AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017374.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017374.01.T01 MTR_3g106210 65.029 346 17 5 3 292 1 298 2.00e-135 413
MsG0380017374.01.T01 MTR_3g106210 65.029 346 17 5 3 292 1 298 2.56e-135 413
MsG0380017374.01.T01 MTR_3g106210 65.029 346 17 5 3 292 1 298 1.84e-134 414
MsG0380017374.01.T01 MTR_3g106210 65.029 346 17 5 3 292 1 298 1.93e-134 414
MsG0380017374.01.T01 MTR_1g013190 48.036 331 74 5 3 280 1 286 5.16e-82 270
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017374.01.T01 AT2G25170 43.732 343 82 7 2 292 17 300 1.61e-68 231
MsG0380017374.01.T01 AT2G25170 43.732 343 82 7 2 292 26 309 2.04e-68 231
MsG0380017374.01.T01 AT2G25170 43.567 342 82 7 3 292 1 283 5.82e-68 230
MsG0380017374.01.T01 AT2G25170 43.567 342 82 7 3 292 1 283 5.82e-68 230
MsG0380017374.01.T01 AT4G31900 48.966 145 58 4 142 281 94 227 4.77e-32 126
MsG0380017374.01.T01 AT4G31900 48.966 145 58 4 142 281 94 227 4.78e-32 126
MsG0380017374.01.T01 AT4G31900 50.485 103 41 1 177 279 92 184 1.53e-24 104

Find 60 sgRNAs with CRISPR-Local

Find 253 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTGAATCTTTCTATTTC+CGG 0.174222 3:-95499121 None:intergenic
ATACCAAATTCCAGTGTTTA+AGG 0.190119 3:-95496183 None:intergenic
TTCCCTTAAACACTGGAATT+TGG 0.211863 3:+95496180 MsG0380017374.01.T01:CDS
CATAGCCCCGAGTTTCTTTC+AGG 0.221774 3:+95499247 MsG0380017374.01.T01:CDS
TTCCATATGATGAATGTTAT+TGG 0.238758 3:+95499068 MsG0380017374.01.T01:CDS
GACTCATCAAGATTATAAAT+TGG 0.257070 3:-95495786 None:intergenic
GCATAAACACTCACGCATTC+AGG 0.279718 3:-95497521 None:intergenic
CGATCAACGGTGGTCCATTC+AGG 0.286735 3:-95498178 None:intergenic
TTGTAACTGCCCTATTCTTC+TGG 0.287775 3:+95499279 MsG0380017374.01.T01:CDS
TGTTTACTTCCACCACTTAA+AGG 0.294161 3:+95497474 MsG0380017374.01.T01:CDS
ATTCCTGACTTTATATTGAT+TGG 0.312519 3:+95496133 MsG0380017374.01.T01:CDS
AGTTGTTCACTTTGGTCTTC+AGG 0.324664 3:-95498099 None:intergenic
TCCATATGATGAATGTTATT+GGG 0.342504 3:+95499069 MsG0380017374.01.T01:CDS
CATAATGCTGCCAGAAGAAT+AGG 0.358027 3:-95499289 None:intergenic
TACCAAATTCCAGTGTTTAA+GGG 0.383206 3:-95496182 None:intergenic
TCCCAATAACATTCATCATA+TGG 0.397240 3:-95499070 None:intergenic
GCAACTATGCTTACCATTCC+AGG 0.399854 3:+95497451 MsG0380017374.01.T01:CDS
GCTTTCAGAAACTCTTTCTC+TGG 0.416771 3:-95498058 None:intergenic
AAGGTCCTGCTCCTGACAAC+TGG 0.418433 3:+95497493 MsG0380017374.01.T01:CDS
TTACCAATCAATATAAAGTC+AGG 0.431476 3:-95496136 None:intergenic
TAACGATGAGAGGGAATATC+TGG 0.440449 3:+95499030 MsG0380017374.01.T01:CDS
AAAGTCTTCATCTGACGTAT+TGG 0.440600 3:-95498143 None:intergenic
TTCAGGGCACTCCAGTTGTC+AGG 0.443894 3:-95497504 None:intergenic
TTGATCGAATAATTGCTTGC+AGG 0.449589 3:+95498194 MsG0380017374.01.T01:CDS
CAGATCTGGATGATCTCGAT+TGG 0.464490 3:+95499323 MsG0380017374.01.T01:CDS
TTGTTGCCATTCGTCCTGAA+TGG 0.466018 3:+95498164 MsG0380017374.01.T01:CDS
GAACAACTTCCACCGTCAAA+TGG 0.479409 3:+95498114 MsG0380017374.01.T01:CDS
GGAATGGTAAGCATAGTTGC+AGG 0.481666 3:-95497448 None:intergenic
GCACTCCAGTTGTCAGGAGC+AGG 0.507006 3:-95497498 None:intergenic
GTCTTCATCTGACGTATTGG+AGG 0.507751 3:-95498140 None:intergenic
TATTGGAGGATGCCATTTGA+CGG 0.509819 3:-95498126 None:intergenic
AGAGGGAATATCTGGTGAAG+TGG 0.510719 3:+95499038 MsG0380017374.01.T01:CDS
AAGTGATGCGGTACGATACT+TGG 0.523872 3:+95495875 MsG0380017374.01.T01:CDS
TGATATTTCTGCATTTCAGC+CGG 0.537471 3:+95499102 MsG0380017374.01.T01:CDS
ATAATGCTGCCAGAAGAATA+GGG 0.543274 3:-95499288 None:intergenic
