AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006078.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006078.01.T01 MTR_1g113830 97.051 373 10 1 6 377 282 654 0.0 739
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006078.01.T01 AT5G40820 37.569 362 213 5 6 366 292 641 1.14e-58 206
MsG0180006078.01.T01 AT5G40820 37.845 362 211 5 6 366 292 640 1.19e-58 206
MsG0180006078.01.T01 AT5G40820 37.845 362 211 5 6 366 292 640 1.19e-58 206
MsG0180006078.01.T01 AT5G40820 37.845 362 211 5 6 366 292 640 1.19e-58 206

Find 71 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGATTTAGTCGGTGTATT+TGG 0.206411 1:-99813297 MsG0180006078.01.T01:CDS
AGATGCTTGTATGGCTTTCT+TGG 0.301363 1:-99812556 MsG0180006078.01.T01:CDS
GGTAATTCTCATTCTGTAAT+GGG 0.319710 1:+99811792 None:intergenic
ATACGCTGTGAATTCCTTCT+AGG 0.322006 1:+99812408 None:intergenic
TATCCTGAATGGACCTCTTT+TGG 0.326753 1:+99812864 None:intergenic
AAAGAGGTCCATTCAGGATA+TGG 0.335891 1:-99812861 MsG0180006078.01.T01:CDS
CAATGCTAACCTTAAGTTCC+TGG 0.343888 1:+99813253 None:intergenic
TTTGCATTCCACCTCAATAC+TGG 0.352123 1:+99812784 None:intergenic
CTGCTGGACCTTGTTCTTTG+AGG 0.357567 1:-99812667 MsG0180006078.01.T01:CDS
TCGTTAAATGCTCCCGCTGC+TGG 0.361134 1:-99812683 MsG0180006078.01.T01:CDS
CTACATTCTTAGTGTTTCCT+AGG 0.372082 1:+99812933 None:intergenic
TCTTTCAGCAGATGCTTGTA+TGG 0.374859 1:-99812565 MsG0180006078.01.T01:CDS
AACTAAAAGCCAGGAACTTA+AGG 0.376364 1:-99813262 MsG0180006078.01.T01:intron
TGGTAATTCTCATTCTGTAA+TGG 0.388227 1:+99811791 None:intergenic
TGGCCAAAAGAGGTCCATTC+AGG 0.388661 1:-99812867 MsG0180006078.01.T01:CDS
CTTCAAGTATTATCGAAGTT+AGG 0.389860 1:-99811674 MsG0180006078.01.T01:CDS
TTAGAAGAGATTTATTCATA+TGG 0.390948 1:+99812717 None:intergenic
ATCAAAGGTAAACATGGTTC+CGG 0.398592 1:+99813010 None:intergenic
CAAGTAGCTGTATCTACTCT+TGG 0.409203 1:-99812977 MsG0180006078.01.T01:CDS
ATGGCTTATGATTCATCGTT+GGG 0.434089 1:-99813378 MsG0180006078.01.T01:CDS
AGTGCAGATAAAGCAATATC+TGG 0.437276 1:+99812644 None:intergenic
AATATAGTTGTATAGTTACT+TGG 0.442596 1:-99812763 MsG0180006078.01.T01:CDS
GATATTTCCACCTACCTAGA+AGG 0.445740 1:-99812422 MsG0180006078.01.T01:CDS
TCAATCAGGTGCCTCTTTCA+AGG 0.447106 1:-99811822 MsG0180006078.01.T01:intron
GTTAATTTGACGATATCTAC+TGG 0.451547 1:+99813324 None:intergenic
GTGATGAAGCTGAAGAAGTC+AGG 0.464370 1:-99811601 MsG0180006078.01.T01:CDS
AAAATTATCCATATCCTGAA+TGG 0.466086 1:+99812853 None:intergenic
ACAGCTTCAGTGCTCAAGCC+TGG 0.468993 1:+99811650 None:intergenic
AGCAATGAGCGTATGAGTCC+AGG 0.469909 1:+99811736 None:intergenic
