Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180005781.01.T01 | XP_013470006.1 | 99.061 | 213 | 2 | 0 | 1 | 213 | 1 | 213 | 6.26E-152 | 430 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180005781.01.T01 | O64628 | 77.885 | 208 | 45 | 1 | 6 | 213 | 5 | 211 | 1.38E-118 | 338 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180005781.01 | MsG0280010794.01 | 0.814591 | 1.425094e-51 | 9.602063e-49 |
MsG0180005781.01 | MsG0280011149.01 | 0.800973 | 1.120889e-48 | 5.290779e-46 |
MsG0180005781.01 | MsG0380016389.01 | 0.808479 | 3.034678e-50 | 1.737077e-47 |
MsG0180005781.01 | MsG0380016733.01 | 0.815204 | 1.042282e-51 | 7.139558e-49 |
MsG0180005781.01 | MsG0480018084.01 | 0.806432 | 8.251661e-50 | 4.477992e-47 |
MsG0180005781.01 | MsG0480023559.01 | 0.815390 | 9.474361e-52 | 6.523473e-49 |
MsG0180005781.01 | MsG0680035848.01 | 0.806098 | 9.701776e-50 | 5.220352e-47 |
MsG0180005781.01 | MsG0880043095.01 | 0.804406 | 2.193238e-49 | 1.129871e-46 |
MsG0180005781.01 | MsG0880045072.01 | 0.811052 | 8.487645e-51 | 5.200873e-48 |
MsG0180005781.01 | MsG0880046444.01 | 0.809393 | 1.935163e-50 | 1.134828e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180005781.01.T01 | MTR_1g106955 | 99.061 | 213 | 2 | 0 | 1 | 213 | 1 | 213 | 7.58e-156 | 430 |
MsG0180005781.01.T01 | MTR_8g076890 | 42.675 | 157 | 88 | 2 | 25 | 180 | 105 | 260 | 1.86e-38 | 134 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180005781.01.T01 | AT2G18990 | 77.885 | 208 | 45 | 1 | 6 | 213 | 5 | 211 | 1.41e-119 | 338 |
MsG0180005781.01.T01 | AT3G25580 | 77.404 | 208 | 45 | 2 | 6 | 213 | 5 | 210 | 1.38e-118 | 336 |
MsG0180005781.01.T01 | AT3G25580 | 77.073 | 205 | 45 | 2 | 9 | 213 | 3 | 205 | 1.30e-116 | 330 |
MsG0180005781.01.T01 | AT5G66410 | 36.585 | 205 | 123 | 4 | 7 | 209 | 28 | 227 | 1.09e-38 | 133 |
MsG0180005781.01.T01 | AT3G50960 | 42.000 | 150 | 85 | 2 | 23 | 171 | 40 | 188 | 4.08e-37 | 129 |
MsG0180005781.01.T01 | AT3G50960 | 42.000 | 150 | 85 | 2 | 23 | 171 | 40 | 188 | 4.08e-37 | 129 |
Find 61 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGACAAGCATTTAAGTATTT+TGG | 0.171906 | 1:+96104830 | MsG0180005781.01.T01:CDS |
GTTGCAGCCTCCTTTCTCTT+AGG | 0.207376 | 1:-96104167 | None:intergenic |
TATCAATTGCCAGTCTTGTT+TGG | 0.266888 | 1:+96105467 | MsG0180005781.01.T01:three_prime_UTR |
GCAAAGGACAAACACATTAA+AGG | 0.268507 | 1:-96105563 | None:intergenic |
TACTGCATAAAAGTAATTCT+TGG | 0.286458 | 1:-96105599 | None:intergenic |
