AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005251.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005251.01.T01 MTR_1g495705 82.888 374 10 4 1 321 1 373 0.0 610
MsG0180005251.01.T01 MTR_1g095650 82.888 374 10 4 1 321 1 373 0.0 610
MsG0180005251.01.T01 MTR_1g095703 82.888 374 10 4 1 321 1 373 0.0 610
MsG0180005251.01.T01 MTR_4g014810 82.086 374 13 4 1 321 1 373 0.0 608
MsG0180005251.01.T01 MTR_6g021800 82.086 374 13 4 1 321 1 373 0.0 607
MsG0180005251.01.T01 MTR_6g021805 82.086 374 13 4 1 321 1 373 0.0 607
MsG0180005251.01.T01 MTR_1g013680 80.637 377 16 5 1 321 1 376 0.0 587
MsG0180005251.01.T01 MTR_1g085410 69.973 373 58 4 1 320 1 372 1.86e-180 513
MsG0180005251.01.T01 MTR_1g101870 65.542 415 78 7 1 364 1 401 1.26e-175 514
MsG0180005251.01.T01 MTR_1g101870 65.542 415 78 7 1 364 1 401 2.20e-175 516
MsG0180005251.01.T01 MTR_1g024175 66.398 372 71 4 1 319 1 371 1.80e-170 489
MsG0180005251.01.T01 MTR_8g014590 65.641 390 78 5 1 335 1 389 3.77e-165 475
MsG0180005251.01.T01 MTR_2g082730 62.667 375 69 6 1 320 1 359 2.17e-150 440
MsG0180005251.01.T01 MTR_1g089520 60.377 371 71 7 4 318 5 355 6.84e-146 429
MsG0180005251.01.T01 MTR_5g037350 56.341 410 88 5 3 322 13 421 8.23e-145 427
MsG0180005251.01.T01 MTR_8g008740 65.231 325 59 4 1 271 1 325 3.52e-141 415
MsG0180005251.01.T01 MTR_1g095650 76.557 273 10 4 102 321 1 272 1.07e-137 401
MsG0180005251.01.T01 MTR_2g082665 56.800 375 65 6 1 320 1 333 2.36e-128 383
MsG0180005251.01.T01 MTR_2g080210 59.942 347 109 7 1 321 1 343 3.25e-127 377
MsG0180005251.01.T01 MTR_8g013910 54.103 390 92 8 1 322 1 371 1.80e-126 375
MsG0180005251.01.T01 MTR_2g037420 53.867 375 76 6 1 320 1 333 3.15e-121 363
MsG0180005251.01.T01 MTR_1g095640 89.266 177 15 2 322 495 1 176 2.22e-103 316
MsG0180005251.01.T01 MTR_1g101880 87.013 154 20 0 1 154 1 154 4.04e-89 274
MsG0180005251.01.T01 MTR_1g024165 81.429 140 26 0 6 145 10 149 8.39e-78 240
MsG0180005251.01.T01 MTR_1g112460 60.753 186 38 3 155 314 1 177 6.95e-65 211
MsG0180005251.01.T01 MTR_8g087950 43.529 255 116 5 7 235 275 527 1.47e-61 214
MsG0180005251.01.T01 MTR_8g087950 43.701 254 115 5 8 235 349 600 3.12e-61 214
MsG0180005251.01.T01 MTR_6g080420 33.687 377 184 9 5 321 89 459 2.18e-60 207
MsG0180005251.01.T01 MTR_8g106700 34.771 371 180 9 4 316 43 409 2.22e-59 203
MsG0180005251.01.T01 MTR_8g106700 34.771 371 180 9 4 316 49 415 2.47e-59 203
MsG0180005251.01.T01 MTR_8g106700 34.771 371 180 9 4 316 70 436 3.53e-59 203
MsG0180005251.01.T01 MTR_8g014950 77.228 101 23 0 3 103 4 104 3.63e-48 162
MsG0180005251.01.T01 MTR_4g054970 45.665 173 58 3 172 309 50 221 2.54e-35 133
MsG0180005251.01.T01 MTR_4g054970 75.000 44 11 0 1 44 1 44 6.12e-13 69.7
MsG0180005251.01.T01 MTR_1g495735 52.083 144 26 3 219 320 106 248 1.60e-33 129
MsG0180005251.01.T01 MTR_1g495735 74.510 51 13 0 21 71 2 52 5.30e-17 82.0
MsG0180005251.01.T01 MTR_2g021300 34.118 255 121 6 3 236 46 274 5.02e-33 130
MsG0180005251.01.T01 MTR_7g098190 47.561 164 45 5 56 199 10 152 1.16e-31 120
MsG0180005251.01.T01 MTR_7g094460 33.463 257 120 7 3 236 59 287 1.30e-31 127
MsG0180005251.01.T01 MTR_3g076660 31.179 263 126 8 3 236 88 324 4.60e-27 114
MsG0180005251.01.T01 MTR_8g014960 75.000 44 11 0 192 235 2 45 1.58e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005251.01.T01 AT5G60390 76.271 413 39 6 1 360 1 407 0.0 603
MsG0180005251.01.T01 AT5G60390 76.271 413 39 6 1 360 1 407 0.0 603
MsG0180005251.01.T01 AT5G60390 76.271 413 39 6 1 360 1 407 0.0 603
MsG0180005251.01.T01 AT1G07920 76.271 413 39 6 1 360 1 407 0.0 603
MsG0180005251.01.T01 AT1G07940 76.271 413 39 6 1 360 1 407 0.0 603
MsG0180005251.01.T01 AT1G07940 76.271 413 39 6 1 360 1 407 0.0 603
MsG0180005251.01.T01 AT1G07940 76.271 413 39 6 1 360 1 407 0.0 603
MsG0180005251.01.T01 AT1G07940 76.271 413 39 6 1 360 1 407 0.0 603
MsG0180005251.01.T01 AT1G07930 76.271 413 39 6 1 360 1 407 0.0 603
MsG0180005251.01.T01 AT1G07930 73.228 381 30 5 1 360 1 330 0.0 530
MsG0180005251.01.T01 AT1G18070 33.155 374 190 7 5 321 99 469 1.27e-57 200
MsG0180005251.01.T01 AT1G18070 33.155 374 190 7 5 321 99 469 1.27e-57 200
MsG0180005251.01.T01 AT5G10630 38.824 255 128 5 7 235 239 491 9.36e-56 197
MsG0180005251.01.T01 AT5G10630 38.824 255 128 5 7 235 240 492 9.49e-56 197
MsG0180005251.01.T01 AT5G10630 38.824 255 128 5 7 235 240 492 9.49e-56 197
MsG0180005251.01.T01 AT5G10630 38.824 255 128 5 7 235 310 562 2.32e-55 197
MsG0180005251.01.T01 AT5G10630 38.824 255 128 5 7 235 315 567 2.71e-55 197
MsG0180005251.01.T01 AT1G18070 32.468 385 189 8 5 321 99 480 1.46e-54 192
MsG0180005251.01.T01 AT4G02930 33.463 257 120 8 3 236 63 291 2.98e-31 126
MsG0180005251.01.T01 AT4G20360 32.046 259 129 5 3 236 75 311 1.66e-29 121
MsG0180005251.01.T01 AT4G20360 32.046 259 129 5 3 236 75 311 1.66e-29 121
MsG0180005251.01.T01 AT5G50840 38.418 177 85 6 322 494 1 157 3.48e-16 80.9
MsG0180005251.01.T01 AT5G50840 37.079 178 87 6 322 494 1 158 4.85e-15 77.4
MsG0180005251.01.T01 AT1G35550 74.359 39 9 1 282 320 1 38 3.17e-12 63.5

Find 155 sgRNAs with CRISPR-Local

Find 487 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGGAAGCTGGTTTGCTTC+TGG 0.243236 1:+89196535 None:intergenic
ATTGATTGTGGTCATTCTAA+TGG 0.258912 1:-89196400 MsG0180005251.01.T01:CDS
GTAAAGGATGCATGTGCTTC+AGG 0.259994 1:-89195163 MsG0180005251.01.T01:CDS
TTATGAAATTAGTTTCAATT+TGG 0.283560 1:-89201019 MsG0180005251.01.T01:intron
GCTCTCCTTGCTTTCACTCT+TGG 0.289982 1:-89199753 MsG0180005251.01.T01:CDS
CTGATGGGCTTCTCTTGTTC+AGG 0.299542 1:+89196445 None:intergenic
GAAGCACATGCATCCTTTAC+AGG 0.303336 1:+89195166 None:intergenic
GTCTACAAGATTGGAGGAAT+TGG 0.315206 1:-89199348 MsG0180005251.01.T01:CDS
GCCTCTTAGGCTCATTGATT+TGG 0.315866 1:+89199406 None:intergenic
TGTCAAGAATGTTGCTGTTA+AGG 0.325240 1:-89199175 MsG0180005251.01.T01:CDS
AAGTTAGCAGCCTCCTTGGC+TGG 0.333938 1:+89199111 None:intergenic
CACATCAACATTGTGGTCAT+TGG 0.354316 1:-89200143 MsG0180005251.01.T01:CDS
GAGGTGTGGCAGTCAAGAAC+AGG 0.357372 1:+89199030 None:intergenic
TCCTGAAGTTGATTCATTGC+CGG 0.363142 1:-89196518 MsG0180005251.01.T01:CDS
ATTCCATTTGTTCCCATCTC+TGG 0.368209 1:-89199507 MsG0180005251.01.T01:CDS
GGCTTCTCTTGTTCAGGAGT+TGG 0.369688 1:+89196451 None:intergenic
GCTCTCACAGAGGCCCTTCC+TGG 0.369900 1:-89199214 MsG0180005251.01.T01:intron
CTCCTTGGCTGGGTCATCCT+TGG 0.371873 1:+89199122 None:intergenic
ATATCTACCCTTGGAGTACT+TGG 0.380807 1:+89199589 None:intergenic
GTTGGAGTAGCAGGCGCAAC+AGG 0.381038 1:+89196469 None:intergenic
GGTTGCAGCTAAACAACCTT+TGG 0.383471 1:-89195203 MsG0180005251.01.T01:intron
TCACCATTGACATTGCTCTT+TGG 0.386025 1:-89199950 MsG0180005251.01.T01:CDS
GTCATTGGCCATGTCGACTC+TGG 0.395247 1:-89200128 MsG0180005251.01.T01:CDS
TCCGGCAATGAATCAACTTC+AGG 0.416327 1:+89196517 None:intergenic
CTCATCATTGATTCCACTAC+TGG 0.419293 1:-89199822 MsG0180005251.01.T01:CDS
CTTAATGAAATCCCTGTGTC+CGG 0.429384 1:+89199884 None:intergenic
GCCCCTCCGACTACCACTTC+AGG 0.433104 1:-89199373 MsG0180005251.01.T01:CDS
ACTAAGATTGATAGGCGTTC+CGG 0.433848 1:-89198976 MsG0180005251.01.T01:intron
TTGCCGGATGGGTTTGTTGA+GGG 0.434934 1:-89196502 MsG0180005251.01.T01:CDS
TGACAAGCTTAAGGCTGAAC+GGG 0.436450 1:-89199982 MsG0180005251.01.T01:CDS
AGAACTAATGGGTAAGGAAA+AGG 0.440646 1:-89200168 MsG0180005251.01.T01:exon
AGCGTTCATTCAAGTATGCC+TGG 0.444655 1:-89200010 MsG0180005251.01.T01:CDS
GGCTTGTCTGAAGGCCTCTT+AGG 0.446650 1:+89199393 None:intergenic