TCAGGAGCAGGACCTTTAAG+TGG 0.546904 3:-95497486 None:intergenic
ATACCACCTGAAAGAAACTC+GGG 0.554580 3:-95499253 None:intergenic
TTCACTTTGGTCTTCAGGCG+AGG 0.561628 3:-95498094 None:intergenic
TGTCAAGCATGTGGTGAAAG+TGG 0.563943 3:+95497405 MsG0380017374.01.T01:CDS
AGTTGCAGGTTGCACAACTC+AGG 0.566181 3:-95497434 None:intergenic
ACGGTGGAAGTTGTTCACTT+TGG 0.567607 3:-95498107 None:intergenic
AAGACTTCGTGTACGATCAT+CGG 0.582157 3:+95495755 MsG0380017374.01.T01:CDS
AGCCCCGAGTTTCTTTCAGG+TGG 0.583039 3:+95499250 MsG0380017374.01.T01:CDS
CAAGTCAGGAAAAGTTTGAG+AGG 0.602148 3:+95495844 MsG0380017374.01.T01:CDS
CATAAACACTCACGCATTCA+GGG 0.604475 3:-95497520 None:intergenic
GTGGAAGTAAACACCTGGAA+TGG 0.605281 3:-95497464 None:intergenic
AATACCACCTGAAAGAAACT+CGG 0.609849 3:-95499254 None:intergenic
GGTGGTCCATTCAGGACGAA+TGG 0.615780 3:-95498170 None:intergenic
AAGTGGTGGAAGTAAACACC+TGG 0.617444 3:-95497469 None:intergenic
GGAGCAGGACCTTTAAGTGG+TGG 0.620703 3:-95497483 None:intergenic
GCAAGCAATTATTCGATCAA+CGG 0.631190 3:-95498191 None:intergenic
ACAGGGGTGATAACGATGAG+AGG 0.632263 3:+95499020 MsG0380017374.01.T01:intron
ATTCATTGTCATCATTAACA+CGG 0.641151 3:-95499189 None:intergenic
CAGGGGTGATAACGATGAGA+GGG 0.647661 3:+95499021 MsG0380017374.01.T01:intron
TGGAGGATGCCATTTGACGG+TGG 0.659238 3:-95498123 None:intergenic
GAGGATTGATAGAAGTGATG+CGG 0.670945 3:+95495863 MsG0380017374.01.T01:CDS
GAGGATTTATGTCAAGCATG+TGG 0.672613 3:+95497396 MsG0380017374.01.T01:CDS
AGCAATTATTCGATCAACGG+TGG 0.675678 3:-95498188 None:intergenic
GTAGTGGAAAATGAGTAGCT+TGG 0.679924 3:+95495728 None:intergenic
TACCACCTGAAAGAAACTCG+GGG 0.719991 3:-95499252 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTAAATTATTTT+GGG + Chr3:95497990-95498009 MsG0380017374.01.T01:intron 0.0%
!!! TTTTTTTTTTTAAATTATTT+TGG + Chr3:95497989-95498008 MsG0380017374.01.T01:intron 0.0%
!! TTCATATTAAAAATAAACAT+TGG + Chr3:95496441-95496460 MsG0380017374.01.T01:intron 10.0%
!!! AAAATTATAAAAGAGTTTTT+GGG - Chr3:95496513-95496532 None:intergenic 10.0%
!! AATTAATACATAAGAATTGA+AGG - Chr3:95497839-95497858 None:intergenic 15.0%
!! ATAACTTATCAATATCAATA+AGG - Chr3:95497624-95497643 None:intergenic 15.0%
!! GATTGATGAAATTTATTAAA+AGG + Chr3:95498771-95498790 MsG0380017374.01.T01:intron 15.0%
!! TAACTTATCAATATCAATAA+GGG - Chr3:95497623-95497642 None:intergenic 15.0%
!!! GAAAATTATAAAAGAGTTTT+TGG - Chr3:95496514-95496533 None:intergenic 15.0%
!!! TTCTATTTTTATTTAGAAAG+AGG + Chr3:95497377-95497396 MsG0380017374.01.T01:intron 15.0%
!! AACTTATCAATATCAATAAG+GGG - Chr3:95497622-95497641 None:intergenic 20.0%
!! ATTTCCCAAAAAATTATCAA+GGG - Chr3:95498464-95498483 None:intergenic 20.0%
!! TATATCAAACAATGTCATAA+AGG - Chr3:95497266-95497285 None:intergenic 20.0%
!! TTAAACAATATCTTGTTAAG+TGG + Chr3:95497726-95497745 MsG0380017374.01.T01:intron 20.0%
!! TTTAATTAGAACACTCAAAT+AGG + Chr3:95496397-95496416 MsG0380017374.01.T01:intron 20.0%
!!! AAAAGGCATTTAAACATAAA+AGG - Chr3:95495904-95495923 None:intergenic 20.0%
!!! AAAGGCATTTAAACATAAAA+GGG - Chr3:95495903-95495922 None:intergenic 20.0%
!!! AAGAAAGCAGTAAAATATTT+TGG + Chr3:95496356-95496375 MsG0380017374.01.T01:intron 20.0%
!!! AATTTTTGTTTTGTTTTTGC+AGG + Chr3:95497592-95497611 MsG0380017374.01.T01:intron 20.0%
!!! ATTTTTTACACTGTTTGAAA+TGG + Chr3:95498643-95498662 MsG0380017374.01.T01:intron 20.0%
!!! ATTTTTTGCTTAAAAAACCT+GGG + Chr3:95495820-95495839 MsG0380017374.01.T01:CDS 20.0%
!!! ATTTTTTTCCTTCCTTTTTT+TGG + Chr3:95496910-95496929 MsG0380017374.01.T01:intron 20.0%