TGACTTTAGCACCGAGGTTT+TGG | 0.292143 | 1:+96105142 | MsG0180005781.01.T01:CDS |
GTCATTTCTTCCGCGAAAAT+TGG | 0.299383 | 1:+96104310 | MsG0180005781.01.T01:CDS |
CGAAATTGTGCGAACCTTGC+AGG | 0.328390 | 1:-96104334 | None:intergenic |
TTGCAGCCTCCTTTCTCTTA+GGG | 0.338559 | 1:-96104166 | None:intergenic |
ATCTGAGCTCTCGTCTTTCC+AGG | 0.348336 | 1:-96105332 | None:intergenic |
GCTCTGCCGAACACTTCTTT+TGG | 0.354451 | 1:-96105243 | None:intergenic |
CTTATAGTGATTAGAATCAT+TGG | 0.355260 | 1:-96105507 | None:intergenic |
TCAATACACCGTGCAAGGTC+CGG | 0.394040 | 1:+96105212 | MsG0180005781.01.T01:CDS |
GCTGCAACAAATGAAGAAAA+TGG | 0.402598 | 1:+96104182 | MsG0180005781.01.T01:CDS |
CTTGATTCTCGATCACCTCT+TGG | 0.414878 | 1:-96104059 | None:intergenic |
CAATACACCGTGCAAGGTCC+GGG | 0.431500 | 1:+96105213 | MsG0180005781.01.T01:CDS |
CGAGGGAGAGAGATCGATCT+AGG | 0.451921 | 1:+96104010 | MsG0180005781.01.T01:five_prime_UTR |
AACATTTGCTTCATGACTAC+AGG | 0.477196 | 1:-96105630 | None:intergenic |
TTTGCGCCCCGGACCTTGCA+CGG | 0.490890 | 1:-96105220 | None:intergenic |
GTCTTTCTCTGACGGAATCT+CGG | 0.495284 | 1:-96104250 | None:intergenic |
CGCAAACCAAAAGAAGTGTT+CGG | 0.506657 | 1:+96105237 | MsG0180005781.01.T01:CDS |
CGGTGTAATCTCCGTGTCCG+AGG | 0.513907 | 1:-96104230 | None:intergenic |
CGTCATCGTCGAGACGTTCA+AGG | 0.517999 | 1:-96104134 | None:intergenic |
AGAATCATTGGTACAATCAT+CGG | 0.521116 | 1:-96105495 | None:intergenic |
ATCTTGAAGCCCTAAGAGAA+AGG | 0.527404 | 1:+96104157 | MsG0180005781.01.T01:CDS |
CGAAGCAGCATATTGAGACT+CGG | 0.534134 | 1:+96104853 | MsG0180005781.01.T01:CDS |
TTCTTTATGAGAGCAATAGT+AGG | 0.546329 | 1:-96104939 | None:intergenic |
TTCGTCGATCTTATCCTCGA+CGG | 0.549709 | 1:-96104100 | None:intergenic |
TGGTATTAGCACATTTGCAA+AGG | 0.556981 | 1:-96105579 | None:intergenic |
CCGCGAAAATTGGCCCTGCA+AGG | 0.557879 | 1:+96104320 | MsG0180005781.01.T01:CDS |
TACCAAAGTGGATGATTATG+TGG | 0.558275 | 1:+96104962 | MsG0180005781.01.T01:CDS |
GAAATTGTGCGAACCTTGCA+GGG | 0.562815 | 1:-96104333 | None:intergenic |
GTCATCGTCGAGACGTTCAA+GGG | 0.565214 | 1:-96104133 | None:intergenic |
TCGGATAATCCAAACAAGAC+TGG | 0.569214 | 1:-96105476 | None:intergenic |
GAGAAGAAGTCTTTCTCTGA+CGG | 0.577836 | 1:-96104258 | None:intergenic |
AATCATCAATACACCGTGCA+AGG | 0.579819 | 1:+96105207 | MsG0180005781.01.T01:CDS |
CGTTGGATCTCCCTCGGACA+CGG | 0.582223 | 1:+96104219 | MsG0180005781.01.T01:CDS |
