AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280006593.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006593.01.T01 MTR_2g011420 97.315 298 4 1 1 294 1 298 0.0 592
MsG0280006593.01.T01 MTR_2g011420 96.209 211 4 1 1 207 1 211 1.27e-145 408
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280006593.01.T01 AT1G28120 71.377 276 69 3 23 294 26 295 3.89e-145 410

Find 77 sgRNAs with CRISPR-Local

Find 375 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAGTCAGTTTCAGATTA+TGG 0.229342 2:-3818160 MsG0280006593.01.T01:CDS
TATTCTCTAGGAGCATATTT+TGG 0.256573 2:-3819543 MsG0280006593.01.T01:intron
ACCCACAAACGGAAATTTCT+TGG 0.270680 2:+3822653 None:intergenic
AATAACAAAGCAACATAAAA+TGG 0.275010 2:+3817323 None:intergenic
AAATTACCCCACGCAGATTC+TGG 0.280776 2:+3822726 None:intergenic
GCGGAATAAAGAACCGGTTT+TGG 0.300708 2:-3822778 MsG0280006593.01.T01:CDS
CATGATTTCACGCCGGTTGC+TGG 0.325738 2:-3817640 MsG0280006593.01.T01:CDS
CCTTTAATGCAGGTGCTTGA+TGG 0.327016 2:-3819899 MsG0280006593.01.T01:intron
ATCAGGCAGTCCTATATTAC+TGG 0.332456 2:-3820033 MsG0280006593.01.T01:CDS
CCAAAGTGAGGATGATCTAT+TGG 0.358729 2:-3817529 MsG0280006593.01.T01:exon
GCAGCAGCAATCTTCTATTC+AGG 0.365842 2:-3822685 MsG0280006593.01.T01:CDS
AACCTGCTCAACTGTTGTAT+TGG 0.402598 2:+3817976 None:intergenic
GAAATTTGAATTGGTTTAAG+TGG 0.409110 2:-3822807 MsG0280006593.01.T01:five_prime_UTR
GCCAAGAAATTTCCGTTTGT+GGG 0.422209 2:-3822654 MsG0280006593.01.T01:CDS
ATTTCCGTTTGTGGGTGATA+AGG 0.426081 2:-3822646 MsG0280006593.01.T01:intron
TACCGCCCTTTCAGATGCAT+TGG 0.433997 2:-3817731 MsG0280006593.01.T01:CDS
TCAGTTATTCCTTGAGCAGC+TGG 0.445312 2:-3818394 MsG0280006593.01.T01:intron
ATCATCCTCACTTTGGATAG+AGG 0.448191 2:+3817536 None:intergenic
ATTCAGCTCCACACTGAGCT+TGG 0.450711 2:-3817484 MsG0280006593.01.T01:three_prime_UTR
AGCCAAGAAATTTCCGTTTG+TGG 0.451303 2:-3822655 MsG0280006593.01.T01:CDS
GATGGAAACTGCTTCTTTCG+AGG 0.453514 2:-3819845 MsG0280006593.01.T01:CDS
CTTTAATGCAGGTGCTTGAT+GGG 0.460949 2:-3819898 MsG0280006593.01.T01:intron
ACCGCCCTTTCAGATGCATT+GGG 0.465250 2:-3817730 MsG0280006593.01.T01:CDS
TAGAAAAGCACTTCAGACCT+TGG 0.469580 2:-3819468 MsG0280006593.01.T01:CDS
CCAATAGATCATCCTCACTT+TGG 0.471036 2:+3817529 None:intergenic
AGAAAAGCACTTCAGACCTT+GGG 0.475463 2:-3819467 MsG0280006593.01.T01:CDS
ACGATATAGTAATGTGATGA+AGG 0.477093 2:+3817576 None:intergenic
TATATTACTGGAGAAAATCA+AGG 0.477418 2:-3820021 MsG0280006593.01.T01:intron
GACCGTAGCTCATGTGATAC+TGG 0.477717 2:-3817682 MsG0280006593.01.T01:CDS
TCAAGATACACAACACGGAT+TGG 0.481206 2:+3817703 None:intergenic
CTTGGGAGATCACCAGCAAC+CGG 0.484670 2:+3817628 None:intergenic
CAAATCAGCTGTTGAGCCAA+TGG 0.487126 2:-3817779 MsG0280006593.01.T01:CDS
GATTATTAATGCACTAATGT+CGG 0.487838 2:+3817354 None:intergenic
ACTGAGCTTGGTTGTTAATG+AGG 0.497760 2:-3817472 MsG0280006593.01.T01:three_prime_UTR
AACCAATACAACAGTTGAGC+AGG 0.497886 2:-3817978 MsG0280006593.01.T01:intron
TCAGAGCTACCACTAGCACT+TGG 0.502096 2:+3817610 None:intergenic
TTGGCTGCTGAATATCAATC+AGG 0.505721 2:-3820050 MsG0280006593.01.T01:CDS
AAATCAGCTGTTGAGCCAAT+GGG 0.508018 2:-3817778 MsG0280006593.01.T01:CDS
CAGCTGGAAGACGTTATTCA+AGG 0.512483 2:-3818378 MsG0280006593.01.T01:CDS
ATTCGGCGTACTCGTGGAGA+TGG 0.513061 2:-3819863 MsG0280006593.01.T01:CDS
ATGGGCAATATGCTGCCATT+CGG 0.513520 2:-3819880 MsG0280006593.01.T01:CDS
ACTTCCCCATCATCCAAAAC+CGG 0.521167 2:+3822765 None:intergenic
TCAGCAGCCAAGCTAGATAG+TGG 0.526345 2:+3820062 None:intergenic
TGGTCGCTCTCTTCTCCCAT+TGG 0.541430 2:+3817763 None:intergenic
TTGGTTAAGCCCATAATGAA+AGG 0.547596 2:+3817995 None:intergenic
TGATGGGGAAGTAGAGTATG+AGG 0.548779 2:-3822754 MsG0280006593.01.T01:CDS
GCAGGAACCACTATCTAGCT+TGG 0.550864 2:-3820069 MsG0280006593.01.T01:intron
GCTGCCATTCGGCGTACTCG+TGG 0.551041 2:-3819869 MsG0280006593.01.T01:CDS
AAGGGAAAGAGACGTCCATA+AGG 0.560633 2:-3818359 MsG0280006593.01.T01:intron
CTGAGCTTGGTTGTTAATGA+GGG 0.563049 2:-3817471 MsG0280006593.01.T01:three_prime_UTR
TAACGTCTTCCAGCTGCTCA+AGG 0.563282 2:+3818385 None:intergenic
CAGAGCTACCACTAGCACTT+GGG 0.563915 2:+3817611 None:intergenic
GGCTGGTCCAGAATCTGCGT+GGG 0.566158 2:-3822733 MsG0280006593.01.T01:CDS
