AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006377.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006377.01.T01 MTR_2g007210 97.573 206 5 0 32 237 1 206 1.29e-150 417
MsG0280006377.01.T01 MTR_8g088940 72.170 212 52 3 32 237 1 211 2.74e-102 295
MsG0280006377.01.T01 MTR_5g058140 69.519 187 55 1 51 237 28 212 2.38e-93 273
MsG0280006377.01.T01 MTR_3g072600 62.212 217 74 3 28 237 2 217 2.61e-93 273
MsG0280006377.01.T01 MTR_8g088980 75.159 157 38 1 82 237 6 162 1.13e-82 244
MsG0280006377.01.T01 MTR_4g082315 42.553 188 100 2 56 237 31 216 5.18e-55 176
MsG0280006377.01.T01 MTR_6g012770 38.889 198 112 3 47 237 17 212 1.52e-50 164
MsG0280006377.01.T01 MTR_7g011490 37.019 208 123 2 36 237 7 212 3.31e-48 158
MsG0280006377.01.T01 MTR_5g042260 35.885 209 127 5 36 237 11 219 8.15e-40 137
MsG0280006377.01.T01 MTR_5g042270 35.955 178 109 4 62 237 11 185 4.46e-32 115
MsG0280006377.01.T01 MTR_5g042320 33.175 211 131 6 36 237 14 223 1.67e-28 107
MsG0280006377.01.T01 MTR_5g042320 31.928 166 103 6 36 192 14 178 5.95e-16 73.9
MsG0280006377.01.T01 MTR_7g095690 24.138 203 144 4 36 233 7 204 2.08e-14 70.1
MsG0280006377.01.T01 MTR_5g042300 30.894 123 71 2 115 237 40 148 4.25e-14 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006377.01.T01 AT1G57620 63.462 208 75 1 31 237 5 212 9.78e-97 281
MsG0280006377.01.T01 AT1G09580 62.559 211 74 2 32 237 7 217 1.09e-96 281
MsG0280006377.01.T01 AT1G21900 62.687 201 72 3 40 237 16 216 2.48e-87 258
MsG0280006377.01.T01 AT3G10780 53.234 201 83 4 45 237 20 217 1.82e-64 200
MsG0280006377.01.T01 AT1G26690 38.462 208 123 3 35 237 7 214 2.97e-52 169
MsG0280006377.01.T01 AT1G14010 39.130 207 121 3 35 237 7 212 1.39e-50 164
MsG0280006377.01.T01 AT2G03290 38.503 187 110 1 56 237 27 213 3.69e-48 158
MsG0280006377.01.T01 AT1G69460 39.409 203 118 3 40 237 12 214 9.43e-48 157
MsG0280006377.01.T01 AT3G29070 37.173 191 116 2 51 237 35 225 2.25e-42 144
MsG0280006377.01.T01 AT2G03040 33.571 140 88 1 56 190 27 166 4.52e-27 102

Find 47 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAATCTTGATTGGAAAAT+TGG 0.188133 2:+1037493 MsG0280006377.01.T01:CDS
GGAACTACATTGCATGCTTC+TGG 0.224797 2:+1037437 MsG0280006377.01.T01:CDS
TCTAAATAAGCTTCTTCTTC+TGG 0.233829 2:-1038067 None:intergenic
TCAGAATAACGTTGTTGTTT+TGG 0.238420 2:+1036420 MsG0280006377.01.T01:CDS
CTATAGGGACAAATGGGTTT+TGG 0.278812 2:+1034686 None:intergenic
AAAGAAAGGTGAAGGTGTTA+TGG 0.315556 2:+1036291 MsG0280006377.01.T01:CDS
TCTCAGCATGTCATGCTATA+TGG 0.316253 2:+1036353 MsG0280006377.01.T01:CDS
TGGATCTCATTACCTGCTTC+AGG 0.363742 2:+1036373 MsG0280006377.01.T01:CDS