TACCACATAATCATCCACTT+TGG | 0.582640 | 1:-96104964 | None:intergenic |
CGTAGCCGTTGGATCTCCCT+CGG | 0.582964 | 1:+96104213 | MsG0180005781.01.T01:CDS |
TGGCGGAGAAGCGTAGCCGT+TGG | 0.601854 | 1:+96104202 | MsG0180005781.01.T01:CDS |
CAATCTTTCTTCCAAAACCT+CGG | 0.602383 | 1:-96105153 | None:intergenic |
AATTTAGAAAGACACACAAA+CGG | 0.604177 | 1:-96105381 | None:intergenic |
ACGATCACTTGCTTTAACGA+CGG | 0.607682 | 1:-96104280 | None:intergenic |
GGTGTAATCTCCGTGTCCGA+GGG | 0.608291 | 1:-96104229 | None:intergenic |
TACAAGTTACTCAGAATCTG+AGG | 0.610014 | 1:-96105279 | None:intergenic |
GAACTCAAAGTGCAGAGCGA+GGG | 0.616104 | 1:+96103993 | None:intergenic |
GAGCTCTCGTCTTTCCAGGA+GGG | 0.622232 | 1:-96105328 | None:intergenic |
TGAGCTCTCGTCTTTCCAGG+AGG | 0.628602 | 1:-96105329 | None:intergenic |
GACGGTGGCTCAAGCCGTCG+AGG | 0.631972 | 1:+96104086 | MsG0180005781.01.T01:CDS |
CGTGTCCGAGGGAGATCCAA+CGG | 0.633581 | 1:-96104218 | None:intergenic |
TGAACTCAAAGTGCAGAGCG+AGG | 0.639978 | 1:+96103992 | None:intergenic |
AATACACCGTGCAAGGTCCG+GGG | 0.655774 | 1:+96105214 | MsG0180005781.01.T01:CDS |
GATCGAGAATCAAGTACTGA+CGG | 0.657827 | 1:+96104068 | MsG0180005781.01.T01:CDS |
TCTCATAAAGAATACCAAAG+TGG | 0.658073 | 1:+96104950 | MsG0180005781.01.T01:CDS |
TTGAAGCCCTAAGAGAAAGG+AGG | 0.672465 | 1:+96104160 | MsG0180005781.01.T01:CDS |
TACTGATGACTTTAGCACCG+AGG | 0.705317 | 1:+96105136 | MsG0180005781.01.T01:CDS |
GCAACAAATGAAGAAAATGG+CGG | 0.709368 | 1:+96104185 | MsG0180005781.01.T01:CDS |
AAGTGTTCGGCAGAGCACAA+CGG | 0.717985 | 1:+96105250 | MsG0180005781.01.T01:CDS |
GGACAAAGGAAAGATCCAAG+AGG | 0.724397 | 1:+96104044 | MsG0180005781.01.T01:CDS |
CGAGAATCAAGTACTGACGG+TGG | 0.724611 | 1:+96104071 | MsG0180005781.01.T01:CDS |
AAACTTACAAGACACACGAG+TGG | 0.733578 | 1:-96105416 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GAACTTTATAAAAATATTAT+TGG | + | Chr1:96104585-96104604 | MsG0180005781.01.T01:intron | 10.0% |
!!! | AAGAATTTTAATTTAAACGT+AGG | + | Chr1:96104563-96104582 | MsG0180005781.01.T01:intron | 15.0% |
!! | ACATGTGATTACATAATTAT+CGG | + | Chr1:96104450-96104469 | MsG0180005781.01.T01:intron | 20.0% |
!! | TAGAATTATCTGTTTATCAT+TGG | + | Chr1:96104680-96104699 | MsG0180005781.01.T01:intron | 20.0% |
!!! | CTTTCTAAATTTAGTTTTGT+TGG | + | Chr1:96105393-96105412 | MsG0180005781.01.T01:three_prime_UTR | 20.0% |
!!! | TGTCTAAATTTTGTTTTTGT+TGG | + | Chr1:96105358-96105377 | MsG0180005781.01.T01:three_prime_UTR | 20.0% |