GGTGATCTCCCAAGTGCTAG+TGG 0.566956 2:-3817619 MsG0280006593.01.T01:CDS
AATGCCCAATGCATCTGAAA+GGG 0.567632 2:+3817726 None:intergenic
GAATGCCCAATGCATCTGAA+AGG 0.571708 2:+3817725 None:intergenic
CTTACCTTATCACCCACAAA+CGG 0.573186 2:+3822642 None:intergenic
ATCACATTACTATATCGTCC+TGG 0.585998 2:-3817571 MsG0280006593.01.T01:CDS
CGATATAGTAATGTGATGAA+GGG 0.586075 2:+3817577 None:intergenic
CACCAGTATCACATGAGCTA+CGG 0.599499 2:+3817680 None:intergenic
AGCTGGAAGACGTTATTCAA+GGG 0.602756 2:-3818377 MsG0280006593.01.T01:CDS
GGGGAAGTAGAGTATGAGGC+TGG 0.604667 2:-3822750 MsG0280006593.01.T01:CDS
AGTCAATTCTGCATAACCCA+AGG 0.624232 2:+3819451 None:intergenic
ATCTCCACGAGTACGCCGAA+TGG 0.624749 2:+3819865 None:intergenic
GCCCAATGCATCTGAAAGGG+CGG 0.633230 2:+3817729 None:intergenic
TAGCTTGCGATTTCGATCGA+AGG 0.634318 2:-3823114 MsG0280006593.01.T01:intron
GATATCCTCTATCCAAAGTG+AGG 0.635051 2:-3817541 MsG0280006593.01.T01:exon
AGGCTGGTCCAGAATCTGCG+TGG 0.639324 2:-3822734 MsG0280006593.01.T01:CDS
AAAGGGCGGTAATGTGAACA+TGG 0.647398 2:+3817743 None:intergenic
ATTATATGATCACAGTCATG+AGG 0.653815 2:-3818203 MsG0280006593.01.T01:intron
TTGCTCTTCACTCTCTCACA+CGG 0.656347 2:-3823137 MsG0280006593.01.T01:five_prime_UTR
TAGAGGATATCATAGTGACC+AGG 0.664906 2:+3817553 None:intergenic
ATTAACAACCAAGCTCAGTG+TGG 0.695543 2:+3817476 None:intergenic
AAATCATCATGATTTCACGC+CGG 0.709072 2:-3817647 MsG0280006593.01.T01:CDS
CGTAGCTCATGTGATACTGG+TGG 0.709600 2:-3817679 MsG0280006593.01.T01:CDS
GCTGGTCCAGAATCTGCGTG+GGG 0.726249 2:-3822732 MsG0280006593.01.T01:CDS
TACGGTCAAGATACACAACA+CGG 0.736056 2:+3817698 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAATATTCTTAAATG+AGG + Chr2:3822169-3822188 None:intergenic 10.0%
!!! AAATATCTTTTGAATTTAAA+AGG + Chr2:3819081-3819100 None:intergenic 10.0%
!!! AATAAATTAATCTAAAGTTA+TGG - Chr2:3819236-3819255 MsG0280006593.01.T01:intron 10.0%
!!! ATTATTTCATTAATGTTTTT+TGG + Chr2:3819744-3819763 None:intergenic 10.0%
!! AAAATTATTATTATCTTTGC+AGG - Chr2:3817729-3817748 MsG0280006593.01.T01:CDS 15.0%
!! AATAAGATAGAGTTAATTTA+TGG + Chr2:3821045-3821064 None:intergenic 15.0%
!! ATTATATACCAAAAAGTTAA+TGG + Chr2:3818519-3818538 None:intergenic 15.0%
!!! AATGTATGTTTTGTATTTTA+AGG - Chr2:3818327-3818346 MsG0280006593.01.T01:intron 15.0%
!!! AGAATTTTTTATAAGATTAG+TGG + Chr2:3821294-3821313 None:intergenic 15.0%
!!! GAATTTTTTATAAGATTAGT+GGG + Chr2:3821293-3821312 None:intergenic 15.0%
!!! GTACTTTTTGTATTTAATAT+GGG + Chr2:3819059-3819078 None:intergenic 15.0%
!!! TTATTATTCCATTAACTTTT+TGG - Chr2:3818508-3818527 MsG0280006593.01.T01:intron 15.0%
!!! TTTTATATGTGTATATCAAA+GGG + Chr2:3819308-3819327 None:intergenic 15.0%
!! AAAAAATCTATCGAGAATTT+AGG - Chr2:3817429-3817448 MsG0280006593.01.T01:three_prime_UTR 20.0%
!! AAAAATCTATCGAGAATTTA+GGG - Chr2:3817430-3817449 MsG0280006593.01.T01:three_prime_UTR 20.0%
!! AACAATTCAACAAAAATTGA+AGG + Chr2:3817605-3817624 None:intergenic 20.0%
!! ACATAACAATAAAACATACA+AGG + Chr2:3820800-3820819 None:intergenic 20.0%
!! ATAAAAAATTCTCCAAACAT+AGG - Chr2:3821302-3821321 MsG0280006593.01.T01:intron 20.0%
!! ATGTAACAATAAATCATTGA+AGG + Chr2:3820894-3820913 None:intergenic 20.0%
!! ATTCAAGAAACATGAAAATA+TGG + Chr2:3820672-3820691 None:intergenic 20.0%
!! ATTTATTTGAAGAGAGAAAA+AGG - Chr2:3820232-3820251 MsG0280006593.01.T01:intron 20.0%
!! CAAAACATACATTTAATAGA+AGG + Chr2:3818320-3818339 None:intergenic 20.0%
!! CTACAGTAGTAAAAAAATTA+AGG - Chr2:3821738-3821757 MsG0280006593.01.T01:intron 20.0%
!! GTAAAAAGTGAAATTTGAAT+TGG - Chr2:3817788-3817807 MsG0280006593.01.T01:intron 20.0%
!! GTCTTTATCAACATTTAATT+TGG - Chr2:3819775-3819794 MsG0280006593.01.T01:intron 20.0%
!! TAACAAAGGTTTCTATTTAA+TGG - Chr2:3821976-3821995 MsG0280006593.01.T01:intron 20.0%
!! TCATACAACAGAAAAAATAT+AGG - Chr2:3821951-3821970 MsG0280006593.01.T01:intron 20.0%
!! TGATTGTACATACATAAATT+AGG + Chr2:3820174-3820193 None:intergenic 20.0%
!! TTTAACATCAATATTGAACT+GGG - Chr2:3819410-3819429 MsG0280006593.01.T01:intron 20.0%
!! TTTATTTGAAGAGAGAAAAA+GGG - Chr2:3820233-3820252 MsG0280006593.01.T01:intron 20.0%
!! TTTGATGAAAAAACTATTTG+AGG - Chr2:3818060-3818079 MsG0280006593.01.T01:intron 20.0%
