AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006719.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006719.01.T01 MTR_2g013580 64.609 486 46 6 176 541 474 953 0.0 556
MsG0280006719.01.T01 MTR_2g013580 62.069 290 37 3 1 217 107 396 7.23e-102 337
MsG0280006719.01.T01 MTR_4g078220 49.330 448 118 3 203 541 497 944 7.40e-125 402
MsG0280006719.01.T01 MTR_4g078220 42.509 287 89 4 1 211 97 383 1.96e-61 220
MsG0280006719.01.T01 MTR_2g090375 46.916 454 123 5 203 541 487 937 5.07e-117 380
MsG0280006719.01.T01 MTR_2g090375 34.722 288 106 5 1 211 91 373 2.87e-43 166
MsG0280006719.01.T01 MTR_3g096200 32.450 453 190 11 202 541 678 1127 4.13e-60 216
MsG0280006719.01.T01 MTR_3g096200 29.104 268 106 6 1 185 269 535 4.05e-25 110
MsG0280006719.01.T01 MTR_8g093630 29.447 506 222 13 166 541 637 1137 3.98e-53 195
MsG0280006719.01.T01 MTR_8g093630 35.227 176 72 3 1 135 273 447 2.69e-25 111
MsG0280006719.01.T01 MTR_8g093630 29.447 506 222 13 166 541 637 1137 6.84e-53 194
MsG0280006719.01.T01 MTR_8g093630 29.104 268 106 5 1 185 273 539 1.92e-25 112
MsG0280006719.01.T01 MTR_3g047390 30.417 480 229 12 161 541 638 1111 2.96e-52 192
MsG0280006719.01.T01 MTR_3g047390 41.414 99 57 1 37 135 352 449 4.23e-19 92.0
MsG0280006719.01.T01 MTR_1g116470 28.471 425 218 9 203 541 672 1096 4.81e-40 156
MsG0280006719.01.T01 MTR_1g116470 36.047 172 68 3 2 135 287 454 4.11e-23 104
MsG0280006719.01.T01 MTR_1g116470 27.842 431 218 9 203 541 672 1101 3.15e-39 154
MsG0280006719.01.T01 MTR_1g116470 36.047 172 68 3 2 135 287 454 4.12e-23 104
MsG0280006719.01.T01 MTR_3g075180 62.366 93 35 0 449 541 1019 1111 5.77e-30 125
MsG0280006719.01.T01 MTR_3g075180 36.628 172 67 4 2 135 300 467 3.81e-23 104
MsG0280006719.01.T01 MTR_3g075180 30.631 222 129 7 203 405 681 896 7.24e-18 88.2
MsG0280006719.01.T01 MTR_3g075180 62.366 93 35 0 449 541 1017 1109 6.08e-30 125
MsG0280006719.01.T01 MTR_3g075180 36.628 172 67 4 2 135 300 467 4.31e-23 104
MsG0280006719.01.T01 MTR_3g075180 30.631 222 129 7 203 405 681 896 7.28e-18 88.2
MsG0280006719.01.T01 MTR_2g061380 58.511 94 39 0 448 541 1032 1125 7.39e-30 125
MsG0280006719.01.T01 MTR_2g061380 38.095 168 62 3 13 139 275 441 9.26e-26 113
MsG0280006719.01.T01 MTR_2g061380 29.730 222 135 9 204 405 681 901 4.06e-17 85.9
MsG0280006719.01.T01 MTR_1g116370 59.574 94 38 0 448 541 1025 1118 7.72e-30 125
MsG0280006719.01.T01 MTR_1g116370 36.170 188 78 3 1 147 271 457 2.25e-27 118
MsG0280006719.01.T01 MTR_1g116370 28.479 309 140 11 204 447 673 965 8.14e-21 97.4
MsG0280006719.01.T01 MTR_7g005950 58.511 94 39 0 448 541 1041 1134 1.33e-28 121
MsG0280006719.01.T01 MTR_7g005950 37.079 178 70 3 1 137 268 444 2.88e-26 114
MsG0280006719.01.T01 MTR_7g005950 27.824 363 169 12 161 447 632 977 9.64e-25 109
MsG0280006719.01.T01 MTR_7g005950 58.511 94 39 0 448 541 1041 1134 1.34e-28 121
MsG0280006719.01.T01 MTR_7g005950 37.079 178 70 3 1 137 268 444 2.66e-26 114
MsG0280006719.01.T01 MTR_7g005950 27.824 363 169 12 161 447 632 977 1.17e-24 109
MsG0280006719.01.T01 MTR_2g072160 38.095 147 49 3 23 128 314 459 2.86e-23 105
MsG0280006719.01.T01 MTR_2g072160 25.551 454 219 15 204 541 705 1155 1.11e-22 103
MsG0280006719.01.T01 MTR_1g018820 46.667 60 31 1 94 153 10 68 4.29e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006719.01.T01 AT4G04970 49.778 450 115 3 203 541 498 947 3.26e-124 400
MsG0280006719.01.T01 AT4G04970 42.857 287 88 2 1 211 98 384 3.27e-63 225
MsG0280006719.01.T01 AT4G03550 46.652 448 129 4 203 541 507 953 4.09e-114 372
MsG0280006719.01.T01 AT4G03550 39.051 274 90 3 1 197 106 379 1.99e-55 202
MsG0280006719.01.T01 AT2G13680 32.579 442 189 13 203 541 681 1116 1.10e-56 206
MsG0280006719.01.T01 AT2G13680 33.728 169 70 3 1 128 271 438 4.17e-23 104
MsG0280006719.01.T01 AT5G36870 32.634 429 188 14 192 541 646 1052 1.55e-50 187
MsG0280006719.01.T01 AT5G36870 35.556 180 71 3 10 146 274 451 1.96e-21 99.8
MsG0280006719.01.T01 AT5G36870 32.634 429 188 14 192 541 646 1052 2.15e-50 187
MsG0280006719.01.T01 AT5G36870 35.556 180 71 3 10 146 274 451 1.94e-21 99.8
MsG0280006719.01.T01 AT5G36870 32.634 429 188 14 192 541 646 1052 2.15e-50 187
MsG0280006719.01.T01 AT5G36870 35.556 180 71 3 10 146 274 451 1.94e-21 99.8
MsG0280006719.01.T01 AT5G36870 32.634 429 188 14 192 541 654 1060 2.67e-50 187
MsG0280006719.01.T01 AT5G36870 35.556 180 71 3 10 146 282 459 2.14e-21 99.4
MsG0280006719.01.T01 AT5G36870 32.614 417 180 14 204 541 665 1059 2.89e-49 184
MsG0280006719.01.T01 AT5G36870 35.556 180 71 3 10 146 282 459 2.14e-21 99.4
MsG0280006719.01.T01 AT3G14570 28.635 447 194 11 204 541 726 1156 1.01e-45 173
MsG0280006719.01.T01 AT3G14570 33.918 171 66 4 6 135 295 459 3.42e-23 105
MsG0280006719.01.T01 AT3G07160 30.415 434 197 9 203 541 676 1099 2.51e-42 163
MsG0280006719.01.T01 AT3G07160 32.000 175 77 3 2 135 283 456 5.59e-19 91.7
MsG0280006719.01.T01 AT3G07160 30.415 434 197 9 203 541 678 1101 2.71e-42 163
