsG0180005239.01.T01:intron 40.0%
GCAACCTATGACATGAAGTA+TGG - Chr1:88992374-88992393 MsG0180005239.01.T01:intron 40.0%
GCACATATATCCACACCAAA+CGG + Chr1:88994311-88994330 None:intergenic 40.0%
GGACTAAAAGATGGTCTTTG+AGG + Chr1:88996825-88996844 None:intergenic 40.0%
GGTCATTCTCGTCAAAACAT+GGG - Chr1:88995206-88995225 MsG0180005239.01.T01:intron 40.0%
GTAAGGTTCTTGTGTATAGG+AGG - Chr1:88991989-88992008 MsG0180005239.01.T01:three_prime_UTR 40.0%
GTACATATGGGAACCACTTT+CGG - Chr1:88991671-88991690 MsG0180005239.01.T01:three_prime_UTR 40.0%
GTGTCATGTGGTCATTAGAT+AGG + Chr1:88992808-88992827 None:intergenic 40.0%
GTGTTGTAACATGCATTGTG+AGG - Chr1:88995752-88995771 MsG0180005239.01.T01:intron 40.0%
TACATATGGGAACCACTTTC+GGG - Chr1:88991672-88991691 MsG0180005239.01.T01:three_prime_UTR 40.0%
TATTCCTCTATAGCCTCCAA+AGG + Chr1:88991859-88991878 None:intergenic 40.0%
TCAAGCAATATTACAGTCGC+AGG + Chr1:88996850-88996869 None:intergenic 40.0%
TCACCAATGCATGTTTGATG+CGG - Chr1:88994170-88994189 MsG0180005239.01.T01:intron 40.0%
TCAGTGCTTTGTCTTGTACA+GGG - Chr1:88997472-88997491 MsG0180005239.01.T01:intron 40.0%
TCCAAGAACTGGATCTCTTA+AGG + Chr1:88999254-88999273 None:intergenic 40.0%
TCCTTAAGAGATCCAGTTCT+TGG - Chr1:88999250-88999269 MsG0180005239.01.T01:intron 40.0%
TCTACCACCACCCTAAATAT+AGG + Chr1:88992496-88992515 None:intergenic 40.0%
TGAAGAAGGTCTATGAGATG+GGG + Chr1:88993274-88993293 None:intergenic 40.0%
TGACAAACTTGAAGCTGAGT+TGG - Chr1:88997360-88997379 MsG0180005239.01.T01:intron 40.0%
TGAGCCAATTTGAAAGACTG+CGG + Chr1:88995490-88995509 None:intergenic 40.0%
TGCAAAACAATGCAAAGGAG+TGG + Chr1:88997239-88997258 None:intergenic 40.0%
TGCACATTTACCAGTTGGAA+TGG + Chr1:88995013-88995032 None:intergenic 40.0%
TGGTGGTTAGTAGAGTGATA+AGG + Chr1:88998061-88998080 None:intergenic 40.0%
TGGTTAGTAGAGTGATAAGG+AGG + Chr1:88998058-88998077 None:intergenic 40.0%
TGTGCAAGTACTAGAACAAG+GGG - Chr1:88994035-88994054 MsG0180005239.01.T01:intron 40.0%
TTAAAGGAGTTCAAGGTCCA+GGG + Chr1:88994251-88994270 None:intergenic 40.0%
TTGGGCACAAATACATGGAT+TGG + Chr1:88992189-88992208 None:intergenic 40.0%
TTGTAGTCAAGCCTGCTTAT+CGG - Chr1:88994649-88994668 MsG0180005239.01.T01:intron 40.0%
! AACTCCTATATTTAGGGTGG+TGG - Chr1:88992489-88992508 MsG0180005239.01.T01:intron 40.0%
! ACAATAGGTGTTGCAGTCAA+TGG + Chr1:88993667-88993686 None:intergenic 40.0%
! ATCTGCAATGTTTCTGCCAT+AGG - Chr1:88993687-88993706 MsG0180005239.01.T01:intron 40.0%
! ATTTTCTCTCTCTCAGCAAG+AGG - Chr1:88993387-88993406 MsG0180005239.01.T01:CDS 40.0%
! CAGTATTGGGCACAAATACA+TGG + Chr1:88992194-88992213 None:intergenic 40.0%
! CCTTTCTGGGAGTTGTAATT+CGG + Chr1:88992026-88992045 None:intergenic 40.0%
! GAGGGGATATAAGGTTGATT+TGG + Chr1:88998081-88998100 None:intergenic 40.0%
! GCAACTCTAAGGAAGACAAA+AGG + Chr1:88993567-88993586 None:intergenic 40.0%
! GCAGAAAAGCATGAATAGGA+AGG + Chr1:88993875-88993894 None:intergenic 40.0%