! | AATTATCTGTTTATCATTGG+AGG | + | Chr1:96104683-96104702 | MsG0180005781.01.T01:intron | 25.0% |
! | AATTATGTAATCACATGTGT+AGG | - | Chr1:96104448-96104467 | None:intergenic | 25.0% |
! | AATTTAGAAAGACACACAAA+CGG | - | Chr1:96105384-96105403 | None:intergenic | 25.0% |
! | ATATAAAAACTGTAAGTCTG+CGG | - | Chr1:96104754-96104773 | None:intergenic | 25.0% |
! | ATTATCTGTTTATCATTGGA+GGG | + | Chr1:96104684-96104703 | MsG0180005781.01.T01:intron | 25.0% |
! | CTTATAGTGATTAGAATCAT+TGG | - | Chr1:96105510-96105529 | None:intergenic | 25.0% |
! | TACTAACATCAAGATGATAA+TGG | + | Chr1:96105078-96105097 | MsG0180005781.01.T01:intron | 25.0% |
! | TACTGCATAAAAGTAATTCT+TGG | - | Chr1:96105602-96105621 | None:intergenic | 25.0% |
! | TATTGACATGAATGCTATAT+TGG | + | Chr1:96105025-96105044 | MsG0180005781.01.T01:intron | 25.0% |
!!! | ATGATAATGGTATGTGTTTT+AGG | + | Chr1:96105091-96105110 | MsG0180005781.01.T01:intron | 25.0% |
!!! | TAATACTAAGAGTTTTGAGA+TGG | + | Chr1:96105530-96105549 | MsG0180005781.01.T01:three_prime_UTR | 25.0% |
AGAATCATTGGTACAATCAT+CGG | - | Chr1:96105498-96105517 | None:intergenic | 30.0% | |
CGGAATTCAAATTCAAATTG+TGG | - | Chr1:96104734-96104753 | None:intergenic | 30.0% | |
GATTATGTGGTATGTCTTAA+AGG | + | Chr1:96104975-96104994 | MsG0180005781.01.T01:intron | 30.0% | |
TCTCATAAAGAATACCAAAG+TGG | + | Chr1:96104950-96104969 | MsG0180005781.01.T01:CDS | 30.0% | |
TGATTACATAATTATCGGTG+TGG | + | Chr1:96104455-96104474 | MsG0180005781.01.T01:intron | 30.0% | |
TTCTTTATGAGAGCAATAGT+AGG | - | Chr1:96104942-96104961 | None:intergenic | 30.0% | |
! | GGACAAGCATTTAAGTATTT+TGG | + | Chr1:96104830-96104849 | MsG0180005781.01.T01:CDS | 30.0% |
! | TAAAGCTCAAGTCATCTTTT+TGG | + | Chr1:96105178-96105197 | MsG0180005781.01.T01:CDS | 30.0% |
! | TATTTTCTTTCGCTGAAATG+AGG | + | Chr1:96104771-96104790 | MsG0180005781.01.T01:intron | 30.0% |
!! | ATAATGGTATGTGTTTTAGG+TGG | + | Chr1:96105094-96105113 | MsG0180005781.01.T01:intron | 30.0% |
!! | TAATGGTATGTGTTTTAGGT+GGG | + | Chr1:96105095-96105114 | MsG0180005781.01.T01:intron | 30.0% |
AACATTTGCTTCATGACTAC+AGG | - | Chr1:96105633-96105652 | None:intergenic | 35.0% | |
ACATGAATGCTATATTGGAC+AGG | + | Chr1:96105030-96105049 | MsG0180005781.01.T01:intron | 35.0% | |
AGGAGTGAAAAAATGGACAA+AGG | + | Chr1:96104030-96104049 | MsG0180005781.01.T01:exon | 35.0% | |
ATATTATTGGCAGTGCATAC+TGG | + | Chr1:96104598-96104617 | MsG0180005781.01.T01:intron | 35.0% | |
