AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780041241.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041241.01.T01 MTR_7g107350 84.127 189 26 1 1 185 1 189 6.14e-87 280
MsG0780041241.01.T01 MTR_7g107350 90.667 75 7 0 180 254 263 337 4.97e-41 150
MsG0780041241.01.T01 MTR_7g107350 84.127 189 26 1 1 185 1 189 7.62e-87 281
MsG0780041241.01.T01 MTR_7g107350 90.667 75 7 0 180 254 263 337 4.68e-41 150
MsG0780041241.01.T01 MTR_7g107350 84.127 189 26 1 1 185 1 189 8.35e-87 281
MsG0780041241.01.T01 MTR_7g107350 90.667 75 7 0 180 254 263 337 5.14e-41 150
MsG0780041241.01.T01 MTR_7g107350 90.667 75 7 0 180 254 89 163 4.74e-41 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780041241.01.T01 AT3G11960 40.239 251 125 3 25 254 35 281 2.68e-51 180
MsG0780041241.01.T01 AT3G11960 34.839 310 117 7 25 254 35 339 2.73e-47 168
MsG0780041241.01.T01 AT3G11960 34.839 310 117 7 25 254 35 339 2.90e-47 168
MsG0780041241.01.T01 AT3G11960 34.839 310 117 7 25 254 35 339 2.90e-47 168

Find 68 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGGACTTGCGTTTCTATTC+AGG 0.150015 7:+88652823 MsG0780041241.01.T01:CDS
GATAGTTGAACATGTGTTAT+AGG 0.222734 7:-88651044 None:intergenic
GGCTGGTGATGTTCTGTTAA+TGG 0.287005 7:+88652845 MsG0780041241.01.T01:CDS
ACCTTCAAATCGTGAATTAA+TGG 0.320071 7:+88649479 MsG0780041241.01.T01:exon
CAGAGCAAGCGCCATTCTTC+AGG 0.334043 7:+88649593 MsG0780041241.01.T01:CDS
CAAGTCTTGTACACAGATAA+TGG 0.349534 7:-88652888 None:intergenic
GGAAGATCCCTTATGTTTCC+AGG 0.350170 7:-88651071 None:intergenic
TGGAAACATAAGGGATCTTC+CGG 0.364314 7:+88651073 MsG0780041241.01.T01:CDS
GTCTGCTCTTCTATTGCATT+AGG 0.382899 7:-88652924 None:intergenic
GCCGAAAACGACGTCGTTTG+AGG 0.388373 7:-88649643 None:intergenic
AATAGAAGAGCAGACTTATA+TGG 0.397001 7:+88652932 MsG0780041241.01.T01:CDS
GAAAATTGAGAACGAATAAG+AGG 0.402677 7:-88649418 None:intergenic
TATCTAATCCTGGAAACATA+AGG 0.411735 7:+88651063 MsG0780041241.01.T01:CDS
AGGACTTGCGTTTCTATTCA+GGG 0.415894 7:+88652824 MsG0780041241.01.T01:CDS
TTGAGAACGAATAAGAGGTT+TGG 0.416906 7:-88649413 None:intergenic
GGCGGAAGAGCATTCTTGTT+CGG 0.426248 7:-88649508 None:intergenic
GAATGCTGGCAGTTGATTCC+AGG 0.437992 7:+88651099 MsG0780041241.01.T01:CDS
AACGCAAGTCCTGGAGAGTT+AGG 0.447711 7:-88652813 None:intergenic
GCCATTAATTCACGATTTGA+AGG 0.450841 7:-88649480 None:intergenic
GGATCTTCCGGGACGAATGC+TGG 0.455374 7:+88651085 MsG0780041241.01.T01:CDS
CTTTGAAGCAGAGCGGTAGA+AGG 0.455678 7:-88649322 None:intergenic
TCTATGTCAACGTCAATGAC+TGG 0.456371 7:+88652013 MsG0780041241.01.T01:CDS
ATCTAATCCTGGAAACATAA+GGG 0.473153 7:+88651064 MsG0780041241.01.T01:CDS
ATTTCTCAGTATGTTGAAGC+TGG 0.475958 7:+88652762 MsG0780041241.01.T01:intron
GGAAACATAAGGGATCTTCC+GGG 0.478903 7:+88651074 MsG0780041241.01.T01:CDS
CTGAATAGAAACGCAAGTCC+TGG 0.485648 7:-88652822 None:intergenic
GTTGAAGTTCCTAACTCTCC+AGG 0.486064 7:+88652804 MsG0780041241.01.T01:CDS
CATGTTCAACTATCTAATCC+TGG 0.492473 7:+88651053 MsG0780041241.01.T01:CDS
CACACACACCTGTGGACGAC+AGG 0.498740 7:-88649926 None:intergenic
GGAGACATCTATAGAGTTGG+TGG 0.505815 7:+88649804 MsG0780041241.01.T01:intron
TTAGGAGACATCTATAGAGT+TGG 0.513171 7:+88649801 MsG0780041241.01.T01:intron
CTTGCGTTTCTATTCAGGGC+TGG 0.518869 7:+88652828 MsG0780041241.01.T01:CDS
GGCGTAGAGGACCTGAAGAA+TGG 0.519282 7:-88649604 None:intergenic
GCGCGAAATTTGTCATTCCA+TGG 0.530502 7:-88649904 None:intergenic
CTATGTCAACGTCAATGACT+GGG 0.533645 7:+88652014 MsG0780041241.01.T01:CDS
GCTTGCTCTGACAACGCACT+TGG 0.538698 7:-88649580 None:intergenic
GTAGAGGATGATGAAGAAGA+TGG 0.547225 7:-88649540 None:intergenic