!!! CATTTATAATCAGTTTTGTT+TGG + Chr3:95497019-95497038 MsG0380017374.01.T01:intron 20.0%
!!! TCATATCTTTAAATTTTACC+AGG - Chr3:95496111-95496130 None:intergenic 20.0%
!!! TTTTATTTTGCATATAGAAG+AGG - Chr3:95498244-95498263 None:intergenic 20.0%
! AAAAGTAGATGAAAAATACG+AGG - Chr3:95497867-95497886 None:intergenic 25.0%
! AACTTTATTGTAACGAAAAG+AGG + Chr3:95497052-95497071 MsG0380017374.01.T01:intron 25.0%
! AATTGGATTGATAAAAATGG+AGG + Chr3:95498700-95498719 MsG0380017374.01.T01:intron 25.0%
! ACTTATCAATATCAATAAGG+GGG - Chr3:95497621-95497640 None:intergenic 25.0%
! ATATTGTCATCAGTCATATT+TGG + Chr3:95498888-95498907 MsG0380017374.01.T01:intron 25.0%
! ATGACATTGTTTGATATAGT+TGG + Chr3:95497268-95497287 MsG0380017374.01.T01:intron 25.0%
! ATTAGAACTTTCAATCCAAT+TGG + Chr3:95498683-95498702 MsG0380017374.01.T01:intron 25.0%
! ATTCATTGTCATCATTAACA+CGG - Chr3:95499192-95499211 None:intergenic 25.0%
! ATTCCTGACTTTATATTGAT+TGG + Chr3:95496133-95496152 MsG0380017374.01.T01:CDS 25.0%
! ATTGGATTGATAAAAATGGA+GGG + Chr3:95498701-95498720 MsG0380017374.01.T01:intron 25.0%
! CATTTCCCAAAAAATTATCA+AGG - Chr3:95498465-95498484 None:intergenic 25.0%
! CTATTGAATCTTTCTATTTC+CGG - Chr3:95499124-95499143 None:intergenic 25.0%
! GAAAAATATATCTAGTGAAC+AGG - Chr3:95496878-95496897 None:intergenic 25.0%
! GACTCATCAAGATTATAAAT+TGG - Chr3:95495789-95495808 None:intergenic 25.0%
! TATAACAAGCTCAAATGAAA+AGG - Chr3:95495921-95495940 None:intergenic 25.0%
! TATGATGAAAATGTTATCCT+AGG + Chr3:95496937-95496956 MsG0380017374.01.T01:intron 25.0%
! TCATCATAGAAACCAAAAAA+AGG - Chr3:95496925-95496944 None:intergenic 25.0%
! TCCAATTGGATTGATAAAAA+TGG + Chr3:95498697-95498716 MsG0380017374.01.T01:intron 25.0%
! TCCATATGATGAATGTTATT+GGG + Chr3:95499069-95499088 MsG0380017374.01.T01:CDS 25.0%
! TTACCAATCAATATAAAGTC+AGG - Chr3:95496139-95496158 None:intergenic 25.0%
! TTCCATATGATGAATGTTAT+TGG + Chr3:95499068-95499087 MsG0380017374.01.T01:CDS 25.0%
! TTCGTTACAATAAAGTTCAT+TGG - Chr3:95497049-95497068 None:intergenic 25.0%
!! AATTGGAAGTTCTGATAAAA+TGG - Chr3:95498745-95498764 None:intergenic 25.0%
!! ATTTTTCTTGAATCTTGCTT+AGG + Chr3:95495944-95495963 MsG0380017374.01.T01:intron 25.0%
!! TGAATTGACCAAGTTTTTAA+AGG + Chr3:95496230-95496249 MsG0380017374.01.T01:intron 25.0%
!!! ATGCTTTTATTTTTCAGATC+TGG + Chr3:95499309-95499328 MsG0380017374.01.T01:CDS 25.0%
!!! GATTTTTTGCTTAAAAAACC+TGG + Chr3:95495819-95495838 MsG0380017374.01.T01:CDS 25.0%
!!! GCTTTTGAATGTTCTTATTT+TGG + Chr3:95497934-95497953 MsG0380017374.01.T01:intron 25.0%
!!! TAGTAAACGGAGTTATTTTT+TGG + Chr3:95496960-95496979 MsG0380017374.01.T01:intron 25.0%
!!! TCCATTTTTATCAATCCAAT+TGG - Chr3:95498701-95498720 None:intergenic 25.0%
!!! TTCTTTTGCCTTTAAAAACT+TGG - Chr3:95496241-95496260 None:intergenic 25.0%
!!! TTTTTAAAGGCAAAAGAATC+CGG + Chr3:95496243-95496262 MsG0380017374.01.T01:intron 25.0%
!!! TTTTTTGGTACATACATACT+AGG + Chr3:95496975-95496994 MsG0380017374.01.T01:intron 25.0%
AAAATGTTTCTCAGGATTTC+GGG + Chr3:95498339-95498358 MsG0380017374.01.T01:intron 30.0%
ACAATATCTTGTTAAGTGGA+AGG + Chr3:95497730-95497749 MsG0380017374.01.T01:intron 30.0%
ACATTAACTAGTGTAAAGCA+AGG - Chr3:95497315-95497334 None:intergenic 30.0%
ATACCAAATTCCAGTGTTTA+AGG - Chr3:95496186-95496205 None:intergenic 30.0%
ATATCACATCATTGAACGTT+TGG - Chr3:95498500-95498519 None:intergenic 30.0%
ATGTTATCCTAGGTAGTAAA+CGG + Chr3:95496947-95496966 MsG0380017374.01.T01:intron 30.0%
ATTTACATTGTTGTGTTGTC+TGG - Chr3:95497161-95497180 None:intergenic 30.0%