CAATCTTTCTTCCAAAACCT+CGG | - | Chr1:96105156-96105175 | None:intergenic | 35.0% | |
CATGAATGCTATATTGGACA+GGG | + | Chr1:96105031-96105050 | MsG0180005781.01.T01:intron | 35.0% | |
GCAAAGGACAAACACATTAA+AGG | - | Chr1:96105566-96105585 | None:intergenic | 35.0% | |
GCAACAAATGAAGAAAATGG+CGG | + | Chr1:96104185-96104204 | MsG0180005781.01.T01:CDS | 35.0% | |
GCTGCAACAAATGAAGAAAA+TGG | + | Chr1:96104182-96104201 | MsG0180005781.01.T01:CDS | 35.0% | |
TACAAGTTACTCAGAATCTG+AGG | - | Chr1:96105282-96105301 | None:intergenic | 35.0% | |
TACCAAAGTGGATGATTATG+TGG | + | Chr1:96104962-96104981 | MsG0180005781.01.T01:CDS | 35.0% | |
TACCACATAATCATCCACTT+TGG | - | Chr1:96104967-96104986 | None:intergenic | 35.0% | |
TCGATCTAGGAGTGAAAAAA+TGG | + | Chr1:96104023-96104042 | MsG0180005781.01.T01:exon | 35.0% | |
TGGTATTAGCACATTTGCAA+AGG | - | Chr1:96105582-96105601 | None:intergenic | 35.0% | |
TTGAGCTTCTCAGCTAAAAA+TGG | - | Chr1:96104906-96104925 | None:intergenic | 35.0% | |
! | TGCATTCAGTTTGATTAGCT+TGG | + | Chr1:96104535-96104554 | MsG0180005781.01.T01:intron | 35.0% |
!! | TATCAATTGCCAGTCTTGTT+TGG | + | Chr1:96105467-96105486 | MsG0180005781.01.T01:three_prime_UTR | 35.0% |
AAACTTACAAGACACACGAG+TGG | - | Chr1:96105419-96105438 | None:intergenic | 40.0% | |
AATCATCAATACACCGTGCA+AGG | + | Chr1:96105207-96105226 | MsG0180005781.01.T01:CDS | 40.0% | |
ACGATCACTTGCTTTAACGA+CGG | - | Chr1:96104283-96104302 | None:intergenic | 40.0% | |
ATCTTGAAGCCCTAAGAGAA+AGG | + | Chr1:96104157-96104176 | MsG0180005781.01.T01:CDS | 40.0% | |
GAGAAGAAGTCTTTCTCTGA+CGG | - | Chr1:96104261-96104280 | None:intergenic | 40.0% | |
GTAATCACATGTGTAGGTGT+CGG | - | Chr1:96104442-96104461 | None:intergenic | 40.0% | |
GTCATTTCTTCCGCGAAAAT+TGG | + | Chr1:96104310-96104329 | MsG0180005781.01.T01:CDS | 40.0% | |
TCGGATAATCCAAACAAGAC+TGG | - | Chr1:96105479-96105498 | None:intergenic | 40.0% | |
! | AGCTCAAGTCATCTTTTTGG+AGG | + | Chr1:96105181-96105200 | MsG0180005781.01.T01:CDS | 40.0% |
! | GCTCAAGTCATCTTTTTGGA+GGG | + | Chr1:96105182-96105201 | MsG0180005781.01.T01:CDS | 40.0% |
!! | CGCAAACCAAAAGAAGTGTT+CGG | + | Chr1:96105237-96105256 | MsG0180005781.01.T01:CDS | 40.0% |
!! | GATCGAGAATCAAGTACTGA+CGG | + | Chr1:96104068-96104087 | MsG0180005781.01.T01:CDS | 40.0% |
!! | TAGGTGGGTTTTGATGAACT+TGG | + | Chr1:96105110-96105129 | MsG0180005781.01.T01:intron | 40.0% |
!! | TTTTATTTACGTTGCCCTCC+TGG | + | Chr1:96105314-96105333 | MsG0180005781.01.T01:three_prime_UTR | 40.0% |