! GCGAGATGTCATTAGCTTAT+AGG - Chr1:88992336-88992355 MsG0180005239.01.T01:intron 40.0%
! GGTTAGACATGCTGTGTTTT+CGG - Chr1:88998311-88998330 MsG0180005239.01.T01:intron 40.0%
! GTTAGACATGCTGTGTTTTC+GGG - Chr1:88998312-88998331 MsG0180005239.01.T01:intron 40.0%
! TCATTCTGGCTAGTGTTTAG+TGG - Chr1:88999193-88999212 MsG0180005239.01.T01:intron 40.0%
! TGTTTTCAGCTCCCATTTGA+TGG - Chr1:88993227-88993246 MsG0180005239.01.T01:intron 40.0%
! TTAGACATGCTGTGTTTTCG+GGG - Chr1:88998313-88998332 MsG0180005239.01.T01:intron 40.0%
!! AACAACCACGAGGGTTTTAT+CGG - Chr1:88995871-88995890 MsG0180005239.01.T01:intron 40.0%
!! ATTGTTATGGGCACTGAAGA+AGG + Chr1:88993288-88993307 None:intergenic 40.0%
!! CACTTTCGGGTTACAACATA+TGG - Chr1:88991685-88991704 MsG0180005239.01.T01:three_prime_UTR 40.0%
!! CTTTCTAGTTTCCGATAAGC+AGG + Chr1:88994663-88994682 None:intergenic 40.0%
!! GCTTTAGAGGCTTAAAGTGT+CGG - Chr1:88996505-88996524 MsG0180005239.01.T01:intron 40.0%
!! GGGATATAAGGTTGATTTGG+TGG + Chr1:88998078-88998097 None:intergenic 40.0%
!!! CCCCCATTTTTAGCTGATTT+AGG - Chr1:88998408-88998427 MsG0180005239.01.T01:intron 40.0%
!!! CCTGGCATTGGTTTTTGATA+TGG + Chr1:88997957-88997976 None:intergenic 40.0%
AACATCTGCATGCCAAGGAA+TGG + Chr1:88998381-88998400 None:intergenic 45.0%
AATGGCGAATGGCAGAGTAT+GGG + Chr1:88993752-88993771 None:intergenic 45.0%
AGCCACGTAAATCAAGGTCA+TGG + Chr1:88992276-88992295 None:intergenic 45.0%
ATACTCTCAGGAGTTTCGGA+AGG - Chr1:88992063-88992082 MsG0180005239.01.T01:CDS 45.0%
ATGTAGCCGATCCAATCTAC+TGG - Chr1:88998805-88998824 MsG0180005239.01.T01:CDS 45.0%
ATGTCATTGCCCGCAACTAA+GGG - Chr1:88997394-88997413 MsG0180005239.01.T01:intron 45.0%
ATGTGAACATCTGCATGCCA+AGG + Chr1:88998386-88998405 None:intergenic 45.0%
ATTGATGCTGTCCGAGTGAA+AGG - Chr1:88995715-88995734 MsG0180005239.01.T01:intron 45.0%
CACAAGTACCAAAGCTACCA+TGG + Chr1:88999022-88999041 None:intergenic 45.0%
CAGGAATTCGACTTCAGAGA+TGG + Chr1:88995605-88995624 None:intergenic 45.0%
CATTTCCGCTTTGACAACAG+AGG - Chr1:88996774-88996793 MsG0180005239.01.T01:intron 45.0%
CCATCATCTGATCAGTGTAC+GGG - Chr1:88998282-88998301 MsG0180005239.01.T01:intron 45.0%
CCGAATTACAACTCCCAGAA+AGG - Chr1:88992023-88992042 MsG0180005239.01.T01:three_prime_UTR 45.0%
CGAGTGAAAGGTGATTCTGT+TGG - Chr1:88995727-88995746 MsG0180005239.01.T01:intron 45.0%
CGCAATTGCGGGTATAAAGT+GGG - Chr1:88996125-88996144 MsG0180005239.01.T01:intron 45.0%
CTGTTGTCAAAGCGGAAATG+CGG + Chr1:88996774-88996793 None:intergenic 45.0%
CTTGCCGCAGTCTTTCAAAT+TGG - Chr1:88995483-88995502 MsG0180005239.01.T01:CDS 45.0%
GAAGAAGGTCTATGAGATGG+GGG + Chr1:88993273-88993292 None:intergenic 45.0%
GAAGCAATCTACAGTGACTC+GGG - Chr1:88998543-88998562 MsG0180005239.01.T01:intron 45.0%
GAGAGAGAGAGAGAGGATAT+TGG + Chr1:88997847-88997866 None:intergenic 45.0%
GAGGTGAAAAGACTTACACG+TGG + Chr1:88995784-88995803 None:intergenic 45.0%
GAGTGAATTCACGAGTCACT+TGG - Chr1:88993412-88993431 MsG0180005239.01.T01:intron 45.0%