TATGGAGAAGAACATAGTTT+TGG 0.368348 2:+1036309 MsG0280006377.01.T01:CDS
TGAGAATTTGATACGTCTTA+AGG 0.387782 2:+1037810 MsG0280006377.01.T01:CDS
GAACTACATTGCATGCTTCT+GGG 0.396433 2:+1037438 MsG0280006377.01.T01:CDS
TTGGAGTTGCAGCCAAGGAT+TGG 0.411747 2:+1037512 MsG0280006377.01.T01:CDS
TGGAGTTGCAGCCAAGGATT+GGG 0.416172 2:+1037513 MsG0280006377.01.T01:CDS
AATTTCTTCAGAAACACATT+TGG 0.418353 2:-1036398 None:intergenic
CTTGAGTTGAGAAAGCTAGA+AGG 0.434730 2:+1037769 MsG0280006377.01.T01:CDS
ACACATTTGGTTCCTGAAGC+AGG 0.463623 2:-1036385 None:intergenic
GGCAGACCCTGACACTAAAA+CGG 0.468589 2:-1034724 None:intergenic
ATATTATTAATCAGGGAAGC+AGG 0.472514 2:+1037930 MsG0280006377.01.T01:intron
TGATGAATATTGTTTCCATA+TGG 0.476604 2:-1037364 None:intergenic
CCCACTCTCTGAAGTTGTAA+AGG 0.497252 2:-1037416 None:intergenic
TTCTGGGTTGCTCAGAATCA+TGG 0.499578 2:+1037454 MsG0280006377.01.T01:CDS
ATTTGATACGTCTTAAGGAC+AGG 0.501669 2:+1037815 MsG0280006377.01.T01:CDS
AGCAACTGAATCCCAATCCT+TGG 0.504479 2:-1037524 None:intergenic
ACATAATAATTTAGAGAGAG+AGG 0.517976 2:+1036245 MsG0280006377.01.T01:intron
ATGTCAGTATGAATCTTGAT+TGG 0.523723 2:+1037485 MsG0280006377.01.T01:CDS
GGTTGGTTTGATCGATCAAT+CGG 0.527885 2:-1036460 None:intergenic
CCTTTACAACTTCAGAGAGT+GGG 0.532604 2:+1037416 MsG0280006377.01.T01:CDS
AAAGAGAGAAAGAAAGGTGA+AGG 0.534864 2:+1036283 MsG0280006377.01.T01:CDS
GCAGACCCTGACACTAAAAC+GGG 0.536443 2:-1034723 None:intergenic
GAAAATTGGAGTTGCAGCCA+AGG 0.537415 2:+1037507 MsG0280006377.01.T01:CDS
GCCTTTACAACTTCAGAGAG+TGG 0.553325 2:+1037415 MsG0280006377.01.T01:CDS
TAATCAGGGAAGCAGGGATG+AGG 0.558277 2:+1037937 MsG0280006377.01.T01:intron
CATAATGAGAATGTTACAGT+TGG 0.579792 2:+1037385 MsG0280006377.01.T01:CDS
TAAGACGTATCAAATTCTCA+TGG 0.580213 2:-1037807 None:intergenic
CCTTGACAGACAAGGTGGGT+TGG 0.587584 2:-1036477 None:intergenic
TGAATCAACAAATGCAAGAG+TGG 0.591154 2:+1037968 MsG0280006377.01.T01:CDS
GAGAAAGCTAGAAGGATCAG+TGG 0.595148 2:+1037777 MsG0280006377.01.T01:CDS
GTTGCTCAGAATCATGGAGG+TGG 0.597042 2:+1037460 MsG0280006377.01.T01:CDS
TATTATTAATCAGGGAAGCA+GGG 0.610388 2:+1037931 MsG0280006377.01.T01:intron
CAACAAATGCAAGAGTGGCA+TGG 0.610619 2:+1037973 MsG0280006377.01.T01:CDS
CCAACCCACCTTGTCTGTCA+AGG 0.635683 2:+1036477 MsG0280006377.01.T01:CDS
TGCTAGAAAAGAAAAGATTG+AGG 0.649833 2:+1037543 MsG0280006377.01.T01:CDS
ATGTACCTTGACAGACAAGG+TGG 0.656190 2:-1036482 None:intergenic
AAAGCTAGAAGGATCAGTGG+AGG 0.667237 2:+1037780 MsG0280006377.01.T01:CDS
TGGGTTGCTCAGAATCATGG+AGG 0.682301 2:+1037457 MsG0280006377.01.T01:CDS
AAAATGTACCTTGACAGACA+AGG 0.703385 2:-1036485 None:intergenic