AAACCAGAGATGGGAACAAA+TGG 0.449170 1:+89199504 None:intergenic
CTTCAGGATGTCTACAAGAT+TGG 0.458119 1:-89199357 MsG0180005251.01.T01:CDS
AGTAGCAGGCGCAACAGGTT+CGG 0.461107 1:+89196474 None:intergenic
ACCAAATCAATGAGCCTAAG+AGG 0.463105 1:-89199407 MsG0180005251.01.T01:CDS
CTGGGTCCTTGACAAGCTTA+AGG 0.464518 1:-89199991 MsG0180005251.01.T01:CDS
ACTCAAGTATCAACAAGTAT+TGG 0.464833 1:-89194521 MsG0180005251.01.T01:CDS
TGGGTCATCCTTGGAGTTTG+AGG 0.465051 1:+89199131 None:intergenic
CACAAACCTTGACTGGTACA+AGG 0.466653 1:-89199454 MsG0180005251.01.T01:CDS
CATGGCCAGCCAGATGGAAA+TGG 0.467118 1:-89199060 MsG0180005251.01.T01:CDS
TAGGCTCATTGATTTGGTCA+AGG 0.472707 1:+89199412 None:intergenic
TTAATGAAATCCCTGTGTCC+GGG 0.473933 1:+89199885 None:intergenic
AGGCTCATTGATTTGGTCAA+GGG 0.475242 1:+89199413 None:intergenic
TGTAAAGTTAGCAGCCTCCT+TGG 0.477279 1:+89199107 None:intergenic
TTTACATCATTGCTTCTGGA+TGG 0.479292 1:+89196224 None:intergenic
AGCTTGTTACTAAGATTGAT+AGG 0.481965 1:-89198984 MsG0180005251.01.T01:CDS
ACAATCAGCTTGGGATGTTC+CGG 0.483792 1:+89199851 None:intergenic
CATAGCCATTTCCATCTGGC+TGG 0.487397 1:+89199055 None:intergenic
TGTTCAGGAGTTGGAGTAGC+AGG 0.487921 1:+89196460 None:intergenic
GCCTGTGGGGCGTGTTGAAA+AGG 0.491054 1:-89199319 MsG0180005251.01.T01:intron
CCTCTCAGACTGCTCGGTGG+AGG 0.491915 1:-89196291 MsG0180005251.01.T01:CDS
CTTGTACCAGTCAAGGTTTG+TGG 0.492698 1:+89199455 None:intergenic
ATGAATCAACTTCAGGAAGC+TGG 0.495951 1:+89196524 None:intergenic
ATCTCCCTCAAAACCAGAGA+TGG 0.496573 1:+89199494 None:intergenic
CATTTCCATCTGGCTGGCCA+TGG 0.500911 1:+89199061 None:intergenic
CTGACCATCCTTAGAAATAC+CGG 0.501461 1:+89199788 None:intergenic
ATCATTGATTCCACTACTGG+TGG 0.502099 1:-89199819 MsG0180005251.01.T01:CDS
ATCCTCCTTGTAATCACTGA+TGG 0.503982 1:+89196429 None:intergenic
GGGGCATAGCCATTTCCATC+TGG 0.504038 1:+89199051 None:intergenic
AATGACAGTGCAGTAGTACT+TGG 0.509426 1:+89199914 None:intergenic
TAATGGATTATCAAACGTGC+CGG 0.510915 1:-89196383 MsG0180005251.01.T01:CDS
TGAGAACGGCACAATCAGCT+TGG 0.516820 1:+89199841 None:intergenic
AATTACATTTATCTGAACTC+TGG 0.517076 1:+89196180 None:intergenic
AGGAATTGGAACTGTGCCTG+TGG 0.517140 1:-89199334 MsG0180005251.01.T01:CDS
CAGGATGTCTACAAGATTGG+AGG 0.523217 1:-89199354 MsG0180005251.01.T01:CDS
CTTAAGGCTGAACGGGAAAG+AGG 0.523952 1:-89199975 MsG0180005251.01.T01:CDS
GAGGATGGTTTCATTGATTG+TGG 0.524391 1:-89196412 MsG0180005251.01.T01:CDS
GACAAAAGCACTGCCTGTAA+AGG 0.524835 1:-89195179 MsG0180005251.01.T01:CDS
GCGTGCACTTAAATCAGAAA+AGG 0.525607 1:-89194560 MsG0180005251.01.T01:CDS
AGTCGGAGGGGCTTGTCTGA+AGG 0.529275 1:+89199384 None:intergenic
GAAGTTGATTCATTGCCGGA+TGG 0.529940 1:-89196514 MsG0180005251.01.T01:CDS
GAGAACGGCACAATCAGCTT+GGG 0.529995 1:+89199842 None:intergenic
CTCTCAGACTGCTCGGTGGA+GGG 0.530354 1:-89196290 MsG0180005251.01.T01:CDS
TAAAGGATGCATGTGCTTCA+GGG 0.531396 1:-89195162 MsG0180005251.01.T01:CDS
CTTCCAAAGAGCAATGTCAA+TGG 0.534369 1:+89199947 None:intergenic
GGAATTGGAACTGTGCCTGT+GGG 0.536194 1:-89199333 MsG0180005251.01.T01:CDS
GTGCCCTCAACAAACCCATC+CGG 0.536588 1:+89196499 None:intergenic
AGCAAACTTGACAGCAATGT+GGG 0.541075 1:+89199008 None:intergenic
GGCCCTTCCTGGTGACAATG+TGG 0.543403 1:-89199203 MsG0180005251.01.T01:CDS
TGCACTGTCATTGATGCCCC+CGG 0.544718 1:-89199903 MsG0180005251.01.T01:CDS
CACTTGATCTACAAGCTTGG+AGG 0.545798 1:-89200086 MsG0180005251.01.T01:CDS
ATTGCCGGATGGGTTTGTTG+AGG 0.550853 1:-89196503 MsG0180005251.01.T01:CDS
GGCTTCAAAACCACCAGTAG+TGG 0.551737 1:+89199809 None:intergenic
AAGTTGATTCATTGCCGGAT+GGG 0.555154 1:-89196513 MsG0180005251.01.T01:CDS
GGTCACTTGATCTACAAGCT+TGG 0.555547 1:-89200089 MsG0180005251.01.T01:CDS
GTATTGGCTGAAAGAGATGC+AGG 0.555798 1:-89194505 MsG0180005251.01.T01:CDS
TCAAGGGCCTCAAGAAGGGT+TGG 0.557590 1:+89199429 None:intergenic
GAAGCCCATCAGTGATTACA+AGG 0.557693 1:-89196434 MsG0180005251.01.T01:CDS
TTGGTCAAGGGCCTCAAGAA+GGG 0.558003 1:+89199425 None:intergenic
TTGGACCCTTGTACCAGTCA+AGG 0.558366 1:+89199448 None:intergenic
AAGCAAGGAGAGCATGTTCA+CGG 0.559179 1:+89199763 None:intergenic
TCATTGGCCATGTCGACTCT+GGG 0.559180 1:-89200127 MsG0180005251.01.T01:CDS
AGGTGTGGCAGTCAAGAACA+GGG 0.559985 1:+89199031 None:intergenic
TTTGGTCAAGGGCCTCAAGA+AGG 0.560467 1:+89199424 None:intergenic
AGCGCTCCACAAACCTTGAC+TGG 0.561686 1:-89199461 MsG0180005251.01.T01:CDS
TCCTCCTTGTAATCACTGAT+GGG 0.561879 1:+89196430 None:intergenic
AGTTAGCAGCCTCCTTGGCT+GGG 0.563218 1:+89199112 None:intergenic
GAAGCCGGTATTTCTAAGGA+TGG 0.564413 1:-89199792 MsG0180005251.01.T01:CDS
ATCAGTGATTACAAGGAGGA+TGG 0.564958 1:-89196427 MsG0180005251.01.T01:CDS
TCTGGGAAATCAACCACCAC+TGG 0.564990 1:-89200110 MsG0180005251.01.T01:CDS
ACAAACCTTGACTGGTACAA+GGG 0.567625 1:-89199453 MsG0180005251.01.T01:CDS
ACCCACATTGTCACCAGGAA+GGG 0.567992 1:+89199201 None:intergenic
TAATGAAATCCCTGTGTCCG+GGG 0.570266 1:+89199886 None:intergenic
TTCATTAAGAACATGATCAC+CGG 0.572337 1:-89199870 MsG0180005251.01.T01:CDS
AGCAAGGAGAGCATGTTCAC+GGG 0.572470 1:+89199764 None:intergenic
CTTAAGCTTGTCAAGGACCC+AGG 0.575518 1:+89199992 None:intergenic
ATCCTGAAGTGGTAGTCGGA+GGG 0.576252 1:+89199371 None:intergenic
TATCTACCCTTGGAGTACTT+GGG 0.580849 1:+89199590 None:intergenic
CATTAACCCACATTGTCACC+AGG 0.582862 1:+89199196 None:intergenic
GCTTCTGGATGGTTGAGACT+CGG 0.585832 1:+89196235 None:intergenic
AATGGATTATCAAACGTGCC+GGG 0.588211 1:-89196382 MsG0180005251.01.T01:intron
TTGATTTCCCAGAGTCGACA+TGG 0.588973 1:+89200120 None:intergenic
CTGTTAAGGATCTCAAGCGT+GGG 0.589274 1:-89199161 MsG0180005251.01.T01:CDS
AATCACCATGGCCAGCCAGA+TGG 0.593313 1:-89199066 MsG0180005251.01.T01:CDS
TTGACAAGCTTAAGGCTGAA+CGG 0.594016 1:-89199983 MsG0180005251.01.T01:CDS
TGGCTGAAAGAGATGCAGGT+TGG 0.597210 1:-89194501 MsG0180005251.01.T01:CDS
AACCCACATTGTCACCAGGA+AGG 0.597955 1:+89199200 None:intergenic
CTCCAAGGATGACCCAGCCA+AGG 0.602045 1:-89199124 MsG0180005251.01.T01:CDS
GCCCTTCCTGGTGACAATGT+GGG 0.605609 1:-89199202 MsG0180005251.01.T01:CDS
GCGTTCATTCAAGTATGCCT+GGG 0.605879 1:-89200009 MsG0180005251.01.T01:CDS
TCTCCCTCAAAACCAGAGAT+GGG 0.607478 1:+89199495 None:intergenic
TCCTGAAGTGGTAGTCGGAG+GGG 0.608492 1:+89199372 None:intergenic
AAAGAGCAACAACAAGGAGA+AGG 0.611330 1:-89196203 MsG0180005251.01.T01:CDS
TACTACACCCAAGTACTCCA+AGG 0.613862 1:-89199597 MsG0180005251.01.T01:CDS
GTTCAGCCTTAAGCTTGTCA+AGG 0.618150 1:+89199985 None:intergenic
CAAGGGTCCAACCCTTCTTG+AGG 0.620566 1:-89199436 MsG0180005251.01.T01:CDS
TCACACCAAGAGTGAAAGCA+AGG 0.621193 1:+89199748 None:intergenic
ATCTTGTAGACATCCTGAAG+TGG 0.621388 1:+89199360 None:intergenic
GCTGTTAAGGATCTCAAGCG+TGG 0.622485 1:-89199162 MsG0180005251.01.T01:CDS
TTGACAAGCGTGTCATCGAG+AGG 0.625348 1:-89200061 MsG0180005251.01.T01:CDS
GTATGTTGCCTCAAACTCCA+AGG 0.633897 1:-89199139 MsG0180005251.01.T01:CDS
CATCCTGAAGTGGTAGTCGG+AGG 0.637451 1:+89199370 None:intergenic
AGACATCCTGAAGTGGTAGT+CGG 0.638051 1:+89199367 None:intergenic
CAGCAAACTTGACAGCAATG+TGG 0.638328 1:+89199007 None:intergenic
GAATTGGAACTGTGCCTGTG+GGG 0.644316 1:-89199332 MsG0180005251.01.T01:CDS
AGTGGAATCAATGATGAGAA+CGG 0.644693 1:+89199827 None:intergenic
TGACAGCAATGTGGGAGGTG+TGG 0.650950 1:+89199016 None:intergenic
AATGATCTGCTGTTGCAACA+AGG 0.659392 1:-89199721 MsG0180005251.01.T01:intron
CAAGGATGACCCAGCCAAGG+AGG 0.659665 1:-89199121 MsG0180005251.01.T01:CDS
AATGAAATCCCTGTGTCCGG+GGG 0.661737 1:+89199887 None:intergenic
AAAGGTTCACATCAACATTG+TGG 0.675059 1:-89200150 MsG0180005251.01.T01:CDS