!!! AAGCTAATTCAAGTTAATTA+AGG + Chr2:3818131-3818150 None:intergenic 20.0%
!!! AATTTATGGACTGAAATTAT+TGG + Chr2:3821031-3821050 None:intergenic 20.0%
!!! ATTTTTTGAACCTTTCATTA+TGG - Chr2:3822599-3822618 MsG0280006593.01.T01:intron 20.0%
!!! CAGAATTTGTTAAACTAAAA+TGG - Chr2:3820392-3820411 MsG0280006593.01.T01:intron 20.0%
!!! GACTTTTGAAGATTTTTTTA+CGG - Chr2:3821172-3821191 MsG0280006593.01.T01:intron 20.0%
!!! GGTACTTTTTGTATTTAATA+TGG + Chr2:3819060-3819079 None:intergenic 20.0%
!!! GTTTTATATGTGTATATCAA+AGG + Chr2:3819309-3819328 None:intergenic 20.0%
!!! TAGGTAATCAACATATTTTT+AGG - Chr2:3818951-3818970 MsG0280006593.01.T01:intron 20.0%
!!! TTAATAGTGGATTATCATTT+TGG - Chr2:3821676-3821695 MsG0280006593.01.T01:intron 20.0%
!!! TTTTCTATTCTAATACTTAC+AGG - Chr2:3819098-3819117 MsG0280006593.01.T01:intron 20.0%
!!! TTTTTAAAAATGCTGTGAAT+TGG - Chr2:3822089-3822108 MsG0280006593.01.T01:intron 20.0%
!!! TTTTTTGAACCTTTCATTAT+GGG - Chr2:3822600-3822619 MsG0280006593.01.T01:intron 20.0%
! AAAAAATATAGGCGTAACAA+AGG - Chr2:3821962-3821981 MsG0280006593.01.T01:intron 25.0%
! AAAATAAAGCAACATGTTTG+TGG + Chr2:3822065-3822084 None:intergenic 25.0%
! AAACAGTTTGTCAAGAAAAA+TGG + Chr2:3822520-3822539 None:intergenic 25.0%
! AATAAATTCACCATAGTTCA+AGG + Chr2:3821501-3821520 None:intergenic 25.0%
! AATATTTAATGTGTGTGATC+CGG + Chr2:3818451-3818470 None:intergenic 25.0%
! AGAAATGATTGAAAGAACAA+AGG - Chr2:3820489-3820508 MsG0280006593.01.T01:intron 25.0%
! ATCACAAAAAAACTAGACTT+TGG - Chr2:3820194-3820213 MsG0280006593.01.T01:intron 25.0%
! ATCCACTATTAAAACTTGAA+AGG + Chr2:3821668-3821687 None:intergenic 25.0%
! CAAAAGGAAATAGAGATAAA+AGG + Chr2:3820622-3820641 None:intergenic 25.0%
! CAGTTCAATATTGATGTTAA+AGG + Chr2:3819411-3819430 None:intergenic 25.0%
! CATAAATAGATTTGGATTCT+TGG + Chr2:3819983-3820002 None:intergenic 25.0%
! CTTCATTATCTAGTCATTTA+GGG - Chr2:3818019-3818038 MsG0280006593.01.T01:CDS 25.0%
! CTTTAACATCAATATTGAAC+TGG - Chr2:3819409-3819428 MsG0280006593.01.T01:intron 25.0%
! GATGATTATATCCATATACA+AGG + Chr2:3822755-3822774 None:intergenic 25.0%
! GATTATTAATGCACTAATGT+CGG + Chr2:3823253-3823272 None:intergenic 25.0%
! TAAAGAAAGTGACATGAAAT+TGG + Chr2:3821633-3821652 None:intergenic 25.0%
! TACACGTACATAAATAGATT+TGG + Chr2:3819991-3820010 None:intergenic 25.0%
! TAGAGAATATGCAATTAAAC+TGG + Chr2:3820944-3820963 None:intergenic 25.0%
! TATAGTTCTTCTATTAGTGT+TGG - Chr2:3822023-3822042 MsG0280006593.01.T01:intron 25.0%
! TATATTACTGGAGAAAATCA+AGG - Chr2:3820583-3820602 MsG0280006593.01.T01:intron 25.0%
! TCAATGAAAATTCTTAGTGA+AGG + Chr2:3822283-3822302 None:intergenic 25.0%
! TCCACTATTAAAACTTGAAA+GGG + Chr2:3821667-3821686 None:intergenic 25.0%
! TCTTGATTGTTCAAAAAAGT+TGG - Chr2:3821924-3821943 MsG0280006593.01.T01:intron 25.0%
! TGGAAACAATAAAACATACA+AGG + Chr2:3820924-3820943 None:intergenic 25.0%
! TGTACATACATAAATTAGGA+TGG + Chr2:3820170-3820189 None:intergenic 25.0%
! TTAACTCTATCTTATTCTCT+AGG - Chr2:3821049-3821068 MsG0280006593.01.T01:intron 25.0%
! TTATTTGAAGAGAGAAAAAG+GGG - Chr2:3820234-3820253 MsG0280006593.01.T01:intron 25.0%
! TTCAATATTGATGTTAAAGG+TGG + Chr2:3819408-3819427 None:intergenic 25.0%
! TTTGATGTCAATATTGAACT+AGG + Chr2:3818851-3818870 None:intergenic 25.0%
!! ATCAGGTGATTAGTATTTTA+AGG + Chr2:3819932-3819951 None:intergenic 25.0%
!! CAAAAGTTGAGTTTAAAGTT+AGG - Chr2:3822683-3822702 MsG0280006593.01.T01:CDS 25.0%
!! CTAACTTTAAACTCAACTTT+TGG + Chr2:3822685-3822704 None:intergenic 25.0%
!! GAAATTTGAATTGGTTTAAG+TGG - Chr2:3817797-3817816 MsG0280006593.01.T01:intron 25.0%
!! TTCAACGCAATTTTATGATT+CGG - Chr2:3817693-3817712 MsG0280006593.01.T01:CDS 25.0%
!! TTGATTTTCTCCAGTAATAT+AGG + Chr2:3820584-3820603 None:intergenic 25.0%
!! TTTCATTGACAATTTTGAAC+TGG - Chr2:3822294-3822313 MsG0280006593.01.T01:intron 25.0%
!!! CATTAGGTTTTTGAGTAATT+GGG + Chr2:3818744-3818763 None:intergenic 25.0%
!!! TCAACATATTTTTAGGAACA+CGG - Chr2:3818958-3818977 MsG0280006593.01.T01:intron 25.0%
!!! TTTTAAGGTATACTTACAAG+TGG - Chr2:3818342-3818361 MsG0280006593.01.T01:intron 25.0%
!!! TTTTAAGGTATACTTATACG+TGG + Chr2:3819917-3819936 None:intergenic 25.0%
!!! TTTTGTTTGATACTTATGCA+TGG - Chr2:3820259-3820278 MsG0280006593.01.T01:intron 25.0%