CAAAATGTTTCTCAGGATTT+CGG + Chr3:95498338-95498357 MsG0380017374.01.T01:intron 30.0%
CAATATCTTGTTAAGTGGAA+GGG + Chr3:95497731-95497750 MsG0380017374.01.T01:intron 30.0%
CATAGAAACCAAAAAAAGGA+AGG - Chr3:95496921-95496940 None:intergenic 30.0%
GTTTACACCATATATGTCTT+GGG - Chr3:95497244-95497263 None:intergenic 30.0%
TACAGACTTTATCCAGATAA+CGG - Chr3:95498283-95498302 None:intergenic 30.0%
TACCAAATTCCAGTGTTTAA+GGG - Chr3:95496185-95496204 None:intergenic 30.0%
TCCATAAACAAAATCACACA+CGG + Chr3:95497111-95497130 MsG0380017374.01.T01:intron 30.0%
TCCCAATAACATTCATCATA+TGG - Chr3:95499073-95499092 None:intergenic 30.0%
TTAAACACTGGAATTTGGTA+TGG + Chr3:95496185-95496204 MsG0380017374.01.T01:intron 30.0%
TTGGATTGATAAAAATGGAG+GGG + Chr3:95498702-95498721 MsG0380017374.01.T01:intron 30.0%
TTTCATCAATCCAACTGAAT+TGG - Chr3:95498762-95498781 None:intergenic 30.0%
! AACTCGTATAAACTTGTTTG+AGG + Chr3:95496037-95496056 MsG0380017374.01.T01:intron 30.0%
! GATTGAAAGTTCTAATGAAG+TGG - Chr3:95498679-95498698 None:intergenic 30.0%
! TTGATTGGTAAAAAGTGTAG+TGG + Chr3:95496148-95496167 MsG0380017374.01.T01:CDS 30.0%
!! TTAGCTTCTTTTTAGTCATC+TGG + Chr3:95496795-95496814 MsG0380017374.01.T01:intron 30.0%
!!! TGCACCCTTGATAATTTTTT+GGG + Chr3:95498457-95498476 MsG0380017374.01.T01:intron 30.0%
!!! TTGCACCCTTGATAATTTTT+TGG + Chr3:95498456-95498475 MsG0380017374.01.T01:intron 30.0%
AAAGTCTTCATCTGACGTAT+TGG - Chr3:95498146-95498165 None:intergenic 35.0%
AACTCATGGGATGTAATTGA+AGG - Chr3:95496474-95496493 None:intergenic 35.0%
AATAACTCCGTTTACTACCT+AGG - Chr3:95496957-95496976 None:intergenic 35.0%
AATACCACCTGAAAGAAACT+CGG - Chr3:95499257-95499276 None:intergenic 35.0%
ACAGACTTTATCCAGATAAC+GGG - Chr3:95498282-95498301 None:intergenic 35.0%
ACTCTCTCATTCTTGACATT+AGG + Chr3:95498402-95498421 MsG0380017374.01.T01:intron 35.0%
ACTGTACATGGTAAATTCGT+TGG + Chr3:95497768-95497787 MsG0380017374.01.T01:intron 35.0%
ACTTGTGCTACAAAAACTGT+TGG - Chr3:95497082-95497101 None:intergenic 35.0%
AGCTATCATTATCGTGTTGA+TGG + Chr3:95496598-95496617 MsG0380017374.01.T01:intron 35.0%
ATAATGCTGCCAGAAGAATA+GGG - Chr3:95499291-95499310 None:intergenic 35.0%
ATCAGAACTTCCAATTCAGT+TGG + Chr3:95498749-95498768 MsG0380017374.01.T01:intron 35.0%
ATCTACAGTGTAAAACATGC+TGG - Chr3:95496733-95496752 None:intergenic 35.0%
ATCTGGATAAAGTCTGTAAC+TGG + Chr3:95498285-95498304 MsG0380017374.01.T01:intron 35.0%
ATGACTGATGACAATATGAG+TGG - Chr3:95498885-95498904 None:intergenic 35.0%
CCATAAACAAAATCACACAC+GGG + Chr3:95497112-95497131 MsG0380017374.01.T01:intron 35.0%
CTAGCTATGCAGTTTAATAG+TGG + Chr3:95498554-95498573 MsG0380017374.01.T01:intron 35.0%
CTTGCTTAGGTATTTGTGTT+CGG + Chr3:95495957-95495976 MsG0380017374.01.T01:intron 35.0%
GCAAGCAATTATTCGATCAA+CGG - Chr3:95498194-95498213 None:intergenic 35.0%
GCATTTGTCAGCAATGTTAT+TGG - Chr3:95498967-95498986 None:intergenic 35.0%
GGTTTACACCATATATGTCT+TGG - Chr3:95497245-95497264 None:intergenic 35.0%
GTGTAATAAACCCTATGGAA+AGG - Chr3:95497817-95497836 None:intergenic 35.0%
GTTGGCATCTTTGCATATAT+TGG + Chr3:95497286-95497305 MsG0380017374.01.T01:intron 35.0%
TAACTATCAGTGACCATATG+AGG - Chr3:95495997-95496016 None:intergenic 35.0%
TATCATATCTGCACTGTACA+TGG + Chr3:95497756-95497775 MsG0380017374.01.T01:intron 35.0%
TATTTGGTTGTGCAACCTAA+TGG + Chr3:95498904-95498923 MsG0380017374.01.T01:intron 35.0%
TCTACAGTGTAAAACATGCT+GGG - Chr3:95496732-95496751 None:intergenic 35.0%
TGACTGATGACAATATGAGT+GGG - Chr3:95498884-95498903 None:intergenic 35.0%