TACTCCATCCTTTCAAAGAC+AGG 0.490723 1:+99811518 None:intergenic
CATATCTACACTCTGTCATC+CGG 0.496864 1:-99813029 MsG0180006078.01.T01:CDS
ACCTCCTGTCTTTGAAAGGA+TGG 0.497786 1:-99811522 MsG0180006078.01.T01:CDS
GCTTTCTTGGATAGCTGAGC+AGG 0.505028 1:-99812543 MsG0180006078.01.T01:intron
CACTCTATCAAAGGTAAACA+TGG 0.506843 1:+99813004 None:intergenic
CATGGCTTATGATTCATCGT+TGG 0.517551 1:-99813379 MsG0180006078.01.T01:CDS
AGCTATTTCTATGCCAGTGA+TGG 0.518896 1:-99811570 MsG0180006078.01.T01:CDS
AGTGTAGATATGAGATGCTC+TGG 0.519878 1:+99813040 None:intergenic
CTGATAGACAGATCACTCTC+TGG 0.526465 1:+99812590 None:intergenic
ATCATAAGCCATGTTTCTGC+AGG 0.528452 1:+99813389 None:intergenic
TGGGTTGTTCTCCTTGAAAG+AGG 0.529701 1:+99811811 None:intergenic
AAAGAACAAGGTCCAGCAGC+GGG 0.531757 1:+99812671 None:intergenic
CTCTGGCTTCCATACATGAG+GGG 0.546316 1:+99813057 None:intergenic
CCAGACCACAAAACCATCAC+TGG 0.551457 1:+99811557 None:intergenic
TATCACCTCCTGTCTTTGAA+AGG 0.554818 1:-99811526 MsG0180006078.01.T01:CDS
TGCTCTGGCTTCCATACATG+AGG 0.554893 1:+99813055 None:intergenic
ACAAGTCAATTGAAAGCAAG+AGG 0.555944 1:-99812892 MsG0180006078.01.T01:CDS
GTATTATCGAAGTTAGGTCC+AGG 0.559454 1:-99811668 MsG0180006078.01.T01:CDS
GCAAGAGGCATGGCCAAAAG+AGG 0.563417 1:-99812877 MsG0180006078.01.T01:CDS
AGCTAGAGTGGAGTGTATTG+AGG 0.572216 1:+99813349 None:intergenic
ACTTGAAAGCACTCTATCAA+AGG 0.579267 1:+99812995 None:intergenic
TGTTGCAGATGCCAGTATTG+AGG 0.579551 1:-99812795 MsG0180006078.01.T01:CDS
GTGAATTCCTTCTAGGTAGG+TGG 0.585067 1:+99812415 None:intergenic
GCAATGAGCGTATGAGTCCA+GGG 0.585395 1:+99811737 None:intergenic
TATCTACTGGACAGCTAGAG+TGG 0.594296 1:+99813337 None:intergenic
ATGTCTTTATAGGCGAAACA+AGG 0.596198 1:-99812461 MsG0180006078.01.T01:intron
GCTCTGGCTTCCATACATGA+GGG 0.596519 1:+99813056 None:intergenic
TTAACAGCTACTGATTTAGT+CGG 0.598077 1:-99813306 MsG0180006078.01.T01:CDS
CTATTGATAATCAATTGCCA+TGG 0.598606 1:-99811715 MsG0180006078.01.T01:CDS
GGAGCTCACCTGCAGAAACA+TGG 0.600535 1:-99813397 MsG0180006078.01.T01:CDS
ACTGAGGAGAACTAAAAGCC+AGG 0.607627 1:-99813271 MsG0180006078.01.T01:CDS
TCTGGCTTCCATACATGAGG+GGG 0.615309 1:+99813058 None:intergenic
ATATCTGGCCTCAAAGAACA+AGG 0.620808 1:+99812659 None:intergenic
GCTGTGAATTCCTTCTAGGT+AGG 0.623711 1:+99812412 None:intergenic
TCAATTGAAAGCAAGAGGCA+TGG 0.637998 1:-99812887 MsG0180006078.01.T01:CDS
ACTCTCTGGATACATAGAGA+AGG 0.639734 1:+99812604 None:intergenic
TCCATCCTTTCAAAGACAGG+AGG 0.648023 1:+99811521 None:intergenic