!!! TTTTTTACTACTGTAGTTCT+TGG + Chr2:3821734-3821753 None:intergenic 25.0%
AAAAATGCGGAATAAAGAAC+CGG - Chr2:3817820-3817839 MsG0280006593.01.T01:intron 30.0%
AAAGAAAAGGATGCAAAGAA+GGG + Chr2:3817523-3817542 None:intergenic 30.0%
AACAATGGTTGTTATAGTTG+TGG + Chr2:3819622-3819641 None:intergenic 30.0%
AATATATTGTACGTACACGA+GGG - Chr2:3818536-3818555 MsG0280006593.01.T01:intron 30.0%
AATATTGATGTTAAAGGTGG+TGG + Chr2:3819405-3819424 None:intergenic 30.0%
ACAAATCAAAATTCCATAGC+TGG + Chr2:3821463-3821482 None:intergenic 30.0%
ACATTTAATAGAAGGTTGCA+TGG + Chr2:3818312-3818331 None:intergenic 30.0%
ACCAAAACCATCAAAAAGTA+AGG + Chr2:3819128-3819147 None:intergenic 30.0%
ACGATATAGTAATGTGATGA+AGG + Chr2:3823031-3823050 None:intergenic 30.0%
AGAAATGAGATCAAGACATT+TGG + Chr2:3822496-3822515 None:intergenic 30.0%
ATAAGCTTGTGAGATAATCA+TGG - Chr2:3818190-3818209 MsG0280006593.01.T01:CDS 30.0%
ATAGAATTAGTACTCTGCAT+GGG + Chr2:3822125-3822144 None:intergenic 30.0%
ATATTGACATCAAAAAGCTG+TGG - Chr2:3818857-3818876 MsG0280006593.01.T01:intron 30.0%
ATCAAGCAAATTAAAGGCAA+TGG + Chr2:3818287-3818306 None:intergenic 30.0%
ATGAAATTGGAGATGATACA+GGG + Chr2:3821620-3821639 None:intergenic 30.0%
ATGGTTATCTCTTTGAACAA+GGG - Chr2:3818570-3818589 MsG0280006593.01.T01:intron 30.0%
ATTATATGATCACAGTCATG+AGG - Chr2:3822401-3822420 MsG0280006593.01.T01:intron 30.0%
ATTCTGTCAACAATCTGTAA+TGG + Chr2:3819594-3819613 None:intergenic 30.0%
ATTGCAGAAAACCTTGTATA+TGG - Chr2:3822741-3822760 MsG0280006593.01.T01:CDS 30.0%
CATTTAATAGAAGGTTGCAT+GGG + Chr2:3818311-3818330 None:intergenic 30.0%
CCAAAACCATCAAAAAGTAA+GGG + Chr2:3819127-3819146 None:intergenic 30.0%
CCAATTACTCAAAAACCTAA+TGG - Chr2:3818742-3818761 MsG0280006593.01.T01:intron 30.0%
CCTAAATGACTAGATAATGA+AGG + Chr2:3818021-3818040 None:intergenic 30.0%
CCTTCATTATCTAGTCATTT+AGG - Chr2:3818018-3818037 MsG0280006593.01.T01:CDS 30.0%
CGATATAGTAATGTGATGAA+GGG + Chr2:3823030-3823049 None:intergenic 30.0%
CTGAAATTATTGGAATTGGA+AGG + Chr2:3821021-3821040 None:intergenic 30.0%
GAAATGAGATCAAGACATTT+GGG + Chr2:3822495-3822514 None:intergenic 30.0%
GAATGCAGTTTCATATTCTT+AGG - Chr2:3818932-3818951 MsG0280006593.01.T01:intron 30.0%
GATAATAGGGGTAAAATTGA+GGG - Chr2:3818088-3818107 MsG0280006593.01.T01:intron 30.0%
GATTGAAAGAACAAAGGTTA+AGG - Chr2:3820495-3820514 MsG0280006593.01.T01:intron 30.0%
GTTAATATTCTTAGGTAAGC+AGG + Chr2:3819031-3819050 None:intergenic 30.0%
TAAGGTTTCTTGTGGTAAAT+TGG - Chr2:3820513-3820532 MsG0280006593.01.T01:intron 30.0%
TAATATATTGTACGTACACG+AGG - Chr2:3818535-3818554 MsG0280006593.01.T01:intron 30.0%
TACTCGTAATTATCAAGTCA+TGG - Chr2:3821590-3821609 MsG0280006593.01.T01:intron 30.0%
TATAGAATTAGTACTCTGCA+TGG + Chr2:3822126-3822145 None:intergenic 30.0%
TATCTCAAAATAAGCAACAC+AGG + Chr2:3818649-3818668 None:intergenic 30.0%
TATGGTTATCTCTTTGAACA+AGG - Chr2:3818569-3818588 MsG0280006593.01.T01:intron 30.0%
TGAAACAATATGACATGACA+TGG + Chr2:3820647-3820666 None:intergenic 30.0%
TGATAATAGGGGTAAAATTG+AGG - Chr2:3818087-3818106 MsG0280006593.01.T01:intron 30.0%
TGGACTGAAATTATTGGAAT+TGG + Chr2:3821025-3821044 None:intergenic 30.0%
TTATAGGTCGAAAACTGATT+GGG - Chr2:3819173-3819192 MsG0280006593.01.T01:intron 30.0%
TTCTATTTAATGGAACCATG+TGG - Chr2:3821986-3822005 MsG0280006593.01.T01:intron 30.0%
TTGGTTTAAGTGGAAAAATG+CGG - Chr2:3817807-3817826 MsG0280006593.01.T01:intron 30.0%
TTTATAGGTCGAAAACTGAT+TGG - Chr2:3819172-3819191 MsG0280006593.01.T01:intron 30.0%
! AACTATGTGACTATCACTTT+TGG + Chr2:3820022-3820041 None:intergenic 30.0%
! ACTTTAAACTCAACTTTTGG+AGG + Chr2:3822682-3822701 None:intergenic 30.0%
! ATTGATTCCTAAAGACTGAT+GGG - Chr2:3818468-3818487 MsG0280006593.01.T01:intron 30.0%
! ATTTGAGGCAAGTGATAATA+GGG - Chr2:3818075-3818094 MsG0280006593.01.T01:intron 30.0%
! CGTGCTTATTGTTATTCTTT+GGG - Chr2:3820425-3820444 MsG0280006593.01.T01:intron 30.0%
! CTATTGCCATTTACCAAATA+GGG + Chr2:3819441-3819460 None:intergenic 30.0%
! CTTTAAACTCAACTTTTGGA+GGG + Chr2:3822681-3822700 None:intergenic 30.0%
! GGATTTGGTCAAAATAGAAT+AGG - Chr2:3818363-3818382 MsG0280006593.01.T01:CDS 30.0%
! GGTTTTCTGCAATAACATAA+TGG + Chr2:3822734-3822753 None:intergenic 30.0%