ACTACACCCAAGTACTCCAA+GGG 0.678033 1:-89199596 MsG0180005251.01.T01:intron
CCTCCACCGAGCAGTCTGAG+AGG 0.679017 1:+89196291 None:intergenic
GATGTAAAAGAGCAACAACA+AGG 0.680608 1:-89196209 MsG0180005251.01.T01:CDS
GGATGCATGTGCTTCAGGGA+TGG 0.680755 1:-89195158 MsG0180005251.01.T01:CDS
CTTGTAGATCAAGTGACCAG+TGG 0.682705 1:+89200094 None:intergenic
TCACCTCTCAGACTGCTCGG+TGG 0.683389 1:-89196294 MsG0180005251.01.T01:CDS
TCGGAAACAGAACTAGCTAG+AGG 0.687895 1:+89196254 None:intergenic
GTGATCATAATGAATCACCA+TGG 0.692509 1:-89199078 MsG0180005251.01.T01:CDS
AAACTTGACAGCAATGTGGG+AGG 0.695398 1:+89199011 None:intergenic
GTAGATCAAGTGACCAGTGG+TGG 0.699002 1:+89200097 None:intergenic
GGTGTGGCAGTCAAGAACAG+GGG 0.711459 1:+89199032 None:intergenic
GCCCATCAGTGATTACAAGG+AGG 0.736966 1:-89196431 MsG0180005251.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - Chr1:89200441-89200460 MsG0180005251.01.T01:intron 0.0%
!! ATATATATATATATATGGTT+CGG - Chr1:89200468-89200487 MsG0180005251.01.T01:intron 10.0%
!!! ATTTAATTTTTTTCTTTCTT+TGG - Chr1:89195256-89195275 MsG0180005251.01.T01:intron 10.0%
!!! TTTAATTTTTTTCTTTCTTT+GGG - Chr1:89195257-89195276 MsG0180005251.01.T01:intron 10.0%
!!! TTTATTTTATTTTTAAAGTG+AGG - Chr1:89198855-89198874 MsG0180005251.01.T01:intron 10.0%
!!! TTTTCATTTTTTTTTTACTT+TGG - Chr1:89195008-89195027 MsG0180005251.01.T01:intron 10.0%
!! AAAAAAAGAAAAAAAGAAGA+GGG + Chr1:89198351-89198370 None:intergenic 15.0%
!! AAACTTCAGTAAAATAAAAT+AGG + Chr1:89194783-89194802 None:intergenic 15.0%
!! AAGAAGGAAAAAAAAAAAAA+AGG + Chr1:89194948-89194967 None:intergenic 15.0%
!! AGAAGGAAAAAAAAAAAAAA+GGG + Chr1:89194947-89194966 None:intergenic 15.0%
!! ATAATCTACTTAATAAAGAA+CGG + Chr1:89199521-89199540 None:intergenic 15.0%
!! ATCATAGTTATTACAATAAA+TGG - Chr1:89196813-89196832 MsG0180005251.01.T01:intron 15.0%
!! CAATATTAACAAAATTCAAT+TGG + Chr1:89197455-89197474 None:intergenic 15.0%
!! TAATAATAAAAAAAGACTCA+GGG - Chr1:89200640-89200659 MsG0180005251.01.T01:intron 15.0%
!! TATCTTGAATTCATTTATTA+TGG - Chr1:89195850-89195869 MsG0180005251.01.T01:intron 15.0%
!! TGTAAATTTAGATAAAAGAT+CGG + Chr1:89197184-89197203 None:intergenic 15.0%
!! TTAATAATAAAAAAAGACTC+AGG - Chr1:89200639-89200658 MsG0180005251.01.T01:intron 15.0%
!!! AATCCTTTATGTTTTTAAAT+AGG - Chr1:89194578-89194597 MsG0180005251.01.T01:CDS 15.0%
!!! CGTTTTTATTTTATTTGTTT+TGG - Chr1:89198114-89198133 MsG0180005251.01.T01:intron 15.0%
!!! TTAATTTTTTTCTTTCTTTG+GGG - Chr1:89195258-89195277 MsG0180005251.01.T01:intron 15.0%
!!! TTTTTTTTGTAAGAATTTCT+TGG - Chr1:89197604-89197623 MsG0180005251.01.T01:intron 15.0%
!!! TTTTTTTTGTGTTTATTTCT+TGG - Chr1:89197070-89197089 MsG0180005251.01.T01:intron 15.0%
!! AATAATAAAAAAAGACTCAG+GGG - Chr1:89200641-89200660 MsG0180005251.01.T01:intron 20.0%
!! AATGCAAGAGATTAATTAAT+TGG + Chr1:89198513-89198532 None:intergenic 20.0%
!! ACATTTGAAAAAAATAGAGA+AGG + Chr1:89200097-89200116 None:intergenic 20.0%
!! ACTATAAACAAAAAGTTTCA+TGG + Chr1:89199745-89199764 None:intergenic 20.0%
!! ATCTTATATGATTGAACAAT+TGG - Chr1:89199992-89200011 MsG0180005251.01.T01:CDS 20.0%
!! ATTCAGAATTACAATTAAAC+AGG + Chr1:89194544-89194563 None:intergenic 20.0%
!! CATTTGAAAAAAATAGAGAA+GGG + Chr1:89200096-89200115 None:intergenic 20.0%
!! GAAAAAAAGAAAAAAAGAAG+AGG + Chr1:89198352-89198371 None:intergenic 20.0%
!! GCATAAATTAATATAACTGA+CGG - Chr1:89200193-89200212 MsG0180005251.01.T01:intron 20.0%
!! TGTTAAAAACATGAATTCTA+AGG + Chr1:89198182-89198201 None:intergenic 20.0%
!! TTATGTTTACATTGAGAAAA+GGG + Chr1:89197917-89197936 None:intergenic 20.0%
!! TTGATACCAACAATTAAAAA+TGG + Chr1:89198466-89198485 None:intergenic 20.0%
!! TTTATGTTTACATTGAGAAA+AGG + Chr1:89197918-89197937 None:intergenic 20.0%
!! TTTCCATATTGTATTGAATT+AGG - Chr1:89199780-89199799 MsG0180005251.01.T01:CDS 20.0%
!!! ATAAGAGATTTTTGAAATGT+AGG - Chr1:89198932-89198951 MsG0180005251.01.T01:intron 20.0%
!!! CATGTTTTTAACATACATAA+GGG - Chr1:89198189-89198208 MsG0180005251.01.T01:intron 20.0%
!!! CATTTTTATTTTGTGTGTTT+AGG - Chr1:89198529-89198548 MsG0180005251.01.T01:intron 20.0%
!!! CTTAAAAGCAAGTTTTAATT+TGG - Chr1:89199423-89199442 MsG0180005251.01.T01:CDS 20.0%
!!! TCATGTTTTTAACATACATA+AGG - Chr1:89198188-89198207 MsG0180005251.01.T01:intron 20.0%
!!! TCTAAGATTGTAAATTTTAC+AGG + Chr1:89197877-89197896 None:intergenic 20.0%
!!! TGAAATTTTGAGATTTTGTT+AGG + Chr1:89197774-89197793 None:intergenic 20.0%
!!! TTTCTTCCATTTTTAATTGT+TGG - Chr1:89198457-89198476 MsG0180005251.01.T01:intron 20.0%
!!! TTTTAAAGTGAGGATTAAAT+TGG - Chr1:89198865-89198884 MsG0180005251.01.T01:intron 20.0%
! AAAGATGCTTTACTGAAATT+AGG + Chr1:89197853-89197872 None:intergenic 25.0%
! AAATAAAATGCGATAGTTGA+TGG + Chr1:89200578-89200597 None:intergenic 25.0%
! AAATAGCATGAGTATGAAAT+GGG + Chr1:89199645-89199664 None:intergenic 25.0%
! AAATTTACAGCAGTTATCTT+TGG - Chr1:89197224-89197243 MsG0180005251.01.T01:intron 25.0%
! AACTACTATCAATTTCATCA+AGG + Chr1:89198688-89198707 None:intergenic 25.0%
! AAGATAACTGCTGTAAATTT+AGG + Chr1:89197224-89197243 None:intergenic 25.0%
! AATAAAATGCGATAGTTGAT+GGG + Chr1:89200577-89200596 None:intergenic 25.0%
! AATATGGAAATGTTTGAACT+AGG + Chr1:89199770-89199789 None:intergenic 25.0%
! AATTACATTTATCTGAACTC+TGG + Chr1:89199326-89199345 None:intergenic 25.0%
! ACAAAATAGTCATCAAATAG+AGG + Chr1:89200543-89200562 None:intergenic 25.0%
! ACAAAATGTTATCCCATAAA+TGG + Chr1:89195145-89195164 None:intergenic 25.0%
! ACTACTATCAATTTCATCAA+GGG + Chr1:89198687-89198706 None:intergenic 25.0%
! AGACGAAAATAGAAATACTA+AGG + Chr1:89196846-89196865 None:intergenic 25.0%
! AGATAACTGCTGTAAATTTA+GGG + Chr1:89197223-89197242 None:intergenic 25.0%
! AGTTAGTAGTTATTTGTTTC+TGG - Chr1:89194705-89194724 MsG0180005251.01.T01:intron 25.0%
! ATAACAACAAATTACAGCTA+CGG + Chr1:89198600-89198619 None:intergenic 25.0%
! ATAATAAAAAAAGACTCAGG+GGG - Chr1:89200642-89200661 MsG0180005251.01.T01:intron 25.0%
! ATATACATAGTTAGACAAGA+TGG + Chr1:89199851-89199870 None:intergenic 25.0%
! ATGCCTAATTCAATACAATA+TGG + Chr1:89199786-89199805 None:intergenic 25.0%
! ATTATACCTAGGTAATCAAA+GGG - Chr1:89197284-89197303 MsG0180005251.01.T01:intron 25.0%
! CAAAATGTTATCCCATAAAT+GGG + Chr1:89195144-89195163 None:intergenic 25.0%
! CATAGAAAGATCAATTTGTA+AGG + Chr1:89197569-89197588 None:intergenic 25.0%
! CCACCTATTTAAAAACATAA+AGG + Chr1:89194584-89194603 None:intergenic 25.0%
! GAAAGAAGAAAAGTTTACAT+TGG + Chr1:89199569-89199588 None:intergenic 25.0%
! GACAAAAAAAAAATTGTGAC+TGG - Chr1:89198814-89198833 MsG0180005251.01.T01:intron 25.0%
! GTTATTACAATAAATGGTCT+TGG - Chr1:89196819-89196838 MsG0180005251.01.T01:intron 25.0%
! TAAAATAAAAACGCAATGTG+TGG + Chr1:89198107-89198126 None:intergenic 25.0%
! TAAATACGAAGTCTACAAAA+GGG + Chr1:89199366-89199385 None:intergenic 25.0%
! TAAATAGCATGAGTATGAAA+TGG + Chr1:89199646-89199665 None:intergenic 25.0%
! TAGATATGATGAAATTGTGA+AGG - Chr1:89195930-89195949 MsG0180005251.01.T01:intron 25.0%
! TATATTTCGAAAATGCAACT+AGG - Chr1:89197647-89197666 MsG0180005251.01.T01:intron 25.0%
! TATCTAAATTTACAATTGCC+AGG - Chr1:89197190-89197209 MsG0180005251.01.T01:intron 25.0%
! TATCTCTTTAGTATCTGATA+AGG - Chr1:89200255-89200274 MsG0180005251.01.T01:intron 25.0%
! TATTATACCTAGGTAATCAA+AGG - Chr1:89197283-89197302 MsG0180005251.01.T01:intron 25.0%
! TCTGATCTTATCTATTAATC+AGG + Chr1:89194845-89194864 None:intergenic 25.0%