GATAGGAAATGGGAGCCTTT+CGG + Chr1:88992791-88992810 None:intergenic 45.0%
GATCAAGTGTCAGTGTCTCA+TGG + Chr1:88994462-88994481 None:intergenic 45.0%
GATCAGTATGGATAGGAGGA+TGG + Chr1:88994073-88994092 None:intergenic 45.0%
GCATATCAGCTTCAGAGAGA+GGG + Chr1:88991765-88991784 None:intergenic 45.0%
GCTGTGCTCTTTGGTTATCT+AGG - Chr1:88996963-88996982 MsG0180005239.01.T01:intron 45.0%
GGATCCAGAAGTCCATCAAA+TGG + Chr1:88993242-88993261 None:intergenic 45.0%
GGTACTTGTGGACCAATTGA+TGG - Chr1:88999032-88999051 MsG0180005239.01.T01:intron 45.0%
GTAGATTGCTTCTTCTGCAC+AGG + Chr1:88998535-88998554 None:intergenic 45.0%
GTGAAAGGTGATTCTGTTGG+TGG - Chr1:88995730-88995749 MsG0180005239.01.T01:intron 45.0%
GTGCATGTTGTGCCATCAAT+TGG + Chr1:88999047-88999066 None:intergenic 45.0%
GTGCCCAATACTGATCAAAG+AGG - Chr1:88992201-88992220 MsG0180005239.01.T01:intron 45.0%
GTGTTCACTCCCAGTCAAAA+AGG + Chr1:88997574-88997593 None:intergenic 45.0%
TAAGTGTGAAAACGGTGTGG+GGG + Chr1:88998145-88998164 None:intergenic 45.0%
TATGAGATGGGGGAAAGAGA+CGG + Chr1:88993263-88993282 None:intergenic 45.0%
TATGGAGAATCTCATGGAGG+AGG - Chr1:88991703-88991722 MsG0180005239.01.T01:three_prime_UTR 45.0%
TATGTCATTGCCCGCAACTA+AGG - Chr1:88997393-88997412 MsG0180005239.01.T01:intron 45.0%
TCTTCTGCTAGGGAAACCAT+TGG - Chr1:88992516-88992535 MsG0180005239.01.T01:intron 45.0%
TGAGACACTGACACTTGATC+AGG - Chr1:88994462-88994481 MsG0180005239.01.T01:intron 45.0%
TGATCAGTGTACGGGATGTA+TGG - Chr1:88998290-88998309 MsG0180005239.01.T01:intron 45.0%
TGCAAGAGGATCTTGACAGA+AGG - Chr1:88991782-88991801 MsG0180005239.01.T01:three_prime_UTR 45.0%
TGCATATCAGCTTCAGAGAG+AGG + Chr1:88991766-88991785 None:intergenic 45.0%
TGCTAGGGAAACCATTGGAA+GGG - Chr1:88992521-88992540 MsG0180005239.01.T01:intron 45.0%
TGGTGGTAGATCTTCTGCTA+GGG - Chr1:88992506-88992525 MsG0180005239.01.T01:intron 45.0%
TGTAGCCGATCCAATCTACT+GGG - Chr1:88998806-88998825 MsG0180005239.01.T01:CDS 45.0%
TGTCAAATCTGCACCATGGT+GGG - Chr1:88993627-88993646 MsG0180005239.01.T01:intron 45.0%
TGTGTTTGCGGCTGTGTATT+TGG + Chr1:88996281-88996300 None:intergenic 45.0%
TTCTCTGCATATTCAGGGTC+TGG + Chr1:88995682-88995701 None:intergenic 45.0%
TTGGACTGCATGTCGTATTC+TGG - Chr1:88999269-88999288 MsG0180005239.01.T01:intron 45.0%
TTGTCAAATCTGCACCATGG+TGG - Chr1:88993626-88993645 MsG0180005239.01.T01:intron 45.0%
! ATAGGTGTTGCAGTCAATGG+TGG + Chr1:88993664-88993683 None:intergenic 45.0%
! ATCTTGCTGCTTCCATTCCT+TGG - Chr1:88998366-88998385 MsG0180005239.01.T01:intron 45.0%
! GCGTTGCGTTTTTCCGTTTT+TGG + Chr1:88996062-88996081 None:intergenic 45.0%
! GGTGTTGGATGTGTCATTGA+TGG - Chr1:88991724-88991743 MsG0180005239.01.T01:three_prime_UTR 45.0%
! GTATGGTGTCAGATCAGTTC+AGG - Chr1:88992391-88992410 MsG0180005239.01.T01:intron 45.0%
! GTCTGAACAGAAGAGCATGA+CGG + Chr1:88995458-88995477 None:intergenic 45.0%