AAGATCTTGCTGTATTGCCA+TGG 0.547501 7:+88649887 MsG0780041241.01.T01:CDS
ATTTCGCGCCTGTCGTCCAC+AGG 0.554099 7:+88649918 MsG0780041241.01.T01:CDS
CTGCAAGTGCATATGAAGAT+CGG 0.560230 7:+88651978 MsG0780041241.01.T01:CDS
ATTACACGATCTTGATGTGA+AGG 0.562278 7:+88652968 MsG0780041241.01.T01:CDS
TTGGTGGTGATTGATGAGGA+TGG 0.564878 7:+88649820 MsG0780041241.01.T01:CDS
AAGTGCATATGAAGATCGGC+TGG 0.569724 7:+88651982 MsG0780041241.01.T01:CDS
GAGATAATAACGCGAAGTAG+AGG 0.576038 7:-88649556 None:intergenic
TTGAGGAAGGAGAACGAAGG+TGG 0.576934 7:-88649626 None:intergenic
TGGTGGTGATTGATGAGGAT+GGG 0.580303 7:+88649821 MsG0780041241.01.T01:CDS
AAAACGACGTCGTTTGAGGA+AGG 0.588143 7:-88649639 None:intergenic
GAGTTCGCGATTAATACGAT+TGG 0.592326 7:-88649452 None:intergenic
TTCAAATCGTGAATTAATGG+CGG 0.596795 7:+88649482 MsG0780041241.01.T01:exon
TCAACTGCCAGCATTCGTCC+CGG 0.599865 7:-88651092 None:intergenic
AGAAGATGGACTTGACTTGG+CGG 0.603974 7:-88649526 None:intergenic
TCGTCCACAGGTGTGTGTGA+TGG 0.608224 7:+88649930 MsG0780041241.01.T01:CDS
TAAGAGGTTTGGAATAGCGA+GGG 0.610183 7:-88649402 None:intergenic
TGAAGAAGATGGACTTGACT+TGG 0.611172 7:-88649529 None:intergenic
GAGAACGAAGGTGGGCGTAG+AGG 0.612011 7:-88649617 None:intergenic
ATAAGAGGTTTGGAATAGCG+AGG 0.616997 7:-88649403 None:intergenic
TCAACAATGTTATGTGCTAG+AGG 0.618012 7:-88652786 None:intergenic
AGAGTTGGTGGTGATTGATG+AGG 0.619826 7:+88649816 MsG0780041241.01.T01:CDS
TACACAGATAATGGATTGCG+AGG 0.626617 7:-88652879 None:intergenic
TGAGGAAGGAGAACGAAGGT+GGG 0.628082 7:-88649625 None:intergenic
AATGTAGAAAACCACGACAC+GGG 0.637071 7:-88649295 None:intergenic
GGTTCATTGAGAGTAGAGAA+TGG 0.638218 7:-88649381 None:intergenic
ATTGCCATCACACACACCTG+TGG 0.646503 7:-88649934 None:intergenic
AAACATATAAACCCGTGTCG+TGG 0.653316 7:+88649284 MsG0780041241.01.T01:five_prime_UTR
AAATGTAGAAAACCACGACA+CGG 0.671304 7:-88649296 None:intergenic
TGGGAGTGATATCATTGATG+AGG 0.712202 7:+88652033 MsG0780041241.01.T01:CDS
TATTGAACTTTGAAGCAGAG+CGG 0.721509 7:-88649329 None:intergenic
CGTTTGAGGAAGGAGAACGA+AGG 0.787369 7:-88649629 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAGCTATTATTCTAAAT+AGG + Chr7:88652532-88652551 MsG0780041241.01.T01:intron 15.0%
!!! AAAACAACTGATATTTTATA+AGG - Chr7:88650656-88650675 None:intergenic 15.0%
!!! TATTGTTTTTTGATGATTTT+AGG + Chr7:88649783-88649802 MsG0780041241.01.T01:intron 15.0%
!!! TTGATTCATTTATATTTTCT+GGG + Chr7:88649965-88649984 MsG0780041241.01.T01:intron 15.0%
!!! TTTGATTCATTTATATTTTC+TGG + Chr7:88649964-88649983 MsG0780041241.01.T01:intron 15.0%
!! AGATAAATATTGGAGAAAAA+AGG - Chr7:88651297-88651316 None:intergenic 20.0%
!! AGATATATATTAATGCTCAT+TGG + Chr7:88651633-88651652 MsG0780041241.01.T01:intron 20.0%
!! GATAAATATTGGAGAAAAAA+GGG - Chr7:88651296-88651315 None:intergenic 20.0%
!! TAACTAAATAAAAGTGGAAA+GGG - Chr7:88649686-88649705 None:intergenic 20.0%
!! TCAAATCAAATAATGTTACT+TGG + Chr7:88651867-88651886 MsG0780041241.01.T01:intron 20.0%
!!! ATTTCACATGTTTTGAATAA+AGG - Chr7:88650253-88650272 None:intergenic 20.0%
!!! TCATGAACTACATTTTTTTT+TGG + Chr7:88650953-88650972 MsG0780041241.01.T01:intron 20.0%
!!! TTTAGAATAATAGCTAATAC+AGG - Chr7:88652531-88652550 None:intergenic 20.0%
!!! TTTCTAGTTGGAAATTTTAT+TGG + Chr7:88651130-88651149 MsG0780041241.01.T01:intron 20.0%
!!! TTTTTGATATTTGACAAGAT+TGG + Chr7:88650691-88650710 MsG0780041241.01.T01:intron 20.0%
!!! TTTTTTCTCCAATATTTATC+TGG + Chr7:88651296-88651315 MsG0780041241.01.T01:intron 20.0%
! AAAAAATGAGAAAGCTTCAT+AGG - Chr7:88651000-88651019 None:intergenic 25.0%
! AAAAATGAGAAAGCTTCATA+GGG - Chr7:88650999-88651018 None:intergenic 25.0%