! TATTTGAGGCAAGTGATAAT+AGG - Chr2:3818074-3818093 MsG0280006593.01.T01:intron 30.0%
! TGCAAACGTTGATGTTTTAT+AGG - Chr2:3819157-3819176 MsG0280006593.01.T01:intron 30.0%
! TTATATTACCCCTTTTCAAC+CGG - Chr2:3818429-3818448 MsG0280006593.01.T01:intron 30.0%
! TTGAATAGATTTTCCAGCTA+TGG - Chr2:3821447-3821466 MsG0280006593.01.T01:intron 30.0%
! TTTTATAGTGCTTCACACTA+GGG + Chr2:3817374-3817393 None:intergenic 30.0%
! TTTTCTACTTCTCTCAACAT+TGG + Chr2:3821123-3821142 None:intergenic 30.0%
!! AAAAATACTTTGACTTGAGC+AGG - Chr2:3818785-3818804 MsG0280006593.01.T01:intron 30.0%
!! ATTAGTGGGTACATTCATTT+TGG + Chr2:3821279-3821298 None:intergenic 30.0%
!! CTCAAGTCAAAGTATTTTTG+TGG + Chr2:3818784-3818803 None:intergenic 30.0%
!! TATTCTCTAGGAGCATATTT+TGG - Chr2:3821061-3821080 MsG0280006593.01.T01:intron 30.0%
!! TATTGATTCCTAAAGACTGA+TGG - Chr2:3818467-3818486 MsG0280006593.01.T01:intron 30.0%
!!! CCATTAGGTTTTTGAGTAAT+TGG + Chr2:3818745-3818764 None:intergenic 30.0%
!!! TCCCTTTCAAGTTTTAATAG+TGG - Chr2:3821663-3821682 MsG0280006593.01.T01:intron 30.0%
!!! TCTTTGGGATTTTTTCACTA+GGG - Chr2:3820440-3820459 MsG0280006593.01.T01:intron 30.0%
!!! TTCTTTGGGATTTTTTCACT+AGG - Chr2:3820439-3820458 MsG0280006593.01.T01:intron 30.0%
AAAAACACCCATCAGTCTTT+AGG + Chr2:3818478-3818497 None:intergenic 35.0%
AAACAGCAACATGAAAGAGA+TGG + Chr2:3822798-3822817 None:intergenic 35.0%
AAATCATCATGATTTCACGC+CGG - Chr2:3822957-3822976 MsG0280006593.01.T01:intron 35.0%
AACAGCAACATGAAAGAGAT+GGG + Chr2:3822797-3822816 None:intergenic 35.0%
AACCTTCGATGGATATATTC+TGG - Chr2:3820968-3820987 MsG0280006593.01.T01:intron 35.0%
AAGTGCTTTGCATCAGAAAT+CGG - Chr2:3821790-3821809 MsG0280006593.01.T01:intron 35.0%
ACAAAGGTTAAGGTTTCTTG+TGG - Chr2:3820505-3820524 MsG0280006593.01.T01:intron 35.0%
ACGACTTAGGGTTTAGTATT+TGG + Chr2:3818260-3818279 None:intergenic 35.0%
AGCTAGATGAACAGCAAATT+GGG + Chr2:3822352-3822371 None:intergenic 35.0%
ATCACATTACTATATCGTCC+TGG - Chr2:3823033-3823052 MsG0280006593.01.T01:intron 35.0%
ATGCAAAAAGCTAAACGCAA+TGG + Chr2:3817405-3817424 None:intergenic 35.0%
ATGGGCATCAAGCAAATTAA+AGG + Chr2:3818293-3818312 None:intergenic 35.0%
CAAAGAGTTCATACGATGTA+GGG + Chr2:3817989-3818008 None:intergenic 35.0%
CAAATAGTTCCCATAGTTCA+AGG + Chr2:3821430-3821449 None:intergenic 35.0%
CATGAAATTGGAGATGATAC+AGG + Chr2:3821621-3821640 None:intergenic 35.0%
CCTATTTGGTAAATGGCAAT+AGG - Chr2:3819439-3819458 MsG0280006593.01.T01:CDS 35.0%
CCTTAATGACTAGATAAGCA+AGG + Chr2:3820320-3820339 None:intergenic 35.0%
CCTTGCTTATCTAGTCATTA+AGG - Chr2:3820317-3820336 MsG0280006593.01.T01:intron 35.0%
CTATTACCATTTACCAAGCA+TGG - Chr2:3818821-3818840 MsG0280006593.01.T01:intron 35.0%
CTCAAAAACCTAATGGCAAT+TGG - Chr2:3818749-3818768 MsG0280006593.01.T01:intron 35.0%
CTCCATATCGTAACATTAAC+AGG + Chr2:3821764-3821783 None:intergenic 35.0%
GAAAGAAAAGGATGCAAAGA+AGG + Chr2:3817524-3817543 None:intergenic 35.0%
GATCAGTCAGTTTCAGATTA+TGG - Chr2:3822444-3822463 MsG0280006593.01.T01:intron 35.0%
GATGATCCCTATTTGGTAAA+TGG - Chr2:3819432-3819451 MsG0280006593.01.T01:intron 35.0%
GGGTTGCAGTTAATATTCTT+AGG + Chr2:3819039-3819058 None:intergenic 35.0%
GGTATACTTATACGTGGATT+TGG + Chr2:3819911-3819930 None:intergenic 35.0%
GTATACATAGTAATCTCTGC+AGG - Chr2:3821339-3821358 MsG0280006593.01.T01:intron 35.0%
TAGAATTAGTACTCTGCATG+GGG + Chr2:3822124-3822143 None:intergenic 35.0%
TATCTCTTTGAACAAGGGTA+TGG - Chr2:3818575-3818594 MsG0280006593.01.T01:intron 35.0%
TCTATCAAGCCTTGAACTAT+GGG - Chr2:3821418-3821437 MsG0280006593.01.T01:intron 35.0%
TCTGTTATTCCCTTTAATGC+AGG - Chr2:3820695-3820714 MsG0280006593.01.T01:intron 35.0%
TCTTCGTTTCTTGTGTTTCT+GGG - Chr2:3821212-3821231 MsG0280006593.01.T01:intron 35.0%
TTCTCTACTTTAACCTTCGA+TGG - Chr2:3820957-3820976 MsG0280006593.01.T01:intron 35.0%
TTCTTCGTTTCTTGTGTTTC+TGG - Chr2:3821211-3821230 MsG0280006593.01.T01:intron 35.0%
TTGGTTAAGCCCATAATGAA+AGG + Chr2:3822612-3822631 None:intergenic 35.0%
TTTGCGCATTGAGAAAGAAA+AGG + Chr2:3817536-3817555 None:intergenic 35.0%
TTTGTGATCTGCATGAAAAG+AGG - Chr2:3819834-3819853 MsG0280006593.01.T01:CDS 35.0%
! AAGTCTAAGTGTTTTTCTGG+AGG - Chr2:3819481-3819500 MsG0280006593.01.T01:CDS 35.0%
! ATGCCAGAAAATTTTCCACA+TGG + Chr2:3822004-3822023 None:intergenic 35.0%