MsG0280006719.01.T01 AT3G07160 32.000 175 77 3 2 135 283 456 5.60e-19 91.7
MsG0280006719.01.T01 AT3G07160 30.415 434 197 9 203 541 678 1101 2.71e-42 163
MsG0280006719.01.T01 AT3G07160 32.000 175 77 3 2 135 283 456 5.60e-19 91.7
MsG0280006719.01.T01 AT3G59100 67.033 91 30 0 451 541 729 819 3.16e-32 132
MsG0280006719.01.T01 AT3G59100 42.000 100 56 2 37 135 55 153 8.97e-21 97.4
MsG0280006719.01.T01 AT3G59100 28.992 238 150 6 190 410 369 604 1.05e-18 90.9
MsG0280006719.01.T01 AT3G59100 67.033 91 30 0 451 541 1026 1116 3.88e-32 132
MsG0280006719.01.T01 AT3G59100 42.000 100 56 2 37 135 352 450 7.20e-21 97.8
MsG0280006719.01.T01 AT3G59100 28.992 238 150 6 190 410 666 901 9.91e-19 90.9
MsG0280006719.01.T01 AT2G36850 62.766 94 35 0 448 541 1011 1104 2.23e-30 127
MsG0280006719.01.T01 AT2G36850 34.302 172 74 2 2 135 295 465 1.53e-22 103
MsG0280006719.01.T01 AT2G36850 29.825 228 131 8 203 410 678 896 1.56e-18 90.5
MsG0280006719.01.T01 AT1G06490 58.491 106 44 0 436 541 1021 1126 5.53e-30 126
MsG0280006719.01.T01 AT1G06490 36.076 158 61 2 17 135 302 458 9.33e-28 119
MsG0280006719.01.T01 AT1G06490 29.167 264 166 6 161 405 646 907 4.89e-20 95.1
MsG0280006719.01.T01 AT1G06490 58.491 106 44 0 436 541 1021 1126 5.76e-30 125
MsG0280006719.01.T01 AT1G06490 36.076 158 61 2 17 135 302 458 1.07e-27 119
MsG0280006719.01.T01 AT1G06490 29.167 264 166 6 161 405 646 907 4.73e-20 95.1
MsG0280006719.01.T01 AT5G13000 59.574 94 38 0 448 541 1040 1133 6.18e-30 125
MsG0280006719.01.T01 AT5G13000 37.079 178 70 3 1 137 268 444 4.53e-27 117
MsG0280006719.01.T01 AT5G13000 29.582 311 136 11 204 447 685 979 2.25e-22 102
MsG0280006719.01.T01 AT5G13000 59.574 94 38 0 448 541 1040 1133 7.17e-30 125
MsG0280006719.01.T01 AT5G13000 37.079 178 70 3 1 137 268 444 4.75e-27 117
MsG0280006719.01.T01 AT5G13000 29.582 311 136 11 204 447 685 979 2.01e-22 102
MsG0280006719.01.T01 AT2G31960 57.447 94 40 0 448 541 1031 1124 7.77e-29 122
MsG0280006719.01.T01 AT2G31960 38.636 176 66 3 1 135 264 438 1.82e-27 118
MsG0280006719.01.T01 AT2G31960 33.884 242 101 9 205 407 681 902 5.38e-22 101
MsG0280006719.01.T01 AT2G31960 57.447 94 40 0 448 541 1031 1124 7.77e-29 122
MsG0280006719.01.T01 AT2G31960 38.636 176 66 3 1 135 264 438 1.82e-27 118
MsG0280006719.01.T01 AT2G31960 33.884 242 101 9 205 407 681 902 5.38e-22 101
MsG0280006719.01.T01 AT2G31960 57.447 94 40 0 448 541 1031 1124 7.77e-29 122
MsG0280006719.01.T01 AT2G31960 38.636 176 66 3 1 135 264 438 1.82e-27 118
MsG0280006719.01.T01 AT2G31960 33.884 242 101 9 205 407 681 902 5.38e-22 101
MsG0280006719.01.T01 AT2G31960 57.447 94 40 0 448 541 1031 1124 7.77e-29 122
MsG0280006719.01.T01 AT2G31960 38.636 176 66 3 1 135 264 438 1.82e-27 118
MsG0280006719.01.T01 AT2G31960 33.884 242 101 9 205 407 681 902 5.38e-22 101
MsG0280006719.01.T01 AT2G31960 57.447 94 40 0 448 541 990 1083 8.23e-29 122
MsG0280006719.01.T01 AT2G31960 38.636 176 66 3 1 135 264 438 1.67e-27 118
MsG0280006719.01.T01 AT2G31960 33.884 242 101 9 205 407 640 861 5.35e-22 101
MsG0280006719.01.T01 AT1G05570 55.319 94 42 0 448 541 990 1083 5.19e-28 120
MsG0280006719.01.T01 AT1G05570 38.636 176 66 3 1 135 264 438 6.79e-28 119
MsG0280006719.01.T01 AT1G05570 32.911 237 110 8 205 407 640 861 7.87e-23 103
MsG0280006719.01.T01 AT1G05570 55.319 94 42 0 448 541 1031 1124 5.92e-28 119
MsG0280006719.01.T01 AT1G05570 38.636 176 66 3 1 135 264 438 7.82e-28 119
MsG0280006719.01.T01 AT1G05570 32.911 237 110 8 205 407 681 902 9.20e-23 103
MsG0280006719.01.T01 AT1G05570 55.319 94 42 0 448 541 1031 1124 5.92e-28 119
MsG0280006719.01.T01 AT1G05570 38.636 176 66 3 1 135 264 438 7.82e-28 119
MsG0280006719.01.T01 AT1G05570 32.911 237 110 8 205 407 681 902 9.20e-23 103
MsG0280006719.01.T01 AT1G05570 55.319 94 42 0 448 541 1031 1124 5.92e-28 119
MsG0280006719.01.T01 AT1G05570 38.636 176 66 3 1 135 264 438 7.82e-28 119
MsG0280006719.01.T01 AT1G05570 32.911 237 110 8 205 407 681 902 9.20e-23 103
MsG0280006719.01.T01 AT3G14570 33.918 171 66 4 6 135 295 459 3.84e-23 105
MsG0280006719.01.T01 AT3G14570 46.809 94 49 1 448 541 1074 1166 7.46e-22 100
MsG0280006719.01.T01 AT3G14570 27.365 296 137 8 204 436 710 990 6.28e-21 97.8
MsG0280006719.01.T01 AT3G14570 33.918 171 66 4 6 135 295 459 3.84e-23 105
MsG0280006719.01.T01 AT3G14570 46.809 94 49 1 448 541 1090 1182 7.61e-22 100
MsG0280006719.01.T01 AT3G14570 27.365 296 137 8 204 436 726 1006 6.46e-21 97.8

Find 117 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATCACTTGGGGTGGTCTT+AGG 0.156856 2:+5350060 MsG0280006719.01.T01:CDS
CCAACAGTTTCTGGTGAATA+TGG 0.177824 2:+5349654 MsG0280006719.01.T01:CDS
AAAACTTCCTCATCATAATA+TGG 0.217240 2:-5351742 None:intergenic
GGACTACACCTAAGGATAAT+AGG 0.233877 2:+5349858 MsG0280006719.01.T01:CDS
CTACCAGGTTTGCCTTAATA+TGG 0.238594 2:+5350931 MsG0280006719.01.T01:CDS
ATCTTAATAGTATTATAAAT+TGG 0.247749 2:-5349699 None:intergenic
GACGATGAATGGAACAATTA+TGG 0.252854 2:+5351838 MsG0280006719.01.T01:CDS