! AACCATGTATTAATAGGTTT+AGG - Chr7:88649726-88649745 None:intergenic 25.0%
! AACCTAAACCTATTAATACA+TGG + Chr7:88649721-88649740 MsG0780041241.01.T01:intron 25.0%
! AACTAAATAAAAGTGGAAAG+GGG - Chr7:88649685-88649704 None:intergenic 25.0%
! ACTACTAGGTTAATATAAAG+TGG + Chr7:88651774-88651793 MsG0780041241.01.T01:intron 25.0%
! ATATCATGCCAGATAAATAT+TGG - Chr7:88651307-88651326 None:intergenic 25.0%
! CAAACCTAACTAAATAAAAG+TGG - Chr7:88649692-88649711 None:intergenic 25.0%
! CTAACTAAATAAAAGTGGAA+AGG - Chr7:88649687-88649706 None:intergenic 25.0%
! GGTTAGTGTAATTTAATGAA+TGG + Chr7:88649742-88649761 MsG0780041241.01.T01:intron 25.0%
! TACACTAACCATGTATTAAT+AGG - Chr7:88649732-88649751 None:intergenic 25.0%
! TATTACTAAATACTAACTCC+TGG + Chr7:88651927-88651946 MsG0780041241.01.T01:intron 25.0%
! TCTAAATGAATTGCTCTTAT+TGG + Chr7:88652708-88652727 MsG0780041241.01.T01:intron 25.0%
! TCTTTAATGATACCAAAAAC+AGG - Chr7:88649871-88649890 None:intergenic 25.0%
! TGTAAATAGTTACACTTCTA+CGG - Chr7:88652279-88652298 None:intergenic 25.0%
!! AAATTTGTCTTGTTATCTTC+TGG + Chr7:88652175-88652194 MsG0780041241.01.T01:intron 25.0%
!! ATTCATATATAGCAGTTTTC+TGG + Chr7:88652110-88652129 MsG0780041241.01.T01:intron 25.0%
!! ATTGGTACTGCATATTATTT+TGG + Chr7:88650867-88650886 MsG0780041241.01.T01:intron 25.0%
!! CAAGTAGATTTTAAATGCAT+TGG - Chr7:88651531-88651550 None:intergenic 25.0%
!! TAGTTGGAAATTTTATTGGA+AGG + Chr7:88651134-88651153 MsG0780041241.01.T01:intron 25.0%
!! TATGTTTTCAATTGCCTATA+GGG + Chr7:88650034-88650053 MsG0780041241.01.T01:intron 25.0%
!! TTGGTACTGCATATTATTTT+GGG + Chr7:88650868-88650887 MsG0780041241.01.T01:intron 25.0%
!! TTTAGTTAGGTTTGCAATTT+TGG + Chr7:88649698-88649717 MsG0780041241.01.T01:intron 25.0%
!!! AGTTATATTTTTGTTAGACG+AGG + Chr7:88650347-88650366 MsG0780041241.01.T01:intron 25.0%
!!! CTTTCCACTTTTATTTAGTT+AGG + Chr7:88649685-88649704 MsG0780041241.01.T01:intron 25.0%
AAAAAAGGGAACAAATTCAG+GGG - Chr7:88651282-88651301 None:intergenic 30.0%
AATAGAAGAGCAGACTTATA+TGG + Chr7:88652932-88652951 MsG0780041241.01.T01:CDS 30.0%
AATGAATTGCTCTTATTGGA+AGG + Chr7:88652712-88652731 MsG0780041241.01.T01:intron 30.0%
ACCGATAATAAACAAGTCAT+AGG + Chr7:88651386-88651405 MsG0780041241.01.T01:intron 30.0%
ACCTTCAAATCGTGAATTAA+TGG + Chr7:88649479-88649498 MsG0780041241.01.T01:exon 30.0%
ACTAAATAAAAGTGGAAAGG+GGG - Chr7:88649684-88649703 None:intergenic 30.0%
AGAAAAAAGGGAACAAATTC+AGG - Chr7:88651284-88651303 None:intergenic 30.0%
ATCTAATCCTGGAAACATAA+GGG + Chr7:88651064-88651083 MsG0780041241.01.T01:CDS 30.0%
ATGACCATAGATCAAATTTC+TGG - Chr7:88651259-88651278 None:intergenic 30.0%
CCGATAATAAACAAGTCATA+GGG + Chr7:88651387-88651406 MsG0780041241.01.T01:intron 30.0%
CTAATTCCACCATGATATAA+CGG + Chr7:88650171-88650190 MsG0780041241.01.T01:intron 30.0%
CTATAGGCAATTGAAAACAT+AGG - Chr7:88650035-88650054 None:intergenic 30.0%
GAAAAAAGGGAACAAATTCA+GGG - Chr7:88651283-88651302 None:intergenic 30.0%
GAAAATTGAGAACGAATAAG+AGG - Chr7:88649421-88649440 None:intergenic 30.0%
GACGAAATATACTTATGTGA+TGG + Chr7:88652354-88652373 MsG0780041241.01.T01:intron 30.0%
GATAGTTGAACATGTGTTAT+AGG - Chr7:88651047-88651066 None:intergenic 30.0%
GATATCGATCCTATAATGAA+CGG + Chr7:88650385-88650404 MsG0780041241.01.T01:intron 30.0%
GCTATTATTCTAAATAGGTG+TGG + Chr7:88652537-88652556 MsG0780041241.01.T01:intron 30.0%
GTCTATATACCGTTATATCA+TGG - Chr7:88650183-88650202 None:intergenic 30.0%
TAGAAAAGCTGATATTGACA+TGG - Chr7:88651807-88651826 None:intergenic 30.0%
TATATACCGTTATATCATGG+TGG - Chr7:88650180-88650199 None:intergenic 30.0%
TATCTAATCCTGGAAACATA+AGG + Chr7:88651063-88651082 MsG0780041241.01.T01:CDS 30.0%