! ATGGTGATCTCTTTGAGAAA+GGG + Chr2:3819674-3819693 None:intergenic 35.0%
! ATTTTGCAAGCCTTGAACTA+TGG - Chr2:3821488-3821507 MsG0280006593.01.T01:intron 35.0%
! CAAAGGGTCTAAAACTGATT+GGG + Chr2:3819292-3819311 None:intergenic 35.0%
! CCTATTGCCATTTACCAAAT+AGG + Chr2:3819442-3819461 None:intergenic 35.0%
! CTCAAGTCTAAGTGTTTTTC+TGG - Chr2:3819478-3819497 MsG0280006593.01.T01:CDS 35.0%
! CTGGAAGCATGATATATTCT+CGG - Chr2:3822313-3822332 MsG0280006593.01.T01:intron 35.0%
! GAACCATGTGGAAAATTTTC+TGG - Chr2:3821998-3822017 MsG0280006593.01.T01:intron 35.0%
! GCGTGCTTATTGTTATTCTT+TGG - Chr2:3820424-3820443 MsG0280006593.01.T01:intron 35.0%
! GGTATACTTACAAGTGGATT+TGG - Chr2:3818348-3818367 MsG0280006593.01.T01:intron 35.0%
! GTTTTATAGTGCTTCACACT+AGG + Chr2:3817375-3817394 None:intergenic 35.0%
! TATCTCTTCTAACTTTTCCC+AGG - Chr2:3821873-3821892 MsG0280006593.01.T01:intron 35.0%
! TATGGTGATCTCTTTGAGAA+AGG + Chr2:3819675-3819694 None:intergenic 35.0%
! TCAAAGGGTCTAAAACTGAT+TGG + Chr2:3819293-3819312 None:intergenic 35.0%
! TCTCTTTGAGAAAGGGTATA+TGG + Chr2:3819667-3819686 None:intergenic 35.0%
! TTTCAACTAGCCTAACCTAA+AGG + Chr2:3821365-3821384 None:intergenic 35.0%
! TTTGAGGCAAGTGATAATAG+GGG - Chr2:3818076-3818095 MsG0280006593.01.T01:intron 35.0%
!! GTGCTAACATGTTTAACTTG+AGG - Chr2:3820362-3820381 MsG0280006593.01.T01:intron 35.0%
!! TTGTGGGTATTTTCAAGATC+AGG + Chr2:3819949-3819968 None:intergenic 35.0%
!!! ACACTAGTTTTTTGCAGTCA+CGG - Chr2:3819543-3819562 MsG0280006593.01.T01:intron 35.0%
!!! AGGAAACCCTTACTTTTTGA+TGG - Chr2:3819118-3819137 MsG0280006593.01.T01:intron 35.0%
!!! AGTGGATTATCATTTTGGTG+CGG - Chr2:3821681-3821700 MsG0280006593.01.T01:intron 35.0%
!!! CCCTTACTTTTTGATGGTTT+TGG - Chr2:3819124-3819143 MsG0280006593.01.T01:intron 35.0%
!!! CTTTGGGATTTTTTCACTAG+GGG - Chr2:3820441-3820460 MsG0280006593.01.T01:intron 35.0%
!!! TAGGTTTTTGAGTAATTGGG+AGG + Chr2:3818741-3818760 None:intergenic 35.0%
!!! TTTGGGATTTTTTCACTAGG+GGG - Chr2:3820442-3820461 MsG0280006593.01.T01:intron 35.0%
AAACCTAATGGCAATTGGTG+TGG - Chr2:3818754-3818773 MsG0280006593.01.T01:intron 40.0%
AAATCAGCTGTTGAGCCAAT+GGG - Chr2:3822826-3822845 MsG0280006593.01.T01:five_prime_UTR 40.0%
AACCAATACAACAGTTGAGC+AGG - Chr2:3822626-3822645 MsG0280006593.01.T01:intron 40.0%
AACCTGCTCAACTGTTGTAT+TGG + Chr2:3822631-3822650 None:intergenic 40.0%
AATGCCCAATGCATCTGAAA+GGG + Chr2:3822881-3822900 None:intergenic 40.0%
ACAGCAACATGAAAGAGATG+GGG + Chr2:3822796-3822815 None:intergenic 40.0%
ACCAAAACCATCAACAAGCA+AGG - Chr2:3819354-3819373 MsG0280006593.01.T01:intron 40.0%
ACCACAGCTCTATTCAACAA+TGG + Chr2:3819637-3819656 None:intergenic 40.0%
ACCATTGTTGAATAGAGCTG+TGG - Chr2:3819633-3819652 MsG0280006593.01.T01:intron 40.0%
ACCCACAAACGGAAATTTCT+TGG + Chr2:3817954-3817973 None:intergenic 40.0%
ACTGAGCTTGGTTGTTAATG+AGG - Chr2:3823132-3823151 MsG0280006593.01.T01:five_prime_UTR 40.0%
AGATCAAGACATTTGGGCAT+TGG + Chr2:3822489-3822508 None:intergenic 40.0%
AGCCAAGAAATTTCCGTTTG+TGG - Chr2:3817949-3817968 MsG0280006593.01.T01:intron 40.0%
AGCCAGAATATATCCATCGA+AGG + Chr2:3820973-3820992 None:intergenic 40.0%
AGCTGGAAGACGTTATTCAA+GGG - Chr2:3822227-3822246 MsG0280006593.01.T01:intron 40.0%
AGGAGTCAGTTATCACCTTA+TGG + Chr2:3822263-3822282 None:intergenic 40.0%
AGGCAATGGTTTAACGACTT+AGG + Chr2:3818273-3818292 None:intergenic 40.0%
AGGTTTCAAAGAGTGATGCA+AGG + Chr2:3820293-3820312 None:intergenic 40.0%
AGTCAATTCTGCATAACCCA+AGG + Chr2:3821156-3821175 None:intergenic 40.0%
ATCAGGCAGTCCTATATTAC+TGG - Chr2:3820571-3820590 MsG0280006593.01.T01:intron 40.0%
ATCATCCTCACTTTGGATAG+AGG + Chr2:3823071-3823090 None:intergenic 40.0%
ATGACATGACATGGCACAAA+AGG + Chr2:3820638-3820657 None:intergenic 40.0%
ATTAACAACCAAGCTCAGTG+TGG + Chr2:3823131-3823150 None:intergenic 40.0%
ATTAGGATGGTCAGCAACTA+AGG + Chr2:3820157-3820176 None:intergenic 40.0%
ATTTCCGTTTGTGGGTGATA+AGG - Chr2:3817958-3817977 MsG0280006593.01.T01:intron 40.0%
CAATCTGTAATGGTGCAAGA+AGG + Chr2:3819584-3819603 None:intergenic 40.0%
CAGACCAGAGCTATGTTATA+GGG - Chr2:3821813-3821832 MsG0280006593.01.T01:intron 40.0%
CATCAAGCACCTGCATTAAA+GGG + Chr2:3820707-3820726 None:intergenic 40.0%