! TGACAAAATAAAGATTCAGA+GGG - Chr1:89200715-89200734 MsG0180005251.01.T01:intron 25.0%
! TGTTTGCAGTAAATTCAATT+AGG + Chr1:89197728-89197747 None:intergenic 25.0%
! TTGACAAAATAAAGATTCAG+AGG - Chr1:89200714-89200733 MsG0180005251.01.T01:intron 25.0%
!! AAGCATTGTACGAATATATA+TGG + Chr1:89197987-89198006 None:intergenic 25.0%
!! AGTTGCATTTTCGAAATATA+GGG + Chr1:89197647-89197666 None:intergenic 25.0%
!! ATTTTCGAAATATAGGGAAA+AGG + Chr1:89197641-89197660 None:intergenic 25.0%
!! GATGAAATTGATAGTAGTTT+AGG - Chr1:89198689-89198708 MsG0180005251.01.T01:intron 25.0%
!! GCAAAAAAACAACTTTTTAG+GGG - Chr1:89197504-89197523 MsG0180005251.01.T01:intron 25.0%
!! GGCAAAAAAACAACTTTTTA+GGG - Chr1:89197503-89197522 MsG0180005251.01.T01:intron 25.0%
!! TAAAAACATGAATTCTAAGG+AGG + Chr1:89198179-89198198 None:intergenic 25.0%
!! TAAAGGATTATCACACTTTT+TGG + Chr1:89194567-89194586 None:intergenic 25.0%
!! TAGTTGCATTTTCGAAATAT+AGG + Chr1:89197648-89197667 None:intergenic 25.0%
!! TTTTGTTAGGCATGATTATT+TGG + Chr1:89197761-89197780 None:intergenic 25.0%
!!! AACTTTAAAGCAAAAAGTCT+CGG - Chr1:89197482-89197501 MsG0180005251.01.T01:intron 25.0%
!!! CCTTTATGTTTTTAAATAGG+TGG - Chr1:89194581-89194600 MsG0180005251.01.T01:CDS 25.0%
!!! CTCTATTTTTTTCAAATGTG+TGG - Chr1:89200098-89200117 MsG0180005251.01.T01:CDS 25.0%
!!! TAAATTGGAGTTTTTTCTGA+AGG - Chr1:89198880-89198899 MsG0180005251.01.T01:intron 25.0%
!!! TAGCTGTAATTTGTTGTTAT+TGG - Chr1:89198600-89198619 MsG0180005251.01.T01:intron 25.0%
!!! TTCAGCTTTTAAGAACTAAT+GGG - Chr1:89195324-89195343 MsG0180005251.01.T01:intron 25.0%
!!! TTGTGAAGGTTTTAACTTTT+TGG - Chr1:89194614-89194633 MsG0180005251.01.T01:intron 25.0%
!!! TTTCAGCTTTTAAGAACTAA+TGG - Chr1:89195323-89195342 MsG0180005251.01.T01:intron 25.0%
!!! TTTTTTGTCAAATAACCTAG+TGG + Chr1:89198803-89198822 None:intergenic 25.0%
AAAAAAAAAAAGGGACTCCA+CGG + Chr1:89194938-89194957 None:intergenic 30.0%
AAAAAGAAGAGGGATAATCA+TGG + Chr1:89198341-89198360 None:intergenic 30.0%
AAAAGAAGAGGGATAATCAT+GGG + Chr1:89198340-89198359 None:intergenic 30.0%
AAATAAAGATTCAGAGGGTT+AGG - Chr1:89200720-89200739 MsG0180005251.01.T01:intron 30.0%
AAATACGAAGTCTACAAAAG+GGG + Chr1:89199365-89199384 None:intergenic 30.0%
AAGTTTCATCCTATTGAAGA+AGG - Chr1:89195953-89195972 MsG0180005251.01.T01:intron 30.0%
AATCACCTTAGATGCAAAAT+AGG - Chr1:89197415-89197434 MsG0180005251.01.T01:intron 30.0%
AATTTCATCATATCTACCCT+TGG + Chr1:89195926-89195945 None:intergenic 30.0%
AATTTGAGGGTCATAACAAA+AGG + Chr1:89199810-89199829 None:intergenic 30.0%
ACAAAATAATGACTCGTAGA+GGG - Chr1:89200750-89200769 MsG0180005251.01.T01:intron 30.0%
ACTCAAGTATCAACAAGTAT+TGG - Chr1:89200982-89201001 MsG0180005251.01.T01:intron 30.0%
ACTGAAATTAGGTGAAGTTA+GGG + Chr1:89197842-89197861 None:intergenic 30.0%
ATCACCATTCTTCAAGATTT+GGG + Chr1:89196572-89196591 None:intergenic 30.0%
ATCACCTTAGATGCAAAATA+GGG - Chr1:89197416-89197435 MsG0180005251.01.T01:intron 30.0%
ATGAAATATGATGTTTCAGC+AGG + Chr1:89194733-89194752 None:intergenic 30.0%
ATTGATTGTGGTCATTCTAA+TGG - Chr1:89199103-89199122 MsG0180005251.01.T01:CDS 30.0%
ATTTGAGGGTCATAACAAAA+GGG + Chr1:89199809-89199828 None:intergenic 30.0%
CAATAACATCTCTCTACAAT+GGG + Chr1:89198577-89198596 None:intergenic 30.0%
CATGAGTAGGAAAATGAATA+AGG + Chr1:89199591-89199610 None:intergenic 30.0%
CTAAATACGAAGTCTACAAA+AGG + Chr1:89199367-89199386 None:intergenic 30.0%
CTGTTAACAGTCATAATTGA+CGG - Chr1:89200128-89200147 MsG0180005251.01.T01:CDS 30.0%
GATAACTGCTGTAAATTTAG+GGG + Chr1:89197222-89197241 None:intergenic 30.0%
GGAAGGTTGTAAAAGTAAAA+TGG - Chr1:89200037-89200056 MsG0180005251.01.T01:CDS 30.0%
GGTTTGAAGAACAAATTTGT+TGG - Chr1:89199930-89199949 MsG0180005251.01.T01:CDS 30.0%
TAAATTTACAATTGCCAGGT+AGG - Chr1:89197194-89197213 MsG0180005251.01.T01:intron 30.0%
TACTGAAATTAGGTGAAGTT+AGG + Chr1:89197843-89197862 None:intergenic 30.0%
TAGTTCACATAGAAGAAACA+AGG - Chr1:89198241-89198260 MsG0180005251.01.T01:intron 30.0%
TATGATTGAACAATTGGAGA+CGG - Chr1:89199998-89200017 MsG0180005251.01.T01:CDS 30.0%
TATTGAGTAGGGAATTCATT+CGG - Chr1:89200677-89200696 MsG0180005251.01.T01:intron 30.0%
TCTGAAGGAAAGGATTAAAT+TGG - Chr1:89198895-89198914 MsG0180005251.01.T01:intron 30.0%
TCTGTTACCATTGTTAATTG+TGG - Chr1:89200279-89200298 MsG0180005251.01.T01:intron 30.0%
TGATTAGGTTCTATTGAGTA+GGG - Chr1:89200666-89200685 MsG0180005251.01.T01:intron 30.0%
TGTCTTGATCATTTGCTTAT+GGG - Chr1:89199466-89199485 MsG0180005251.01.T01:CDS 30.0%
TTCATTAAGAACATGATCAC+CGG - Chr1:89195633-89195652 MsG0180005251.01.T01:intron 30.0%
TTGATTAGGTTCTATTGAGT+AGG - Chr1:89200665-89200684 MsG0180005251.01.T01:intron 30.0%
TTGTCTTGATCATTTGCTTA+TGG - Chr1:89199465-89199484 MsG0180005251.01.T01:CDS 30.0%
! CGGCAAAAAAACAACTTTTT+AGG - Chr1:89197502-89197521 MsG0180005251.01.T01:intron 30.0%
! CTTATTCATTTTCCTACTCA+TGG - Chr1:89199589-89199608 MsG0180005251.01.T01:intron 30.0%
! GAACAAATGGAATTTTGTCT+GGG + Chr1:89195989-89196008 None:intergenic 30.0%
! GTCAAACTTCTAATTTTCTC+AGG - Chr1:89200892-89200911 MsG0180005251.01.T01:five_prime_UTR 30.0%
! TCTAATTTTCTCAGGAAACT+GGG - Chr1:89200900-89200919 MsG0180005251.01.T01:five_prime_UTR 30.0%
! TGCTCATGTATTATTTTCCT+TGG - Chr1:89195284-89195303 MsG0180005251.01.T01:intron 30.0%
! TTCCTACTCATGGAATTTTT+AGG - Chr1:89199599-89199618 MsG0180005251.01.T01:CDS 30.0%
! TTCTAATTTTCTCAGGAAAC+TGG - Chr1:89200899-89200918 MsG0180005251.01.T01:five_prime_UTR 30.0%
!! AATATAACTGACGGATTCTT+TGG - Chr1:89200202-89200221 MsG0180005251.01.T01:intron 30.0%
!! AGACTGAATCATAGTTTGTT+AGG + Chr1:89198046-89198065 None:intergenic 30.0%
!! AGCTTGTTACTAAGATTGAT+AGG - Chr1:89196519-89196538 MsG0180005251.01.T01:CDS 30.0%
!! CTTTTAAGAACTAATGGGTA+AGG - Chr1:89195329-89195348 MsG0180005251.01.T01:intron 30.0%
!! GAAGAACAAATTTGTTGGAA+AGG - Chr1:89199935-89199954 MsG0180005251.01.T01:CDS 30.0%
!! GTGGTTCTAATATTATACCT+AGG - Chr1:89197273-89197292 MsG0180005251.01.T01:intron 30.0%
!! TATTGGTTTAGGCAATAATC+AGG - Chr1:89197127-89197146 MsG0180005251.01.T01:intron 30.0%
!!! AGTTTTTTTCCCCTTTCTTT+TGG - Chr1:89200832-89200851 MsG0180005251.01.T01:intron 30.0%
!!! TCTTTTTTGCATTTCTCTGT+TGG - Chr1:89200801-89200820 MsG0180005251.01.T01:intron 30.0%
AAAATTTCAAGCTCACCAGT+GGG - Chr1:89197785-89197804 MsG0180005251.01.T01:intron 35.0%
AAAGGTTCACATCAACATTG+TGG - Chr1:89195353-89195372 MsG0180005251.01.T01:intron 35.0%
AACAACAACAATATGTCAGC+AGG + Chr1:89194758-89194777 None:intergenic 35.0%
AACACACATGCTTCAAAAGA+AGG + Chr1:89194964-89194983 None:intergenic 35.0%
AACTAATATCGACACCCATT+TGG + Chr1:89197541-89197560 None:intergenic 35.0%
AAGATCCAATAGTGTGAATG+CGG + Chr1:89198286-89198305 None:intergenic 35.0%
AAGATGGATAATTCAGAGAG+AGG + Chr1:89199835-89199854 None:intergenic 35.0%
ACAACAACAATATGTCAGCA+GGG + Chr1:89194757-89194776 None:intergenic 35.0%
ACAACACTCTATTGTAGAGT+CGG + Chr1:89199449-89199468 None:intergenic 35.0%
AGATGGATAATTCAGAGAGA+GGG + Chr1:89199834-89199853 None:intergenic 35.0%
AGGCATGATTATTTGGTATG+AGG + Chr1:89197754-89197773 None:intergenic 35.0%
AGTGGAATCAATGATGAGAA+CGG + Chr1:89195679-89195698 None:intergenic 35.0%
ATAACTATGATATGCTTCCC+AGG + Chr1:89196804-89196823 None:intergenic 35.0%
ATAATCATGGGAATACCTAG+CGG + Chr1:89198328-89198347 None:intergenic 35.0%
ATCCATCTGTTCAAGATAGA+TGG + Chr1:89195884-89195903 None:intergenic 35.0%
ATTGTTGCCAAACCCATTTA+TGG - Chr1:89195129-89195148 MsG0180005251.01.T01:intron 35.0%
CAAATAGAGGCAAAGTTACT+CGG + Chr1:89200530-89200549 None:intergenic 35.0%