TGTACCTTGACAGACAAGGT+GGG 0.712167 2:-1036481 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCTTAACAAAAATATATT+AGG + Chr2:1036067-1036086 MsG0280006377.01.T01:intron 10.0%
!! GTTTGATAAATAATATTATA+TGG + Chr2:1035574-1035593 MsG0280006377.01.T01:intron 10.0%
!! TGAAATTTAATATTTAATCA+TGG + Chr2:1035264-1035283 MsG0280006377.01.T01:intron 10.0%
!!! AAAGATTTTAAAAATAGAAA+AGG + Chr2:1036032-1036051 MsG0280006377.01.T01:intron 10.0%
!!! AGAAAAGAATTTAATTTTTA+CGG + Chr2:1035601-1035620 MsG0280006377.01.T01:intron 10.0%
!!! TATTTTAATATAAATCAACA+TGG - Chr2:1035852-1035871 None:intergenic 10.0%
!! AAATAGAAAAGGAAAAATAA+TGG + Chr2:1036043-1036062 MsG0280006377.01.T01:intron 15.0%
!! AATAGTTAATAAGGATAATT+TGG - Chr2:1034926-1034945 None:intergenic 15.0%
!! AATTATCCTTATTAACTATT+TGG + Chr2:1034926-1034945 MsG0280006377.01.T01:intron 15.0%
!! TCTTATAATTAATGTTTCTT+TGG - Chr2:1036203-1036222 None:intergenic 15.0%
!!! AAAATTTTATTGAGTAAAAG+AGG - Chr2:1037872-1037891 None:intergenic 15.0%
!!! ATGGGTTTATTTTTTTTTTT+AGG + Chr2:1037333-1037352 MsG0280006377.01.T01:intron 15.0%
!!! ATTGAATTTGGATTTATTTT+GGG + Chr2:1035657-1035676 MsG0280006377.01.T01:intron 15.0%
!!! TATTGAATTTGGATTTATTT+TGG + Chr2:1035656-1035675 MsG0280006377.01.T01:intron 15.0%
!!! TTAATTTCATTATGTGTTTT+GGG + Chr2:1036619-1036638 MsG0280006377.01.T01:intron 15.0%
!!! TTTAATTTCATTATGTGTTT+TGG + Chr2:1036618-1036637 MsG0280006377.01.T01:intron 15.0%
!!! TTTTATTTAGTGAATTTCTT+TGG - Chr2:1035978-1035997 None:intergenic 15.0%
!!! TTTTGGTATATTATTAATCA+GGG + Chr2:1037923-1037942 MsG0280006377.01.T01:intron 15.0%
!!! TTTTTGGTATATTATTAATC+AGG + Chr2:1037922-1037941 MsG0280006377.01.T01:intron 15.0%
!! AAAAATAAAGAGAGAAAGAA+AGG + Chr2:1036277-1036296 MsG0280006377.01.T01:CDS 20.0%
!! AACTAACCAAATAGTTAATA+AGG - Chr2:1034935-1034954 None:intergenic 20.0%
!! AATGATTATAAGAAAGAGAA+TGG + Chr2:1034892-1034911 MsG0280006377.01.T01:intron 20.0%
!! ACAATCTATTGAATTGTAAT+TGG + Chr2:1037216-1037235 MsG0280006377.01.T01:intron 20.0%
!! ATGTCAAATATAAAGTCATT+TGG + Chr2:1037593-1037612 MsG0280006377.01.T01:intron 20.0%
!! CCAAATAATTCACATTATTA+TGG + Chr2:1035552-1035571 MsG0280006377.01.T01:intron 20.0%
!! CCATAATAATGTGAATTATT+TGG - Chr2:1035555-1035574 None:intergenic 20.0%
!!! AAGAATTTAATTTTTACGGA+CGG + Chr2:1035605-1035624 MsG0280006377.01.T01:intron 20.0%
!!! TAACAAAATCATAGTGATTT+TGG + Chr2:1037051-1037070 MsG0280006377.01.T01:intron 20.0%
!!! TTACTTTAAGACTAAAAATG+AGG + Chr2:1037110-1037129 MsG0280006377.01.T01:intron 20.0%
!!! TTCTTAAACAATGTTTTGAT+GGG - Chr2:1035337-1035356 None:intergenic 20.0%
!!! TTTCTTAAACAATGTTTTGA+TGG - Chr2:1035338-1035357 None:intergenic 20.0%