ACTTCATGGATTTGCAAATA+TGG 0.261119 2:+5350653 MsG0280006719.01.T01:CDS
TCCTCAGCATCGTTGCTTGC+TGG 0.267225 2:-5350824 None:intergenic
GATTATCTCATTCCATATTA+AGG 0.277256 2:-5350943 None:intergenic
AGCAATTTGGTGGCAGTTCC+AGG 0.282098 2:-5351013 None:intergenic
ACCCTAATGTCCCAGCAATT+TGG 0.291409 2:-5351026 None:intergenic
ATGAGATAATCATTACTTTC+AGG 0.295597 2:+5350955 MsG0280006719.01.T01:CDS
ACTTCCTGGTGCTCTTATCT+TGG 0.302901 2:+5349421 MsG0280006719.01.T01:CDS
CCTTTACCAGGCAGCTTAGA+AGG 0.313871 2:+5351566 MsG0280006719.01.T01:intron
TATGGCAAAAGAGCTTAATA+TGG 0.317096 2:+5349587 MsG0280006719.01.T01:CDS
CACCAAATTGCTGGGACATT+AGG 0.324704 2:+5351024 MsG0280006719.01.T01:CDS
ACCAAATTGCTGGGACATTA+GGG 0.326680 2:+5351025 MsG0280006719.01.T01:CDS
GCCTTATTCAAATCTTTGTT+TGG 0.331605 2:-5351378 None:intergenic
GATAATAGGGTTGGGAAAAC+TGG 0.332139 2:+5349872 MsG0280006719.01.T01:CDS
TGCTGGAACTCAATATAGTT+TGG 0.344107 2:+5350103 MsG0280006719.01.T01:CDS
GCCAAACAAAGATTTGAATA+AGG 0.346247 2:+5351377 MsG0280006719.01.T01:CDS
TATCACTTGGGGTGGTCTTA+GGG 0.350049 2:+5350061 MsG0280006719.01.T01:CDS
CTGTTGTGTGGTATACTTCA+TGG 0.362245 2:+5350639 MsG0280006719.01.T01:CDS
GAGCTTAATATGGTTCTTGA+TGG 0.374195 2:+5349597 MsG0280006719.01.T01:CDS
TTCTTCATAACTACACTTCC+TGG 0.374887 2:+5349407 MsG0280006719.01.T01:CDS
CTAAGGCTCTGTTGAAACTT+AGG 0.380219 2:+5350545 MsG0280006719.01.T01:CDS
TGGAACTGCCACCAAATTGC+TGG 0.380571 2:+5351015 MsG0280006719.01.T01:CDS
ACATCGGCGTCAAGCGCGTC+GGG 0.393180 2:-5349361 None:intergenic
AAACTTCCTCATCATAATAT+GGG 0.404547 2:-5351741 None:intergenic
GCATTGCACTGGCAAAGAAC+TGG 0.409657 2:-5350767 None:intergenic
GAAGTTGATAGTAGTAGAAA+TGG 0.427461 2:+5349723 MsG0280006719.01.T01:CDS
GGGTTTATTGATCCTGATAC+TGG 0.433562 2:+5349618 MsG0280006719.01.T01:CDS
CTTAGGGCATCAATTATAGA+TGG 0.436322 2:+5350562 MsG0280006719.01.T01:CDS
CTTCAATCTGTGCTTGATGC+TGG 0.459094 2:+5350086 MsG0280006719.01.T01:CDS
TGATCGAGAACTTGAGCTCC+TGG 0.459131 2:+5350995 MsG0280006719.01.T01:CDS
ATGAGTCTGACAGGTCACTA+TGG 0.459352 2:+5351120 MsG0280006719.01.T01:CDS
TTCCCAACCCTATTATCCTT+AGG 0.460712 2:-5349866 None:intergenic
GACTACACCTAAGGATAATA+GGG 0.461157 2:+5349859 MsG0280006719.01.T01:CDS
TGAGATAATCATTACTTTCA+GGG 0.462143 2:+5350956 MsG0280006719.01.T01:CDS
AAGTTTCAACAGAGCCTTAG+TGG 0.462844 2:-5350542 None:intergenic
TGTTGACTTTGTTTATCACT+TGG 0.464610 2:+5350048 MsG0280006719.01.T01:CDS
AGAAGATTTATGACGATGAA+TGG 0.468428 2:+5351827 MsG0280006719.01.T01:CDS
GTCACCTTAGCATGTAGCTC+TGG 0.471183 2:-5351330 None:intergenic
CACTGGCAAAGAACTGGAAT+CGG 0.472005 2:-5350761 None:intergenic
TTGAAATTACGATACGGACT+TGG 0.479450 2:+5350870 MsG0280006719.01.T01:CDS
TGGCTTAGAAGCTTCTCCTC+TGG 0.479540 2:-5350804 None:intergenic
GGTGTTTGAAGAAACTTAGA+TGG 0.482388 2:+5349808 MsG0280006719.01.T01:CDS
TAAGGCTCTGTTGAAACTTA+GGG 0.486175 2:+5350546 MsG0280006719.01.T01:CDS
ACATGCTAAGGTGACTGAAC+TGG 0.490222 2:+5351338 MsG0280006719.01.T01:CDS
TCAGTATCCTTGGCAAGCAT+TGG 0.492659 2:+5350002 MsG0280006719.01.T01:intron
AGCTGGAAAATGAGTCTGAC+AGG 0.501886 2:+5351111 MsG0280006719.01.T01:CDS
TTCTTCTCCAATGCTTGCCA+AGG 0.503471 2:-5350009 None:intergenic
CATGAAGTATACCACACAAC+AGG 0.504499 2:-5350638 None:intergenic
CACCTAAGGATAATAGGGTT+GGG 0.504672 2:+5349864 MsG0280006719.01.T01:CDS
GGTACTACGTGCTCTCAGTC+AGG 0.504821 2:+5351082 MsG0280006719.01.T01:CDS
GTTGACTTTGTTTATCACTT+GGG 0.504886 2:+5350049 MsG0280006719.01.T01:CDS
CAAGCCAAGTGGATGCTACC+AGG 0.516467 2:+5350916 MsG0280006719.01.T01:CDS
AGCTTAATATGGTTCTTGAT+GGG 0.516531 2:+5349598 MsG0280006719.01.T01:CDS
GGGAGGGTACTCAGTATCCT+TGG 0.517346 2:+5349992 MsG0280006719.01.T01:intron
ACCTCTTGTTGCTCCCACTA+AGG 0.520091 2:+5350528 MsG0280006719.01.T01:CDS
TCAAGCGCGTCGGGGATAGC+CGG 0.521733 2:-5349352 None:intergenic
GGAACTGCCACCAAATTGCT+GGG 0.531675 2:+5351016 MsG0280006719.01.T01:CDS
TCGTAATTTCAACCGATGGA+TGG 0.532302 2:-5350859 None:intergenic
ACACCTAAGGATAATAGGGT+TGG 0.536055 2:+5349863 MsG0280006719.01.T01:CDS
TTGACTTTGTTTATCACTTG+GGG 0.541920 2:+5350050 MsG0280006719.01.T01:CDS
GTCTCTTCGAAAAGAGAATG+AGG 0.549059 2:+5351777 MsG0280006719.01.T01:CDS
TGCTATGGTTACCTGTTGTG+TGG 0.549771 2:+5350627 MsG0280006719.01.T01:CDS
CAGATTGAACTGCATTGCAC+TGG 0.551697 2:-5350778 None:intergenic
AACATCGGCGTCAAGCGCGT+CGG 0.553870 2:-5349362 None:intergenic
GTAGTACCTCGTTGCTGAGA+AGG 0.560501 2:-5351067 None:intergenic
CGTTGAATCTTGAGGCTCGA+CGG 0.561125 2:+5351632 MsG0280006719.01.T01:CDS
CAATGTTCCGTTGAATCTTG+AGG 0.564086 2:+5351624 MsG0280006719.01.T01:CDS
TGGCAAGCATTGGAGAAGAA+AGG 0.564491 2:+5350012 MsG0280006719.01.T01:CDS
TAGTTTGGTTACTAGAGAGA+CGG 0.565708 2:+5350118 MsG0280006719.01.T01:CDS
AAGCTAGACTCAAAATTCAA+AGG 0.571863 2:-5349831 None:intergenic
GCGTCGGGGATAGCCGGAGG+AGG 0.572538 2:-5349346 None:intergenic
TCTCAGTCAGGCAAAAGAGC+TGG 0.575598 2:+5351094 MsG0280006719.01.T01:CDS
CGTATCGTAATTTCAACCGA+TGG 0.580333 2:-5350863 None:intergenic