!!! | CGAGGTTTTGGAAGAAAGAT+TGG | + | Chr1:96105154-96105173 | MsG0180005781.01.T01:CDS | 40.0% |
CACAGTTCATTCACAGGTTG+TGG | + | Chr1:96104809-96104828 | MsG0180005781.01.T01:intron | 45.0% | |
CGAAGCAGCATATTGAGACT+CGG | + | Chr1:96104853-96104872 | MsG0180005781.01.T01:CDS | 45.0% | |
CTTGATTCTCGATCACCTCT+TGG | - | Chr1:96104062-96104081 | None:intergenic | 45.0% | |
GAAATTGTGCGAACCTTGCA+GGG | - | Chr1:96104336-96104355 | None:intergenic | 45.0% | |
GGACAAAGGAAAGATCCAAG+AGG | + | Chr1:96104044-96104063 | MsG0180005781.01.T01:CDS | 45.0% | |
GTCTTTCTCTGACGGAATCT+CGG | - | Chr1:96104253-96104272 | None:intergenic | 45.0% | |
TACTGATGACTTTAGCACCG+AGG | + | Chr1:96105136-96105155 | MsG0180005781.01.T01:CDS | 45.0% | |
TGTGCTCACAGTTCATTCAC+AGG | + | Chr1:96104803-96104822 | MsG0180005781.01.T01:intron | 45.0% | |
TTCGTCGATCTTATCCTCGA+CGG | - | Chr1:96104103-96104122 | None:intergenic | 45.0% | |
TTGAAGCCCTAAGAGAAAGG+AGG | + | Chr1:96104160-96104179 | MsG0180005781.01.T01:CDS | 45.0% | |
TTGCAGCCTCCTTTCTCTTA+GGG | - | Chr1:96104169-96104188 | None:intergenic | 45.0% | |
!! | GTGGGTTTTGATGAACTTGG+TGG | + | Chr1:96105113-96105132 | MsG0180005781.01.T01:CDS | 45.0% |
!! | TGACTTTAGCACCGAGGTTT+TGG | + | Chr1:96105142-96105161 | MsG0180005781.01.T01:CDS | 45.0% |
AAGTGTTCGGCAGAGCACAA+CGG | + | Chr1:96105250-96105269 | MsG0180005781.01.T01:CDS | 50.0% | |
ATCTGAGCTCTCGTCTTTCC+AGG | - | Chr1:96105335-96105354 | None:intergenic | 50.0% | |
CGAAATTGTGCGAACCTTGC+AGG | - | Chr1:96104337-96104356 | None:intergenic | 50.0% | |
CGGTGTGGATGTGTAGTGTT+AGG | + | Chr1:96104470-96104489 | MsG0180005781.01.T01:intron | 50.0% | |
GTCATCGTCGAGACGTTCAA+GGG | - | Chr1:96104136-96104155 | None:intergenic | 50.0% | |
GTTGCAGCCTCCTTTCTCTT+AGG | - | Chr1:96104170-96104189 | None:intergenic | 50.0% | |
TCAATACACCGTGCAAGGTC+CGG | + | Chr1:96105212-96105231 | MsG0180005781.01.T01:CDS | 50.0% | |
! | GCTCTGCCGAACACTTCTTT+TGG | - | Chr1:96105246-96105265 | None:intergenic | 50.0% |
!! | CGAGAATCAAGTACTGACGG+TGG | + | Chr1:96104071-96104090 | MsG0180005781.01.T01:CDS | 50.0% |
!!! | ACTTCTTTTGGTTTGCGCCC+CGG | - | Chr1:96105234-96105253 | None:intergenic | 50.0% |
AATACACCGTGCAAGGTCCG+GGG | + | Chr1:96105214-96105233 | MsG0180005781.01.T01:CDS | 55.0% | |
CAATACACCGTGCAAGGTCC+GGG | + | Chr1:96105213-96105232 | MsG0180005781.01.T01:CDS | 55.0% | |