! AAAAATATATTAGGAGCAGA+AGG + Chr2:1036076-1036095 MsG0280006377.01.T01:intron 25.0%
! AACACACTACACTTAAAATA+AGG - Chr2:1037285-1037304 None:intergenic 25.0%
! AATTTCTTCAGAAACACATT+TGG - Chr2:1036401-1036420 None:intergenic 25.0%
! ACATAATAATTTAGAGAGAG+AGG + Chr2:1036245-1036264 MsG0280006377.01.T01:intron 25.0%
! ATGAATCTTGATTGGAAAAT+TGG + Chr2:1037493-1037512 MsG0280006377.01.T01:CDS 25.0%
! ATTCACTAAACAACATTACA+AGG + Chr2:1035420-1035439 MsG0280006377.01.T01:intron 25.0%
! ATTGAATTGTAATTGGAGAA+TGG + Chr2:1037223-1037242 MsG0280006377.01.T01:intron 25.0%
! CTATGAAAGAAAATGGAAAA+GGG - Chr2:1036539-1036558 None:intergenic 25.0%
! TAGAAGAAAAATATGAAGAG+AGG + Chr2:1035529-1035548 MsG0280006377.01.T01:intron 25.0%
! TCAACATGGTGATATTTAAT+TGG - Chr2:1035838-1035857 None:intergenic 25.0%
! TGATGAATATTGTTTCCATA+TGG - Chr2:1037367-1037386 None:intergenic 25.0%
! TGTGCATAGTATTAATTGAA+GGG + Chr2:1034979-1034998 MsG0280006377.01.T01:intron 25.0%
! TTAAACGTGATTGATGTTTA+GGG + Chr2:1037739-1037758 MsG0280006377.01.T01:intron 25.0%
! TTCTCCTTATGATACAATAA+AGG + Chr2:1036561-1036580 MsG0280006377.01.T01:intron 25.0%
! TTGATTATGTTAGTGCATTT+CGG + Chr2:1036690-1036709 MsG0280006377.01.T01:intron 25.0%
! TTGTATTGTTAGTGTATGTT+TGG + Chr2:1037014-1037033 MsG0280006377.01.T01:intron 25.0%
!!! AAATCGCTTTTGTAAAATCA+CGG + Chr2:1036930-1036949 MsG0280006377.01.T01:intron 25.0%
!!! ATGGTTTAGTTTTATGTCTT+TGG + Chr2:1037992-1038011 MsG0280006377.01.T01:CDS 25.0%
!!! TGGTTTAGTTTTATGTCTTT+GGG + Chr2:1037993-1038012 MsG0280006377.01.T01:CDS 25.0%
!!! TTCAAAATTAGTGTCGTTTT+AGG + Chr2:1034844-1034863 MsG0280006377.01.T01:intron 25.0%
AAATCCAAATTCAATACGTC+TGG - Chr2:1035652-1035671 None:intergenic 30.0%
ATATTATTAATCAGGGAAGC+AGG + Chr2:1037930-1037949 MsG0280006377.01.T01:intron 30.0%
ATGTCAGTATGAATCTTGAT+TGG + Chr2:1037485-1037504 MsG0280006377.01.T01:CDS 30.0%
CACTCCTTTATTGTATCATA+AGG - Chr2:1036568-1036587 None:intergenic 30.0%
CATAATGAGAATGTTACAGT+TGG + Chr2:1037385-1037404 MsG0280006377.01.T01:CDS 30.0%
CCTATGAAAGAAAATGGAAA+AGG - Chr2:1036540-1036559 None:intergenic 30.0%
GAGAAACCTATGAAAGAAAA+TGG - Chr2:1036546-1036565 None:intergenic 30.0%
GTGTGCATAGTATTAATTGA+AGG + Chr2:1034978-1034997 MsG0280006377.01.T01:intron 30.0%
GTTAAACGTGATTGATGTTT+AGG + Chr2:1037738-1037757 MsG0280006377.01.T01:intron 30.0%
TAAGACGTATCAAATTCTCA+TGG - Chr2:1037810-1037829 None:intergenic 30.0%
TAATAATGTAAGTGCGTGTT+TGG - Chr2:1037093-1037112 None:intergenic 30.0%
TACATTAACCTCGTATTAAG+AGG + Chr2:1035117-1035136 MsG0280006377.01.T01:intron 30.0%
TATCAAATCCTCTTAATACG+AGG - Chr2:1035128-1035147 None:intergenic 30.0%