TCACATAAGTATATTTCGTC+AGG - Chr7:88652354-88652373 None:intergenic 30.0%
TCTATTCTTTAGCGTGATAA+GGG - Chr7:88651698-88651717 None:intergenic 30.0%
TGACCATAGATCAAATTTCT+GGG - Chr7:88651258-88651277 None:intergenic 30.0%
TTCAAATCGTGAATTAATGG+CGG + Chr7:88649482-88649501 MsG0780041241.01.T01:exon 30.0%
TTGGAATAAACTCTTGACAA+TGG - Chr7:88652579-88652598 None:intergenic 30.0%
TTGTTGAACTTCAGTAAGAT+TGG + Chr7:88652215-88652234 MsG0780041241.01.T01:intron 30.0%
! AATCCATTATTTTCCCCTAT+AGG - Chr7:88650051-88650070 None:intergenic 30.0%
! ATGTTTTCAATTGCCTATAG+GGG + Chr7:88650035-88650054 MsG0780041241.01.T01:intron 30.0%
! CATTTTGCAATGAAATGAAC+AGG + Chr7:88650810-88650829 MsG0780041241.01.T01:intron 30.0%
! CTATGTTTTCAATTGCCTAT+AGG + Chr7:88650033-88650052 MsG0780041241.01.T01:intron 30.0%
! GTAGATTTTAAATGCATTGG+AGG - Chr7:88651528-88651547 None:intergenic 30.0%
! TATAGAGCAATTTTCAGACT+TGG - Chr7:88652598-88652617 None:intergenic 30.0%
!! ATATCAGCTTTTCTAAAAGC+CGG + Chr7:88651812-88651831 MsG0780041241.01.T01:intron 30.0%
!! CCCTATGACTTGTTTATTAT+CGG - Chr7:88651390-88651409 None:intergenic 30.0%
!! TATATTTTTGTTAGACGAGG+AGG + Chr7:88650350-88650369 MsG0780041241.01.T01:intron 30.0%
!! TTTTGGGTGAATTTTCAGAT+TGG + Chr7:88650884-88650903 MsG0780041241.01.T01:intron 30.0%
!! TTTTTGTTATGCATTGTCGT+AGG + Chr7:88651015-88651034 MsG0780041241.01.T01:CDS 30.0%
AAAAACAGGCTGATCACAAA+CGG - Chr7:88649857-88649876 None:intergenic 35.0%
AAATGTAGAAAACCACGACA+CGG - Chr7:88649299-88649318 None:intergenic 35.0%
AATTTGAACTCTGTTGACCA+AGG - Chr7:88650632-88650651 None:intergenic 35.0%
ACTAATACAAGTTTGCAGAG+TGG - Chr7:88651205-88651224 None:intergenic 35.0%
AGTTACACTTCTACGGTATA+GGG - Chr7:88652272-88652291 None:intergenic 35.0%
ATGCAGAAAACCAGTATTAG+TGG + Chr7:88652445-88652464 MsG0780041241.01.T01:intron 35.0%
ATGTAGTCAAATAGCTGCTA+TGG - Chr7:88650110-88650129 None:intergenic 35.0%
ATTACACGATCTTGATGTGA+AGG + Chr7:88652968-88652987 MsG0780041241.01.T01:CDS 35.0%
ATTTCTCAGTATGTTGAAGC+TGG + Chr7:88652762-88652781 MsG0780041241.01.T01:intron 35.0%
CAGAGGGATATATTATTCTC+TGG - Chr7:88652393-88652412 None:intergenic 35.0%
CATGTTCAACTATCTAATCC+TGG + Chr7:88651053-88651072 MsG0780041241.01.T01:CDS 35.0%
CCAAATAGTACCACTAATAC+TGG - Chr7:88652458-88652477 None:intergenic 35.0%
CCAGTATTAGTGGTACTATT+TGG + Chr7:88652455-88652474 MsG0780041241.01.T01:intron 35.0%
GACCATAGATCAAATTTCTG+GGG - Chr7:88651257-88651276 None:intergenic 35.0%
GCCATTAATTCACGATTTGA+AGG - Chr7:88649483-88649502 None:intergenic 35.0%
GTCTATTCTTTAGCGTGATA+AGG - Chr7:88651699-88651718 None:intergenic 35.0%
GTGTTCACATTAGATGGATA+TGG - Chr7:88651676-88651695 None:intergenic 35.0%
TAGTCTATCCAAGATCCTTT+GGG - Chr7:88651758-88651777 None:intergenic 35.0%
TAGTTACACTTCTACGGTAT+AGG - Chr7:88652273-88652292 None:intergenic 35.0%
TATGACATTAGTCCTCATCA+CGG - Chr7:88651491-88651510 None:intergenic 35.0%
TCAACAATGTTATGTGCTAG+AGG - Chr7:88652789-88652808 None:intergenic 35.0%
TCCATTACTCCGTTCATTAT+AGG - Chr7:88650397-88650416 None:intergenic 35.0%
TCCTATAATGAACGGAGTAA+TGG + Chr7:88650393-88650412 MsG0780041241.01.T01:intron 35.0%
TTAGGAGACATCTATAGAGT+TGG + Chr7:88649801-88649820 MsG0780041241.01.T01:intron 35.0%
TTGAGAACGAATAAGAGGTT+TGG - Chr7:88649416-88649435 None:intergenic 35.0%
TTGCCTATAGGGGAAAATAA+TGG + Chr7:88650045-88650064 MsG0780041241.01.T01:intron 35.0%
! AAAGGTTTGAGACTGCAATT+TGG - Chr7:88650235-88650254 None:intergenic 35.0%
! AAGGTTTGAGACTGCAATTT+GGG - Chr7:88650234-88650253 None:intergenic 35.0%
! ATGCATTTTCTTTGTCCTAC+AGG + Chr7:88652674-88652693 MsG0780041241.01.T01:intron 35.0%