! GTTGCGCTCAAGTTCTAACT+TGG - Chr1:88997988-88998007 MsG0180005239.01.T01:intron 45.0%
! GTTGTAATTCGGCTTTGACC+TGG + Chr1:88992015-88992034 None:intergenic 45.0%
! TGGAAGCTTGCTTACCAGTT+TGG - Chr1:88993968-88993987 MsG0180005239.01.T01:intron 45.0%
!! ACAACCACGAGGGTTTTATC+GGG - Chr1:88995872-88995891 MsG0180005239.01.T01:intron 45.0%
!! ACCAGTTTGGTGTCACCAAA+AGG - Chr1:88993981-88994000 MsG0180005239.01.T01:intron 45.0%
!! ACCTTTTGGTGACACCAAAC+TGG + Chr1:88993985-88994004 None:intergenic 45.0%
!! AGAGGAGGTTTTGGCAAAAG+TGG + Chr1:88993903-88993922 None:intergenic 45.0%
!! CAATTTGGTAGTGGGTTTGC+AGG - Chr1:88997421-88997440 MsG0180005239.01.T01:intron 45.0%
!! CATCTCTGAAGTCGAATTCC+TGG - Chr1:88995603-88995622 MsG0180005239.01.T01:intron 45.0%
!! CATGGTAGCTTTGGTACTTG+TGG - Chr1:88999020-88999039 MsG0180005239.01.T01:intron 45.0%
!! CTCTGAAGCTGATATGCAAG+AGG - Chr1:88991768-88991787 MsG0180005239.01.T01:three_prime_UTR 45.0%
!! GATATGATGGATGACTGCAG+AGG + Chr1:88993921-88993940 None:intergenic 45.0%
!! GGCTGTGTATTTGGTTCTGA+TGG + Chr1:88996272-88996291 None:intergenic 45.0%
!! TGTTTTCGGGGTAGCAATTG+AGG - Chr1:88998325-88998344 MsG0180005239.01.T01:intron 45.0%
!! TTATTTGATATTTAAATAAT+AGG - Chr1:88997101-88997120 MsG0180005239.01.T01:intron 5.0%
!!! TTATTTTTAATACTTTTTTA+TGG - Chr1:88994599-88994618 MsG0180005239.01.T01:intron 5.0%
AAGGTCCAGGGTTCGAATCT+TGG + Chr1:88994239-88994258 None:intergenic 50.0%
ACAAGAACAAACCGCTCTGG+TGG - Chr1:88997633-88997652 MsG0180005239.01.T01:intron 50.0%
ACCAGAAGCAACCCTTCCAA+TGG + Chr1:88992535-88992554 None:intergenic 50.0%
ACCATTGGAAGGGTTGCTTC+TGG - Chr1:88992531-88992550 MsG0180005239.01.T01:intron 50.0%
ACGACATGCAGTCCAAGAAC+TGG + Chr1:88999265-88999284 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + Chr1:88997852-88997871 None:intergenic 50.0%
AGCTTATAGGCCTTCCCATG+CGG - Chr1:88992349-88992368 MsG0180005239.01.T01:intron 50.0%
AGGACAAGAACAAACCGCTC+TGG - Chr1:88997630-88997649 MsG0180005239.01.T01:intron 50.0%
AGGCTGAGATACCAACCTCT+CGG + Chr1:88998622-88998641 None:intergenic 50.0%
ATACCTGTATCCCACCAGAG+CGG + Chr1:88997647-88997666 None:intergenic 50.0%
ATATCCACACCAAACGGGGA+GGG + Chr1:88994305-88994324 None:intergenic 50.0%
ATGGCGAATGGCAGAGTATG+GGG + Chr1:88993751-88993770 None:intergenic 50.0%
CAAGAACAAACCGCTCTGGT+GGG - Chr1:88997634-88997653 MsG0180005239.01.T01:intron 50.0%
CAATGGCGAATGGCAGAGTA+TGG + Chr1:88993753-88993772 None:intergenic 50.0%
CAGGGTTCGAATCTTGGCAA+GGG + Chr1:88994233-88994252 None:intergenic 50.0%
CCCGTACACTGATCAGATGA+TGG + Chr1:88998285-88998304 None:intergenic 50.0%
CCTATGTCTCTCAAGTGCAC+AGG - Chr1:88994410-88994429 MsG0180005239.01.T01:intron 50.0%
CCTGTGCACTTGAGAGACAT+AGG + Chr1:88994413-88994432 None:intergenic 50.0%
CTCATTTACTCCCCTGGCAT+TGG + Chr1:88997969-88997988 None:intergenic 50.0%
CTGCTAGGGAAACCATTGGA+AGG - Chr1:88992520-88992539 MsG0180005239.01.T01:intron 50.0%