TGAGTGACAAAATGTTTCTC+AGG + Chr3:95498331-95498350 MsG0380017374.01.T01:intron 35.0%
TGTTTACTTCCACCACTTAA+AGG + Chr3:95497474-95497493 MsG0380017374.01.T01:CDS 35.0%
TTCCCTTAAACACTGGAATT+TGG + Chr3:95496180-95496199 MsG0380017374.01.T01:CDS 35.0%
TTGATCGAATAATTGCTTGC+AGG + Chr3:95498194-95498213 MsG0380017374.01.T01:CDS 35.0%
! ACATTTTGTCACTCAAATGC+TGG - Chr3:95498326-95498345 None:intergenic 35.0%
! ATCTCGATTGGCTGATATAA+TGG + Chr3:95499335-95499354 MsG0380017374.01.T01:CDS 35.0%
! CATGGAATCTGTTGTTTGAA+TGG + Chr3:95498996-95499015 MsG0380017374.01.T01:intron 35.0%
! CTATGCAGTTTAATAGTGGA+TGG + Chr3:95498558-95498577 MsG0380017374.01.T01:intron 35.0%
! GACAAATGCATGCATTTTCA+TGG + Chr3:95498978-95498997 MsG0380017374.01.T01:intron 35.0%
! GCTTAGAAAGCTTGCTTAAT+TGG + Chr3:95498926-95498945 MsG0380017374.01.T01:intron 35.0%
! TGAAGGTGTAATAAACCCTA+TGG - Chr3:95497822-95497841 None:intergenic 35.0%
! TGATATTTCTGCATTTCAGC+CGG + Chr3:95499102-95499121 MsG0380017374.01.T01:CDS 35.0%
! TTGTTGTGTTGTCTGGAATA+TGG - Chr3:95497154-95497173 None:intergenic 35.0%
!! AGTTCAATTTGAGTTTTGCC+TGG + Chr3:95496090-95496109 MsG0380017374.01.T01:CDS 35.0%
!! TTTGACTTGACATGACCTAA+CGG - Chr3:95498382-95498401 None:intergenic 35.0%
!!! AAAGAGTTTTTGGGACTCTT+CGG - Chr3:95496504-95496523 None:intergenic 35.0%
AAGACTTCGTGTACGATCAT+CGG + Chr3:95495755-95495774 MsG0380017374.01.T01:CDS 40.0%
AGCAAGCTTTCTAAGCCATT+AGG - Chr3:95498922-95498941 None:intergenic 40.0%
AGCAATTATTCGATCAACGG+TGG - Chr3:95498191-95498210 None:intergenic 40.0%
AGTTAGCAAGTTAAATGCCC+AGG + Chr3:95496561-95496580 MsG0380017374.01.T01:intron 40.0%
ATACCACCTGAAAGAAACTC+GGG - Chr3:95499256-95499275 None:intergenic 40.0%
ATGATTCTGTTCCCGTTATC+TGG + Chr3:95498268-95498287 MsG0380017374.01.T01:intron 40.0%
ATTGTGTTCTGCCTTTCCAT+AGG + Chr3:95497803-95497822 MsG0380017374.01.T01:intron 40.0%
CAAGTCAGGAAAAGTTTGAG+AGG + Chr3:95495844-95495863 MsG0380017374.01.T01:CDS 40.0%
CATAAACACTCACGCATTCA+GGG - Chr3:95497523-95497542 None:intergenic 40.0%
CATAATGCTGCCAGAAGAAT+AGG - Chr3:95499292-95499311 None:intergenic 40.0%
CTGCATAGCTAGAAATGTCT+TGG - Chr3:95498546-95498565 None:intergenic 40.0%
CTTTGAGCTGTTCTGTGTAT+AGG + Chr3:95496060-95496079 MsG0380017374.01.T01:intron 40.0%
GACTGATGACAATATGAGTG+GGG - Chr3:95498883-95498902 None:intergenic 40.0%
GAGGATTGATAGAAGTGATG+CGG + Chr3:95495863-95495882 MsG0380017374.01.T01:CDS 40.0%
GAGGATTTATGTCAAGCATG+TGG + Chr3:95497396-95497415 MsG0380017374.01.T01:CDS 40.0%
GCTTTCAGAAACTCTTTCTC+TGG - Chr3:95498061-95498080 None:intergenic 40.0%
GGCAGAACACAATAAGTGAT+AGG - Chr3:95497796-95497815 None:intergenic 40.0%
GTTGTAAGTTAGTCCTGTCA+CGG + Chr3:95498814-95498833 MsG0380017374.01.T01:intron 40.0%
GTTTCTTTGTTCGATGCTAG+AGG + Chr3:95496841-95496860 MsG0380017374.01.T01:intron 40.0%
TAAAAAACCTGGGACAAGTC+AGG + Chr3:95495830-95495849 MsG0380017374.01.T01:CDS 40.0%
TAACGATGAGAGGGAATATC+TGG + Chr3:95499030-95499049 MsG0380017374.01.T01:CDS 40.0%
TACTGGACCCAAGACATATA+TGG + Chr3:95497234-95497253 MsG0380017374.01.T01:intron 40.0%
TCATCTGAGTCTCTCAGAAT+GGG - Chr3:95496760-95496779 None:intergenic 40.0%
TTGTAACTGCCCTATTCTTC+TGG + Chr3:95499279-95499298 MsG0380017374.01.T01:CDS 40.0%
TTGTGTTCTGCCTTTCCATA+GGG + Chr3:95497804-95497823 MsG0380017374.01.T01:intron 40.0%
! AGTTGTTCACTTTGGTCTTC+AGG - Chr3:95498102-95498121 None:intergenic 40.0%
! ATCTGTTGTTTGAATGGCAC+AGG + Chr3:95499002-95499021 MsG0380017374.01.T01:intron 40.0%