CCAAAACCATCAACAAGCAA+GGG - Chr2:3819355-3819374 MsG0280006593.01.T01:intron 40.0%
CCAAAGTGAGGATGATCTAT+TGG - Chr2:3823075-3823094 MsG0280006593.01.T01:intron 40.0%
CCAATAGATCATCCTCACTT+TGG + Chr2:3823078-3823097 None:intergenic 40.0%
CCACCCAGTTTGTAGTAATT+GGG - Chr2:3819517-3819536 MsG0280006593.01.T01:CDS 40.0%
CCTCCCAATTACTACAAACT+GGG + Chr2:3819523-3819542 None:intergenic 40.0%
CTGAGCTTGGTTGTTAATGA+GGG - Chr2:3823133-3823152 MsG0280006593.01.T01:five_prime_UTR 40.0%
CTTACCTTATCACCCACAAA+CGG + Chr2:3817965-3817984 None:intergenic 40.0%
CTTTAATGCAGGTGCTTGAT+GGG - Chr2:3820706-3820725 MsG0280006593.01.T01:intron 40.0%
GACACATAATAGGGGACATT+TGG + Chr2:3819262-3819281 None:intergenic 40.0%
GACTAGATAAGCAAGGAAAC+AGG + Chr2:3820313-3820332 None:intergenic 40.0%
GAGCTAGATGAACAGCAAAT+TGG + Chr2:3822353-3822372 None:intergenic 40.0%
GATATCCTCTATCCAAAGTG+AGG - Chr2:3823063-3823082 MsG0280006593.01.T01:intron 40.0%
GATCAAGACATTTGGGCATT+GGG + Chr2:3822488-3822507 None:intergenic 40.0%
GATTTGGATTCTTGGCAGTA+AGG + Chr2:3819975-3819994 None:intergenic 40.0%
GCAAAGAGTTCATACGATGT+AGG + Chr2:3817990-3818009 None:intergenic 40.0%
GCAGGATATTCTTAAGAACG+CGG + Chr2:3819013-3819032 None:intergenic 40.0%
GCCAAGAAATTTCCGTTTGT+GGG - Chr2:3817950-3817969 MsG0280006593.01.T01:intron 40.0%
GCTCCAATGACACATAATAG+GGG + Chr2:3819270-3819289 None:intergenic 40.0%
GGCAATGGTTTAACGACTTA+GGG + Chr2:3818272-3818291 None:intergenic 40.0%
GGCCTGTTAATGTTACGATA+TGG - Chr2:3821759-3821778 MsG0280006593.01.T01:intron 40.0%
GGCTCCAATGACACATAATA+GGG + Chr2:3819271-3819290 None:intergenic 40.0%
GGTGAACAATGTTGTCAATG+CGG + Chr2:3819337-3819356 None:intergenic 40.0%
GTATGTATTGTATGCGCAGA+AGG + Chr2:3819708-3819727 None:intergenic 40.0%
GTCTATCAAGCCTTGAACTA+TGG - Chr2:3821417-3821436 MsG0280006593.01.T01:intron 40.0%
GTGAACAATGTTGTCAATGC+GGG + Chr2:3819336-3819355 None:intergenic 40.0%
GTTTCTTGTGGTAAATTGGC+AGG - Chr2:3820517-3820536 MsG0280006593.01.T01:intron 40.0%
TACACCCTATAACATAGCTC+TGG + Chr2:3821820-3821839 None:intergenic 40.0%
TACGGTCAAGATACACAACA+CGG + Chr2:3822909-3822928 None:intergenic 40.0%
TAGAGGATATCATAGTGACC+AGG + Chr2:3823054-3823073 None:intergenic 40.0%
TCAAGATACACAACACGGAT+TGG + Chr2:3822904-3822923 None:intergenic 40.0%
TCCTCCCAATTACTACAAAC+TGG + Chr2:3819524-3819543 None:intergenic 40.0%
TGAATAGAGCTGTGGTTTCA+AGG - Chr2:3819641-3819660 MsG0280006593.01.T01:intron 40.0%
TGACACACTTGATCTCCATT+GGG + Chr2:3818708-3818727 None:intergenic 40.0%
TGTCCCCTATTATGTGTCAT+TGG - Chr2:3819264-3819283 MsG0280006593.01.T01:intron 40.0%
TTGACACACTTGATCTCCAT+TGG + Chr2:3818709-3818728 None:intergenic 40.0%
TTGGCTGCTGAATATCAATC+AGG - Chr2:3820554-3820573 MsG0280006593.01.T01:intron 40.0%
TTTCAAAGAGTGATGCAAGG+TGG + Chr2:3820290-3820309 None:intergenic 40.0%
! AGAAAACCCTTGCTTGTTGA+TGG + Chr2:3819364-3819383 None:intergenic 40.0%
! TCGATGGATATATTCTGGCT+TGG - Chr2:3820973-3820992 MsG0280006593.01.T01:intron 40.0%
!! AGAAAAGCACTTCAGACCTT+GGG - Chr2:3821137-3821156 MsG0280006593.01.T01:intron 40.0%
!! ATATATTCTGGCTTGGGTCT+AGG - Chr2:3820980-3820999 MsG0280006593.01.T01:intron 40.0%
!! ATGTTAAAGGTGGTGGAGTT+AGG + Chr2:3819398-3819417 None:intergenic 40.0%
!! CATTTCTAGTCAGTTCTCCT+GGG + Chr2:3821893-3821912 None:intergenic 40.0%
!! CGATGGATATATTCTGGCTT+GGG - Chr2:3820974-3820993 MsG0280006593.01.T01:intron 40.0%
!! GCTCTAGAGACACATAATTG+GGG - Chr2:3819195-3819214 MsG0280006593.01.T01:intron 40.0%
!! GGCTCTAGAGACACATAATT+GGG - Chr2:3819194-3819213 MsG0280006593.01.T01:intron 40.0%
!! TAGAAAAGCACTTCAGACCT+TGG - Chr2:3821136-3821155 MsG0280006593.01.T01:intron 40.0%
!! TATATTCTGGCTTGGGTCTA+GGG - Chr2:3820981-3821000 MsG0280006593.01.T01:intron 40.0%
!! TGGGGACAATTTTGACATAC+TGG - Chr2:3819213-3819232 MsG0280006593.01.T01:intron 40.0%
!!! AAAGAACCGGTTTTGGATGA+TGG - Chr2:3817833-3817852 MsG0280006593.01.T01:intron 40.0%
!!! AAGAACCGGTTTTGGATGAT+GGG - Chr2:3817834-3817853 MsG0280006593.01.T01:intron 40.0%
AAAGGGCGGTAATGTGAACA+TGG + Chr2:3822864-3822883 None:intergenic 45.0%
AAATTACCCCACGCAGATTC+TGG + Chr2:3817881-3817900 None:intergenic 45.0%
AAGGGAAAGAGACGTCCATA+AGG - Chr2:3822245-3822264 MsG0280006593.01.T01:intron 45.0%