GCAATATTACAGTCGCAGGG+TGG + Chr1:88996846-88996865 None:intergenic 50.0%
GCGCAATTGCGGGTATAAAG+TGG - Chr1:88996124-88996143 MsG0180005239.01.T01:intron 50.0%
GGCTAACACAAAACCCACCA+TGG + Chr1:88993643-88993662 None:intergenic 50.0%
GTCATAGGTTGCATCCGCAT+GGG + Chr1:88992366-88992385 None:intergenic 50.0%
GTGAAATGGCCTACTAGGTC+TGG - Chr1:88993497-88993516 MsG0180005239.01.T01:intron 50.0%
GTGGTGGTAGATCTTCTGCT+AGG - Chr1:88992505-88992524 MsG0180005239.01.T01:intron 50.0%
GTTCTTGTGTATAGGAGGCC+AGG - Chr1:88991994-88992013 MsG0180005239.01.T01:three_prime_UTR 50.0%
GTTTCCCGATAAAACCCTCG+TGG + Chr1:88995879-88995898 None:intergenic 50.0%
TATATCCACACCAAACGGGG+AGG + Chr1:88994306-88994325 None:intergenic 50.0%
TATCAGCTTCAGAGAGAGGG+AGG + Chr1:88991762-88991781 None:intergenic 50.0%
TGAACTTGCAGCTGTACCCA+TGG - Chr1:88998990-88999009 MsG0180005239.01.T01:CDS 50.0%
TGTCATAGGTTGCATCCGCA+TGG + Chr1:88992367-88992386 None:intergenic 50.0%
TTACAGAGATTCGGGCAGCT+GGG - Chr1:88991647-88991666 MsG0180005239.01.T01:three_prime_UTR 50.0%
TTGTCAATAGTGGCCGATCG+CGG - Chr1:88996031-88996050 MsG0180005239.01.T01:intron 50.0%
TTTACAGAGATTCGGGCAGC+TGG - Chr1:88991646-88991665 MsG0180005239.01.T01:three_prime_UTR 50.0%
TTTGGAGAAAGCGGCTGAAG+CGG - Chr1:88996101-88996120 MsG0180005239.01.T01:intron 50.0%
! AAGCCCTTTGGAGGCTATAG+AGG - Chr1:88991852-88991871 MsG0180005239.01.T01:three_prime_UTR 50.0%
! CTCAGACTAGCTGTGCTCTT+TGG - Chr1:88996954-88996973 MsG0180005239.01.T01:intron 50.0%
! GAATCTCATGGAGGAGGTGT+TGG - Chr1:88991709-88991728 MsG0180005239.01.T01:three_prime_UTR 50.0%
! GATGACTGCAGAGGAGGTTT+TGG + Chr1:88993912-88993931 None:intergenic 50.0%
!! ATGATGGATGACTGCAGAGG+AGG + Chr1:88993918-88993937 None:intergenic 50.0%
!! GCTCCCATTTGATGGACTTC+TGG - Chr1:88993235-88993254 MsG0180005239.01.T01:intron 50.0%
!! TCGCAGGGTGGACTAAAAGA+TGG + Chr1:88996834-88996853 None:intergenic 50.0%
AAACCGCTCTGGTGGGATAC+AGG - Chr1:88997641-88997660 MsG0180005239.01.T01:intron 55.0%
ACAGGGATCATGACGACCAC+GGG + Chr1:88998593-88998612 None:intergenic 55.0%
AGCGGGCACTATTTCGGTGA+CGG + Chr1:88996702-88996721 None:intergenic 55.0%
AGCTACCATGGCCTCTACCA+TGG + Chr1:88999010-88999029 None:intergenic 55.0%
CAACCTCTCGGGACAACACA+GGG + Chr1:88998610-88998629 None:intergenic 55.0%
CACAGGGATCATGACGACCA+CGG + Chr1:88998594-88998613 None:intergenic 55.0%
CCAGGGTTCGAATCTTGGCA+AGG + Chr1:88994234-88994253 None:intergenic 55.0%
CCTTGCCAAGATTCGAACCC+TGG - Chr1:88994231-88994250 MsG0180005239.01.T01:intron 55.0%
CTGGGTCAAGCGCAACTCTA+AGG + Chr1:88993578-88993597 None:intergenic 55.0%
GAAACAGAGCTCATAGCCCG+TGG - Chr1:88998574-88998593 MsG0180005239.01.T01:intron 55.0%
GAAATGGGAGCCTTTCGGCA+GGG + Chr1:88992786-88992805 None:intergenic 55.0%
GCGCAACTCATTTACTCCCC+TGG + Chr1:88997975-88997994 None:intergenic 55.0%
GCTACCATGGCCTCTACCAT+GGG + Chr1:88999009-88999028 None:intergenic 55.0%
GGCCACCCCAAAAATTGACG+CGG + Chr1:88996743-88996762 None:intergenic 55.0%