CAAAGAACAAGGTCCAGCAG+CGG 0.656308 1:+99812670 None:intergenic
TCGATAATACTTGAAGAGAG+AGG 0.659530 1:+99811681 None:intergenic
TGCAGATGCCAGTATTGAGG+TGG 0.663329 1:-99812792 MsG0180006078.01.T01:CDS
CTGGCTTCCATACATGAGGG+GGG 0.675671 1:+99813059 None:intergenic
TCGGTGTATTTGGATCACTG+AGG 0.776507 1:-99813287 MsG0180006078.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! GGGGGGGGGGGGGGGGGGGG+GGG - Chr1:99812996-99813015 MsG0180006078.01.T01:CDS 100.0%
!!! ATGTTTCTAGATATAAATAA+CGG - Chr1:99812789-99812808 MsG0180006078.01.T01:CDS 15.0%
!!! TAATTTCTTCATTAGTTTTT+TGG + Chr1:99812100-99812119 None:intergenic 15.0%
!! AATATAGTTGTATAGTTACT+TGG - Chr1:99812153-99812172 MsG0180006078.01.T01:intron 20.0%
!! TACAAGTTTATAGATTTGAA+GGG - Chr1:99811758-99811777 MsG0180006078.01.T01:CDS 20.0%
!! TTAGAAGAGATTTATTCATA+TGG + Chr1:99812202-99812221 None:intergenic 20.0%
!! TTATTAAGCAACCAAATATA+AGG - Chr1:99813027-99813046 MsG0180006078.01.T01:CDS 20.0%
!!! ACTTGTTTTCATTTGATAAA+AGG + Chr1:99812010-99812029 None:intergenic 20.0%
!!! CTTGTTTTCATTTGATAAAA+GGG + Chr1:99812009-99812028 None:intergenic 20.0%
!!! GACTTAAAATTATTCTTTTC+AGG - Chr1:99811794-99811813 MsG0180006078.01.T01:CDS 20.0%
! AAAATTATCCATATCCTGAA+TGG + Chr1:99812066-99812085 None:intergenic 25.0%
! AAGGATTATTATTCTCTCAA+TGG - Chr1:99812686-99812705 MsG0180006078.01.T01:CDS 25.0%
! ACTAAGTTCTATGTCTTTAT+AGG - Chr1:99812445-99812464 MsG0180006078.01.T01:CDS 25.0%
! ATCAGTGAAATCCTTATATT+TGG + Chr1:99813041-99813060 None:intergenic 25.0%
! ATCTATAAACTTGTAGAAAC+TGG + Chr1:99811753-99811772 None:intergenic 25.0%
! CTACAAGTTTATAGATTTGA+AGG - Chr1:99811757-99811776 MsG0180006078.01.T01:CDS 25.0%
!!! GTTCTTGAAGTTTTAGATTT+GGG - Chr1:99813287-99813306 MsG0180006078.01.T01:CDS 25.0%
!!! TGTTCTTGAAGTTTTAGATT+TGG - Chr1:99813286-99813305 MsG0180006078.01.T01:CDS 25.0%
AATTCACAGAATCAGTTAAG+AGG + Chr1:99812563-99812582 None:intergenic 30.0%
CTAGTAGCATTCTAGATTTA+CGG - Chr1:99812922-99812941 MsG0180006078.01.T01:CDS 30.0%
CTTCAAGTATTATCGAAGTT+AGG - Chr1:99813242-99813261 MsG0180006078.01.T01:intron 30.0%
GGTAATTCTCATTCTGTAAT+GGG + Chr1:99813127-99813146 None:intergenic 30.0%
TGGTAATTCTCATTCTGTAA+TGG + Chr1:99813128-99813147 None:intergenic 30.0%
! CTATTGATAATCAATTGCCA+TGG - Chr1:99813201-99813220 MsG0180006078.01.T01:intron 30.0%
! GATATAAATAACGGCATTGA+AGG - Chr1:99812798-99812817 MsG0180006078.01.T01:CDS 30.0%
! GTTAATTTGACGATATCTAC+TGG + Chr1:99811595-99811614 None:intergenic 30.0%
! GTTTAAGCACAAAAAGCATA+AGG + Chr1:99813157-99813176 None:intergenic 30.0%