CACCTAAAAATTCCATGAGT+AGG + Chr1:89199604-89199623 None:intergenic 35.0%
CATCACCATTCTTCAAGATT+TGG + Chr1:89196573-89196592 None:intergenic 35.0%
GAACAAAAGCTAAGAGATGA+AGG + Chr1:89196905-89196924 None:intergenic 35.0%
GACAAAATAATGACTCGTAG+AGG - Chr1:89200749-89200768 MsG0180005251.01.T01:intron 35.0%
GATGTAAAAGAGCAACAACA+AGG - Chr1:89199294-89199313 MsG0180005251.01.T01:intron 35.0%
GATTCTTCAGCAGATATAAC+AGG + Chr1:89194812-89194831 None:intergenic 35.0%
GCAATAACATCTCTCTACAA+TGG + Chr1:89198578-89198597 None:intergenic 35.0%
GGGACTTTCTTATTCCAAAT+GGG - Chr1:89197524-89197543 MsG0180005251.01.T01:intron 35.0%
GTATATGAACGCTAAGCTAA+AGG + Chr1:89199971-89199990 None:intergenic 35.0%
GTATGACATGCCAAAAGAAA+GGG + Chr1:89200845-89200864 None:intergenic 35.0%
GTCTTGATCATTTGCTTATG+GGG - Chr1:89199467-89199486 MsG0180005251.01.T01:CDS 35.0%
GTGATCATAATGAATCACCA+TGG - Chr1:89196425-89196444 MsG0180005251.01.T01:CDS 35.0%
GTTTACATTGGTACAACACA+TGG + Chr1:89199557-89199576 None:intergenic 35.0%
TATAGCCAACCTTCTTCAAT+AGG + Chr1:89195965-89195984 None:intergenic 35.0%
TATGACATGCCAAAAGAAAG+GGG + Chr1:89200844-89200863 None:intergenic 35.0%
TCAGAGCGGAAAAGATTTAT+AGG + Chr1:89199892-89199911 None:intergenic 35.0%
TCTTGATCATTTGCTTATGG+GGG - Chr1:89199468-89199487 MsG0180005251.01.T01:CDS 35.0%
TGAAGCTAATTGAATGTGCA+TGG - Chr1:89199909-89199928 MsG0180005251.01.T01:CDS 35.0%
TGTATGACATGCCAAAAGAA+AGG + Chr1:89200846-89200865 None:intergenic 35.0%
TGTGATGTTTAAGCTTTGCT+GGG - Chr1:89197093-89197112 MsG0180005251.01.T01:intron 35.0%
TTCATCCTATTGAAGAAGGT+TGG - Chr1:89195957-89195976 MsG0180005251.01.T01:intron 35.0%
TTGTTGCCAAACCCATTTAT+GGG - Chr1:89195130-89195149 MsG0180005251.01.T01:intron 35.0%
TTTACATCATTGCTTCTGGA+TGG + Chr1:89199282-89199301 None:intergenic 35.0%
! ACATTCAATTAGCTTCAGAG+CGG + Chr1:89199906-89199925 None:intergenic 35.0%
! AGAACTAATGGGTAAGGAAA+AGG - Chr1:89195335-89195354 MsG0180005251.01.T01:intron 35.0%
! CATCAGTCTTGTAAAACTGA+AGG - Chr1:89195068-89195087 MsG0180005251.01.T01:intron 35.0%
! CTAATTTTCTCAGGAAACTG+GGG - Chr1:89200901-89200920 MsG0180005251.01.T01:five_prime_UTR 35.0%
! CTCTTTTACATCATTGCTTC+TGG + Chr1:89199286-89199305 None:intergenic 35.0%
! GGAACAAATGGAATTTTGTC+TGG + Chr1:89195990-89196009 None:intergenic 35.0%
! TAGCTTTTGTTCTCAGAACT+GGG - Chr1:89196913-89196932 MsG0180005251.01.T01:intron 35.0%
! TCATCCCTATTTTGCATCTA+AGG + Chr1:89197423-89197442 None:intergenic 35.0%
! TGTCAAGAATGTTGCTGTTA+AGG - Chr1:89196328-89196347 MsG0180005251.01.T01:intron 35.0%
! TGTTATCCCATAAATGGGTT+TGG + Chr1:89195139-89195158 None:intergenic 35.0%
! TTCTTTTGGCATGTCATACA+TGG - Chr1:89200846-89200865 MsG0180005251.01.T01:intron 35.0%
!! GCATATGGTTCTATTGGTTT+AGG - Chr1:89197116-89197135 MsG0180005251.01.T01:intron 35.0%
!! GTGGTTTTACTTTGTTGTGA+AGG - Chr1:89194600-89194619 MsG0180005251.01.T01:intron 35.0%
!! TAATGGATTATCAAACGTGC+CGG - Chr1:89199120-89199139 MsG0180005251.01.T01:CDS 35.0%
!! TGAAAAGGTGTCATAAAACC+TGG - Chr1:89196199-89196218 MsG0180005251.01.T01:CDS 35.0%
!! TTAGCTTTTGTTCTCAGAAC+TGG - Chr1:89196912-89196931 MsG0180005251.01.T01:intron 35.0%
!! TTTACTTTTACAACCTTCCC+CGG + Chr1:89200036-89200055 None:intergenic 35.0%
!! TTTCTTTTGATTCTTCCGCT+AGG - Chr1:89198310-89198329 MsG0180005251.01.T01:intron 35.0%
!!! TGGAGTTTTTTCTGAAGGAA+AGG - Chr1:89198885-89198904 MsG0180005251.01.T01:intron 35.0%
!!! TTTTGAAGCCGGTATTTCTA+AGG - Chr1:89195707-89195726 MsG0180005251.01.T01:intron 35.0%
AAACCAGAGATGGGAACAAA+TGG + Chr1:89196002-89196021 None:intergenic 40.0%
AAAGAGCAACAACAAGGAGA+AGG - Chr1:89199300-89199319 MsG0180005251.01.T01:intron 40.0%
AACCACAAAAAGATCTGCCA+AGG + Chr1:89195304-89195323 None:intergenic 40.0%
AATCAAAGGGACAGGACATT+AGG - Chr1:89197297-89197316 MsG0180005251.01.T01:intron 40.0%
AATGACAGTGCAGTAGTACT+TGG + Chr1:89195592-89195611 None:intergenic 40.0%
AATGATCTGCTGTTGCAACA+AGG - Chr1:89195782-89195801 MsG0180005251.01.T01:intron 40.0%
ACAAACCTTGACTGGTACAA+GGG - Chr1:89196050-89196069 MsG0180005251.01.T01:intron 40.0%
ACCAAATCAATGAGCCTAAG+AGG - Chr1:89196096-89196115 MsG0180005251.01.T01:intron 40.0%
ACGTGCAACAATTTGTGATC+TGG + Chr1:89198411-89198430 None:intergenic 40.0%
ACTAAGATTGATAGGCGTTC+CGG - Chr1:89196527-89196546 MsG0180005251.01.T01:CDS 40.0%
AGCAAACTTGACAGCAATGT+GGG + Chr1:89196498-89196517 None:intergenic 40.0%
AGTAGGGAATTCATTCGGAA+GGG - Chr1:89200682-89200701 MsG0180005251.01.T01:intron 40.0%
ATCAGTGATTACAAGGAGGA+TGG - Chr1:89199076-89199095 MsG0180005251.01.T01:CDS 40.0%
ATCCTCCTTGTAATCACTGA+TGG + Chr1:89199077-89199096 None:intergenic 40.0%
ATCTTGTAGACATCCTGAAG+TGG + Chr1:89196146-89196165 None:intergenic 40.0%
ATGAATCAACTTCAGGAAGC+TGG + Chr1:89198982-89199001 None:intergenic 40.0%
ATGTGTGCATGTCTACTTTC+TGG - Chr1:89199705-89199724 MsG0180005251.01.T01:intron 40.0%
ATTCCATTTGTTCCCATCTC+TGG - Chr1:89195996-89196015 MsG0180005251.01.T01:intron 40.0%
CAAAATTTCAAGCTCACCAG+TGG - Chr1:89197784-89197803 MsG0180005251.01.T01:intron 40.0%
CAACAACAATATGTCAGCAG+GGG + Chr1:89194756-89194775 None:intergenic 40.0%
CAATGCATGCAGAGATATAC+AGG + Chr1:89200417-89200436 None:intergenic 40.0%
CACATCAACATTGTGGTCAT+TGG - Chr1:89195360-89195379 MsG0180005251.01.T01:intron 40.0%
CACGTACGCTAAAATGTCAT+TGG + Chr1:89197256-89197275 None:intergenic 40.0%
CGTGCAACAATTTGTGATCT+GGG + Chr1:89198410-89198429 None:intergenic 40.0%
CTATTTGCACTGCACTCTTT+CGG - Chr1:89198434-89198453 MsG0180005251.01.T01:intron 40.0%
CTCCTTCTCAATTTCCTTAC+CGG + Chr1:89196549-89196568 None:intergenic 40.0%
CTGACCATCCTTAGAAATAC+CGG + Chr1:89195718-89195737 None:intergenic 40.0%
CTGTATATCTCTGCATGCAT+TGG - Chr1:89200415-89200434 MsG0180005251.01.T01:intron 40.0%
CTTAATGAAATCCCTGTGTC+CGG + Chr1:89195622-89195641 None:intergenic 40.0%
CTTCAGGATGTCTACAAGAT+TGG - Chr1:89196146-89196165 MsG0180005251.01.T01:intron 40.0%
CTTCCAAAGAGCAATGTCAA+TGG + Chr1:89195559-89195578 None:intergenic 40.0%
CTTTGCTTACAACAGCAAGA+AGG - Chr1:89198732-89198751 MsG0180005251.01.T01:intron 40.0%
GCGTGCACTTAAATCAGAAA+AGG - Chr1:89200943-89200962 MsG0180005251.01.T01:intron 40.0%
GCTGCAACCACAATTAACAA+TGG + Chr1:89200289-89200308 None:intergenic 40.0%
GGGGACTTTCTTATTCCAAA+TGG - Chr1:89197523-89197542 MsG0180005251.01.T01:intron 40.0%
GTCTACAAGATTGGAGGAAT+TGG - Chr1:89196155-89196174 MsG0180005251.01.T01:intron 40.0%
GTGATGTTTAAGCTTTGCTG+GGG - Chr1:89197094-89197113 MsG0180005251.01.T01:intron 40.0%
GTGTGATGTTTAAGCTTTGC+TGG - Chr1:89197092-89197111 MsG0180005251.01.T01:intron 40.0%
GTTCACTAATTTCGCTTACC+CGG + Chr1:89199142-89199161 None:intergenic 40.0%
GTTGTGTCTAGTCAGAAACT+TGG - Chr1:89196988-89197007 MsG0180005251.01.T01:intron 40.0%
TAAAGGATGCATGTGCTTCA+GGG - Chr1:89200341-89200360 MsG0180005251.01.T01:intron 40.0%
TACTACCGCATTCACACTAT+TGG - Chr1:89198278-89198297 MsG0180005251.01.T01:intron 40.0%
TACTCTACCACCGAGTTAAA+GGG + Chr1:89194912-89194931 None:intergenic 40.0%
TCACCATTGACATTGCTCTT+TGG - Chr1:89195553-89195572 MsG0180005251.01.T01:intron 40.0%
TCAGAGAGAGGGTAATTTGA+GGG + Chr1:89199823-89199842 None:intergenic 40.0%
TCCTCCTTGTAATCACTGAT+GGG + Chr1:89199076-89199095 None:intergenic 40.0%
TGCCATCTATCTTGAACAGA+TGG - Chr1:89195879-89195898 MsG0180005251.01.T01:intron 40.0%
TTAATGAAATCCCTGTGTCC+GGG + Chr1:89195621-89195640 None:intergenic 40.0%
TTACTCTACCACCGAGTTAA+AGG + Chr1:89194913-89194932 None:intergenic 40.0%