! ATTTTCTTTGTCCTACAGGA+GGG + Chr7:88652678-88652697 MsG0780041241.01.T01:intron 35.0%
! CAAGTCTTGTACACAGATAA+TGG - Chr7:88652891-88652910 None:intergenic 35.0%
! CGTTATATCATGGTGGAATT+AGG - Chr7:88650173-88650192 None:intergenic 35.0%
!! ATAAGGGTGTTCACATTAGA+TGG - Chr7:88651682-88651701 None:intergenic 35.0%
!! ATAGCAGTTTTCTGGTACAT+AGG + Chr7:88652118-88652137 MsG0780041241.01.T01:intron 35.0%
!! TATTGAACTTTGAAGCAGAG+CGG - Chr7:88649332-88649351 None:intergenic 35.0%
!! TCTTCTCTTTTTCGTTGGAT+TGG + Chr7:88650849-88650868 MsG0780041241.01.T01:intron 35.0%
!!! ACTAATACTGGTTTTCTGCA+TGG - Chr7:88652446-88652465 None:intergenic 35.0%
AAACATATAAACCCGTGTCG+TGG + Chr7:88649284-88649303 MsG0780041241.01.T01:five_prime_UTR 40.0%
AATCCGATAAAGCAACCAAG+AGG - Chr7:88650769-88650788 None:intergenic 40.0%
AATGTAGAAAACCACGACAC+GGG - Chr7:88649298-88649317 None:intergenic 40.0%
AGAGAAGACAGTGAAAGAAG+TGG - Chr7:88650837-88650856 None:intergenic 40.0%
AGATTCCCGAAACCAATCAA+GGG + Chr7:88652498-88652517 MsG0780041241.01.T01:intron 40.0%
AGCCCCAGAAATTTGATCTA+TGG + Chr7:88651252-88651271 MsG0780041241.01.T01:intron 40.0%
AGGACTTGCGTTTCTATTCA+GGG + Chr7:88652824-88652843 MsG0780041241.01.T01:CDS 40.0%
AGGATCTTGGATAGACTACT+AGG + Chr7:88651760-88651779 MsG0780041241.01.T01:intron 40.0%
AGGCAACTGGGCATAAATAT+AGG + Chr7:88652150-88652169 MsG0780041241.01.T01:intron 40.0%
ATGACCTGAGTGACCAATAA+CGG + Chr7:88651729-88651748 MsG0780041241.01.T01:intron 40.0%
ATTATCCCCAAACCATGCTT+GGG + Chr7:88651327-88651346 MsG0780041241.01.T01:intron 40.0%
CAACTAGAAAAGAGATCACC+TGG - Chr7:88651120-88651139 None:intergenic 40.0%
CTATGTCAACGTCAATGACT+GGG + Chr7:88652014-88652033 MsG0780041241.01.T01:CDS 40.0%
CTGCAAGTGCATATGAAGAT+CGG + Chr7:88651978-88651997 MsG0780041241.01.T01:CDS 40.0%
GAGATAATAACGCGAAGTAG+AGG - Chr7:88649559-88649578 None:intergenic 40.0%
GAGTTCGCGATTAATACGAT+TGG - Chr7:88649455-88649474 None:intergenic 40.0%
GATCGTTGTTTGTAGACATC+GGG - Chr7:88651425-88651444 None:intergenic 40.0%
GGATCGTTGTTTGTAGACAT+CGG - Chr7:88651426-88651445 None:intergenic 40.0%
GGCAACTGGGCATAAATATA+GGG + Chr7:88652151-88652170 MsG0780041241.01.T01:intron 40.0%
GGTTCATTGAGAGTAGAGAA+TGG - Chr7:88649384-88649403 None:intergenic 40.0%
GTAGAGGATGATGAAGAAGA+TGG - Chr7:88649543-88649562 None:intergenic 40.0%
GTAGTCTATCCAAGATCCTT+TGG - Chr7:88651759-88651778 None:intergenic 40.0%
GTCTGCTCTTCTATTGCATT+AGG - Chr7:88652927-88652946 None:intergenic 40.0%
TAGATTCCCGAAACCAATCA+AGG + Chr7:88652497-88652516 MsG0780041241.01.T01:intron 40.0%
TAGTCAAATAGCTGCTATGG+TGG - Chr7:88650107-88650126 None:intergenic 40.0%
TATTATCCCCAAACCATGCT+TGG + Chr7:88651326-88651345 MsG0780041241.01.T01:intron 40.0%
TCTATGTCAACGTCAATGAC+TGG + Chr7:88652013-88652032 MsG0780041241.01.T01:CDS 40.0%
TGGAAACATAAGGGATCTTC+CGG + Chr7:88651073-88651092 MsG0780041241.01.T01:CDS 40.0%
TGGACACATGAAAGAAGCAA+AGG + Chr7:88650413-88650432 MsG0780041241.01.T01:intron 40.0%
TGGGAGTGATATCATTGATG+AGG + Chr7:88652033-88652052 MsG0780041241.01.T01:CDS 40.0%
TGGTACATAGGTGATCTGAT+AGG + Chr7:88652130-88652149 MsG0780041241.01.T01:intron 40.0%
TTCATCAATCAGACAGTCCT+TGG + Chr7:88650612-88650631 MsG0780041241.01.T01:intron 40.0%
TTTCTGGGTCGACATTAGTA+GGG + Chr7:88649980-88649999 MsG0780041241.01.T01:intron 40.0%
! AAGATCTTGCTGTATTGCCA+TGG + Chr7:88649887-88649906 MsG0780041241.01.T01:CDS 40.0%
! ACAGGATGGTACAGTAGTTT+TGG - Chr7:88652060-88652079 None:intergenic 40.0%
! AGACCTCTTGGTTGCTTTAT+CGG + Chr7:88650763-88650782 MsG0780041241.01.T01:intron 40.0%