! GTTTTCATGCTAAGGAATAA+AGG + Chr1:99812600-99812619 None:intergenic 30.0%
! TATTCTCTCAATGGATTCTT+TGG - Chr1:99812695-99812714 MsG0180006078.01.T01:CDS 30.0%
! TGCTTTTGCAAAGTAAGTTT+TGG - Chr1:99812531-99812550 MsG0180006078.01.T01:intron 30.0%
! TTGATGGCAAGTAGATTATA+AGG - Chr1:99812667-99812686 MsG0180006078.01.T01:CDS 30.0%
! TTGTGTCTGATTTTCTTTGA+TGG - Chr1:99812651-99812670 MsG0180006078.01.T01:CDS 30.0%
!! AGACATAGAACTTAGTTTGT+TGG + Chr1:99812441-99812460 None:intergenic 30.0%
!! TCAATGGATTCTTTGGATTT+TGG - Chr1:99812702-99812721 MsG0180006078.01.T01:CDS 30.0%
!! TTAACAGCTACTGATTTAGT+CGG - Chr1:99811610-99811629 MsG0180006078.01.T01:CDS 30.0%
AAAACACCATACTGCTTTCT+AGG - Chr1:99812615-99812634 MsG0180006078.01.T01:CDS 35.0%
AACTAAAAGCCAGGAACTTA+AGG - Chr1:99811654-99811673 MsG0180006078.01.T01:CDS 35.0%
ACAAGTCAATTGAAAGCAAG+AGG - Chr1:99812024-99812043 MsG0180006078.01.T01:intron 35.0%
ACAGAATCAGTTAAGAGGTA+AGG + Chr1:99812558-99812577 None:intergenic 35.0%
AGTGCAGATAAAGCAATATC+TGG + Chr1:99812275-99812294 None:intergenic 35.0%
ATCAAAGGTAAACATGGTTC+CGG + Chr1:99811909-99811928 None:intergenic 35.0%
ATGGCTTATGATTCATCGTT+GGG - Chr1:99811538-99811557 MsG0180006078.01.T01:CDS 35.0%
ATGTCTTTATAGGCGAAACA+AGG - Chr1:99812455-99812474 MsG0180006078.01.T01:intron 35.0%
CACTCTATCAAAGGTAAACA+TGG + Chr1:99811915-99811934 None:intergenic 35.0%
CTACATTCTTAGTGTTTCCT+AGG + Chr1:99811986-99812005 None:intergenic 35.0%
TAATCACCTAGAAAGCAGTA+TGG + Chr1:99812624-99812643 None:intergenic 35.0%
TCGATAATACTTGAAGAGAG+AGG + Chr1:99813238-99813257 None:intergenic 35.0%
TTGAGAGAAGTCACAAGTAA+AGG + Chr1:99813078-99813097 None:intergenic 35.0%
TTTGAAGGGAATTGATCAAG+AGG - Chr1:99811772-99811791 MsG0180006078.01.T01:CDS 35.0%
! ACTGATTTAGTCGGTGTATT+TGG - Chr1:99811619-99811638 MsG0180006078.01.T01:CDS 35.0%
! AGTATGGTGTTTTCATGCTA+AGG + Chr1:99812608-99812627 None:intergenic 35.0%
! CAAAAAGCATAAGGTCTACA+TGG + Chr1:99813148-99813167 None:intergenic 35.0%
! TTTTTGTGCTTAAACTTCCC+TGG - Chr1:99813162-99813181 MsG0180006078.01.T01:intron 35.0%
!! ACTTGAAAGCACTCTATCAA+AGG + Chr1:99811924-99811943 None:intergenic 35.0%
!! CTTTGGATTTTGGTAGACTT+TGG - Chr1:99812712-99812731 MsG0180006078.01.T01:CDS 35.0%
!!! GAGAGGCATTTAATTTTCCA+TGG + Chr1:99813221-99813240 None:intergenic 35.0%
AAAGAGGTCCATTCAGGATA+TGG - Chr1:99812055-99812074 MsG0180006078.01.T01:intron 40.0%
ACTCTCTGGATACATAGAGA+AGG + Chr1:99812315-99812334 None:intergenic 40.0%
ACTTGTGACTTCTCTCAATC+AGG - Chr1:99813080-99813099 MsG0180006078.01.T01:CDS 40.0%