TTCAGAGAGAGGGTAATTTG+AGG + Chr1:89199824-89199843 None:intergenic 40.0%
TTCCGGTAAGGAAATTGAGA+AGG - Chr1:89196544-89196563 MsG0180005251.01.T01:CDS 40.0%
TTCTCTGAATATCCTCCACT+CGG - Chr1:89196640-89196659 MsG0180005251.01.T01:intron 40.0%
TTGACAAGCTTAAGGCTGAA+CGG - Chr1:89195520-89195539 MsG0180005251.01.T01:intron 40.0%
TTTGTTCTCTGCCTTTCTCT+CGG - Chr1:89200499-89200518 MsG0180005251.01.T01:intron 40.0%
! AAGTTGATTCATTGCCGGAT+GGG - Chr1:89198990-89199009 MsG0180005251.01.T01:CDS 40.0%
! AGGTGTCATAAAACCTGGAA+TGG - Chr1:89196204-89196223 MsG0180005251.01.T01:CDS 40.0%
! ATATCTACCCTTGGAGTACT+TGG + Chr1:89195917-89195936 None:intergenic 40.0%
! ATCTTGAAGAATGGTGATGC+TGG - Chr1:89196574-89196593 MsG0180005251.01.T01:intron 40.0%
! CTTCTTCTTCAATGCTGACT+TGG + Chr1:89196756-89196775 None:intergenic 40.0%
! GAGGATGGTTTCATTGATTG+TGG - Chr1:89199091-89199110 MsG0180005251.01.T01:CDS 40.0%
! GTCAACAACACACTGACTAA+AGG + Chr1:89195225-89195244 None:intergenic 40.0%
! GTTTGTTAGGATCGCAATCA+GGG + Chr1:89198033-89198052 None:intergenic 40.0%
! TATCTACCCTTGGAGTACTT+GGG + Chr1:89195916-89195935 None:intergenic 40.0%
! TCCTGAAGTTGATTCATTGC+CGG - Chr1:89198985-89199004 MsG0180005251.01.T01:CDS 40.0%
! TTCCTTGGCAGATCTTTTTG+TGG - Chr1:89195299-89195318 MsG0180005251.01.T01:intron 40.0%
!! AATGGATTATCAAACGTGCC+GGG - Chr1:89199121-89199140 MsG0180005251.01.T01:CDS 40.0%
!! AGGCTCATTGATTTGGTCAA+GGG + Chr1:89196093-89196112 None:intergenic 40.0%
!! AGTTTGTTAGGATCGCAATC+AGG + Chr1:89198034-89198053 None:intergenic 40.0%
!! ATCATTGATTCCACTACTGG+TGG - Chr1:89195684-89195703 MsG0180005251.01.T01:intron 40.0%
!! CAATGACATTTTAGCGTACG+TGG - Chr1:89197254-89197273 MsG0180005251.01.T01:intron 40.0%
!! CTCATCATTGATTCCACTAC+TGG - Chr1:89195681-89195700 MsG0180005251.01.T01:intron 40.0%
!! TAGGCTCATTGATTTGGTCA+AGG + Chr1:89196094-89196113 None:intergenic 40.0%
!! TTACTTTTACAACCTTCCCC+GGG + Chr1:89200035-89200054 None:intergenic 40.0%
AAAAGATCGGTACTTTGCGC+AGG + Chr1:89197171-89197190 None:intergenic 45.0%
AAACTTGACAGCAATGTGGG+AGG + Chr1:89196495-89196514 None:intergenic 45.0%
AACAGCAAGAAGGTAGCTGT+AGG - Chr1:89198742-89198761 MsG0180005251.01.T01:intron 45.0%
AACTTGCCCTTATAGCTCAG+TGG - Chr1:89195040-89195059 MsG0180005251.01.T01:intron 45.0%
ACAATCAGCTTGGGATGTTC+CGG + Chr1:89195655-89195674 None:intergenic 45.0%
ACACACACATATGCTTGTCC+GGG - Chr1:89194869-89194888 MsG0180005251.01.T01:intron 45.0%
ACAGCAAGAAGGTAGCTGTA+GGG - Chr1:89198743-89198762 MsG0180005251.01.T01:intron 45.0%
ACCAGTGGGATGAAAACTTC+AGG - Chr1:89197799-89197818 MsG0180005251.01.T01:intron 45.0%
ACCTAGGTAATCAAAGGGAC+AGG - Chr1:89197289-89197308 MsG0180005251.01.T01:intron 45.0%
ACTACACCCAAGTACTCCAA+GGG - Chr1:89195907-89195926 MsG0180005251.01.T01:intron 45.0%
ACTTCAGTTGTCAGTCCAGT+AGG + Chr1:89196244-89196263 None:intergenic 45.0%
AGACATCCTGAAGTGGTAGT+CGG + Chr1:89196139-89196158 None:intergenic 45.0%
AGAGAAAGTCTCAACCACCA+TGG + Chr1:89196626-89196645 None:intergenic 45.0%
AGCAGGATGATCTATCTACC+TGG - Chr1:89196783-89196802 MsG0180005251.01.T01:intron 45.0%
AGCGTTCATTCAAGTATGCC+TGG - Chr1:89195493-89195512 MsG0180005251.01.T01:intron 45.0%
AGTGGCGAGAATAGAATTGC+AGG + Chr1:89198785-89198804 None:intergenic 45.0%
ATCAGGGTCGTCTCAACATT+AGG + Chr1:89198017-89198036 None:intergenic 45.0%
ATCTCCCTCAAAACCAGAGA+TGG + Chr1:89196012-89196031 None:intergenic 45.0%
ATGCGTCAAACTGTAGCTGT+TGG - Chr1:89196681-89196700 MsG0180005251.01.T01:intron 45.0%
CACAAACCTTGACTGGTACA+AGG - Chr1:89196049-89196068 MsG0180005251.01.T01:intron 45.0%
CACTTGATCTACAAGCTTGG+AGG - Chr1:89195417-89195436 MsG0180005251.01.T01:intron 45.0%
CAGCAAACTTGACAGCAATG+TGG + Chr1:89196499-89196518 None:intergenic 45.0%
CAGGATGTCTACAAGATTGG+AGG - Chr1:89196149-89196168 MsG0180005251.01.T01:intron 45.0%
CATTAACCCACATTGTCACC+AGG + Chr1:89196310-89196329 None:intergenic 45.0%
CTGTTAAGGATCTCAAGCGT+GGG - Chr1:89196342-89196361 MsG0180005251.01.T01:intron 45.0%
CTTCAGTTGTCAGTCCAGTA+GGG + Chr1:89196243-89196262 None:intergenic 45.0%
CTTGTACCAGTCAAGGTTTG+TGG + Chr1:89196051-89196070 None:intergenic 45.0%
CTTGTAGATCAAGTGACCAG+TGG + Chr1:89195412-89195431 None:intergenic 45.0%
GAAACTGGGGAAAAACGCAA+GGG - Chr1:89200914-89200933 MsG0180005251.01.T01:intron 45.0%
GAAGCACATGCATCCTTTAC+AGG + Chr1:89200340-89200359 None:intergenic 45.0%
GAAGCCCATCAGTGATTACA+AGG - Chr1:89199069-89199088 MsG0180005251.01.T01:CDS 45.0%
GACAACTGAAGTCAAGTCTG+TGG - Chr1:89196252-89196271 MsG0180005251.01.T01:CDS 45.0%
GACACACACATATGCTTGTC+CGG - Chr1:89194868-89194887 MsG0180005251.01.T01:intron 45.0%
GAGAAAGTCTCAACCACCAT+GGG + Chr1:89196625-89196644 None:intergenic 45.0%
GAGTAGGGAATTCATTCGGA+AGG - Chr1:89200681-89200700 MsG0180005251.01.T01:intron 45.0%
GCAAAAGTGACAACCATTCC+AGG + Chr1:89196220-89196239 None:intergenic 45.0%
GCAATTCTATTCTCGCCACT+AGG - Chr1:89198785-89198804 MsG0180005251.01.T01:intron 45.0%
GCAGGATGATCTATCTACCT+GGG - Chr1:89196784-89196803 MsG0180005251.01.T01:intron 45.0%
GCGTTCATTCAAGTATGCCT+GGG - Chr1:89195494-89195513 MsG0180005251.01.T01:intron 45.0%
GCTCTACCACTGAGCTATAA+GGG + Chr1:89195049-89195068 None:intergenic 45.0%
GGAGCCCAAATCTTGAAGAA+TGG - Chr1:89196565-89196584 MsG0180005251.01.T01:intron 45.0%
GGTAGATAGATCATCCTGCT+CGG + Chr1:89196783-89196802 None:intergenic 45.0%
GGTCACTTGATCTACAAGCT+TGG - Chr1:89195414-89195433 MsG0180005251.01.T01:intron 45.0%
GGTTGCAGCTAAACAACCTT+TGG - Chr1:89200300-89200319 MsG0180005251.01.T01:intron 45.0%
GTAAAGGATGCATGTGCTTC+AGG - Chr1:89200340-89200359 MsG0180005251.01.T01:intron 45.0%
GTAAGCAAGCAGTAAGTTCC+AGG - Chr1:89197016-89197035 MsG0180005251.01.T01:intron 45.0%
GTATGTTGCCTCAAACTCCA+AGG - Chr1:89196364-89196383 MsG0180005251.01.T01:intron 45.0%
GTTCAGCCTTAAGCTTGTCA+AGG + Chr1:89195521-89195540 None:intergenic 45.0%
TAAATTTAGGGGCTCCTACC+TGG + Chr1:89197211-89197230 None:intergenic 45.0%
TAATGAAATCCCTGTGTCCG+GGG + Chr1:89195620-89195639 None:intergenic 45.0%
TACTACACCCAAGTACTCCA+AGG - Chr1:89195906-89195925 MsG0180005251.01.T01:intron 45.0%
TAGACATGCACACATCAGCA+AGG + Chr1:89199700-89199719 None:intergenic 45.0%
TCACACCAAGAGTGAAAGCA+AGG + Chr1:89195758-89195777 None:intergenic 45.0%
TCAGATGGAGCCCTTTAACT+CGG - Chr1:89194899-89194918 MsG0180005251.01.T01:intron 45.0%
TCCGGCAATGAATCAACTTC+AGG + Chr1:89198989-89199008 None:intergenic 45.0%
TCCTGTCCCTTTGATTACCT+AGG + Chr1:89197293-89197312 None:intergenic 45.0%
TCGGAAACAGAACTAGCTAG+AGG + Chr1:89199252-89199271 None:intergenic 45.0%
TCTCCCTCAAAACCAGAGAT+GGG + Chr1:89196011-89196030 None:intergenic 45.0%
TGACAAGCTTAAGGCTGAAC+GGG - Chr1:89195521-89195540 MsG0180005251.01.T01:intron 45.0%
TGCGTCAAACTGTAGCTGTT+GGG - Chr1:89196682-89196701 MsG0180005251.01.T01:intron 45.0%
TGCTCTACCACTGAGCTATA+AGG + Chr1:89195050-89195069 None:intergenic 45.0%
TGTAAAGTTAGCAGCCTCCT+TGG + Chr1:89196399-89196418 None:intergenic 45.0%
TGTCATACATGGCTACGTTC+AGG - Chr1:89200857-89200876 MsG0180005251.01.T01:intron 45.0%
TTAAGCTTTGCTGGGGCATA+TGG - Chr1:89197101-89197120 MsG0180005251.01.T01:intron 45.0%
TTCAGTTGTCAGTCCAGTAG+GGG + Chr1:89196242-89196261 None:intergenic 45.0%
TTGATTTCCCAGAGTCGACA+TGG + Chr1:89195386-89195405 None:intergenic 45.0%
! AAAGACTCAGGGGGTTGATT+AGG - Chr1:89200651-89200670 MsG0180005251.01.T01:intron 45.0%
! AAGCAAGGAGAGCATGTTCA+CGG + Chr1:89195743-89195762 None:intergenic 45.0%
! ACCTGAAGTTTTCATCCCAC+TGG + Chr1:89197803-89197822 None:intergenic 45.0%