TATTATTAATCAGGGAAGCA+GGG + Chr2:1037931-1037950 MsG0280006377.01.T01:intron 30.0%
TCTTCAATTATAACATGTCG+CGG + Chr2:1037159-1037178 MsG0280006377.01.T01:intron 30.0%
TGAGAATTTGATACGTCTTA+AGG + Chr2:1037810-1037829 MsG0280006377.01.T01:CDS 30.0%
TGAGTGTAAACTTAGTCAAA+TGG + Chr2:1034757-1034776 MsG0280006377.01.T01:intron 30.0%
TGATTATGTTAGTGCATTTC+GGG + Chr2:1036691-1036710 MsG0280006377.01.T01:intron 30.0%
TGCTAGAAAAGAAAAGATTG+AGG + Chr2:1037543-1037562 MsG0280006377.01.T01:CDS 30.0%
TGTAAGTTGTCCAAGATAAA+AGG + Chr2:1037641-1037660 MsG0280006377.01.T01:intron 30.0%
TTCTACCATCAAAACATCAT+AGG - Chr2:1036654-1036673 None:intergenic 30.0%
! CCTTGTCTAGAATTATCAAT+CGG - Chr2:1036592-1036611 None:intergenic 30.0%
! CCTTTTCCATTTTCTTTCAT+AGG + Chr2:1036537-1036556 MsG0280006377.01.T01:intron 30.0%
! CGATTGATAATTCTAGACAA+GGG + Chr2:1036590-1036609 MsG0280006377.01.T01:intron 30.0%
! CTTTCACTTACCTTTTATCT+TGG - Chr2:1037654-1037673 None:intergenic 30.0%
! GGATTCATGATTTTACATTG+CGG + Chr2:1036967-1036986 MsG0280006377.01.T01:intron 30.0%
! GGATTTGATAATTCGAAACT+CGG + Chr2:1035138-1035157 MsG0280006377.01.T01:intron 30.0%
! TATGGAGAAGAACATAGTTT+TGG + Chr2:1036309-1036328 MsG0280006377.01.T01:CDS 30.0%
!! AAGCGACACTCATTTTAAAA+CGG + Chr2:1035080-1035099 MsG0280006377.01.T01:intron 30.0%
!! ATCTATCTTGGTGTCATTAA+TGG + Chr2:1036799-1036818 MsG0280006377.01.T01:intron 30.0%
!!! CGCGTAGATTTTTTTTCAAT+CGG - Chr2:1035785-1035804 None:intergenic 30.0%
!!! GACACTAATTTTGAAACAGA+GGG - Chr2:1034839-1034858 None:intergenic 30.0%
!!! GATGTTTTGATGGTAGAATA+GGG + Chr2:1036656-1036675 MsG0280006377.01.T01:intron 30.0%
!!! GCGTAGATTTTTTTTCAATC+GGG - Chr2:1035784-1035803 None:intergenic 30.0%
!!! TCAGAATAACGTTGTTGTTT+TGG + Chr2:1036420-1036439 MsG0280006377.01.T01:CDS 30.0%
!!! TGATGTTTTGATGGTAGAAT+AGG + Chr2:1036655-1036674 MsG0280006377.01.T01:intron 30.0%
AAAATGTACCTTGACAGACA+AGG - Chr2:1036488-1036507 None:intergenic 35.0%
AAACACATTGTCATTGCATC+TGG + Chr2:1036764-1036783 MsG0280006377.01.T01:intron 35.0%
AAAGAGAGAAAGAAAGGTGA+AGG + Chr2:1036283-1036302 MsG0280006377.01.T01:CDS 35.0%
AATCACGGTTAACACAATTG+TGG + Chr2:1036945-1036964 MsG0280006377.01.T01:intron 35.0%
AGTTTACACTCACACTTGAT+AGG - Chr2:1034749-1034768 None:intergenic 35.0%
ATCACGGTTAACACAATTGT+GGG + Chr2:1036946-1036965 MsG0280006377.01.T01:intron 35.0%
ATTTGATACGTCTTAAGGAC+AGG + Chr2:1037815-1037834 MsG0280006377.01.T01:CDS 35.0%
CATTAATGGCCCAGATTTAA+TGG + Chr2:1036813-1036832 MsG0280006377.01.T01:intron 35.0%
CTTCAATTATAACATGTCGC+GGG + Chr2:1037160-1037179 MsG0280006377.01.T01:intron 35.0%