GATGCGTCTTGAGCCTCCTC+CGG 0.580355 2:+5349333 None:intergenic
CTAATGTCCCAGCAATTTGG+TGG 0.581204 2:-5351023 None:intergenic
CCATATTCACCAGAAACTGT+TGG 0.581473 2:-5349654 None:intergenic
ATTCCATATTAAGGCAAACC+TGG 0.582212 2:-5350934 None:intergenic
ACTTTGTTTATCACTTGGGG+TGG 0.586238 2:+5350053 MsG0280006719.01.T01:CDS
CAAACCTGGTAGCATCCACT+TGG 0.588081 2:-5350920 None:intergenic
AGGTTCGTGATGCCATCCAT+CGG 0.593603 2:+5350847 MsG0280006719.01.T01:CDS
TGGTTACTAGAGAGACGGCT+TGG 0.594553 2:+5350123 MsG0280006719.01.T01:CDS
GCCTTAGTGGGAGCAACAAG+AGG 0.598283 2:-5350529 None:intergenic
TGTGCAAGAATGAGTATCGC+CGG 0.598927 2:+5351150 MsG0280006719.01.T01:CDS
GCAAGCAACGATGCTGAGGA+AGG 0.599703 2:+5350827 MsG0280006719.01.T01:CDS
GCTACCAGAGCTACATGCTA+AGG 0.599904 2:+5351326 MsG0280006719.01.T01:CDS
GCCAGCAAGCAACGATGCTG+AGG 0.604793 2:+5350823 MsG0280006719.01.T01:CDS
CTTCGAAAAGAGAATGAGGA+TGG 0.610341 2:+5351781 MsG0280006719.01.T01:CDS
AGTTTCAACAGAGCCTTAGT+GGG 0.614070 2:-5350541 None:intergenic
AAGACCAAGATAAGAGCACC+AGG 0.615249 2:-5349425 None:intergenic
GTAAAGCACCACATTCTGCA+TGG 0.616520 2:+5349745 MsG0280006719.01.T01:CDS
ACTAGAGAGACGGCTTGGCG+TGG 0.616523 2:+5350128 MsG0280006719.01.T01:CDS
TAATTCCTCCATGCAGAATG+TGG 0.618995 2:-5349753 None:intergenic
AGTTATGAAGAAGCTTTCGT+CGG 0.622335 2:-5349396 None:intergenic
AGCGCGTCGGGGATAGCCGG+AGG 0.626098 2:-5349349 None:intergenic
AAACAACTGCCACTCTGTGT+TGG 0.632479 2:-5350604 None:intergenic
CATCGGTTGAAATTACGATA+CGG 0.632522 2:+5350864 MsG0280006719.01.T01:CDS
TTTGACCCCATATTATGATG+AGG 0.634455 2:+5351735 MsG0280006719.01.T01:CDS
AACTTCCTCATCATAATATG+GGG 0.646304 2:-5351740 None:intergenic
CGTCGAGCCTCAAGATTCAA+CGG 0.649398 2:-5351631 None:intergenic
AAACTGGCTATGTTGAACAA+AGG 0.659814 2:+5349888 MsG0280006719.01.T01:CDS
TCGGAAACGTTGTAGAACAT+CGG 0.662720 2:-5349377 None:intergenic
GGGACATTAGGGTAATTCGA+TGG 0.663090 2:+5351036 MsG0280006719.01.T01:CDS
TGAATCTTGAGGCTCGACGG+CGG 0.670263 2:+5351635 MsG0280006719.01.T01:CDS
CATCGGCGTCAAGCGCGTCG+GGG 0.670369 2:-5349360 None:intergenic
TCAATAACACCAACACAGAG+TGG 0.683775 2:+5350595 MsG0280006719.01.T01:CDS
GCAGTTCAATCTGATGCCAG+AGG 0.688974 2:+5350788 MsG0280006719.01.T01:CDS
AAGCTTCAATGACAGCACAC+CGG 0.704185 2:-5351169 None:intergenic
GATAATCATTACTTTCAGGG+AGG 0.708279 2:+5350959 MsG0280006719.01.T01:CDS
GTGTTTCCTTCTCAGCAACG+AGG 0.712063 2:+5351061 MsG0280006719.01.T01:CDS
TCGTTGCTGAGAAGGAAACA+CGG 0.723401 2:-5351059 None:intergenic
AAGCACCACATTCTGCATGG+AGG 0.732151 2:+5349748 MsG0280006719.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTTAATAGTATTATAAAT+TGG - Chr2:5349702-5349721 None:intergenic 10.0%
!!! TTGTTATATTTATCATTTTA+TGG + Chr2:5349569-5349588 MsG0280006719.01.T01:CDS 10.0%
!! AATATTTATAAGAGTTTGAT+AGG + Chr2:5349920-5349939 MsG0280006719.01.T01:intron 15.0%
!!! ATGATATAAATGAGTATTTT+TGG + Chr2:5349778-5349797 MsG0280006719.01.T01:CDS 15.0%
! AAAACTTCCTCATCATAATA+TGG - Chr2:5351745-5351764 None:intergenic 25.0%
! AAACTTCCTCATCATAATAT+GGG - Chr2:5351744-5351763 None:intergenic 25.0%
! ATAAGAGTTTGATAGGTTAT+GGG + Chr2:5349927-5349946 MsG0280006719.01.T01:intron 25.0%
! ATGAGATAATCATTACTTTC+AGG + Chr2:5350955-5350974 MsG0280006719.01.T01:CDS 25.0%
! CATTGTGACTAATATATTCA+GGG + Chr2:5351249-5351268 MsG0280006719.01.T01:intron 25.0%
! GATTATCTCATTCCATATTA+AGG - Chr2:5350946-5350965 None:intergenic 25.0%
! TATAAGAGTTTGATAGGTTA+TGG + Chr2:5349926-5349945 MsG0280006719.01.T01:intron 25.0%
! TGAGATAATCATTACTTTCA+GGG + Chr2:5350956-5350975 MsG0280006719.01.T01:CDS 25.0%
!! CTTGATTCAATTTTTGTGAA+GGG - Chr2:5350900-5350919 None:intergenic 25.0%
!! GTTTCGCTTTATTCTAATTT+GGG + Chr2:5349511-5349530 MsG0280006719.01.T01:intron 25.0%
!! TGTTTCGCTTTATTCTAATT+TGG + Chr2:5349510-5349529 MsG0280006719.01.T01:intron 25.0%
!! TTCGATTTTCTCTTCTTTAT+TGG + Chr2:5350678-5350697 MsG0280006719.01.T01:intron 25.0%
!! TTTCGCTTTATTCTAATTTG+GGG + Chr2:5349512-5349531 MsG0280006719.01.T01:intron 25.0%
!!! AATTTTGAGTCTAGCTTTTT+GGG + Chr2:5349837-5349856 MsG0280006719.01.T01:CDS 25.0%
!!! TAAATGAGTATTTTTGGAGT+AGG + Chr2:5349784-5349803 MsG0280006719.01.T01:CDS 25.0%
AAAAATTGAATCAAGCCAAG+TGG + Chr2:5350905-5350924 MsG0280006719.01.T01:CDS 30.0%
AACTTCCTCATCATAATATG+GGG - Chr2:5351743-5351762 None:intergenic 30.0%
AAGCTAGACTCAAAATTCAA+AGG - Chr2:5349834-5349853 None:intergenic 30.0%
ACTTCATGGATTTGCAAATA+TGG + Chr2:5350653-5350672 MsG0280006719.01.T01:CDS 30.0%
AGAAGATTTATGACGATGAA+TGG + Chr2:5351827-5351846 MsG0280006719.01.T01:CDS 30.0%
AGCTTAATATGGTTCTTGAT+GGG + Chr2:5349598-5349617 MsG0280006719.01.T01:CDS 30.0%
CCATTGTGACTAATATATTC+AGG + Chr2:5351248-5351267 MsG0280006719.01.T01:intron 30.0%
CCTGAATATATTAGTCACAA+TGG - Chr2:5351251-5351270 None:intergenic 30.0%
CTCAATGAAATTCGTATACA+AGG - Chr2:5350348-5350367 None:intergenic 30.0%
CTTGTATACGAATTTCATTG+AGG + Chr2:5350346-5350365 MsG0280006719.01.T01:intron 30.0%