! CACAGTTTTCCCTTAAACAC+TGG + Chr3:95496173-95496192 MsG0380017374.01.T01:CDS 40.0%
! CTTTGATGCCTTTTGTTGAG+CGG + Chr3:95496276-95496295 MsG0380017374.01.T01:intron 40.0%
! GTTGTCTGGAATATGGTACA+CGG - Chr3:95497147-95497166 None:intergenic 40.0%
! TATTGGAGGATGCCATTTGA+CGG - Chr3:95498129-95498148 None:intergenic 40.0%
! TATTTGTGCCGCTCAACAAA+AGG - Chr3:95496287-95496306 None:intergenic 40.0%
! TCCAGTAAAACTTGGCTCTT+GGG - Chr3:95497221-95497240 None:intergenic 40.0%
! TCTGTTGTTTGAATGGCACA+GGG + Chr3:95499003-95499022 MsG0380017374.01.T01:intron 40.0%
! TTGCTTTGACCCAGATTTTG+CGG - Chr3:95497700-95497719 None:intergenic 40.0%
! TTGTCTGGAATATGGTACAC+GGG - Chr3:95497146-95497165 None:intergenic 40.0%
!! AAAAGGCATCAAAGCTCCAT+AGG - Chr3:95496270-95496289 None:intergenic 40.0%
!! AAAGGCATCAAAGCTCCATA+GGG - Chr3:95496269-95496288 None:intergenic 40.0%
!! CCCGTGTGTGATTTTGTTTA+TGG - Chr3:95497115-95497134 None:intergenic 40.0%
!! CTTGACATTAGGTTGACATC+AGG + Chr3:95498413-95498432 MsG0380017374.01.T01:intron 40.0%
!! TCTTGGGGAATTTGTTGTGT+GGG - Chr3:95497205-95497224 None:intergenic 40.0%
AAGTGATGCGGTACGATACT+TGG + Chr3:95495875-95495894 MsG0380017374.01.T01:CDS 45.0%
AAGTTAAATGCCCAGGCTGT+TGG + Chr3:95496568-95496587 MsG0380017374.01.T01:intron 45.0%
ACGGTGGAAGTTGTTCACTT+TGG - Chr3:95498110-95498129 None:intergenic 45.0%
AGAGGGAATATCTGGTGAAG+TGG + Chr3:95499038-95499057 MsG0380017374.01.T01:CDS 45.0%
AGATGTGTGTGCCTCACTAA+TGG + Chr3:95496625-95496644 MsG0380017374.01.T01:intron 45.0%
AGCTGTTAAAACCAACAGCC+TGG - Chr3:95496582-95496601 None:intergenic 45.0%
ATCAGGTGTTTGCAAGCATC+TGG + Chr3:95498430-95498449 MsG0380017374.01.T01:intron 45.0%
ATGTGTGTGCCTCACTAATG+GGG + Chr3:95496627-95496646 MsG0380017374.01.T01:intron 45.0%
CAGATCTGGATGATCTCGAT+TGG + Chr3:95499323-95499342 MsG0380017374.01.T01:CDS 45.0%
CTGAGAGACTCAGATGACAT+GGG + Chr3:95496763-95496782 MsG0380017374.01.T01:intron 45.0%
CTTCGGAGCAAGAAACTCAT+GGG - Chr3:95496487-95496506 None:intergenic 45.0%
GAACAACTTCCACCGTCAAA+TGG + Chr3:95498114-95498133 MsG0380017374.01.T01:CDS 45.0%
GAAGAACCTCTTTCCAGTTG+AGG - Chr3:95496658-95496677 None:intergenic 45.0%
GATGTGTGTGCCTCACTAAT+GGG + Chr3:95496626-95496645 MsG0380017374.01.T01:intron 45.0%
GCAACTATGCTTACCATTCC+AGG + Chr3:95497451-95497470 MsG0380017374.01.T01:CDS 45.0%
GCACAGGCAATAAGCTAGAA+AGG - Chr3:95496682-95496701 None:intergenic 45.0%
GCATAAACACTCACGCATTC+AGG - Chr3:95497524-95497543 None:intergenic 45.0%
GCATTGTTCAGTGCCTCATA+TGG + Chr3:95495981-95496000 MsG0380017374.01.T01:intron 45.0%
GCTGTTAAAACCAACAGCCT+GGG - Chr3:95496581-95496600 None:intergenic 45.0%
GGAATGGTAAGCATAGTTGC+AGG - Chr3:95497451-95497470 None:intergenic 45.0%
GTCATCTGAGTCTCTCAGAA+TGG - Chr3:95496761-95496780 None:intergenic 45.0%
GTCTTCATCTGACGTATTGG+AGG - Chr3:95498143-95498162 None:intergenic 45.0%
GTCTTGGGTCCAGTAAAACT+TGG - Chr3:95497229-95497248 None:intergenic 45.0%
GTGGAAGTAAACACCTGGAA+TGG - Chr3:95497467-95497486 None:intergenic 45.0%
GTGTAGATGTGTTAGCCGTT+AGG + Chr3:95498364-95498383 MsG0380017374.01.T01:intron 45.0%
TACCACCTGAAAGAAACTCG+GGG - Chr3:95499255-95499274 None:intergenic 45.0%
TCTGAGAGACTCAGATGACA+TGG + Chr3:95496762-95496781 MsG0380017374.01.T01:intron 45.0%
TCTTCGGAGCAAGAAACTCA+TGG - Chr3:95496488-95496507 None:intergenic 45.0%
TCTTTCTCTGGCACCCTAAA+GGG - Chr3:95498049-95498068 None:intergenic 45.0%
TGTCAAGCATGTGGTGAAAG+TGG + Chr3:95497405-95497424 MsG0380017374.01.T01:CDS 45.0%
TTGTGTGGGGGCAGTTTATT+TGG - Chr3:95497191-95497210 None:intergenic 45.0%