AGAACCCTTAAAAAGAGCCA+TGG + Chr1:99812888-99812907 None:intergenic 40.0%
AGATGCTTGTATGGCTTTCT+TGG - Chr1:99812360-99812379 MsG0180006078.01.T01:intron 40.0%
AGTGTAGATATGAGATGCTC+TGG + Chr1:99811879-99811898 None:intergenic 40.0%
ATACGCTGTGAATTCCTTCT+AGG + Chr1:99812511-99812530 None:intergenic 40.0%
ATATCTGGCCTCAAAGAACA+AGG + Chr1:99812260-99812279 None:intergenic 40.0%
CAAGTAGCTGTATCTACTCT+TGG - Chr1:99811939-99811958 MsG0180006078.01.T01:intron 40.0%
CAATGCTAACCTTAAGTTCC+TGG + Chr1:99811666-99811685 None:intergenic 40.0%
CATATCTACACTCTGTCATC+CGG - Chr1:99811887-99811906 MsG0180006078.01.T01:intron 40.0%
CATGGCTTATGATTCATCGT+TGG - Chr1:99811537-99811556 MsG0180006078.01.T01:CDS 40.0%
GAACCCTTAAAAAGAGCCAT+GGG + Chr1:99812887-99812906 None:intergenic 40.0%
GATATTTCCACCTACCTAGA+AGG - Chr1:99812494-99812513 MsG0180006078.01.T01:intron 40.0%
GTATTATCGAAGTTAGGTCC+AGG - Chr1:99813248-99813267 MsG0180006078.01.T01:intron 40.0%
TACTCCATCCTTTCAAAGAC+AGG + Chr1:99813401-99813420 None:intergenic 40.0%
TATCACCTCCTGTCTTTGAA+AGG - Chr1:99813390-99813409 MsG0180006078.01.T01:CDS 40.0%
TCAATTGAAAGCAAGAGGCA+TGG - Chr1:99812029-99812048 MsG0180006078.01.T01:intron 40.0%
TCTTTCAGCAGATGCTTGTA+TGG - Chr1:99812351-99812370 MsG0180006078.01.T01:intron 40.0%
TTTGCATTCCACCTCAATAC+TGG + Chr1:99812135-99812154 None:intergenic 40.0%
! ATCATAAGCCATGTTTCTGC+AGG + Chr1:99811530-99811549 None:intergenic 40.0%
! CATCTTTTTGTGGGAATCCT+AGG - Chr1:99811966-99811985 MsG0180006078.01.T01:intron 40.0%
! TATCCTGAATGGACCTCTTT+TGG + Chr1:99812055-99812074 None:intergenic 40.0%
!! AGCTATTTCTATGCCAGTGA+TGG - Chr1:99813346-99813365 MsG0180006078.01.T01:CDS 40.0%
!! CTTGGTGCACATCTTTTTGT+GGG - Chr1:99811957-99811976 MsG0180006078.01.T01:intron 40.0%
!! TCTTGGTGCACATCTTTTTG+TGG - Chr1:99811956-99811975 MsG0180006078.01.T01:intron 40.0%
AAAAGAGCCATGGGTGGAAA+TGG + Chr1:99812878-99812897 None:intergenic 45.0%
AAGTCTACCATTTCCACCCA+TGG - Chr1:99812868-99812887 MsG0180006078.01.T01:CDS 45.0%
ACCCTAGCTTAATGTGCACA+AGG + Chr1:99812964-99812983 None:intergenic 45.0%
ACTGAGGAGAACTAAAAGCC+AGG - Chr1:99811645-99811664 MsG0180006078.01.T01:CDS 45.0%
AGCTAGAGTGGAGTGTATTG+AGG + Chr1:99811570-99811589 None:intergenic 45.0%
ATGGGTGGAAATGGTAGACT+TGG + Chr1:99812869-99812888 None:intergenic 45.0%
CCCTAGCTTAATGTGCACAA+GGG + Chr1:99812963-99812982 None:intergenic 45.0%
CCCTTGTGCACATTAAGCTA+GGG - Chr1:99812960-99812979 MsG0180006078.01.T01:CDS 45.0%
CTGATAGACAGATCACTCTC+TGG + Chr1:99812329-99812348 None:intergenic 45.0%