GCCAAACAAAGATTTGAATA+AGG + Chr2:5351377-5351396 MsG0280006719.01.T01:CDS 30.0%
TATGGCAAAAGAGCTTAATA+TGG + Chr2:5349587-5349606 MsG0280006719.01.T01:CDS 30.0%
TCCCTATGTTGAAAAAATGA+TGG + Chr2:5351702-5351721 MsG0280006719.01.T01:CDS 30.0%
TCGAATACACAATTCATACA+AGG - Chr2:5351421-5351440 None:intergenic 30.0%
! ATGTTGAACAAAGGTCATTT+TGG + Chr2:5349897-5349916 MsG0280006719.01.T01:intron 30.0%
! GATTTTCTCTTCTTTATTGG+TGG + Chr2:5350681-5350700 MsG0280006719.01.T01:intron 30.0%
! GCCTTATTCAAATCTTTGTT+TGG - Chr2:5351381-5351400 None:intergenic 30.0%
! GCTTGATTCAATTTTTGTGA+AGG - Chr2:5350901-5350920 None:intergenic 30.0%
! GTGTATTCGAAGATTTTCAA+AGG + Chr2:5351431-5351450 MsG0280006719.01.T01:intron 30.0%
! GTTGACTTTGTTTATCACTT+GGG + Chr2:5350049-5350068 MsG0280006719.01.T01:CDS 30.0%
! TTGACTTTGTTTATCACTTG+GGG + Chr2:5350050-5350069 MsG0280006719.01.T01:CDS 30.0%
!! GAAGTTGATAGTAGTAGAAA+TGG + Chr2:5349723-5349742 MsG0280006719.01.T01:CDS 30.0%
!! GTATGATCTCAAAGTTGATA+AGG + Chr2:5351216-5351235 MsG0280006719.01.T01:intron 30.0%
!! TGTTGACTTTGTTTATCACT+TGG + Chr2:5350048-5350067 MsG0280006719.01.T01:CDS 30.0%
!!! AGCCATCATTTTTTCAACAT+AGG - Chr2:5351707-5351726 None:intergenic 30.0%
!!! ATGTTGATTTTGTTCATGCA+AGG + Chr2:5349952-5349971 MsG0280006719.01.T01:intron 30.0%
!!! GAATTTTGAGTCTAGCTTTT+TGG + Chr2:5349836-5349855 MsG0280006719.01.T01:CDS 30.0%
!!! GCCATCATTTTTTCAACATA+GGG - Chr2:5351706-5351725 None:intergenic 30.0%
AAACTGGCTATGTTGAACAA+AGG + Chr2:5349888-5349907 MsG0280006719.01.T01:CDS 35.0%
AGTTATGAAGAAGCTTTCGT+CGG - Chr2:5349399-5349418 None:intergenic 35.0%
ATTCCATATTAAGGCAAACC+TGG - Chr2:5350937-5350956 None:intergenic 35.0%
ATTTCATTGAGGAATCAGAC+TGG + Chr2:5350357-5350376 MsG0280006719.01.T01:intron 35.0%
GACGATGAATGGAACAATTA+TGG + Chr2:5351838-5351857 MsG0280006719.01.T01:CDS 35.0%
GACTACACCTAAGGATAATA+GGG + Chr2:5349859-5349878 MsG0280006719.01.T01:CDS 35.0%
GAGCTTAATATGGTTCTTGA+TGG + Chr2:5349597-5349616 MsG0280006719.01.T01:CDS 35.0%
GATAATCATTACTTTCAGGG+AGG + Chr2:5350959-5350978 MsG0280006719.01.T01:CDS 35.0%
GGCTTATTAGGATAAAGTGA+AGG + Chr2:5350444-5350463 MsG0280006719.01.T01:intron 35.0%
GGTGTTTGAAGAAACTTAGA+TGG + Chr2:5349808-5349827 MsG0280006719.01.T01:CDS 35.0%
TAAGGCTCTGTTGAAACTTA+GGG + Chr2:5350546-5350565 MsG0280006719.01.T01:CDS 35.0%
TAGTTTGGTTACTAGAGAGA+CGG + Chr2:5350118-5350137 MsG0280006719.01.T01:CDS 35.0%
TGCTGGAACTCAATATAGTT+TGG + Chr2:5350103-5350122 MsG0280006719.01.T01:CDS 35.0%
TTCTTCATAACTACACTTCC+TGG + Chr2:5349407-5349426 MsG0280006719.01.T01:CDS 35.0%
TTGAAATTACGATACGGACT+TGG + Chr2:5350870-5350889 MsG0280006719.01.T01:CDS 35.0%
TTTCATTGAGGAATCAGACT+GGG + Chr2:5350358-5350377 MsG0280006719.01.T01:intron 35.0%
TTTGACCCCATATTATGATG+AGG + Chr2:5351735-5351754 MsG0280006719.01.T01:CDS 35.0%
! ATTGGTCTGTTCTCACATTT+GGG + Chr2:5350708-5350727 MsG0280006719.01.T01:intron 35.0%
! CATCGGTTGAAATTACGATA+CGG + Chr2:5350864-5350883 MsG0280006719.01.T01:CDS 35.0%
! CTTAGGGCATCAATTATAGA+TGG + Chr2:5350562-5350581 MsG0280006719.01.T01:CDS 35.0%
! GTTTCATACCGGATTTTTGT+GGG + Chr2:5350404-5350423 MsG0280006719.01.T01:intron 35.0%
! TAAACGAAATTGGTCTGATG+CGG + Chr2:5350240-5350259 MsG0280006719.01.T01:intron 35.0%
! TAAAGTGAAGGTCAGTTTTC+TGG + Chr2:5350456-5350475 MsG0280006719.01.T01:intron 35.0%
!! AAAAATGGACTACCAGTATC+AGG - Chr2:5349633-5349652 None:intergenic 35.0%
!! AAGGTGCTATTATTGTTGCT+TGG + Chr2:5349971-5349990 MsG0280006719.01.T01:intron 35.0%
!! AGAAGGGTTCTAAACGAAAT+TGG + Chr2:5350230-5350249 MsG0280006719.01.T01:intron 35.0%
!! AGGTGCTATTATTGTTGCTT+GGG + Chr2:5349972-5349991 MsG0280006719.01.T01:intron 35.0%
!! AGTTTTCTGGATTGGAGTAT+TGG + Chr2:5350469-5350488 MsG0280006719.01.T01:intron 35.0%
!! ATAACGTGGACTGTTTTGTT+TGG + Chr2:5350181-5350200 MsG0280006719.01.T01:intron 35.0%
!! GGATTGATTTGGATTGAGAA+GGG + Chr2:5350214-5350233 MsG0280006719.01.T01:intron 35.0%
!! GGGTGTTTTATGGATTGATT+TGG + Chr2:5350203-5350222 MsG0280006719.01.T01:intron 35.0%
!! TGGATTGATTTGGATTGAGA+AGG + Chr2:5350213-5350232 MsG0280006719.01.T01:intron 35.0%
!!! ATGAGTATTTTTGGAGTAGG+AGG + Chr2:5349787-5349806 MsG0280006719.01.T01:CDS 35.0%
!!! GTTTTGTTTGGGGTGTTTTA+TGG + Chr2:5350193-5350212 MsG0280006719.01.T01:intron 35.0%
!!! TAACGTGGACTGTTTTGTTT+GGG + Chr2:5350182-5350201 MsG0280006719.01.T01:intron 35.0%
!!! TTTTTTCAACATAGGGAGCA+CGG - Chr2:5351699-5351718 None:intergenic 35.0%
AAGTTTCAACAGAGCCTTAG+TGG - Chr2:5350545-5350564 None:intergenic 40.0%
ACACCTAAGGATAATAGGGT+TGG + Chr2:5349863-5349882 MsG0280006719.01.T01:CDS 40.0%
ACATAGACTACTGCATTCAG+CGG + Chr2:5351272-5351291 MsG0280006719.01.T01:intron 40.0%
ACCAAATTGCTGGGACATTA+GGG + Chr2:5351025-5351044 MsG0280006719.01.T01:CDS 40.0%
AGCTATTGAGTTTCTGATGC+CGG + Chr2:5351535-5351554 MsG0280006719.01.T01:intron 40.0%
AGTTTCAACAGAGCCTTAGT+GGG - Chr2:5350544-5350563 None:intergenic 40.0%
ATCAGACTGGGATAGTATAC+TGG + Chr2:5350370-5350389 MsG0280006719.01.T01:intron 40.0%