GAGACATTCGATCGTTAAAT+GGG + Chr2:1037315-1037334 MsG0280006377.01.T01:intron 35.0%
GCAAATAGAGATGTAGTTGT+TGG + Chr2:1036098-1036117 MsG0280006377.01.T01:intron 35.0%
GTTACCAGACGTATTGAATT+TGG + Chr2:1035645-1035664 MsG0280006377.01.T01:intron 35.0%
GTTTACACTCACACTTGATA+GGG - Chr2:1034748-1034767 None:intergenic 35.0%
TGAACTTATCGTGAAATGCA+CGG - Chr2:1036853-1036872 None:intergenic 35.0%
TGAATCAACAAATGCAAGAG+TGG + Chr2:1037968-1037987 MsG0280006377.01.T01:CDS 35.0%
TGAGACATTCGATCGTTAAA+TGG + Chr2:1037314-1037333 MsG0280006377.01.T01:intron 35.0%
TTAGTGTATGTTTGGATGAG+TGG + Chr2:1037022-1037041 MsG0280006377.01.T01:intron 35.0%
TTTAACGATCGAATGTCTCA+AGG - Chr2:1037314-1037333 None:intergenic 35.0%
TTTGTGTGACCCAGATTTAA+TGG - Chr2:1036747-1036766 None:intergenic 35.0%
! CCGATTGATAATTCTAGACA+AGG + Chr2:1036589-1036608 MsG0280006377.01.T01:intron 35.0%
! TTGATGGTAGAATAGGGTTT+AGG + Chr2:1036662-1036681 MsG0280006377.01.T01:intron 35.0%
!! AAAGAAAGGTGAAGGTGTTA+TGG + Chr2:1036291-1036310 MsG0280006377.01.T01:CDS 35.0%
!! ACTTTGGTGCCATTAAATCT+GGG - Chr2:1036825-1036844 None:intergenic 35.0%
!! TGTGACCTATGATGTTTTGA+TGG + Chr2:1036646-1036665 MsG0280006377.01.T01:intron 35.0%
!! TTTTAGGTGACATCACCATA+TGG + Chr2:1037349-1037368 MsG0280006377.01.T01:intron 35.0%
!!! CGACACTAATTTTGAAACAG+AGG - Chr2:1034840-1034859 None:intergenic 35.0%
!!! GACACTCATTTTAAAACGGA+TGG + Chr2:1035084-1035103 MsG0280006377.01.T01:intron 35.0%
ACCAAGATAGATGTGTTGTG+TGG - Chr2:1036791-1036810 None:intergenic 40.0%
ACCACACAACACATCTATCT+TGG + Chr2:1036787-1036806 MsG0280006377.01.T01:intron 40.0%
ATGGTAGAATAGGGTTTAGG+TGG + Chr2:1036665-1036684 MsG0280006377.01.T01:intron 40.0%
CCTTTACAACTTCAGAGAGT+GGG + Chr2:1037416-1037435 MsG0280006377.01.T01:CDS 40.0%
GAACTACATTGCATGCTTCT+GGG + Chr2:1037438-1037457 MsG0280006377.01.T01:CDS 40.0%
GAACTTATCGTGAAATGCAC+GGG - Chr2:1036852-1036871 None:intergenic 40.0%
GATAATTCGAAACTCGGTTG+AGG + Chr2:1035144-1035163 MsG0280006377.01.T01:intron 40.0%
TCTCAGCATGTCATGCTATA+TGG + Chr2:1036353-1036372 MsG0280006377.01.T01:CDS 40.0%
TGATAATTCTAGACAAGGGC+TGG + Chr2:1036594-1036613 MsG0280006377.01.T01:intron 40.0%
TGTCGCGGGAAATAAATTGT+CGG + Chr2:1037174-1037193 MsG0280006377.01.T01:intron 40.0%
! AGATGTAGTTGTTGGTCTCT+TGG + Chr2:1036106-1036125 MsG0280006377.01.T01:intron 40.0%
! CAGTTTCAGTTTTGCAGTTG+TGG + Chr2:1038027-1038046 MsG0280006377.01.T01:CDS 40.0%
! GACGGTAAGAGATCTTTTCT+TGG + Chr2:1035623-1035642 MsG0280006377.01.T01:intron 40.0%
! TAGCTTTTGCAAAACCGTTG+TGG - Chr2:1036892-1036911 None:intergenic 40.0%
!! CACTTTGGTGCCATTAAATC+TGG - Chr2:1036826-1036845 None:intergenic 40.0%