GGCTGAGATACCAACCTCTC+GGG + Chr1:88998621-88998640 None:intergenic 55.0%
GGTAGAGGCCATGGTAGCTT+TGG - Chr1:88999011-88999030 MsG0180005239.01.T01:intron 55.0%
GGTATAAAGTGGGCGCGATG+CGG - Chr1:88996135-88996154 MsG0180005239.01.T01:intron 55.0%
GTATAAAGTGGGCGCGATGC+GGG - Chr1:88996136-88996155 MsG0180005239.01.T01:intron 55.0%
TAGGTTGCATCCGCATGGGA+AGG + Chr1:88992362-88992381 None:intergenic 55.0%
TATCCACACCAAACGGGGAG+GGG + Chr1:88994304-88994323 None:intergenic 55.0%
TGCAGCTGTACCCATGGTAG+AGG - Chr1:88998996-88999015 MsG0180005239.01.T01:CDS 55.0%
TGTACCCATGGTAGAGGCCA+TGG - Chr1:88999002-88999021 MsG0180005239.01.T01:intron 55.0%
TTGGAGAAAGCGGCTGAAGC+GGG - Chr1:88996102-88996121 MsG0180005239.01.T01:intron 55.0%
TTTCTCCAAACGCTCCGCGT+TGG + Chr1:88996091-88996110 None:intergenic 55.0%
! GGGCAGCTGGGAGTACATAT+GGG - Chr1:88991659-88991678 MsG0180005239.01.T01:three_prime_UTR 55.0%
!! GAACATGGTGTTGCGGCCTA+TGG + Chr1:88993706-88993725 None:intergenic 55.0%
ACACCAAACGGGGAGGGGAT+GGG + Chr1:88994299-88994318 None:intergenic 60.0%
CCAAAAATTGACGCGGCGCG+GGG + Chr1:88996736-88996755 None:intergenic 60.0%
CCAACCTCTCGGGACAACAC+AGG + Chr1:88998611-88998630 None:intergenic 60.0%
CCCAAAAATTGACGCGGCGC+GGG + Chr1:88996737-88996756 None:intergenic 60.0%
CCCCAAAAATTGACGCGGCG+CGG + Chr1:88996738-88996757 None:intergenic 60.0%
CCTGTGTTGTCCCGAGAGGT+TGG - Chr1:88998608-88998627 MsG0180005239.01.T01:CDS 60.0%
CGGGCACTATTTCGGTGACG+GGG + Chr1:88996700-88996719 None:intergenic 60.0%
GAGGGGATGGGTAGCTCACT+TGG + Chr1:88994287-88994306 None:intergenic 60.0%
GATCCCTGTGTTGTCCCGAG+AGG - Chr1:88998604-88998623 MsG0180005239.01.T01:CDS 60.0%
GCGGGCACTATTTCGGTGAC+GGG + Chr1:88996701-88996720 None:intergenic 60.0%
GGAAATGGGAGCCTTTCGGC+AGG + Chr1:88992787-88992806 None:intergenic 60.0%
GTGTGAAAACGGTGTGGGGG+CGG + Chr1:88998142-88998161 None:intergenic 60.0%
TCTGCAACCTCCCTGCCGAA+AGG - Chr1:88992773-88992792 MsG0180005239.01.T01:intron 60.0%
TGTGAAAACGGTGTGGGGGC+GGG + Chr1:88998141-88998160 None:intergenic 60.0%
! CCCGCGCCGCGTCAATTTTT+GGG - Chr1:88996734-88996753 MsG0180005239.01.T01:CDS 60.0%
! CCGCGCCGCGTCAATTTTTG+GGG - Chr1:88996735-88996754 MsG0180005239.01.T01:CDS 60.0%
! CGCGGAGCGTTTGGAGAAAG+CGG - Chr1:88996092-88996111 MsG0180005239.01.T01:intron 60.0%
! CGGGCAGCTGGGAGTACATA+TGG - Chr1:88991658-88991677 MsG0180005239.01.T01:three_prime_UTR 60.0%
!! CGCCGCGTCAATTTTTGGGG+TGG - Chr1:88996738-88996757 MsG0180005239.01.T01:CDS 60.0%
!! GCGCGTAGCGGGCACTATTT+CGG + Chr1:88996708-88996727 None:intergenic 60.0%
AATAGTGGCCGATCGCGGCG+CGG - Chr1:88996036-88996055 MsG0180005239.01.T01:intron 65.0%
ATGGGAGCCTTTCGGCAGGG+AGG + Chr1:88992783-88992802 None:intergenic 65.0%
CACACCAAACGGGGAGGGGA+TGG + Chr1:88994300-88994319 None:intergenic 65.0%
CGCAACGCAGCTCTCCAACG+CGG - Chr1:88996074-88996093 MsG0180005239.01.T01:intron 65.0%