! GAAGCCGGTATTTCTAAGGA+TGG - Chr1:89195711-89195730 MsG0180005251.01.T01:intron 45.0%
! GAAGTTGATTCATTGCCGGA+TGG - Chr1:89198989-89199008 MsG0180005251.01.T01:CDS 45.0%
! GCCTCTTAGGCTCATTGATT+TGG + Chr1:89196100-89196119 None:intergenic 45.0%
! TACTTTTACAACCTTCCCCG+GGG + Chr1:89200034-89200053 None:intergenic 45.0%
! TTTTCACCTCTCAGACTGCT+CGG - Chr1:89199206-89199225 MsG0180005251.01.T01:CDS 45.0%
!! AGAACTGGGTTCTAGATCGA+CGG - Chr1:89196927-89196946 MsG0180005251.01.T01:intron 45.0%
!! GACAAAAGCACTGCCTGTAA+AGG - Chr1:89200324-89200343 MsG0180005251.01.T01:intron 45.0%
!! GTATTGGCTGAAAGAGATGC+AGG - Chr1:89200998-89201017 MsG0180005251.01.T01:intron 45.0%
!!! ACTACTGGTGGTTTTGAAGC+CGG - Chr1:89195696-89195715 MsG0180005251.01.T01:intron 45.0%
!!! ATGGAATTTTTAGGTGCCCC+TGG - Chr1:89199608-89199627 MsG0180005251.01.T01:CDS 45.0%
!!! GTTCCCATCTCTGGTTTTGA+GGG - Chr1:89196005-89196024 MsG0180005251.01.T01:intron 45.0%
!!! TGGAATTTTTAGGTGCCCCT+GGG - Chr1:89199609-89199628 MsG0180005251.01.T01:intron 45.0%
!!! TGTTCCCATCTCTGGTTTTG+AGG - Chr1:89196004-89196023 MsG0180005251.01.T01:intron 45.0%
!! AAAATTATTATTAATTAAAG+TGG + Chr1:89200072-89200091 None:intergenic 5.0%
!! TTTAAAAATAAAATAAAATC+AGG + Chr1:89198852-89198871 None:intergenic 5.0%
AAATGGGACCTATTGCACCC+AGG + Chr1:89199629-89199648 None:intergenic 50.0%
AACCCACATTGTCACCAGGA+AGG + Chr1:89196306-89196325 None:intergenic 50.0%
AATGAAATCCCTGTGTCCGG+GGG + Chr1:89195619-89195638 None:intergenic 50.0%
AATGGGACCTATTGCACCCA+GGG + Chr1:89199628-89199647 None:intergenic 50.0%
ACCCACATTGTCACCAGGAA+GGG + Chr1:89196305-89196324 None:intergenic 50.0%
AGGAATTGGAACTGTGCCTG+TGG - Chr1:89196169-89196188 MsG0180005251.01.T01:intron 50.0%
AGGTGTGGCAGTCAAGAACA+GGG + Chr1:89196475-89196494 None:intergenic 50.0%
ATCCTGAAGTGGTAGTCGGA+GGG + Chr1:89196135-89196154 None:intergenic 50.0%
CATAGCCATTTCCATCTGGC+TGG + Chr1:89196451-89196470 None:intergenic 50.0%
CATCAAGGCTGTGGAGAAGA+AGG - Chr1:89196706-89196725 MsG0180005251.01.T01:intron 50.0%
CTGGGTCCTTGACAAGCTTA+AGG - Chr1:89195512-89195531 MsG0180005251.01.T01:intron 50.0%
CTGTAGCTGTTGGGTCATCA+AGG - Chr1:89196691-89196710 MsG0180005251.01.T01:intron 50.0%
CTTAAGCTTGTCAAGGACCC+AGG + Chr1:89195514-89195533 None:intergenic 50.0%
CTTAAGGCTGAACGGGAAAG+AGG - Chr1:89195528-89195547 MsG0180005251.01.T01:intron 50.0%
GAAACAGAGTCAGCAAGTCC+TGG + Chr1:89197037-89197056 None:intergenic 50.0%
GAAATGAATTGCCCTCACGC+AGG + Chr1:89195107-89195126 None:intergenic 50.0%
GAAGAAGAAGTGAACCGAGC+AGG - Chr1:89196766-89196785 MsG0180005251.01.T01:intron 50.0%
GAATTGGAACTGTGCCTGTG+GGG - Chr1:89196171-89196190 MsG0180005251.01.T01:intron 50.0%
GAGAACGGCACAATCAGCTT+GGG + Chr1:89195664-89195683 None:intergenic 50.0%
GATTGATAGGCGTTCCGGTA+AGG - Chr1:89196532-89196551 MsG0180005251.01.T01:CDS 50.0%
GCATCATGAAGCTCTCACAG+AGG - Chr1:89196279-89196298 MsG0180005251.01.T01:CDS 50.0%
GCCCATCAGTGATTACAAGG+AGG - Chr1:89199072-89199091 MsG0180005251.01.T01:CDS 50.0%
GCTCTCCTTGCTTTCACTCT+TGG - Chr1:89195750-89195769 MsG0180005251.01.T01:intron 50.0%
GCTGTTAAGGATCTCAAGCG+TGG - Chr1:89196341-89196360 MsG0180005251.01.T01:intron 50.0%
GCTTCTGGATGGTTGAGACT+CGG + Chr1:89199271-89199290 None:intergenic 50.0%
GGAAACTGGGGAAAAACGCA+AGG - Chr1:89200913-89200932 MsG0180005251.01.T01:intron 50.0%
GGAATTGGAACTGTGCCTGT+GGG - Chr1:89196170-89196189 MsG0180005251.01.T01:intron 50.0%
GGCTTCAAAACCACCAGTAG+TGG + Chr1:89195697-89195716 None:intergenic 50.0%
GGCTTCTCTTGTTCAGGAGT+TGG + Chr1:89199055-89199074 None:intergenic 50.0%
GTAGATCAAGTGACCAGTGG+TGG + Chr1:89195409-89195428 None:intergenic 50.0%
GTCTGCTTAAGTCCTCCACT+GGG + Chr1:89196734-89196753 None:intergenic 50.0%
TCTAACAGCAAAACGCCGAG+TGG + Chr1:89196658-89196677 None:intergenic 50.0%
TCTGGGAAATCAACCACCAC+TGG - Chr1:89195393-89195412 MsG0180005251.01.T01:intron 50.0%
TGAGAACGGCACAATCAGCT+TGG + Chr1:89195665-89195684 None:intergenic 50.0%
TGGCTGAAAGAGATGCAGGT+TGG - Chr1:89201002-89201021 MsG0180005251.01.T01:intron 50.0%
TGGGTCATCCTTGGAGTTTG+AGG + Chr1:89196375-89196394 None:intergenic 50.0%
TGTTCAGGAGTTGGAGTAGC+AGG + Chr1:89199046-89199065 None:intergenic 50.0%
TTGACAAGCGTGTCATCGAG+AGG - Chr1:89195442-89195461 MsG0180005251.01.T01:intron 50.0%
TTGGACCCTTGTACCAGTCA+AGG + Chr1:89196058-89196077 None:intergenic 50.0%
TTGGTCAAGGGCCTCAAGAA+GGG + Chr1:89196081-89196100 None:intergenic 50.0%
TTTGGTCAAGGGCCTCAAGA+AGG + Chr1:89196082-89196101 None:intergenic 50.0%
! ACTTTTACAACCTTCCCCGG+GGG + Chr1:89200033-89200052 None:intergenic 50.0%
! AGCAAGGAGAGCATGTTCAC+GGG + Chr1:89195742-89195761 None:intergenic 50.0%
! GCTGGGGCATATGGTTCTAT+TGG - Chr1:89197110-89197129 MsG0180005251.01.T01:intron 50.0%
! GGCAGTGCTTTTGTCTCCAA+AGG + Chr1:89200319-89200338 None:intergenic 50.0%
!! ATTGCCGGATGGGTTTGTTG+AGG - Chr1:89199000-89199019 MsG0180005251.01.T01:CDS 50.0%
!! CAAAAGGGGCATCGATGGTT+AGG + Chr1:89199351-89199370 None:intergenic 50.0%
!! CTGATGGGCTTCTCTTGTTC+AGG + Chr1:89199061-89199080 None:intergenic 50.0%
!! GTCTACAAAAGGGGCATCGA+TGG + Chr1:89199356-89199375 None:intergenic 50.0%
!! TCAGGAAGCTGGTTTGCTTC+TGG + Chr1:89198971-89198990 None:intergenic 50.0%
!! TCATTGGCCATGTCGACTCT+GGG - Chr1:89195376-89195395 MsG0180005251.01.T01:intron 50.0%
!! TTGCCGGATGGGTTTGTTGA+GGG - Chr1:89199001-89199020 MsG0180005251.01.T01:CDS 50.0%
!!! GTTGTCACTTTTGCCCCTAC+TGG - Chr1:89196226-89196245 MsG0180005251.01.T01:CDS 50.0%
AACAGCAAAACGCCGAGTGG+AGG + Chr1:89196655-89196674 None:intergenic 55.0%
AAGTTAGCAGCCTCCTTGGC+TGG + Chr1:89196395-89196414 None:intergenic 55.0%
AATCACCATGGCCAGCCAGA+TGG - Chr1:89196437-89196456 MsG0180005251.01.T01:CDS 55.0%
ACTCGGAGAGTCCGAGAGAA+AGG + Chr1:89200513-89200532 None:intergenic 55.0%
AGACGGAGTTCAAATCCCCC+GGG - Chr1:89200015-89200034 MsG0180005251.01.T01:CDS 55.0%
AGCGCTCCACAAACCTTGAC+TGG - Chr1:89196042-89196061 MsG0180005251.01.T01:intron 55.0%
AGTAGCAGGCGCAACAGGTT+CGG + Chr1:89199032-89199051 None:intergenic 55.0%
AGTCTCAACCACCATGGGCT+TGG + Chr1:89196620-89196639 None:intergenic 55.0%
AGTTAGCAGCCTCCTTGGCT+GGG + Chr1:89196394-89196413 None:intergenic 55.0%
ATGGGACCTATTGCACCCAG+GGG + Chr1:89199627-89199646 None:intergenic 55.0%
CAAGGGTCCAACCCTTCTTG+AGG - Chr1:89196067-89196086 MsG0180005251.01.T01:intron 55.0%
CATCCTGAAGTGGTAGTCGG+AGG + Chr1:89196136-89196155 None:intergenic 55.0%
CATGGCCAGCCAGATGGAAA+TGG - Chr1:89196443-89196462 MsG0180005251.01.T01:CDS 55.0%
CCTCACGCAGGATCGAACTA+CGG + Chr1:89195095-89195114 None:intergenic 55.0%
CGTAGTTCGATCCTGCGTGA+GGG - Chr1:89195093-89195112 MsG0180005251.01.T01:intron 55.0%
CTGTTGGGTCATCAAGGCTG+TGG - Chr1:89196697-89196716 MsG0180005251.01.T01:intron 55.0%
GAGAAGAAGGATCCCAGTGG+AGG - Chr1:89196719-89196738 MsG0180005251.01.T01:intron 55.0%
GAGACGGAGTTCAAATCCCC+CGG - Chr1:89200014-89200033 MsG0180005251.01.T01:CDS 55.0%
GAGGTGTGGCAGTCAAGAAC+AGG + Chr1:89196476-89196495 None:intergenic 55.0%
GATGATTCCCACCAAGCCCA+TGG - Chr1:89196606-89196625 MsG0180005251.01.T01:intron 55.0%
GATGGAGCCCTTTAACTCGG+TGG - Chr1:89194902-89194921 MsG0180005251.01.T01:intron 55.0%
GCCCTTCCTGGTGACAATGT+GGG - Chr1:89196301-89196320 MsG0180005251.01.T01:CDS 55.0%
GCTCCATCTGAGTCAAGTCC+CGG + Chr1:89194890-89194909 None:intergenic 55.0%
GGATGCATGTGCTTCAGGGA+TGG - Chr1:89200345-89200364 MsG0180005251.01.T01:intron 55.0%
GGCTTGTCTGAAGGCCTCTT+AGG + Chr1:89196113-89196132 None:intergenic 55.0%