!! CTTGAGTTGAGAAAGCTAGA+AGG + Chr2:1037769-1037788 MsG0280006377.01.T01:CDS 40.0%
!! GGTTGGTTTGATCGATCAAT+CGG - Chr2:1036463-1036482 None:intergenic 40.0%
!! TAGCACTTTGGTGCCATTAA+TGG + Chr2:1036714-1036733 MsG0280006377.01.T01:intron 40.0%
AAAGCTAGAAGGATCAGTGG+AGG + Chr2:1037780-1037799 MsG0280006377.01.T01:CDS 45.0%
AGCAACTGAATCCCAATCCT+TGG - Chr2:1037527-1037546 None:intergenic 45.0%
ATGTACCTTGACAGACAAGG+TGG - Chr2:1036485-1036504 None:intergenic 45.0%
CAACAAATGCAAGAGTGGCA+TGG + Chr2:1037973-1037992 MsG0280006377.01.T01:CDS 45.0%
GAAAATTGGAGTTGCAGCCA+AGG + Chr2:1037507-1037526 MsG0280006377.01.T01:CDS 45.0%
GAGAAAGCTAGAAGGATCAG+TGG + Chr2:1037777-1037796 MsG0280006377.01.T01:CDS 45.0%
GCCTTTACAACTTCAGAGAG+TGG + Chr2:1037415-1037434 MsG0280006377.01.T01:CDS 45.0%
GGAACTACATTGCATGCTTC+TGG + Chr2:1037437-1037456 MsG0280006377.01.T01:CDS 45.0%
GTGACCCAGATTTAATGGCA+CGG - Chr2:1036742-1036761 None:intergenic 45.0%
TGGATCTCATTACCTGCTTC+AGG + Chr2:1036373-1036392 MsG0280006377.01.T01:CDS 45.0%
TGTACCTTGACAGACAAGGT+GGG - Chr2:1036484-1036503 None:intergenic 45.0%
TTCTGGGTTGCTCAGAATCA+TGG + Chr2:1037454-1037473 MsG0280006377.01.T01:CDS 45.0%
! ACACATTTGGTTCCTGAAGC+AGG - Chr2:1036388-1036407 None:intergenic 45.0%
! GTGCGTGTTTGGATTTTCGA+TGG - Chr2:1037082-1037101 None:intergenic 45.0%
!! CCCACTCTCTGAAGTTGTAA+AGG - Chr2:1037419-1037438 None:intergenic 45.0%
!! TAATGGCACGGTGCCATTAA+TGG - Chr2:1036730-1036749 None:intergenic 45.0%
!!! GTTATATATTAATTATTTTT+TGG + Chr2:1037906-1037925 MsG0280006377.01.T01:intron 5.0%
GAAATGCACGGGTAGCACTT+TGG - Chr2:1036841-1036860 None:intergenic 50.0%
GCAGACCCTGACACTAAAAC+GGG - Chr2:1034726-1034745 None:intergenic 50.0%
GGCAGACCCTGACACTAAAA+CGG - Chr2:1034727-1034746 None:intergenic 50.0%
GTTGCTCAGAATCATGGAGG+TGG + Chr2:1037460-1037479 MsG0280006377.01.T01:CDS 50.0%
TAATCAGGGAAGCAGGGATG+AGG + Chr2:1037937-1037956 MsG0280006377.01.T01:intron 50.0%
TGGAGTTGCAGCCAAGGATT+GGG + Chr2:1037513-1037532 MsG0280006377.01.T01:CDS 50.0%
TGGGTTGCTCAGAATCATGG+AGG + Chr2:1037457-1037476 MsG0280006377.01.T01:CDS 50.0%
TTGGAGTTGCAGCCAAGGAT+TGG + Chr2:1037512-1037531 MsG0280006377.01.T01:CDS 50.0%
! GGCACCGTGCCATTAAATCT+GGG + Chr2:1036735-1036754 MsG0280006377.01.T01:intron 50.0%
! GTGCATTTCGGGTAGCACTT+TGG + Chr2:1036702-1036721 MsG0280006377.01.T01:intron 50.0%
! GTGCTGTGTCGACATTGTGT+GGG + Chr2:1037132-1037151 MsG0280006377.01.T01:intron 50.0%
! TGGCACCGTGCCATTAAATC+TGG + Chr2:1036734-1036753 MsG0280006377.01.T01:intron 50.0%
!! ACACTGCCCGTTTTAGTGTC+AGG + Chr2:1034717-1034736 MsG0280006377.01.T01:CDS 50.0%