GCTGTGAATTCCTTCTAGGT+AGG + Chr1:99812507-99812526 None:intergenic 45.0%
GTGAATTCCTTCTAGGTAGG+TGG + Chr1:99812504-99812523 None:intergenic 45.0%
GTGATGAAGCTGAAGAAGTC+AGG - Chr1:99813315-99813334 MsG0180006078.01.T01:CDS 45.0%
TATCTACTGGACAGCTAGAG+TGG + Chr1:99811582-99811601 None:intergenic 45.0%
TCAATCAGGTGCCTCTTTCA+AGG - Chr1:99813094-99813113 MsG0180006078.01.T01:CDS 45.0%
TCCATCCTTTCAAAGACAGG+AGG + Chr1:99813398-99813417 None:intergenic 45.0%
TCGGTGTATTTGGATCACTG+AGG - Chr1:99811629-99811648 MsG0180006078.01.T01:CDS 45.0%
TGGGTTGTTCTCCTTGAAAG+AGG + Chr1:99813108-99813127 None:intergenic 45.0%
TGTTGCAGATGCCAGTATTG+AGG - Chr1:99812121-99812140 MsG0180006078.01.T01:intron 45.0%
! ACCTCCTGTCTTTGAAAGGA+TGG - Chr1:99813394-99813413 MsG0180006078.01.T01:CDS 45.0%
! CCACCCATGGCTCTTTTTAA+GGG - Chr1:99812881-99812900 MsG0180006078.01.T01:CDS 45.0%
! TCCACCCATGGCTCTTTTTA+AGG - Chr1:99812880-99812899 MsG0180006078.01.T01:CDS 45.0%
!! AGCTAGGGTGTTGTTTCTTC+TGG - Chr1:99812975-99812994 MsG0180006078.01.T01:CDS 45.0%
!! CTAGGGTGTTGTTTCTTCTG+GGG - Chr1:99812977-99812996 MsG0180006078.01.T01:CDS 45.0%
!! CTATGCCAGTGATGGTTTTG+TGG - Chr1:99813354-99813373 MsG0180006078.01.T01:CDS 45.0%
!! GCTAGGGTGTTGTTTCTTCT+GGG - Chr1:99812976-99812995 MsG0180006078.01.T01:CDS 45.0%
!! TAGGGTGTTGTTTCTTCTGG+GGG - Chr1:99812978-99812997 MsG0180006078.01.T01:CDS 45.0%
!! AAATAAACAAATTATATAAT+AGG + Chr1:99812417-99812436 None:intergenic 5.0%
AAAGAACAAGGTCCAGCAGC+GGG + Chr1:99812248-99812267 None:intergenic 50.0%
AAGTTTGCCCCCCTCATGTA+TGG - Chr1:99811850-99811869 MsG0180006078.01.T01:intron 50.0%
AGCAATGAGCGTATGAGTCC+AGG + Chr1:99813183-99813202 None:intergenic 50.0%
CAAAGAACAAGGTCCAGCAG+CGG + Chr1:99812249-99812268 None:intergenic 50.0%
CCAGACCACAAAACCATCAC+TGG + Chr1:99813362-99813381 None:intergenic 50.0%
CCCTTAAAAAGAGCCATGGG+TGG + Chr1:99812884-99812903 None:intergenic 50.0%
CTGCTGGACCTTGTTCTTTG+AGG - Chr1:99812249-99812268 MsG0180006078.01.T01:intron 50.0%
GATAGCTGAGCAGGTAGGAA+CGG - Chr1:99812382-99812401 MsG0180006078.01.T01:intron 50.0%
GCAATGAGCGTATGAGTCCA+GGG + Chr1:99813182-99813201 None:intergenic 50.0%
GCCCTTGTGCACATTAAGCT+AGG - Chr1:99812959-99812978 MsG0180006078.01.T01:CDS 50.0%
GCTTTCTTGGATAGCTGAGC+AGG - Chr1:99812373-99812392 MsG0180006078.01.T01:intron 50.0%
TCTTGGATAGCTGAGCAGGT+AGG - Chr1:99812377-99812396 MsG0180006078.01.T01:intron 50.0%
TGGCCAAAAGAGGTCCATTC+AGG - Chr1:99812049-99812068 MsG0180006078.01.T01:intron 50.0%