TTGTTGCCATTCGTCCTGAA+TGG + Chr3:95498164-95498183 MsG0380017374.01.T01:CDS 45.0%
! AAGTGGTGGAAGTAAACACC+TGG - Chr3:95497472-95497491 None:intergenic 45.0%
! CCAGTAAAACTTGGCTCTTG+GGG - Chr3:95497220-95497239 None:intergenic 45.0%
! CTGTTGTTTGAATGGCACAG+GGG + Chr3:95499004-95499023 MsG0380017374.01.T01:intron 45.0%
! GTCCAGTAAAACTTGGCTCT+TGG - Chr3:95497222-95497241 None:intergenic 45.0%
! TGTCTGGAATATGGTACACG+GGG - Chr3:95497145-95497164 None:intergenic 45.0%
!! AACTTTTCCTGACTTGTCCC+AGG - Chr3:95495840-95495859 None:intergenic 45.0%
!! CTCTTGGGGAATTTGTTGTG+TGG - Chr3:95497206-95497225 None:intergenic 45.0%
!! CTTGGGGAATTTGTTGTGTG+GGG - Chr3:95497204-95497223 None:intergenic 45.0%
!! TTGGGGAATTTGTTGTGTGG+GGG - Chr3:95497203-95497222 None:intergenic 45.0%
ACACACACATAGACCGTGAC+AGG - Chr3:95498830-95498849 None:intergenic 50.0%
ACAGTGACGCCGCAAAATCT+GGG + Chr3:95497688-95497707 MsG0380017374.01.T01:intron 50.0%
AGTTGCAGGTTGCACAACTC+AGG - Chr3:95497437-95497456 None:intergenic 50.0%
CATAGCCCCGAGTTTCTTTC+AGG + Chr3:95499247-95499266 MsG0380017374.01.T01:CDS 50.0%
CTCTTTCTCTGGCACCCTAA+AGG - Chr3:95498050-95498069 None:intergenic 50.0%
TAGCTTATTGCCTGTGCCGT+AGG + Chr3:95496685-95496704 MsG0380017374.01.T01:intron 50.0%
TCAGGAGCAGGACCTTTAAG+TGG - Chr3:95497489-95497508 None:intergenic 50.0%
TGAGATGCGCCTACTGTAGA+GGG + Chr3:95497651-95497670 MsG0380017374.01.T01:intron 50.0%
TGTTCGATGCTAGAGGACGT+CGG + Chr3:95496848-95496867 MsG0380017374.01.T01:intron 50.0%
! ACAGGGGTGATAACGATGAG+AGG + Chr3:95499020-95499039 MsG0380017374.01.T01:intron 50.0%
! CAGGGGTGATAACGATGAGA+GGG + Chr3:95499021-95499040 MsG0380017374.01.T01:intron 50.0%
! CCCCAAGAGCCAAGTTTTAC+TGG + Chr3:95497217-95497236 MsG0380017374.01.T01:intron 50.0%
! TTCACTTTGGTCTTCAGGCG+AGG - Chr3:95498097-95498116 None:intergenic 50.0%
!! TGTCGTCAAAGGCACTCCTA+CGG - Chr3:95496704-95496723 None:intergenic 50.0%
AAAGGGAGGGGGGAAAAGGT+AGG - Chr3:95498032-95498051 None:intergenic 55.0%
AAGGTCCTGCTCCTGACAAC+TGG + Chr3:95497493-95497512 MsG0380017374.01.T01:CDS 55.0%
AGCCCCGAGTTTCTTTCAGG+TGG + Chr3:95499250-95499269 MsG0380017374.01.T01:CDS 55.0%
CCACCATCACCCTCTACAGT+AGG - Chr3:95497663-95497682 None:intergenic 55.0%
CGATCAACGGTGGTCCATTC+AGG - Chr3:95498181-95498200 None:intergenic 55.0%
GACAGTGACGCCGCAAAATC+TGG + Chr3:95497687-95497706 MsG0380017374.01.T01:intron 55.0%
GCAGTGCCTCAACTGGAAAG+AGG + Chr3:95496649-95496668 MsG0380017374.01.T01:intron 55.0%
GCATCAAAGCTCCATAGGGC+CGG - Chr3:95496265-95496284 None:intergenic 55.0%
GCTGGGAACAGTGTCGTCAA+AGG - Chr3:95496715-95496734 None:intergenic 55.0%
GGAGCAGGACCTTTAAGTGG+TGG - Chr3:95497486-95497505 None:intergenic 55.0%
GGCAAAAGAATCCGGCCCTA+TGG + Chr3:95496251-95496270 MsG0380017374.01.T01:intron 55.0%
GGTGGTCCATTCAGGACGAA+TGG - Chr3:95498173-95498192 None:intergenic 55.0%
GTGAGATGCGCCTACTGTAG+AGG + Chr3:95497650-95497669 MsG0380017374.01.T01:intron 55.0%
TAATGGGGCAGTGCCTCAAC+TGG + Chr3:95496642-95496661 MsG0380017374.01.T01:intron 55.0%
TCTCTGGCACCCTAAAGGGA+GGG - Chr3:95498045-95498064 None:intergenic 55.0%
TGGAATATGGTACACGGGGC+AGG - Chr3:95497141-95497160 None:intergenic 55.0%
TTCTCTGGCACCCTAAAGGG+AGG - Chr3:95498046-95498065 None:intergenic 55.0%
! ACCTTTTCCCCCCTCCCTTT+AGG + Chr3:95498032-95498051 MsG0380017374.01.T01:intron 55.0%
! CCTACTGTAGAGGGTGATGG+TGG + Chr3:95497660-95497679 MsG0380017374.01.T01:intron 55.0%
! CCTTTTCCCCCCTCCCTTTA+GGG + Chr3:95498033-95498052 MsG0380017374.01.T01:intron 55.0%