CAATGTTCCGTTGAATCTTG+AGG + Chr2:5351624-5351643 MsG0280006719.01.T01:CDS 40.0%
CACCTAAGGATAATAGGGTT+GGG + Chr2:5349864-5349883 MsG0280006719.01.T01:CDS 40.0%
CATGAAGTATACCACACAAC+AGG - Chr2:5350641-5350660 None:intergenic 40.0%
CCAGAAACTGTTGGCAAAAA+TGG - Chr2:5349648-5349667 None:intergenic 40.0%
CCATATTCACCAGAAACTGT+TGG - Chr2:5349657-5349676 None:intergenic 40.0%
CGTATCGTAATTTCAACCGA+TGG - Chr2:5350866-5350885 None:intergenic 40.0%
CTAAGGCTCTGTTGAAACTT+AGG + Chr2:5350545-5350564 MsG0280006719.01.T01:CDS 40.0%
CTACCAGGTTTGCCTTAATA+TGG + Chr2:5350931-5350950 MsG0280006719.01.T01:CDS 40.0%
CTGTTGTGTGGTATACTTCA+TGG + Chr2:5350639-5350658 MsG0280006719.01.T01:CDS 40.0%
CTTCGAAAAGAGAATGAGGA+TGG + Chr2:5351781-5351800 MsG0280006719.01.T01:CDS 40.0%
GATAATAGGGTTGGGAAAAC+TGG + Chr2:5349872-5349891 MsG0280006719.01.T01:CDS 40.0%
GCTTCTATTACCAGAGATGT+TGG + Chr2:5350302-5350321 MsG0280006719.01.T01:intron 40.0%
GGACTACACCTAAGGATAAT+AGG + Chr2:5349858-5349877 MsG0280006719.01.T01:CDS 40.0%
GGGTTTATTGATCCTGATAC+TGG + Chr2:5349618-5349637 MsG0280006719.01.T01:CDS 40.0%
GTCTCTTCGAAAAGAGAATG+AGG + Chr2:5351777-5351796 MsG0280006719.01.T01:CDS 40.0%
TAATTCCTCCATGCAGAATG+TGG - Chr2:5349756-5349775 None:intergenic 40.0%
TACAAGGTCCAACAACAGAA+GGG + Chr2:5351496-5351515 MsG0280006719.01.T01:intron 40.0%
TCAATAACACCAACACAGAG+TGG + Chr2:5350595-5350614 MsG0280006719.01.T01:CDS 40.0%
TCGGAAACGTTGTAGAACAT+CGG - Chr2:5349380-5349399 None:intergenic 40.0%
TCGTAATTTCAACCGATGGA+TGG - Chr2:5350862-5350881 None:intergenic 40.0%
TCTCACATTTGGGTGAAATC+CGG + Chr2:5350718-5350737 MsG0280006719.01.T01:intron 40.0%
TTCCCAACCCTATTATCCTT+AGG - Chr2:5349869-5349888 None:intergenic 40.0%
TTGACATGGTGGTTTCATAC+CGG + Chr2:5350393-5350412 MsG0280006719.01.T01:intron 40.0%
! ACTTTGTTTATCACTTGGGG+TGG + Chr2:5350053-5350072 MsG0280006719.01.T01:CDS 40.0%
! ATTCTAATTTGGGGTGAAGC+TGG + Chr2:5349521-5349540 MsG0280006719.01.T01:intron 40.0%
! GCTATTATTGTTGCTTGGGA+GGG + Chr2:5349976-5349995 MsG0280006719.01.T01:intron 40.0%
! GGATAGTATACTGGTTGACA+TGG + Chr2:5350379-5350398 MsG0280006719.01.T01:intron 40.0%
! GGTTTCATACCGGATTTTTG+TGG + Chr2:5350403-5350422 MsG0280006719.01.T01:intron 40.0%
! TAGTATACTGGTTGACATGG+TGG + Chr2:5350382-5350401 MsG0280006719.01.T01:intron 40.0%
! TGAAGGTCAGTTTTCTGGAT+TGG + Chr2:5350461-5350480 MsG0280006719.01.T01:intron 40.0%
! TGCTATTATTGTTGCTTGGG+AGG + Chr2:5349975-5349994 MsG0280006719.01.T01:intron 40.0%
! TTCTTTATTGGTGGCACGAT+TGG + Chr2:5350690-5350709 MsG0280006719.01.T01:intron 40.0%
!! CCAACAGTTTCTGGTGAATA+TGG + Chr2:5349654-5349673 MsG0280006719.01.T01:CDS 40.0%
!! CCATTTTTGCCAACAGTTTC+TGG + Chr2:5349645-5349664 MsG0280006719.01.T01:CDS 40.0%
!! GATTGGTCTGTTCTCACATT+TGG + Chr2:5350707-5350726 MsG0280006719.01.T01:intron 40.0%
!! TTTTTCAACATAGGGAGCAC+GGG - Chr2:5351698-5351717 None:intergenic 40.0%
!!! AACGTGGACTGTTTTGTTTG+GGG + Chr2:5350183-5350202 MsG0280006719.01.T01:intron 40.0%
AAACAACTGCCACTCTGTGT+TGG - Chr2:5350607-5350626 None:intergenic 45.0%
AAGCTTCAATGACAGCACAC+CGG - Chr2:5351172-5351191 None:intergenic 45.0%
ACAAGGTCCAACAACAGAAG+GGG + Chr2:5351497-5351516 MsG0280006719.01.T01:intron 45.0%
ACATGCTAAGGTGACTGAAC+TGG + Chr2:5351338-5351357 MsG0280006719.01.T01:CDS 45.0%
ACCCTAATGTCCCAGCAATT+TGG - Chr2:5351029-5351048 None:intergenic 45.0%
ACTTCCTGGTGCTCTTATCT+TGG + Chr2:5349421-5349440 MsG0280006719.01.T01:CDS 45.0%
AGCTGGAAAATGAGTCTGAC+AGG + Chr2:5351111-5351130 MsG0280006719.01.T01:CDS 45.0%
AGTACACATGCCAACATCTC+TGG - Chr2:5350315-5350334 None:intergenic 45.0%
ATAGACTACTGCATTCAGCG+GGG + Chr2:5351274-5351293 MsG0280006719.01.T01:intron 45.0%
ATGAGTCTGACAGGTCACTA+TGG + Chr2:5351120-5351139 MsG0280006719.01.T01:CDS 45.0%
CACCAAATTGCTGGGACATT+AGG + Chr2:5351024-5351043 MsG0280006719.01.T01:CDS 45.0%
CACTGGCAAAGAACTGGAAT+CGG - Chr2:5350764-5350783 None:intergenic 45.0%
CAGATTGAACTGCATTGCAC+TGG - Chr2:5350781-5350800 None:intergenic 45.0%
CATAGACTACTGCATTCAGC+GGG + Chr2:5351273-5351292 MsG0280006719.01.T01:intron 45.0%
CTAATGTCCCAGCAATTTGG+TGG - Chr2:5351026-5351045 None:intergenic 45.0%
CTACAAGGTCCAACAACAGA+AGG + Chr2:5351495-5351514 MsG0280006719.01.T01:intron 45.0%
CTTCAATCTGTGCTTGATGC+TGG + Chr2:5350086-5350105 MsG0280006719.01.T01:CDS 45.0%
GCCTGAGTTGTGAGATATTC+CGG - Chr2:5350740-5350759 None:intergenic 45.0%
GGGACATTAGGGTAATTCGA+TGG + Chr2:5351036-5351055 MsG0280006719.01.T01:CDS 45.0%
GTGTGAGACAAGGGCTTATT+AGG + Chr2:5350432-5350451 MsG0280006719.01.T01:intron 45.0%
TCAGTATCCTTGGCAAGCAT+TGG + Chr2:5350002-5350021 MsG0280006719.01.T01:intron 45.0%
TCCGGAATATCTCACAACTC+AGG + Chr2:5350736-5350755 MsG0280006719.01.T01:intron 45.0%
TCGTTGCTGAGAAGGAAACA+CGG - Chr2:5351062-5351081 None:intergenic 45.0%
TGCTATGGTTACCTGTTGTG+TGG + Chr2:5350627-5350646 MsG0280006719.01.T01:CDS 45.0%
TTATCACTTGGGGTGGTCTT+AGG + Chr2:5350060-5350079 MsG0280006719.01.T01:CDS 45.0%