! AATGTGCACAAGGGCACAAG+AGG + Chr1:99812954-99812973 None:intergenic 50.0%
! CTCTGGCTTCCATACATGAG+GGG + Chr1:99811862-99811881 None:intergenic 50.0%
! GCTCTGGCTTCCATACATGA+GGG + Chr1:99811863-99811882 None:intergenic 50.0%
! TCTGGCTTCCATACATGAGG+GGG + Chr1:99811861-99811880 None:intergenic 50.0%
! TGCAGATGCCAGTATTGAGG+TGG - Chr1:99812124-99812143 MsG0180006078.01.T01:intron 50.0%
! TGCTCTGGCTTCCATACATG+AGG + Chr1:99811864-99811883 None:intergenic 50.0%
!! AGGGTGTTGTTTCTTCTGGG+GGG - Chr1:99812979-99812998 MsG0180006078.01.T01:CDS 50.0%
!!! CCAGTGATGGTTTTGTGGTC+TGG - Chr1:99813359-99813378 MsG0180006078.01.T01:CDS 50.0%
ACAGCTTCAGTGCTCAAGCC+TGG + Chr1:99813269-99813288 None:intergenic 55.0%
CTGGCTTCCATACATGAGGG+GGG + Chr1:99811860-99811879 None:intergenic 55.0%
GGAGCTCACCTGCAGAAACA+TGG - Chr1:99811519-99811538 MsG0180006078.01.T01:CDS 55.0%
TCGTTAAATGCTCCCGCTGC+TGG - Chr1:99812233-99812252 MsG0180006078.01.T01:intron 55.0%
! GCAAGAGGCATGGCCAAAAG+AGG - Chr1:99812039-99812058 MsG0180006078.01.T01:intron 55.0%
!! GGGTGTTGTTTCTTCTGGGG+GGG - Chr1:99812980-99812999 MsG0180006078.01.T01:CDS 55.0%
!! GGTGTTGTTTCTTCTGGGGG+GGG - Chr1:99812981-99813000 MsG0180006078.01.T01:CDS 55.0%
!! GTGTTGTTTCTTCTGGGGGG+GGG - Chr1:99812982-99813001 MsG0180006078.01.T01:CDS 55.0%
!! TGTTGTTTCTTCTGGGGGGG+GGG - Chr1:99812983-99813002 MsG0180006078.01.T01:CDS 55.0%
! TTGTTTCTTCTGGGGGGGGG+GGG - Chr1:99812985-99813004 MsG0180006078.01.T01:CDS 60.0%
!! GTTGTTTCTTCTGGGGGGGG+GGG - Chr1:99812984-99813003 MsG0180006078.01.T01:CDS 60.0%
! TGTTTCTTCTGGGGGGGGGG+GGG - Chr1:99812986-99813005 MsG0180006078.01.T01:CDS 65.0%
! GTTTCTTCTGGGGGGGGGGG+GGG - Chr1:99812987-99813006 MsG0180006078.01.T01:CDS 70.0%
! TTTCTTCTGGGGGGGGGGGG+GGG - Chr1:99812988-99813007 MsG0180006078.01.T01:CDS 70.0%
! TTCTTCTGGGGGGGGGGGGG+GGG - Chr1:99812989-99813008 MsG0180006078.01.T01:CDS 75.0%
!! TCTTCTGGGGGGGGGGGGGG+GGG - Chr1:99812990-99813009 MsG0180006078.01.T01:CDS 80.0%
!! CTTCTGGGGGGGGGGGGGGG+GGG - Chr1:99812991-99813010 MsG0180006078.01.T01:CDS 85.0%
!! TTCTGGGGGGGGGGGGGGGG+GGG - Chr1:99812992-99813011 MsG0180006078.01.T01:CDS 85.0%
! TCTGGGGGGGGGGGGGGGGG+GGG - Chr1:99812993-99813012 MsG0180006078.01.T01:CDS 90.0%
! CTGGGGGGGGGGGGGGGGGG+GGG - Chr1:99812994-99813013 MsG0180006078.01.T01:CDS 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - Chr1:99812995-99813014 MsG0180006078.01.T01:CDS 95.0%
Chromosome Type Strat End Strand Name
Chr1 gene 99811517 99813421 99811517 ID=MsG0180006078.01;Name=MsG0180006078.01