CTACCCATCCCCTCCCCGTT+TGG - Chr1:88994293-88994312 MsG0180005239.01.T01:intron 65.0%
GATCGCGGCGCGGCCAAAAA+CGG - Chr1:88996046-88996065 MsG0180005239.01.T01:intron 65.0%
GCTGAAGCGGGCGCAATTGC+GGG - Chr1:88996114-88996133 MsG0180005239.01.T01:intron 65.0%
GCTTCAGAGAGAGGGAGGCG+AGG + Chr1:88991757-88991776 None:intergenic 65.0%
GGCTGAAGCGGGCGCAATTG+CGG - Chr1:88996113-88996132 MsG0180005239.01.T01:intron 65.0%
TCAGAGAGAGGGAGGCGAGG+AGG + Chr1:88991754-88991773 None:intergenic 65.0%
! CATCCCCTCCCCGTTTGGTG+TGG - Chr1:88994298-88994317 MsG0180005239.01.T01:intron 65.0%
! CCCCGCGCCGCGTCAATTTT+TGG - Chr1:88996733-88996752 MsG0180005239.01.T01:CDS 65.0%
! GCTCTCCAACGCGGAGCGTT+TGG - Chr1:88996083-88996102 MsG0180005239.01.T01:intron 65.0%
!!! GTTTTTGGCCGCGCCGCGAT+CGG + Chr1:88996047-88996066 None:intergenic 65.0%
AATTGACGCGGCGCGGGGTG+CGG + Chr1:88996731-88996750 None:intergenic 70.0%
AGCGGAAATGCGGCGCGACG+CGG + Chr1:88996764-88996783 None:intergenic 70.0%
GGCGCGATGCGGGTCAAAGC+GGG - Chr1:88996146-88996165 MsG0180005239.01.T01:intron 70.0%
GGGCGCGATGCGGGTCAAAG+CGG - Chr1:88996145-88996164 MsG0180005239.01.T01:intron 70.0%
ATTGACGCGGCGCGGGGTGC+GGG + Chr1:88996730-88996749 None:intergenic 75.0%
! CGCGGGGTGCGGGCGCGTAG+CGG + Chr1:88996720-88996739 None:intergenic 85.0%
! GCGGGGTGCGGGCGCGTAGC+GGG + Chr1:88996719-88996738 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
Chr1 gene 88991640 88999549 88991640 ID=MsG0180005239.01;Name=MsG0180005239.01
Chr1 mRNA 88991640 88999549 88991640 ID=MsG0180005239.01.T01;Parent=MsG0180005239.01;Name=MsG0180005239.01.T01;_AED=0.41;_eAED=0.41;_QI=0|1|0.91|1|1|1|12|403|394
Chr1 exon 88991640 88992188 88991640 ID=MsG0180005239.01.T01:exon:14465;Parent=MsG0180005239.01.T01
Chr1 exon 88992564 88992648 88992564 ID=MsG0180005239.01.T01:exon:14464;Parent=MsG0180005239.01.T01
Chr1 exon 88993352 88993417 88993352 ID=MsG0180005239.01.T01:exon:14463;Parent=MsG0180005239.01.T01
Chr1 exon 88993527 88993621 88993527 ID=MsG0180005239.01.T01:exon:14462;Parent=MsG0180005239.01.T01
Chr1 exon 88993747 88993849 88993747 ID=MsG0180005239.01.T01:exon:14461;Parent=MsG0180005239.01.T01
Chr1 exon 88995403 88995534 88995403 ID=MsG0180005239.01.T01:exon:14460;Parent=MsG0180005239.01.T01
Chr1 exon 88996706 88996786 88996706 ID=MsG0180005239.01.T01:exon:14459;Parent=MsG0180005239.01.T01
Chr1 exon 88998593 88998685 88998593 ID=MsG0180005239.01.T01:exon:14458;Parent=MsG0180005239.01.T01
Chr1 exon 88998777 88998860 88998777 ID=MsG0180005239.01.T01:exon:14457;Parent=MsG0180005239.01.T01
Chr1 exon 88998962 88999020 88998962 ID=MsG0180005239.01.T01:exon:14456;Parent=MsG0180005239.01.T01
Chr1 exon 88999105 88999181 88999105 ID=MsG0180005239.01.T01:exon:14455;Parent=MsG0180005239.01.T01
Chr1 exon 88999386 88999549 88999386 ID=MsG0180005239.01.T01:exon:14454;Parent=MsG0180005239.01.T01