TTCTTCTCCAATGCTTGCCA+AGG - Chr2:5350012-5350031 None:intergenic 45.0%
! ATACCGGATTTTTGTGGGTC+GGG + Chr2:5350409-5350428 MsG0280006719.01.T01:intron 45.0%
! CATACCGGATTTTTGTGGGT+CGG + Chr2:5350408-5350427 MsG0280006719.01.T01:intron 45.0%
! GTAAAGCACCACATTCTGCA+TGG + Chr2:5349745-5349764 MsG0280006719.01.T01:CDS 45.0%
! TATCACTTGGGGTGGTCTTA+GGG + Chr2:5350061-5350080 MsG0280006719.01.T01:CDS 45.0%
! TGTGCAAGAATGAGTATCGC+CGG + Chr2:5351150-5351169 MsG0280006719.01.T01:CDS 45.0%
!! AAGACCAAGATAAGAGCACC+AGG - Chr2:5349428-5349447 None:intergenic 45.0%
!! GAGTGGCAGTTGTTTTGCTA+TGG + Chr2:5350612-5350631 MsG0280006719.01.T01:CDS 45.0%
!! TGGCAAGCATTGGAGAAGAA+AGG + Chr2:5350012-5350031 MsG0280006719.01.T01:CDS 45.0%
!! TTTTCAACATAGGGAGCACG+GGG - Chr2:5351697-5351716 None:intergenic 45.0%
!!! GCTTTTTGGGACTACACCTA+AGG + Chr2:5349850-5349869 MsG0280006719.01.T01:CDS 45.0%
AAGCAACTCGCGACGAAGAT+CGG - Chr2:5349488-5349507 None:intergenic 50.0%
AAGCACCACATTCTGCATGG+AGG + Chr2:5349748-5349767 MsG0280006719.01.T01:CDS 50.0%
ACCTCTTGTTGCTCCCACTA+AGG + Chr2:5350528-5350547 MsG0280006719.01.T01:CDS 50.0%
AGACAACCTTCTAAGCTGCC+TGG - Chr2:5351575-5351594 None:intergenic 50.0%
AGGGTTTGGCTGCTATAACG+TGG + Chr2:5350167-5350186 MsG0280006719.01.T01:intron 50.0%
AGGTTCGTGATGCCATCCAT+CGG + Chr2:5350847-5350866 MsG0280006719.01.T01:CDS 50.0%
CAAACCTGGTAGCATCCACT+TGG - Chr2:5350923-5350942 None:intergenic 50.0%
CAAGGTCCAACAACAGAAGG+GGG + Chr2:5351498-5351517 MsG0280006719.01.T01:intron 50.0%
CCTGGTAAAGGCTTCATCTC+CGG - Chr2:5351557-5351576 None:intergenic 50.0%
CCTTCTAAGCTGCCTGGTAA+AGG - Chr2:5351569-5351588 None:intergenic 50.0%
CCTTTACCAGGCAGCTTAGA+AGG + Chr2:5351566-5351585 MsG0280006719.01.T01:intron 50.0%
CGTCGAGCCTCAAGATTCAA+CGG - Chr2:5351634-5351653 None:intergenic 50.0%
CGTTATAGCAGCCAAACCCT+TGG - Chr2:5350167-5350186 None:intergenic 50.0%
CGTTGAATCTTGAGGCTCGA+CGG + Chr2:5351632-5351651 MsG0280006719.01.T01:CDS 50.0%
GACGAAGATCGGTTGGATCA+CGG - Chr2:5349477-5349496 None:intergenic 50.0%
GCAGTTCAATCTGATGCCAG+AGG + Chr2:5350788-5350807 MsG0280006719.01.T01:CDS 50.0%
GCTACCAGAGCTACATGCTA+AGG + Chr2:5351326-5351345 MsG0280006719.01.T01:CDS 50.0%
GGAACTGCCACCAAATTGCT+GGG + Chr2:5351016-5351035 MsG0280006719.01.T01:CDS 50.0%
GGTCTGATGCGGCAAATGAA+AGG + Chr2:5350251-5350270 MsG0280006719.01.T01:intron 50.0%
GTAGTACCTCGTTGCTGAGA+AGG - Chr2:5351070-5351089 None:intergenic 50.0%
GTCACCTTAGCATGTAGCTC+TGG - Chr2:5351333-5351352 None:intergenic 50.0%
GTGTTTCCTTCTCAGCAACG+AGG + Chr2:5351061-5351080 MsG0280006719.01.T01:CDS 50.0%
TCTCAGTCAGGCAAAAGAGC+TGG + Chr2:5351094-5351113 MsG0280006719.01.T01:CDS 50.0%
TGATCGAGAACTTGAGCTCC+TGG + Chr2:5350995-5351014 MsG0280006719.01.T01:CDS 50.0%
TGGAACTGCCACCAAATTGC+TGG + Chr2:5351015-5351034 MsG0280006719.01.T01:CDS 50.0%
TGGCTTAGAAGCTTCTCCTC+TGG - Chr2:5350807-5350826 None:intergenic 50.0%
TGGTTACTAGAGAGACGGCT+TGG + Chr2:5350123-5350142 MsG0280006719.01.T01:CDS 50.0%
! AGCAATTTGGTGGCAGTTCC+AGG - Chr2:5351016-5351035 None:intergenic 50.0%
! GCATTGCACTGGCAAAGAAC+TGG - Chr2:5350770-5350789 None:intergenic 50.0%
! TAAGGATGGTGCCAAGGGTT+TGG + Chr2:5350153-5350172 MsG0280006719.01.T01:intron 50.0%
! TACCGGATTTTTGTGGGTCG+GGG + Chr2:5350410-5350429 MsG0280006719.01.T01:intron 50.0%
! TGGAGTAAGGATGGTGCCAA+GGG + Chr2:5350148-5350167 MsG0280006719.01.T01:intron 50.0%
AACTCGCGACGAAGATCGGT+TGG - Chr2:5349484-5349503 None:intergenic 55.0%
AGCAGTCCCCCTTCTGTTGT+TGG - Chr2:5351507-5351526 None:intergenic 55.0%
CAAGCCAAGTGGATGCTACC+AGG + Chr2:5350916-5350935 MsG0280006719.01.T01:CDS 55.0%
CACCCCGACCCACAAAAATC+CGG - Chr2:5350415-5350434 None:intergenic 55.0%
CAGGCCTTCCTCAACTAGCT+GGG - Chr2:5351472-5351491 None:intergenic 55.0%
CCGGAGATGAAGCCTTTACC+AGG + Chr2:5351554-5351573 MsG0280006719.01.T01:intron 55.0%
GAAGATCGGTTGGATCACGG+CGG - Chr2:5349474-5349493 None:intergenic 55.0%
GCAAGCAACGATGCTGAGGA+AGG + Chr2:5350827-5350846 MsG0280006719.01.T01:CDS 55.0%
GCCTTAGTGGGAGCAACAAG+AGG - Chr2:5350532-5350551 None:intergenic 55.0%
GGTACTACGTGCTCTCAGTC+AGG + Chr2:5351082-5351101 MsG0280006719.01.T01:CDS 55.0%
TCCTCAGCATCGTTGCTTGC+TGG - Chr2:5350827-5350846 None:intergenic 55.0%
TGAATCTTGAGGCTCGACGG+CGG + Chr2:5351635-5351654 MsG0280006719.01.T01:CDS 55.0%
TTGTTGGACCTTGTAGCGCC+AGG - Chr2:5351491-5351510 None:intergenic 55.0%
! GTGGAGTAAGGATGGTGCCA+AGG + Chr2:5350147-5350166 MsG0280006719.01.T01:intron 55.0%
!! GGGAGGGTACTCAGTATCCT+TGG + Chr2:5349992-5350011 MsG0280006719.01.T01:intron 55.0%
AACATCGGCGTCAAGCGCGT+CGG - Chr2:5349365-5349384 None:intergenic 60.0%
CCAGCTAGTTGAGGAAGGCC+TGG + Chr2:5351470-5351489 MsG0280006719.01.T01:intron 60.0%
CCAGGCCTTCCTCAACTAGC+TGG - Chr2:5351473-5351492 None:intergenic 60.0%
GCCAGCAAGCAACGATGCTG+AGG + Chr2:5350823-5350842 MsG0280006719.01.T01:CDS 60.0%
GCCTTCCTCAACTAGCTGGG+CGG - Chr2:5351469-5351488 None:intergenic 60.0%
GGCTTGGCGTGGAGTAAGGA+TGG + Chr2:5350139-5350158 MsG0280006719.01.T01:intron 60.0%