! ATAAGAGGTTTGGAATAGCG+AGG - Chr7:88649406-88649425 None:intergenic 40.0%
! CATTTTCTTTGTCCTACAGG+AGG + Chr7:88652677-88652696 MsG0780041241.01.T01:intron 40.0%
! GTTTGTGATCAGCCTGTTTT+TGG + Chr7:88649856-88649875 MsG0780041241.01.T01:CDS 40.0%
! TAAGAGGTTTGGAATAGCGA+GGG - Chr7:88649405-88649424 None:intergenic 40.0%
! TCAGGTCAGATTGTATTGGT+GGG + Chr7:88651463-88651482 MsG0780041241.01.T01:intron 40.0%
! TGAAGAAGATGGACTTGACT+TGG - Chr7:88649532-88649551 None:intergenic 40.0%
! TTGGTTGCTTTATCGGATTC+TGG + Chr7:88650770-88650789 MsG0780041241.01.T01:intron 40.0%
! TTTTCTGGGTCGACATTAGT+AGG + Chr7:88649979-88649998 MsG0780041241.01.T01:intron 40.0%
! TTTTCTTTGTCCTACAGGAG+GGG + Chr7:88652679-88652698 MsG0780041241.01.T01:intron 40.0%
!! CACTGTCTTCTCTTTTTCGT+TGG + Chr7:88650844-88650863 MsG0780041241.01.T01:intron 40.0%
!! CAGGTGATCTCTTTTCTAGT+TGG + Chr7:88651118-88651137 MsG0780041241.01.T01:intron 40.0%
!! GGTGTGGTGATTGATTTGTT+TGG + Chr7:88652553-88652572 MsG0780041241.01.T01:intron 40.0%
!! TACACAGATAATGGATTGCG+AGG - Chr7:88652882-88652901 None:intergenic 40.0%
!!! TTTTTTCCAACACCAACGTG+CGG - Chr7:88652090-88652109 None:intergenic 40.0%
AAAACGACGTCGTTTGAGGA+AGG - Chr7:88649642-88649661 None:intergenic 45.0%
AAACCATGCTTGGGAAACTC+CGG + Chr7:88651336-88651355 MsG0780041241.01.T01:intron 45.0%
AAGTGCATATGAAGATCGGC+TGG + Chr7:88651982-88652001 MsG0780041241.01.T01:CDS 45.0%
ACATGAAACACTACACACGC+AGG - Chr7:88650507-88650526 None:intergenic 45.0%
ACCTTGAGTCTACCAAACAG+AGG - Chr7:88650741-88650760 None:intergenic 45.0%
AGCGTATCGCGAAACAACAA+CGG + Chr7:88650142-88650161 MsG0780041241.01.T01:intron 45.0%
AGGTGATCTGATAGGCAACT+GGG + Chr7:88652138-88652157 MsG0780041241.01.T01:intron 45.0%
AGTAACACTCCATGCTGCAA+AGG - Chr7:88651362-88651381 None:intergenic 45.0%
AGTTTCCCAAGCATGGTTTG+GGG - Chr7:88651335-88651354 None:intergenic 45.0%
CAGGACTTGCGTTTCTATTC+AGG + Chr7:88652823-88652842 MsG0780041241.01.T01:CDS 45.0%
CATGAAACACTACACACGCA+GGG - Chr7:88650506-88650525 None:intergenic 45.0%
CCTTGAGTCTACCAAACAGA+GGG - Chr7:88650740-88650759 None:intergenic 45.0%
CTACAAACAACGATCCCTTG+TGG + Chr7:88651430-88651449 MsG0780041241.01.T01:intron 45.0%
CTCAGGTCAGATTGTATTGG+TGG + Chr7:88651462-88651481 MsG0780041241.01.T01:intron 45.0%
CTGAATAGAAACGCAAGTCC+TGG - Chr7:88652825-88652844 None:intergenic 45.0%
CTGCTCAGGTCAGATTGTAT+TGG + Chr7:88651459-88651478 MsG0780041241.01.T01:intron 45.0%
CTGTTAGTGAAGAGTCACGA+TGG + Chr7:88651837-88651856 MsG0780041241.01.T01:intron 45.0%
CTTGAGTCTACCAAACAGAG+GGG - Chr7:88650739-88650758 None:intergenic 45.0%
GACTCAAGGTAAAGACCTCT+TGG + Chr7:88650751-88650770 MsG0780041241.01.T01:intron 45.0%
GAGTTTCCCAAGCATGGTTT+GGG - Chr7:88651336-88651355 None:intergenic 45.0%
GATTCCCGAAACCAATCAAG+GGG + Chr7:88652499-88652518 MsG0780041241.01.T01:intron 45.0%
GCAGTCTCTTCACTTTCAGA+GGG - Chr7:88652409-88652428 None:intergenic 45.0%
GCGCGAAATTTGTCATTCCA+TGG - Chr7:88649907-88649926 None:intergenic 45.0%
GCGTGTGTAGTGTTTCATGT+TGG + Chr7:88650507-88650526 MsG0780041241.01.T01:intron 45.0%
GCTGATATTGACATGGCATG+TGG - Chr7:88651800-88651819 None:intergenic 45.0%
GGAAACATAAGGGATCTTCC+GGG + Chr7:88651074-88651093 MsG0780041241.01.T01:CDS 45.0%
GGAAGATCCCTTATGTTTCC+AGG - Chr7:88651074-88651093 None:intergenic 45.0%
GGAGACATCTATAGAGTTGG+TGG + Chr7:88649804-88649823 MsG0780041241.01.T01:intron 45.0%
GGCAGAAAGACACACAACTA+AGG - Chr7:88651184-88651203 None:intergenic 45.0%
GTTAGACGAGGAGGAGTTAA+TGG + Chr7:88650359-88650378 MsG0780041241.01.T01:intron 45.0%
GTTGAAGTTCCTAACTCTCC+AGG + Chr7:88652804-88652823 MsG0780041241.01.T01:CDS 45.0%