Chr1 CDS 88999386 88999549 88999386 ID=MsG0180005239.01.T01:cds;Parent=MsG0180005239.01.T01
Chr1 CDS 88999105 88999181 88999105 ID=MsG0180005239.01.T01:cds;Parent=MsG0180005239.01.T01
Chr1 CDS 88998962 88999020 88998962 ID=MsG0180005239.01.T01:cds;Parent=MsG0180005239.01.T01
Chr1 CDS 88998777 88998860 88998777 ID=MsG0180005239.01.T01:cds;Parent=MsG0180005239.01.T01
Chr1 CDS 88998593 88998685 88998593 ID=MsG0180005239.01.T01:cds;Parent=MsG0180005239.01.T01
Chr1 CDS 88996706 88996786 88996706 ID=MsG0180005239.01.T01:cds;Parent=MsG0180005239.01.T01
Chr1 CDS 88995403 88995534 88995403 ID=MsG0180005239.01.T01:cds;Parent=MsG0180005239.01.T01
Chr1 CDS 88993747 88993849 88993747 ID=MsG0180005239.01.T01:cds;Parent=MsG0180005239.01.T01
Chr1 CDS 88993527 88993621 88993527 ID=MsG0180005239.01.T01:cds;Parent=MsG0180005239.01.T01
Chr1 CDS 88993352 88993417 88993352 ID=MsG0180005239.01.T01:cds;Parent=MsG0180005239.01.T01
Chr1 CDS 88992564 88992648 88992564 ID=MsG0180005239.01.T01:cds;Parent=MsG0180005239.01.T01
Chr1 CDS 88992043 88992188 88992043 ID=MsG0180005239.01.T01:cds;Parent=MsG0180005239.01.T01
Chr1 three_prime_UTR 88991640 88992042 88991640 ID=MsG0180005239.01.T01:three_prime_utr;Parent=MsG0180005239.01.T01
Gene Sequence

>MsG0180005239.01.T01

ATGTATTTTACAGAGATTCGGGCAGCTGGGAGTACATATGGGAACCACTTTCGGGTTACAACATATGGAGAATCTCATGGAGGAGGTGTTGGATGTGTCATTGATGGATGTCCTCCTCGCCTCCCTCTCTCTGAAGCTGATATGCAAGAGGATCTTGACAGAAGGAGGCCAGGTCAAAGCCGAATTACAACTCCCAGAAAGGAGACTGATACATGTAAAATACTCTCAGGAGTTTCGGAAGGAGTTACTACAGGAACTCCAATCCATGTATTTGTGCCCAATACTGATCAAAGAGGAAATGATTATAGCGAGATGTCATTAGCTTATAGGCCTTCCCATGCGGATGCAACCTATGACATGAAGTATGGTGTCAGATCAGTTCAGGGTGGTGGTAGATCTTCTGCTAGGGAAACCATTGGAAGGGTTGCTTCTGGTGCTGTTGCTAAGAAAATCCTTAAAAAATTTGCAGGAACTGAGATTCTTGCCTATGTCTCTCAAGTGCACAGGATTATTCTTCCCGAAGACTTAATTGACCATGAGACACTGACACTTGATCAGATTGAGAGTAATATTGTTCGATGTCCAGACCCTGAATATGCAGAGAAGATGATATCTGCTATTGATGCTGTCCGAGTGAAAGGTGATTCTGTTGGTGGTGTTGTAACATGCATTGTGAGGAACTGTCCACGTGGTCTTGGTTCACCAGTATTTGACAAACTTGAAGCTGAGTTGGCTAAAGCTGCTATGTCATTGCCCGCAACTAAGGGTTTTCAATTTGGTAGTGGGTTTGCAGGTACCTTTTTGACTGGGAGTGAACACAATGATGAATTTTATATAGATCAAAATGGAAAGGTGAGGACAAGAACAAACCGCTCTGGTGGGATACAGGGTGGAATTTCCAATGGAGAAATAATTAACATGAGAATAGGTTTCAAGCCGACATCGACTATTACAAAGAAGCAATCTACAGTGACTCGGGATAAGAAAGAAACAGAGCTCATAGCCCGTGGTCGTCATGATCCCTGTGTTGTCCCGAGAGCTGTACCCATGGTAGAGGCCATGGTAGCTTTGGTACTTGTGGACCAATTGATGGCACAACATGCACAGTGTAATCTATTTCCCGCGAACTTTGATTTACAAGAATCCTTGTCAGCCAAATTAGAAACAGAAGAAGTGCCTTTCTGA
Protein sequence

>MsG0180005239.01.T01

MYFTEIRAAGSTYGNHFRVTTYGESHGGGVGCVIDGCPPRLPLSEADMQEDLDRRRPGQSRITTPRKETDTCKILSGVSEGVTTGTPIHVFVPNTDQRGNDYSEMSLAYRPSHADATYDMKYGVRSVQGGGRSSARETIGRVASGAVAKKILKKFAGTEILAYVSQVHRIILPEDLIDHETLTLDQIESNIVRCPDPEYAEKMISAIDAVRVKGDSVGGVVTCIVRNCPRGLGSPVFDKLEAELAKAAMSLPATKGFQFGSGFAGTFLTGSEHNDEFYIDQNGKVRTRTNRSGGIQGGISNGEIINMRIGFKPTSTITKKQSTVTRDKKETELIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQHAQCNLFPANFDLQESLSAKLETEEVPF*