AlfalfaGEDB | MsG0180005273.01

M. sativa cultivar ZhongmuNo.1 / MsG0180005273.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005273.01.T01	XP_013469501.1	90.323	62	6	0	10	71	144	205	9.26E-33	122

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005273.01.T01	A0A072VNF1	90.323	62	6	0	10	71	144	205	4.42e-33	122

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180005273.01	MsG0680033745.01	0.804389	2.211873e-49	1.138982e-46
MsG0180005273.01	MsG0780040160.01	0.818299	2.107072e-52	1.571177e-49
MsG0180005273.01	MsG0780040292.01	0.823633	1.246856e-53	1.079577e-50

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180005273.01.T01	MTR_1g096170	90.323	62	6	0	10	71	144	205	1.12e-36	122
MsG0180005273.01.T01	MTR_1g096170	90.323	62	6	0	10	71	139	200	1.36e-36	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 27 sgRNAs with CRISPR-Local

Find 28 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGCGTATGGATCTCACTT+TGG	0.547698	1:-89457236	MsG0180005273.01.T01:CDS
AATGCGTATGGATCTCACTT+TGG	0.547698	1:-89457321	None:intergenic
ACCGACCAATCTAATGCGTA+TGG	0.537772	1:-89457248	MsG0180005273.01.T01:CDS
AGATTGGGCTAACTGCATCA+GGG	0.658192	1:+89457138	None:intergenic
AGTAAGGTGGGTAAGAGATT+GGG	0.492624	1:+89457123	None:intergenic
ATCTATTGAAAATATTAGTA+AGG	0.490677	1:+89457107	None:intergenic
ATTGAAAATATTAGTAAGGT+GGG	0.489596	1:+89457111	None:intergenic
CAGGGCGACGTGGCCTGGAA+CGG	0.550905	1:+89457156	None:intergenic
CATTAGATTGGTCGGTTGCA+CGG	0.455879	1:+89457255	None:intergenic
CTAACTGCATCAGGGCGACG+TGG	0.635502	1:+89457146	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGCGTATGGATCTCACTT+TGG	-	Chr1:89457199-89457218	MsG0180005273.01.T01:CDS	40.0%
AGTAAGGTGGGTAAGAGATT+GGG	+	Chr1:89457315-89457334	None:intergenic	40.0%
CTCTCCAACTATAGTCCAAA+TGG	+	Chr1:89457146-89457165	None:intergenic	40.0%
GAGATCCATACGCATTAGAT+TGG	+	Chr1:89457195-89457214	None:intergenic	40.0%
GCAACCATTTGGACTATAGT+CGG	-	Chr1:89457139-89457158	MsG0180005273.01.T01:CDS	40.0%
GCAACCATTTGGACTATAGT+TGG	-	Chr1:89457139-89457158	MsG0180005273.01.T01:CDS	40.0%
TAGTAAGGTGGGTAAGAGAT+TGG	+	Chr1:89457316-89457335	None:intergenic	40.0%
TCCATACGCATTAGATTGGT+CGG	+	Chr1:89457191-89457210	None:intergenic	40.0%
ACCGACCAATCTAATGCGTA+TGG	-	Chr1:89457187-89457206	MsG0180005273.01.T01:CDS	45.0%
AGATTGGGCTAACTGCATCA+GGG	+	Chr1:89457300-89457319	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	89457121	89457336	89457121	ID=MsG0180005273.01;Name=MsG0180005273.01
Chr1	mRNA	89457121	89457336	89457121	ID=MsG0180005273.01.T01;Parent=MsG0180005273.01;Name=MsG0180005273.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|71
Chr1	exon	89457121	89457336	89457121	ID=MsG0180005273.01.T01:exon:47762;Parent=MsG0180005273.01.T01
Chr1	CDS	89457121	89457336	89457121	ID=MsG0180005273.01.T01:cds;Parent=MsG0180005273.01.T01

Gene Sequence	>MsG0180005273.01.T01 ATGGATCTCACTTTGGTGGCAACCATTTGGACTATAGTTGGAGAGCTTTTGGGGAGGAACCGTGCAACCGACCAATCTAATGCGTATGGATCTCACTTTGGTGGCAACCATTTGGACTATAGTCGGAGAGCTTTTGGGGAGGAACTGGATAACGCTAGCCGTTCCAGGCCACGTCGCCCTGATGCAGTTAGCCCAATCTCTTACCCACCTTACTAA
Protein sequence	>MsG0180005273.01.T01 MDLTLVATIWTIVGELLGRNRATDQSNAYGSHFGGNHLDYSRRAFGEELDNASRSRPRRPDAVSPISYPPY*