TAGGTGATCTGATAGGCAAC+TGG + Chr7:88652137-88652156 MsG0780041241.01.T01:intron 45.0%
TGACTCTTCACTAACAGCTC+CGG - Chr7:88651834-88651853 None:intergenic 45.0%
TGCAGTCTCTTCACTTTCAG+AGG - Chr7:88652410-88652429 None:intergenic 45.0%
TTGAGTCTACCAAACAGAGG+GGG - Chr7:88650738-88650757 None:intergenic 45.0%
! CAGGTCAGATTGTATTGGTG+GGG + Chr7:88651464-88651483 MsG0780041241.01.T01:intron 45.0%
! GGCTGGTGATGTTCTGTTAA+TGG + Chr7:88652845-88652864 MsG0780041241.01.T01:CDS 45.0%
! TGGTGGTGATTGATGAGGAT+GGG + Chr7:88649821-88649840 MsG0780041241.01.T01:CDS 45.0%
!! AGAAGATGGACTTGACTTGG+CGG - Chr7:88649529-88649548 None:intergenic 45.0%
!! AGAGTTGGTGGTGATTGATG+AGG + Chr7:88649816-88649835 MsG0780041241.01.T01:CDS 45.0%
!! TCCTCAAACGACGTCGTTTT+CGG + Chr7:88649642-88649661 MsG0780041241.01.T01:CDS 45.0%
!! TTGGTGGTGATTGATGAGGA+TGG + Chr7:88649820-88649839 MsG0780041241.01.T01:CDS 45.0%
AACGCAAGTCCTGGAGAGTT+AGG - Chr7:88652816-88652835 None:intergenic 50.0%
ACCACTGCAGAAAGAGAACC+AGG - Chr7:88651948-88651967 None:intergenic 50.0%
ATCCTTTGGGTCGCCGTTAT+TGG - Chr7:88651745-88651764 None:intergenic 50.0%
ATTGCCATCACACACACCTG+TGG - Chr7:88649937-88649956 None:intergenic 50.0%
CCAACGTGCGGCTTAAAAAC+AGG - Chr7:88652078-88652097 None:intergenic 50.0%
CCCTCTGTTTGGTAGACTCA+AGG + Chr7:88650737-88650756 MsG0780041241.01.T01:intron 50.0%
CGTGCGGCTTAAAAACAGGA+TGG - Chr7:88652074-88652093 None:intergenic 50.0%
CGTTTGAGGAAGGAGAACGA+AGG - Chr7:88649632-88649651 None:intergenic 50.0%
CTTGCGTTTCTATTCAGGGC+TGG + Chr7:88652828-88652847 MsG0780041241.01.T01:CDS 50.0%
GACGAGGAGGAGTTAATGGA+AGG + Chr7:88650363-88650382 MsG0780041241.01.T01:intron 50.0%
GGAGTTTCCCAAGCATGGTT+TGG - Chr7:88651337-88651356 None:intergenic 50.0%
TGAGGAAGGAGAACGAAGGT+GGG - Chr7:88649628-88649647 None:intergenic 50.0%
TGAGTCTACCAAACAGAGGG+GGG - Chr7:88650737-88650756 None:intergenic 50.0%
TTGAGGAAGGAGAACGAAGG+TGG - Chr7:88649629-88649648 None:intergenic 50.0%
TTTAAGCCGCACGTTGGTGT+TGG + Chr7:88652081-88652100 MsG0780041241.01.T01:intron 50.0%
! GAATGCTGGCAGTTGATTCC+AGG + Chr7:88651099-88651118 MsG0780041241.01.T01:CDS 50.0%
! TCCTGGTTCTCTTTCTGCAG+TGG + Chr7:88651944-88651963 MsG0780041241.01.T01:intron 50.0%
!! AAACGACGTCGTTTTCGGCA+AGG + Chr7:88649647-88649666 MsG0780041241.01.T01:CDS 50.0%
!! CTTTGAAGCAGAGCGGTAGA+AGG - Chr7:88649325-88649344 None:intergenic 50.0%
!! GGCGGAAGAGCATTCTTGTT+CGG - Chr7:88649511-88649530 None:intergenic 50.0%
!! TTCCGCCCCTTGATTGGTTT+CGG - Chr7:88652507-88652526 None:intergenic 50.0%
!!! CCTGTTTTTAAGCCGCACGT+TGG + Chr7:88652075-88652094 MsG0780041241.01.T01:intron 50.0%
AAACTCCGGCCTTTGCAGCA+TGG + Chr7:88651350-88651369 MsG0780041241.01.T01:intron 55.0%
AACGGCGACCCAAAGGATCT+TGG + Chr7:88651747-88651766 MsG0780041241.01.T01:intron 55.0%
ACACTCCATGCTGCAAAGGC+CGG - Chr7:88651358-88651377 None:intergenic 55.0%
ACAGGATTCCGCCCCTTGAT+TGG - Chr7:88652513-88652532 None:intergenic 55.0%
ACCAAACAGAGGGGGGAGAA+AGG - Chr7:88650730-88650749 None:intergenic 55.0%
CAGAGCAAGCGCCATTCTTC+AGG + Chr7:88649593-88649612 MsG0780041241.01.T01:CDS 55.0%
CTGAGCAGCTGCAACCACAA+GGG - Chr7:88651447-88651466 None:intergenic 55.0%
GACCAATAACGGCGACCCAA+AGG + Chr7:88651740-88651759 MsG0780041241.01.T01:intron 55.0%
GCCGAAAACGACGTCGTTTG+AGG - Chr7:88649646-88649665 None:intergenic 55.0%
GCTTGCTCTGACAACGCACT+TGG - Chr7:88649583-88649602 None:intergenic 55.0%
GGCGTAGAGGACCTGAAGAA+TGG - Chr7:88649607-88649626 None:intergenic 55.0%
GGGTCGACATTAGTAGGGTG+AGG + Chr7:88649985-88650004 MsG0780041241.01.T01:intron 55.0%
GTCGCCGTTATTGGTCACTC+AGG - Chr7:88651736-88651755 None:intergenic 55.0%