Chr1 mRNA 99811517 99813421 99811517 ID=MsG0180006078.01.T01;Parent=MsG0180006078.01;Name=MsG0180006078.01.T01;_AED=0.47;_eAED=0.47;_QI=0|1|0.5|1|1|1|4|0|377
Chr1 exon 99813263 99813421 99813263 ID=MsG0180006078.01.T01:exon:24938;Parent=MsG0180006078.01.T01
Chr1 exon 99812544 99813122 99812544 ID=MsG0180006078.01.T01:exon:24937;Parent=MsG0180006078.01.T01
Chr1 exon 99812396 99812471 99812396 ID=MsG0180006078.01.T01:exon:24936;Parent=MsG0180006078.01.T01
Chr1 exon 99811517 99811836 99811517 ID=MsG0180006078.01.T01:exon:24935;Parent=MsG0180006078.01.T01
Chr1 CDS 99813263 99813421 99813263 ID=MsG0180006078.01.T01:cds;Parent=MsG0180006078.01.T01
Chr1 CDS 99812544 99813122 99812544 ID=MsG0180006078.01.T01:cds;Parent=MsG0180006078.01.T01
Chr1 CDS 99812396 99812471 99812396 ID=MsG0180006078.01.T01:cds;Parent=MsG0180006078.01.T01
Chr1 CDS 99811517 99811836 99811517 ID=MsG0180006078.01.T01:cds;Parent=MsG0180006078.01.T01
Gene Sequence

>MsG0180006078.01.T01

ATGGAGCTCACCTGCAGAAACATGGCTTATGATTCATCGTTGGGTGTTTGCCTCAATACACTCCACTCTAGCTGTCCAGTAGATATCGTCAAATTAACAGCTACTGATTTAGTCGGTGTATTTGGATCACTGAGGAGAACTAAAAGCCAGGAACTTAAGGTTGCACTATGCAGTGCTTATGTTAGAATTGCTAAAGTTTGCCCCCCTCATGTATGGAAGCCAGAGCATCTCATATCTACACTCTGTCATCCGGAACCATGTTTACCTTTGATAGAGTGCTTTCAAGTAGCTGTATCTACTCTTGGTGCACATCTTTTTGTGGGAATCCTAGGAAACACTAAGAATGTAGCCCTTTTATCAAATGAAAACAAGTCAATTGAAAGCAAGAGGCATGGCCAAAAGAGGTCCATTCAGGATATGGATAATTTTAAGATCAAACGCCAAAAAACTAATGAAGAAATTAATGTTGCAGATGCCAGTATTGAGGTGGAATGCAAATATAGTTGTATAGTTACTTGGCAAAGAGTAGAAGATTATGCTAACCATATGAATAAATCTCTTCTAACATTTGTTCAATCGTTAAATGCTCCCGCTGCTGGACCTTGTTCTTTGAGGCCAGATATTGCTTTATCTGCACTCAGCAATCTATGCATTGCCTTCTCTATGTATCCAGAGAGTGATCTGTCTATCAGAATCTTTCAGCAGATGCTTGTATGGCTTTCTTGGATAGCTGAGCAGGCGAAACAAGGAAGTTCGATTATTGTAGATATTTCCACCTACCTAGAAGGAATTCACAGCGTATTGCTTTTGCAAAGTGCCTCTTTCAAGGAGAACAACCCATTACAGAATGAGAATTACCATGTAGACCTTATGCTTTTTGTGCTTAAACTTCCCTGGACTCATACGCTCATTGCTATTGATAATCAATTGCCATGGAAAATTAAATGCCTCTCTCTTCAAGTATTATCGAAGTTAGGTCCAGGCTTGAGCACTGAAGCTGTTCTTGAAGTTTTAGATTTGGGTCTTCGTGATGAAGCTGAAGAAGTCAGGACTGAAGCAGCTATTTCTATGCCAGTGATGGTTTTGTGGTCTGGTCTTGATGTATCACCTCCTGTCTTTGAAAGGATGGAGTAA
Protein sequence

>MsG0180006078.01.T01

MELTCRNMAYDSSLGVCLNTLHSSCPVDIVKLTATDLVGVFGSLRRTKSQELKVALCSAYVRIAKVCPPHVWKPEHLISTLCHPEPCLPLIECFQVAVSTLGAHLFVGILGNTKNVALLSNENKSIESKRHGQKRSIQDMDNFKIKRQKTNEEINVADASIEVECKYSCIVTWQRVEDYANHMNKSLLTFVQSLNAPAAGPCSLRPDIALSALSNLCIAFSMYPESDLSIRIFQQMLVWLSWIAEQAKQGSSIIVDISTYLEGIHSVLLLQSASFKENNPLQNENYHVDLMLFVLKLPWTHTLIAIDNQLPWKIKCLSLQVLSKLGPGLSTEAVLEVLDLGLRDEAEEVRTEAAISMPVMVLWSGLDVSPPVFERME*