TGGGTCGGGGTGTGAGACAA+GGG + Chr2:5350423-5350442 MsG0280006719.01.T01:intron 60.0%
TTCCTCAACTAGCTGGGCGG+CGG - Chr2:5351466-5351485 None:intergenic 60.0%
! ACTAGAGAGACGGCTTGGCG+TGG + Chr2:5350128-5350147 MsG0280006719.01.T01:CDS 60.0%
! AGACGGCTTGGCGTGGAGTA+AGG + Chr2:5350135-5350154 MsG0280006719.01.T01:intron 60.0%
ACATCGGCGTCAAGCGCGTC+GGG - Chr2:5349364-5349383 None:intergenic 65.0%
GAGGAAGGCCTGGCGCTACA+AGG + Chr2:5351480-5351499 MsG0280006719.01.T01:intron 65.0%
GCCGCCCAGCTAGTTGAGGA+AGG + Chr2:5351465-5351484 MsG0280006719.01.T01:intron 65.0%
GTGGGTCGGGGTGTGAGACA+AGG + Chr2:5350422-5350441 MsG0280006719.01.T01:intron 65.0%
TCAAGCGCGTCGGGGATAGC+CGG - Chr2:5349355-5349374 None:intergenic 65.0%
CATCGGCGTCAAGCGCGTCG+GGG - Chr2:5349363-5349382 None:intergenic 70.0%
GACCGCCGCCCAGCTAGTTG+AGG + Chr2:5351461-5351480 MsG0280006719.01.T01:intron 70.0%
AGCGCGTCGGGGATAGCCGG+AGG - Chr2:5349352-5349371 None:intergenic 75.0%
GCGTCGGGGATAGCCGGAGG+AGG - Chr2:5349349-5349368 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr2 gene 5349334 5351873 5349334 ID=MsG0280006719.01;Name=MsG0280006719.01
Chr2 mRNA 5349334 5351873 5349334 ID=MsG0280006719.01.T01;Parent=MsG0280006719.01;Name=MsG0280006719.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|7|0|545
Chr2 exon 5349334 5349442 5349334 ID=MsG0280006719.01.T01:exon:2133;Parent=MsG0280006719.01.T01
Chr2 exon 5349562 5349909 5349562 ID=MsG0280006719.01.T01:exon:2134;Parent=MsG0280006719.01.T01
Chr2 exon 5350006 5350151 5350006 ID=MsG0280006719.01.T01:exon:2135;Parent=MsG0280006719.01.T01
Chr2 exon 5350511 5350674 5350511 ID=MsG0280006719.01.T01:exon:2136;Parent=MsG0280006719.01.T01
Chr2 exon 5350758 5351215 5350758 ID=MsG0280006719.01.T01:exon:2137;Parent=MsG0280006719.01.T01
Chr2 exon 5351307 5351421 5351307 ID=MsG0280006719.01.T01:exon:2138;Parent=MsG0280006719.01.T01
Chr2 exon 5351576 5351873 5351576 ID=MsG0280006719.01.T01:exon:2139;Parent=MsG0280006719.01.T01
Chr2 CDS 5349334 5349442 5349334 ID=MsG0280006719.01.T01:cds;Parent=MsG0280006719.01.T01
Chr2 CDS 5349562 5349909 5349562 ID=MsG0280006719.01.T01:cds;Parent=MsG0280006719.01.T01
Chr2 CDS 5350006 5350151 5350006 ID=MsG0280006719.01.T01:cds;Parent=MsG0280006719.01.T01
Chr2 CDS 5350511 5350674 5350511 ID=MsG0280006719.01.T01:cds;Parent=MsG0280006719.01.T01
Chr2 CDS 5350758 5351215 5350758 ID=MsG0280006719.01.T01:cds;Parent=MsG0280006719.01.T01
Chr2 CDS 5351307 5351421 5351307 ID=MsG0280006719.01.T01:cds;Parent=MsG0280006719.01.T01
Chr2 CDS 5351576 5351873 5351576 ID=MsG0280006719.01.T01:cds;Parent=MsG0280006719.01.T01
Gene Sequence

>MsG0280006719.01.T01

ATGCGTCTTGAGCCTCCTCCGGCTATCCCCGACGCGCTTGACGCCGATGTTCTACAACGTTTCCGACGAAAGCTTCTTCATAACTACACTTCCTGGTGCTCTTATCTTGAGTGTCTTTGTTATATTTATCATTTTATGGCAAAAGAGCTTAATATGGTTCTTGATGGGTTTATTGATCCTGATACTGGTAGTCCATTTTTGCCAACAGTTTCTGGTGAATATGGATTTTTGAAATCTGTTGTTATGCCAATTTATAATACTATTAAGATTGAAGTTGATAGTAGTAGAAATGGTAAAGCACCACATTCTGCATGGAGGAATTATGATGATATAAATGAGTATTTTTGGAGTAGGAGGTGTTTGAAGAAACTTAGATGGCCTTTGAATTTTGAGTCTAGCTTTTTGGGACTACACCTAAGGATAATAGGGTTGGGAAAACTGGCTATGTTGAACAAAGTATCCTTGGCAAGCATTGGAGAAGAAAGGATGTCAAGTCAAATGTTGACTTTGTTTATCACTTGGGGTGGTCTTAGGGTACTTCAATCTGTGCTTGATGCTGGAACTCAATATAGTTTGGTTACTAGAGAGACGGCTTGGCGTGGATTACTTCTTCAATTCAAACCTCTTGTTGCTCCCACTAAGGCTCTGTTGAAACTTAGGGCATCAATTATAGATGGCATGAGTTTTTCAATAACACCAACACAGAGTGGCAGTTGTTTTGCTATGGTTACCTGTTGTGTGGTATACTTCATGGATTTGCAAATATGGCTCCGATTCCAGTTCTTTGCCAGTGCAATGCAGTTCAATCTGATGCCAGAGGAGAAGCTTCTAAGCCAGCAAGCAACGATGCTGAGGAAGGTTCGTGATGCCATCCATCGGTTGAAATTACGATACGGACTTGGTCAACCCTTCACAAAAATTGAATCAAGCCAAGTGGATGCTACCAGGTTTGCCTTAATATGGAATGAGATAATCATTACTTTCAGGGAGGAAGATATAATCAGTGATCGAGAACTTGAGCTCCTGGAACTGCCACCAAATTGCTGGGACATTAGGGTAATTCGATGGCCGTGTTTCCTTCTCAGCAACGAGGTACTACGTGCTCTCAGTCAGGCAAAAGAGCTGGAAAATGAGTCTGACAGGTCACTATGGTTGAAGATGTGCAAGAATGAGTATCGCCGGTGTGCTGTCATTGAAGCTTATGATAGCATTAAGTACTTATTTCAAGCGTACAAGATGTCTCTGCTACCAGAGCTACATGCTAAGGTGACTGAACTGGTTAAAATTTCGATACAGCCAAACAAAGATTTGAATAAGGCTGTAAATTTGTTGCAAGCCTTGCAGCTTAGAAGGTTGTCTACAATTCTCACTTCAAGAGACGCAATGCACAATGTTCCGTTGAATCTTGAGGCTCGACGGCGGATTGCTTTCTTTAGCAATTCTTTGTTTATGAACATTCCCCGTGCTCCCTATGTTGAAAAAATGATGGCTTTCAGTGTTTTGACCCCATATTATGATGAGGAAGTTTTGTATAGCAAAGAGTCTCTTCGAAAAGAGAATGAGGATGGCATTACTACTCTGTTTTATTTGCAGAAGATTTATGACGATGAATGGAACAATTATGGAAAGAATGCGTAG
Protein sequence

>MsG0280006719.01.T01

MRLEPPPAIPDALDADVLQRFRRKLLHNYTSWCSYLECLCYIYHFMAKELNMVLDGFIDPDTGSPFLPTVSGEYGFLKSVVMPIYNTIKIEVDSSRNGKAPHSAWRNYDDINEYFWSRRCLKKLRWPLNFESSFLGLHLRIIGLGKLAMLNKVSLASIGEERMSSQMLTLFITWGGLRVLQSVLDAGTQYSLVTRETAWRGLLLQFKPLVAPTKALLKLRASIIDGMSFSITPTQSGSCFAMVTCCVVYFMDLQIWLRFQFFASAMQFNLMPEEKLLSQQATMLRKVRDAIHRLKLRYGLGQPFTKIESSQVDATRFALIWNEIIITFREEDIISDRELELLELPPNCWDIRVIRWPCFLLSNEVLRALSQAKELENESDRSLWLKMCKNEYRRCAVIEAYDSIKYLFQAYKMSLLPELHAKVTELVKISIQPNKDLNKAVNLLQALQLRRLSTILTSRDAMHNVPLNLEARRRIAFFSNSLFMNIPRAPYVEKMMAFSVLTPYYDEEVLYSKESLRKENEDGITTLFYLQKIYDDEWNNYGKNA*