TAGAAGAGCTCCCCTCCTGT+AGG - Chr7:88652692-88652711 None:intergenic 55.0%
TATTGGTGGGGACCGTGATG+AGG + Chr7:88651476-88651495 MsG0780041241.01.T01:intron 55.0%
TCAACTGCCAGCATTCGTCC+CGG - Chr7:88651095-88651114 None:intergenic 55.0%
TCCCGAAACCAATCAAGGGG+CGG + Chr7:88652502-88652521 MsG0780041241.01.T01:intron 55.0%
TCCTTTCTCCCCCCTCTGTT+TGG + Chr7:88650726-88650745 MsG0780041241.01.T01:intron 55.0%
TCGTCCACAGGTGTGTGTGA+TGG + Chr7:88649930-88649949 MsG0780041241.01.T01:CDS 55.0%
!! TCCGCCCCTTGATTGGTTTC+GGG - Chr7:88652506-88652525 None:intergenic 55.0%
AGGCCGGAGTTTCCCAAGCA+TGG - Chr7:88651342-88651361 None:intergenic 60.0%
ATTTCGCGCCTGTCGTCCAC+AGG + Chr7:88649918-88649937 MsG0780041241.01.T01:CDS 60.0%
CACACACACCTGTGGACGAC+AGG - Chr7:88649929-88649948 None:intergenic 60.0%
CCTGAGCAGCTGCAACCACA+AGG - Chr7:88651448-88651467 None:intergenic 60.0%
CCTTGTGGTTGCAGCTGCTC+AGG + Chr7:88651445-88651464 MsG0780041241.01.T01:intron 60.0%
GAGAACGAAGGTGGGCGTAG+AGG - Chr7:88649620-88649639 None:intergenic 60.0%
GGATCTTCCGGGACGAATGC+TGG + Chr7:88651085-88651104 MsG0780041241.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 88649284 88652995 88649284 ID=MsG0780041241.01;Name=MsG0780041241.01
Chr7 mRNA 88649284 88652995 88649284 ID=MsG0780041241.01.T01;Parent=MsG0780041241.01;Name=MsG0780041241.01.T01;_AED=0.49;_eAED=0.52;_QI=214|0.5|0.4|1|0.75|0.6|5|0|257
Chr7 exon 88649284 88649668 88649284 ID=MsG0780041241.01.T01:exon:20524;Parent=MsG0780041241.01.T01
Chr7 exon 88649805 88649958 88649805 ID=MsG0780041241.01.T01:exon:20525;Parent=MsG0780041241.01.T01
Chr7 exon 88650988 88651120 88650988 ID=MsG0780041241.01.T01:exon:20526;Parent=MsG0780041241.01.T01
Chr7 exon 88651964 88652054 88651964 ID=MsG0780041241.01.T01:exon:20527;Parent=MsG0780041241.01.T01
Chr7 exon 88652771 88652995 88652771 ID=MsG0780041241.01.T01:exon:20528;Parent=MsG0780041241.01.T01
Chr7 five_prime_UTR 88649284 88649497 88649284 ID=MsG0780041241.01.T01:five_prime_utr;Parent=MsG0780041241.01.T01
Chr7 CDS 88649498 88649668 88649498 ID=MsG0780041241.01.T01:cds;Parent=MsG0780041241.01.T01
Chr7 CDS 88649805 88649958 88649805 ID=MsG0780041241.01.T01:cds;Parent=MsG0780041241.01.T01
Chr7 CDS 88650988 88651120 88650988 ID=MsG0780041241.01.T01:cds;Parent=MsG0780041241.01.T01
Chr7 CDS 88651964 88652054 88651964 ID=MsG0780041241.01.T01:cds;Parent=MsG0780041241.01.T01
Chr7 CDS 88652771 88652995 88652771 ID=MsG0780041241.01.T01:cds;Parent=MsG0780041241.01.T01
Gene Sequence

>MsG0780041241.01.T01

ATGGCGGTTTCCGAACAAGAATGCTCTTCCGCCAAGTCAAGTCCATCTTCTTCATCATCCTCTACTTCGCGTTATTATCTCTCCAAGTGCGTTGTCAGAGCAAGCGCCATTCTTCAGGTCCTCTACGCCCACCTTCGTTCTCCTTCCTCAAACGACGTCGTTTTCGGCAAGGAGACATCTATAGAGTTGGTGGTGATTGATGAGGATGGGAATGTACAAACCGTTTGTGATCAGCCTGTTTTTGGTATCATTAAAGATCTTGCTGTATTGCCATGGAATGACAAATTTCGCGCCTGTCGTCCACAGGTGTGTGTGATGGCAATTACTCTATATCCCTATGAAGCTTTCTCATTTTTTGTTATGCATTGTCGTAGGTTTTTTCCTATAACACATGTTCAACTATCTAATCCTGGAAACATAAGGGATCTTCCGGGACGAATGCTGGCAGTTGATTCCAGTGGTTGTTTTATAGCTGCAAGTGCATATGAAGATCGGCTGGCTCTGTTTTCTATGTCAACGTCAATGACTGGGAGTGATATCATTGATGAGTATGTTGAAGCTGGACCTCTAGCACATAACATTGTTGAAGTTCCTAACTCTCCAGGACTTGCGTTTCTATTCAGGGCTGGTGATGTTCTGTTAATGGATTTTAGAGATCCTCGCAATCCATTATCTGTGTACAAGACTTGCTTGAACATTTTACCTAATGCAATAGAAGAGCAGACTTATATGGACGACTCTTGTAAATTACACGATCTTGATGTGAAGGCTTAG
Protein sequence

>MsG0780041241.01.T01

MAVSEQECSSAKSSPSSSSSSTSRYYLSKCVVRASAILQVLYAHLRSPSSNDVVFGKETSIELVVIDEDGNVQTVCDQPVFGIIKDLAVLPWNDKFRACRPQVCVMAITLYPYEAFSFFVMHCRRFFPITHVQLSNPGNIRDLPGRMLAVDSSGCFIAASAYEDRLALFSMSTSMTGSDIIDEYVEAGPLAHNIVEVPNSPGLAFLFRAGDVLLMDFRDPRNPLSVYKTCLNILPNAIEEQTYMDDSCKLHDLDVKA*