GGGGCATAGCCATTTCCATC+TGG + Chr1:89196455-89196474 None:intergenic 55.0%
GGTCTGCTTAAGTCCTCCAC+TGG + Chr1:89196735-89196754 None:intergenic 55.0%
GGTGTGGCAGTCAAGAACAG+GGG + Chr1:89196474-89196493 None:intergenic 55.0%
GTGCCCTCAACAAACCCATC+CGG + Chr1:89199007-89199026 None:intergenic 55.0%
GTGGAGAAGAAGGATCCCAG+TGG - Chr1:89196716-89196735 MsG0180005251.01.T01:intron 55.0%
TCAAGGGCCTCAAGAAGGGT+TGG + Chr1:89196077-89196096 None:intergenic 55.0%
TCCTGAAGTGGTAGTCGGAG+GGG + Chr1:89196134-89196153 None:intergenic 55.0%
TCGGTGGTAGAGTAACACCG+TGG - Chr1:89194918-89194937 MsG0180005251.01.T01:intron 55.0%
TGACAGCAATGTGGGAGGTG+TGG + Chr1:89196490-89196509 None:intergenic 55.0%
TGCACTGTCATTGATGCCCC+CGG - Chr1:89195600-89195619 MsG0180005251.01.T01:intron 55.0%
TGTCCGGGACTTGACTCAGA+TGG - Chr1:89194884-89194903 MsG0180005251.01.T01:intron 55.0%
! ACCTTTTCAACACGCCCCAC+AGG + Chr1:89196188-89196207 None:intergenic 55.0%
! CATTTCCATCTGGCTGGCCA+TGG + Chr1:89196445-89196464 None:intergenic 55.0%
! TCAACCACCATGGGCTTGGT+GGG + Chr1:89196616-89196635 None:intergenic 55.0%
!! ACTGGGTTCTAGATCGACGG+TGG - Chr1:89196930-89196949 MsG0180005251.01.T01:intron 55.0%
!! GTCATTGGCCATGTCGACTC+TGG - Chr1:89195375-89195394 MsG0180005251.01.T01:intron 55.0%
AGTCGGAGGGGCTTGTCTGA+AGG + Chr1:89196122-89196141 None:intergenic 60.0%
CAAGGATGACCCAGCCAAGG+AGG - Chr1:89196382-89196401 MsG0180005251.01.T01:intron 60.0%
CATTGATGCCCCCGGACACA+GGG - Chr1:89195608-89195627 MsG0180005251.01.T01:intron 60.0%
CCGTAGTTCGATCCTGCGTG+AGG - Chr1:89195092-89195111 MsG0180005251.01.T01:intron 60.0%
CTCAACCACCATGGGCTTGG+TGG + Chr1:89196617-89196636 None:intergenic 60.0%
CTCCAAGGATGACCCAGCCA+AGG - Chr1:89196379-89196398 MsG0180005251.01.T01:intron 60.0%
CTCCTTGGCTGGGTCATCCT+TGG + Chr1:89196384-89196403 None:intergenic 60.0%
GACGGAGTTCAAATCCCCCG+GGG - Chr1:89200016-89200035 MsG0180005251.01.T01:CDS 60.0%
GAGTTCAAATCCCCCGGGGA+AGG - Chr1:89200020-89200039 MsG0180005251.01.T01:CDS 60.0%
GATTCCCACCAAGCCCATGG+TGG - Chr1:89196609-89196628 MsG0180005251.01.T01:intron 60.0%
GCCTGTGGGGCGTGTTGAAA+AGG - Chr1:89196184-89196203 MsG0180005251.01.T01:intron 60.0%
GGCCCTTCCTGGTGACAATG+TGG - Chr1:89196300-89196319 MsG0180005251.01.T01:CDS 60.0%
GTTGGAGTAGCAGGCGCAAC+AGG + Chr1:89199037-89199056 None:intergenic 60.0%
TAGGTGCCCCTGGGTGCAAT+AGG - Chr1:89199618-89199637 MsG0180005251.01.T01:intron 60.0%
TCACCTCTCAGACTGCTCGG+TGG - Chr1:89199209-89199228 MsG0180005251.01.T01:intron 60.0%
TCATTGATGCCCCCGGACAC+AGG - Chr1:89195607-89195626 MsG0180005251.01.T01:intron 60.0%
! CTCTCAGACTGCTCGGTGGA+GGG - Chr1:89199213-89199232 MsG0180005251.01.T01:intron 60.0%
CCTCCACCGAGCAGTCTGAG+AGG + Chr1:89199215-89199234 None:intergenic 65.0%
GCCCCTCCGACTACCACTTC+AGG - Chr1:89196130-89196149 MsG0180005251.01.T01:intron 65.0%
GCTCTCACAGAGGCCCTTCC+TGG - Chr1:89196289-89196308 MsG0180005251.01.T01:CDS 65.0%
! CCTCTCAGACTGCTCGGTGG+AGG - Chr1:89199212-89199231 MsG0180005251.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 89194486 89201039 89194486 ID=MsG0180005251.01;Name=MsG0180005251.01
Chr1 mRNA 89194486 89201039 89194486 ID=MsG0180005251.01.T01;Parent=MsG0180005251.01;Name=MsG0180005251.01.T01;_AED=0.49;_eAED=0.52;_QI=93|0.22|0.2|1|0.77|0.8|10|0|499
Chr1 exon 89201020 89201039 89201020 ID=MsG0180005251.01.T01:exon:14587;Parent=MsG0180005251.01.T01
Chr1 exon 89200858 89200925 89200858 ID=MsG0180005251.01.T01:exon:14586;Parent=MsG0180005251.01.T01
Chr1 exon 89199722 89200188 89199722 ID=MsG0180005251.01.T01:exon:14585;Parent=MsG0180005251.01.T01
Chr1 exon 89199597 89199627 89199597 ID=MsG0180005251.01.T01:exon:14584;Parent=MsG0180005251.01.T01
Chr1 exon 89199320 89199534 89199320 ID=MsG0180005251.01.T01:exon:14583;Parent=MsG0180005251.01.T01
Chr1 exon 89198977 89199226 89198977 ID=MsG0180005251.01.T01:exon:14582;Parent=MsG0180005251.01.T01
Chr1 exon 89196383 89196571 89196383 ID=MsG0180005251.01.T01:exon:14581;Parent=MsG0180005251.01.T01
Chr1 exon 89196186 89196326 89196186 ID=MsG0180005251.01.T01:exon:14580;Parent=MsG0180005251.01.T01
Chr1 exon 89195132 89195217 89195132 ID=MsG0180005251.01.T01:exon:14579;Parent=MsG0180005251.01.T01
Chr1 exon 89194486 89194611 89194486 ID=MsG0180005251.01.T01:exon:14578;Parent=MsG0180005251.01.T01
Chr1 five_prime_UTR 89201020 89201039 89201020 ID=MsG0180005251.01.T01:five_prime_utr;Parent=MsG0180005251.01.T01
Chr1 five_prime_UTR 89200858 89200925 89200858 ID=MsG0180005251.01.T01:five_prime_utr;Parent=MsG0180005251.01.T01
Chr1 five_prime_UTR 89200184 89200188 89200184 ID=MsG0180005251.01.T01:five_prime_utr;Parent=MsG0180005251.01.T01
Chr1 CDS 89199722 89200183 89199722 ID=MsG0180005251.01.T01:cds;Parent=MsG0180005251.01.T01
Chr1 CDS 89199597 89199627 89199597 ID=MsG0180005251.01.T01:cds;Parent=MsG0180005251.01.T01
Chr1 CDS 89199320 89199534 89199320 ID=MsG0180005251.01.T01:cds;Parent=MsG0180005251.01.T01
Chr1 CDS 89198977 89199226 89198977 ID=MsG0180005251.01.T01:cds;Parent=MsG0180005251.01.T01
Chr1 CDS 89196383 89196571 89196383 ID=MsG0180005251.01.T01:cds;Parent=MsG0180005251.01.T01
Chr1 CDS 89196186 89196326 89196186 ID=MsG0180005251.01.T01:cds;Parent=MsG0180005251.01.T01
Chr1 CDS 89195132 89195217 89195132 ID=MsG0180005251.01.T01:cds;Parent=MsG0180005251.01.T01
Chr1 CDS 89194486 89194611 89194486 ID=MsG0180005251.01.T01:cds;Parent=MsG0180005251.01.T01
Gene Sequence

>MsG0180005251.01.T01

ATGGGTAAGGAAAAGGTTCACATCAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAATCAACCACCACTGGTCACTTGATCTACAAGCTTGGAGGTATTGACAAGCGTGTCATCGAGAGGTTTGAGAAAGAAGCAGCTGAGATGAACAAGCGTTCATTCAAGTATGCCTGGGTCCTTGACAAGCTTAAGGCTGAACGGGAAAGAGGTATCACCATTGACATTGCTCTTTGGAAGTTTGAGACAACCAAGTACTACTGCACTGTCATTGATGCCCCCGGACACAGGGATTTCATTAAGAACATGATCACCGGAACATCCCAAGCTGATTGTGCCGTTCTCATCATTGATTCCACTACTGGTGGTTTTGAAGCCGGTATTTCTAAGGATGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATCTGCTGTTGCAACAAGATGGATGCTACTACACCCAAGTACTCCAAGGACAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGAGATAACATGATCGAGCGCTCCACAAACCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCCCTTGACCAAATCAATGAGCCTAAGAGGCCTTCAGACAAGCCCCTCCGACTACCACTTCAGGATGTCTACAAGATTGGAGGAATTGGAACTGTGCCTGTGGGGCGTGTTGAAAAGAGGCCCTTCCTGGTGACAATGTGGGTTAATGTCAAGAATGTTGCTGTTAAGGATCTCAAGCGTGGGTATGTTGCCTCAAACTCCAAGGATGACCCAGCCAAGGAGGCTGCTAACTTTACATCTCAAGTGATCATAATGAATCACCATGGCCAGCCAGATGGAAATGGCTATGCCCCTGTTCTTGACTGCCACACCTCCCACATTGCTGTCAAGTTTGCTGAGCTTGTTACTAAGATTGATAGGCGTTCCGGAAAAATGCAAAATCCAGAAGCAAACCAGCTTCCTGAAGTTGATTCATTGCCGGATGGGTTTGTTGAGGGCACTGCCGAACCTGTTGCGCCTGCTACTCCAACTCCTGAACAAGAGAAGCCCATCAGTGATTACAAGGAGGATGGTTTCATTGATTGTGGTCATTCTAATGGATTATCAAACGTGCCGGCATTTACTTTTCACCTCTCAGACTGCTCGGTGGAGGGACATATTGCAGCACCTCTAGCTAGTTCTGTTTCCGAGTCTCAACCATCCAGAAGCAATGATGTAAAAGAGCAACAACAAGGAGAAGGCCAGAGTTCAGATAAATCTAAACAACCTTTGGAGACAAAAGCACTGCCTGTAAAGGATGCATGTGCTTCAGGGATGGTTGATTCTTCAAAAAACAAAAAATCAGAAACTGGGGAAAAACGCAAGGGTTCAAAGCGTGCACTTAAATCAGAAAAGGAGCTCTTAGAGTTTTCACTCAAGTATCAACAAGTATTGGCTGAAAGAGATGCAGGTTGGAATGAATATATCTGA
Protein sequence

>MsG0180005251.01.T01

MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVEKRPFLVTMWVNVKNVAVKDLKRGYVASNSKDDPAKEAANFTSQVIIMNHHGQPDGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKMQNPEANQLPEVDSLPDGFVEGTAEPVAPATPTPEQEKPISDYKEDGFIDCGHSNGLSNVPAFTFHLSDCSVEGHIAAPLASSVSESQPSRSNDVKEQQQGEGQSSDKSKQPLETKALPVKDACASGMVDSSKNKKSETGEKRKGSKRALKSEKELLEFSLKYQQVLAERDAGWNEYI*