! TGGAGGATGCCATTTGACGG+TGG - Chr3:95498126-95498145 None:intergenic 55.0%
! TTCAGGGCACTCCAGTTGTC+AGG - Chr3:95497507-95497526 None:intergenic 55.0%
!! ACTGTAGAGGGTGATGGTGG+CGG + Chr3:95497663-95497682 MsG0380017374.01.T01:intron 55.0%
CCCTAAAGGGAGGGGGGAAA+AGG - Chr3:95498036-95498055 None:intergenic 60.0%
CTCTGGCACCCTAAAGGGAG+GGG - Chr3:95498044-95498063 None:intergenic 60.0%
GCACTCCAGTTGTCAGGAGC+AGG - Chr3:95497501-95497520 None:intergenic 60.0%
GCGCCTACTGTAGAGGGTGA+TGG + Chr3:95497657-95497676 MsG0380017374.01.T01:intron 60.0%
TCTGGCACCCTAAAGGGAGG+GGG - Chr3:95498043-95498062 None:intergenic 60.0%
!! CAAAGGCACTCCTACGGCAC+AGG - Chr3:95496698-95496717 None:intergenic 60.0%
!! GAGGCACTGCCCCATTAGTG+AGG - Chr3:95496639-95496658 None:intergenic 60.0%
CTGGCACCCTAAAGGGAGGG+GGG - Chr3:95498042-95498061 None:intergenic 65.0%
GGGAGGGGGGAAAAGGTAGG+AGG - Chr3:95498029-95498048 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 95495732 95499354 95495732 ID=MsG0380017374.01;Name=MsG0380017374.01
Chr3 mRNA 95495732 95499354 95495732 ID=MsG0380017374.01.T01;Parent=MsG0380017374.01;Name=MsG0380017374.01.T01;_AED=0.50;_eAED=0.59;_QI=0|0.25|0.4|1|0.75|0.8|5|0|304
Chr3 exon 95495732 95495896 95495732 ID=MsG0380017374.01.T01:exon:26978;Parent=MsG0380017374.01.T01
Chr3 exon 95496082 95496201 95496082 ID=MsG0380017374.01.T01:exon:26979;Parent=MsG0380017374.01.T01
Chr3 exon 95497393 95497529 95497393 ID=MsG0380017374.01.T01:exon:26980;Parent=MsG0380017374.01.T01
Chr3 exon 95498054 95498215 95498054 ID=MsG0380017374.01.T01:exon:26981;Parent=MsG0380017374.01.T01
Chr3 exon 95499024 95499354 95499024 ID=MsG0380017374.01.T01:exon:26982;Parent=MsG0380017374.01.T01
Chr3 CDS 95495732 95495896 95495732 ID=MsG0380017374.01.T01:cds;Parent=MsG0380017374.01.T01
Chr3 CDS 95496082 95496201 95496082 ID=MsG0380017374.01.T01:cds;Parent=MsG0380017374.01.T01
Chr3 CDS 95497393 95497529 95497393 ID=MsG0380017374.01.T01:cds;Parent=MsG0380017374.01.T01
Chr3 CDS 95498054 95498215 95498054 ID=MsG0380017374.01.T01:cds;Parent=MsG0380017374.01.T01
Chr3 CDS 95499024 95499354 95499024 ID=MsG0380017374.01.T01:cds;Parent=MsG0380017374.01.T01
Gene Sequence

>MsG0380017374.01.T01

TGGAAAATGAGTAGCTTGGTTGAAAGACTTCGTGTACGATCATCGGATCGCAAGCCAATTTATAATCTTGATGAGTCAGATGATGAAGATTTTTTGCTTAAAAAACCTGGGACAAGTCAGGAAAAGTTTGAGAGGATTGATAGAAGTGATGCGGTACGATACTTGGAAATTCTAGTTCAATTTGAGTTTTGCCTGGTAAAATTTAAAGATATGAATATTCCTGACTTTATATTGATTGGTAAAAAGTGTAGTGGTGCACAGTTTTCCCTTAAACACTGGAATTTGAAAGAGGATTTATGTCAAGCATGTGGTGAAAGTGGAGATCTCCTGAGTTGTGCAACCTGCAACTATGCTTACCATTCCAGGTGTTTACTTCCACCACTTAAAGGTCCTGCTCCTGACAACTGGAGTGCCCTGAATGCGGTGCCAGAGAAAGAGTTTCTGAAAGCTTTCAAGAGTCATCCTCGCCTGAAGACCAAAGTGAACAACTTCCACCGTCAAATGGCATCCTCCAATACGTCAGATGAAGACTTTGTTGCCATTCGTCCTGAATGGACCACCGTTGATCGAATAATTGCTTGCAGGGGTGATAACGATGAGAGGGAATATCTGGTGAAGTGGAAAGAGCTTCCATATGATGAATGTTATTGGGAATCTGAGTCTGATATTTCTGCATTTCAGCCGGAAATAGAAAGATTCAATAGATTTCGTTCTAGATCGAGCAAACTTGCTTTCATTAAGCAAAAAAGCCGTGTTAATGATGACAATGAATTGAAGAAACAGCAGAAAGAATTTCATCAGTATGAACATAGCCCCGAGTTTCTTTCAGGTGGTATTTTTTGTAACTGCCCTATTCTTCTGGCAGCATTATGCTTTTATTTTTCAGATCTGGATGATCTCGATTGGCTGATATAA
Protein sequence

>MsG0380017374.01.T01

WKMSSLVERLRVRSSDRKPIYNLDESDDEDFLLKKPGTSQEKFERIDRSDAVRYLEILVQFEFCLVKFKDMNIPDFILIGKKCSGAQFSLKHWNLKEDLCQACGESGDLLSCATCNYAYHSRCLLPPLKGPAPDNWSALNAVPEKEFLKAFKSHPRLKTKVNNFHRQMASSNTSDEDFVAIRPEWTTVDRIIACRGDNDEREYLVKWKELPYDECYWESESDISAFQPEIERFNRFRSRSSKLAFIKQKSRVNDDNELKKQQKEFHQYEHSPEFLSGGIFCNCPILLAALCFYFSDLDDLDWLI*