CGAGGGAGAGAGATCGATCT+AGG | + | Chr1:96104010-96104029 | MsG0180005781.01.T01:five_prime_UTR | 55.0% | |
CGTCATCGTCGAGACGTTCA+AGG | - | Chr1:96104137-96104156 | None:intergenic | 55.0% | |
GAGCTCTCGTCTTTCCAGGA+GGG | - | Chr1:96105331-96105350 | None:intergenic | 55.0% | |
GGTGTAATCTCCGTGTCCGA+GGG | - | Chr1:96104232-96104251 | None:intergenic | 55.0% | |
TGAGCTCTCGTCTTTCCAGG+AGG | - | Chr1:96105332-96105351 | None:intergenic | 55.0% | |
! | CCTTGCAGGGCCAATTTTCG+CGG | - | Chr1:96104323-96104342 | None:intergenic | 55.0% |
CCGCGAAAATTGGCCCTGCA+AGG | + | Chr1:96104320-96104339 | MsG0180005781.01.T01:CDS | 60.0% | |
CGGTGTAATCTCCGTGTCCG+AGG | - | Chr1:96104233-96104252 | None:intergenic | 60.0% | |
CGTAGCCGTTGGATCTCCCT+CGG | + | Chr1:96104213-96104232 | MsG0180005781.01.T01:CDS | 60.0% | |
CGTGTCCGAGGGAGATCCAA+CGG | - | Chr1:96104221-96104240 | None:intergenic | 60.0% | |
CGTTGGATCTCCCTCGGACA+CGG | + | Chr1:96104219-96104238 | MsG0180005781.01.T01:CDS | 60.0% | |
TTTGCGCCCCGGACCTTGCA+CGG | - | Chr1:96105223-96105242 | None:intergenic | 65.0% | |
! | TGGCGGAGAAGCGTAGCCGT+TGG | + | Chr1:96104202-96104221 | MsG0180005781.01.T01:CDS | 65.0% |
GACGGTGGCTCAAGCCGTCG+AGG | + | Chr1:96104086-96104105 | MsG0180005781.01.T01:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 96104001 | 96105686 | 96104001 | ID=MsG0180005781.01;Name=MsG0180005781.01 |
Chr1 | mRNA | 96104001 | 96105686 | 96104001 | ID=MsG0180005781.01.T01;Parent=MsG0180005781.01;Name=MsG0180005781.01.T01;_AED=0.49;_eAED=0.49;_QI=41|1|1|1|1|1|3|391|213 |
Chr1 | exon | 96104001 | 96104341 | 96104001 | ID=MsG0180005781.01.T01:exon:10540;Parent=MsG0180005781.01.T01 |
Chr1 | exon | 96104825 | 96104983 | 96104825 | ID=MsG0180005781.01.T01:exon:10541;Parent=MsG0180005781.01.T01 |
Chr1 | exon | 96105113 | 96105686 | 96105113 | ID=MsG0180005781.01.T01:exon:10542;Parent=MsG0180005781.01.T01 |
Chr1 | five_prime_UTR | 96104001 | 96104041 | 96104001 | ID=MsG0180005781.01.T01:five_prime_utr;Parent=MsG0180005781.01.T01 |
Chr1 | CDS | 96104042 | 96104341 | 96104042 | ID=MsG0180005781.01.T01:cds;Parent=MsG0180005781.01.T01 |
Chr1 | CDS | 96104825 | 96104983 | 96104825 | ID=MsG0180005781.01.T01:cds;Parent=MsG0180005781.01.T01 |
Chr1 | CDS | 96105113 | 96105295 | 96105113 | ID=MsG0180005781.01.T01:cds;Parent=MsG0180005781.01.T01 |
Chr1 | three_prime_UTR | 96105296 | 96105686 | 96105296 | ID=MsG0180005781.01.T01:three_prime_utr;Parent=MsG0180005781.01.T01 |
Gene Sequence |
Protein sequence |