!! CACTGCCCGTTTTAGTGTCA+GGG + Chr2:1034718-1034737 MsG0280006377.01.T01:CDS 50.0%
AGAATCGCGACGAGCCACAA+CGG + Chr2:1036875-1036894 MsG0280006377.01.T01:intron 55.0%
CCAACCCACCTTGTCTGTCA+AGG + Chr2:1036477-1036496 MsG0280006377.01.T01:CDS 55.0%
CCTTGACAGACAAGGTGGGT+TGG - Chr2:1036480-1036499 None:intergenic 55.0%
! GGTGCTGTGTCGACATTGTG+TGG + Chr2:1037131-1037150 MsG0280006377.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr2 gene 1034698 1038088 1034698 ID=MsG0280006377.01;Name=MsG0280006377.01
Chr2 mRNA 1034698 1038088 1034698 ID=MsG0280006377.01.T01;Parent=MsG0280006377.01;Name=MsG0280006377.01.T01;_AED=0.38;_eAED=0.41;_QI=0|0|0|0.8|0.75|0.6|5|0|237
Chr2 exon 1034698 1034739 1034698 ID=MsG0280006377.01.T01:exon:1029;Parent=MsG0280006377.01.T01
Chr2 exon 1036259 1036498 1036259 ID=MsG0280006377.01.T01:exon:1030;Parent=MsG0280006377.01.T01
Chr2 exon 1037355 1037564 1037355 ID=MsG0280006377.01.T01:exon:1031;Parent=MsG0280006377.01.T01
Chr2 exon 1037760 1037836 1037760 ID=MsG0280006377.01.T01:exon:1032;Parent=MsG0280006377.01.T01
Chr2 exon 1037944 1038088 1037944 ID=MsG0280006377.01.T01:exon:1033;Parent=MsG0280006377.01.T01
Chr2 CDS 1034698 1034739 1034698 ID=MsG0280006377.01.T01:cds;Parent=MsG0280006377.01.T01
Chr2 CDS 1036259 1036498 1036259 ID=MsG0280006377.01.T01:cds;Parent=MsG0280006377.01.T01
Chr2 CDS 1037355 1037564 1037355 ID=MsG0280006377.01.T01:cds;Parent=MsG0280006377.01.T01
Chr2 CDS 1037760 1037836 1037760 ID=MsG0280006377.01.T01:cds;Parent=MsG0280006377.01.T01
Chr2 CDS 1037944 1038088 1037944 ID=MsG0280006377.01.T01:cds;Parent=MsG0280006377.01.T01
Gene Sequence

>MsG0280006377.01.T01

ATGGGTTTTGGAAACTACGACACTGCCCGTTTTAGTGTCAGGAGAGAGAGGATTTTATCAAAAAATAAAGAGAGAAAGAAAGGTGAAGGTGTTATGGAGAAGAACATAGTTTTGGCAGTATTGTTTTTGTACTTGTTCTCAGCATGTCATGCTATATGGATCTCATTACCTGCTTCAGGAACCAAATGTGTTTCTGAAGAAATTCAGAATAACGTTGTTGTTTTGGCTGATTATATTGTCTTACCGATTGATCGATCAAACCAACCCACCTTGTCTGTCAAGGTGACATCACCATATGGAAACAATATTCATCATAATGAGAATGTTACAGTTGGTAATTTCGCCTTTACAACTTCAGAGAGTGGGAACTACATTGCATGCTTCTGGGTTGCTCAGAATCATGGAGGTGGAGATGTCAGTATGAATCTTGATTGGAAAATTGGAGTTGCAGCCAAGGATTGGGATTCAGTTGCTAGAAAAGAAAAGATTGAGGGAGTAGAGCTTGAGTTGAGAAAGCTAGAAGGATCAGTGGAGGCTATCCATGAGAATTTGATACGTCTTAAGGACAGGGAAGCAGGGATGAGGACAGTGAGTGAATCAACAAATGCAAGAGTGGCATGGTTTAGTTTTATGTCTTTGGGTATTTGCATTGCAGTTTCAGTTTTGCAGTTGTGGCATTTGAAAAGATACTTCCAGAAGAAGAAGCTTATTTAG
Protein sequence

>MsG0280006377.01.T01

MGFGNYDTARFSVRRERILSKNKERKKGEGVMEKNIVLAVLFLYLFSACHAIWISLPASGTKCVSEEIQNNVVVLADYIVLPIDRSNQPTLSVKVTSPYGNNIHHNENVTVGNFAFTTSESGNYIACFWVAQNHGGGDVSMNLDWKIGVAAKDWDSVARKEKIEGVELELRKLEGSVEAIHENLIRLKDREAGMRTVSESTNARVAWFSFMSLGICIAVSVLQLWHLKRYFQKKKLI*