ACTTCCCCATCATCCAAAAC+CGG + Chr2:3817842-3817861 None:intergenic 45.0%
AGTAATCTCTGCAGGCCTTT+AGG - Chr2:3821347-3821366 MsG0280006593.01.T01:intron 45.0%
ATGGGCAATATGCTGCCATT+CGG - Chr2:3820724-3820743 MsG0280006593.01.T01:intron 45.0%
ATGGTCAGCAACTAAGGAAG+TGG + Chr2:3820151-3820170 None:intergenic 45.0%
CAAATCAGCTGTTGAGCCAA+TGG - Chr2:3822825-3822844 MsG0280006593.01.T01:five_prime_UTR 45.0%
CACCAGTATCACATGAGCTA+CGG + Chr2:3822927-3822946 None:intergenic 45.0%
CAGAGTTGTGCTTAGTGTTG+TGG + Chr2:3818609-3818628 None:intergenic 45.0%
CAGCTGGAAGACGTTATTCA+AGG - Chr2:3822226-3822245 MsG0280006593.01.T01:intron 45.0%
CATCAAAAAGCTGTGGTGCT+AGG - Chr2:3818864-3818883 MsG0280006593.01.T01:intron 45.0%
CCAGGAGAACTGACTAGAAA+TGG - Chr2:3821891-3821910 MsG0280006593.01.T01:intron 45.0%
CCATCAAGCACCTGCATTAA+AGG + Chr2:3820708-3820727 None:intergenic 45.0%
CCCAATTACTACAAACTGGG+TGG + Chr2:3819520-3819539 None:intergenic 45.0%
CCCAGTTTGTAGTAATTGGG+AGG - Chr2:3819520-3819539 MsG0280006593.01.T01:CDS 45.0%
CCTTTAATGCAGGTGCTTGA+TGG - Chr2:3820705-3820724 MsG0280006593.01.T01:intron 45.0%
CGTTTGTGGGTGATAAGGTA+AGG - Chr2:3817963-3817982 MsG0280006593.01.T01:intron 45.0%
GAACCACACCAATTGCCATT+AGG + Chr2:3818760-3818779 None:intergenic 45.0%
GAACTGGGATGATCCCTATT+TGG - Chr2:3819425-3819444 MsG0280006593.01.T01:intron 45.0%
GAATGCCCAATGCATCTGAA+AGG + Chr2:3822882-3822901 None:intergenic 45.0%
GACACACTTGATCTCCATTG+GGG + Chr2:3818707-3818726 None:intergenic 45.0%
GATGGAAACTGCTTCTTTCG+AGG - Chr2:3820759-3820778 MsG0280006593.01.T01:intron 45.0%
GCACAACTCTGTTTCGACAT+TGG - Chr2:3818618-3818637 MsG0280006593.01.T01:intron 45.0%
GCAGACCAGAGCTATGTTAT+AGG - Chr2:3821812-3821831 MsG0280006593.01.T01:intron 45.0%
GCAGCAGCAATCTTCTATTC+AGG - Chr2:3817919-3817938 MsG0280006593.01.T01:intron 45.0%
GCCACCCAGTTTGTAGTAAT+TGG - Chr2:3819516-3819535 MsG0280006593.01.T01:CDS 45.0%
GGAACACGGCTACATTTGTT+TGG - Chr2:3818972-3818991 MsG0280006593.01.T01:intron 45.0%
GGATGACCATGCTTGGTAAA+TGG + Chr2:3818830-3818849 None:intergenic 45.0%
GGGCTCCAATGACACATAAT+AGG + Chr2:3819272-3819291 None:intergenic 45.0%
GTGTGTGATCCGGTTGAAAA+GGG + Chr2:3818441-3818460 None:intergenic 45.0%
TAAGTGTCAACGATCCCCAA+TGG - Chr2:3818690-3818709 MsG0280006593.01.T01:intron 45.0%
TCAGTTATTCCTTGAGCAGC+TGG - Chr2:3822210-3822229 MsG0280006593.01.T01:intron 45.0%
TGAACTAGGATGACCATGCT+TGG + Chr2:3818837-3818856 None:intergenic 45.0%
TGATGGGGAAGTAGAGTATG+AGG - Chr2:3817850-3817869 MsG0280006593.01.T01:intron 45.0%
TGTGTGATCCGGTTGAAAAG+GGG + Chr2:3818440-3818459 None:intergenic 45.0%
TGTGTGTGATCCGGTTGAAA+AGG + Chr2:3818442-3818461 None:intergenic 45.0%
TTGCTCTTCACTCTCTCACA+CGG - Chr2:3817467-3817486 MsG0280006593.01.T01:three_prime_UTR 45.0%
! ATCTGCGTGGGGTAATTTTG+AGG - Chr2:3817883-3817902 MsG0280006593.01.T01:intron 45.0%
! TAGCTTGCGATTTCGATCGA+AGG - Chr2:3817490-3817509 MsG0280006593.01.T01:three_prime_UTR 45.0%
!! CACGAGGGTGTTTGTTGTTA+TGG - Chr2:3818551-3818570 MsG0280006593.01.T01:intron 45.0%
!! CCATTTCTAGTCAGTTCTCC+TGG + Chr2:3821894-3821913 None:intergenic 45.0%
!! GCAGAAGGTGTTTGTGGTTA+TGG + Chr2:3819693-3819712 None:intergenic 45.0%
!! GCGGAATAAAGAACCGGTTT+TGG - Chr2:3817826-3817845 MsG0280006593.01.T01:intron 45.0%
!! GGGCTCTAGAGACACATAAT+TGG - Chr2:3819193-3819212 MsG0280006593.01.T01:intron 45.0%
!! GTGGGTACATTCATTTTGGC+TGG + Chr2:3821275-3821294 None:intergenic 45.0%
!!! AGAACCGGTTTTGGATGATG+GGG - Chr2:3817835-3817854 MsG0280006593.01.T01:intron 45.0%
!!! CCCTTGCTTGTTGATGGTTT+TGG + Chr2:3819358-3819377 None:intergenic 45.0%
!!! GGATTTTTTCACTAGGGGGA+TGG - Chr2:3820446-3820465 MsG0280006593.01.T01:intron 45.0%
ACCGCCCTTTCAGATGCATT+GGG - Chr2:3822874-3822893 MsG0280006593.01.T01:intron 50.0%
ATTCAGCTCCACACTGAGCT+TGG - Chr2:3823120-3823139 MsG0280006593.01.T01:five_prime_UTR 50.0%
CAGAGCTACCACTAGCACTT+GGG + Chr2:3822996-3823015 None:intergenic 50.0%
CGTAGCTCATGTGATACTGG+TGG - Chr2:3822925-3822944 MsG0280006593.01.T01:intron 50.0%
CTTGGCAGTAAGGCTGTTGT+GGG + Chr2:3819965-3819984 None:intergenic 50.0%
GACCGTAGCTCATGTGATAC+TGG - Chr2:3822922-3822941 MsG0280006593.01.T01:intron 50.0%
GCAGGAACCACTATCTAGCT+TGG - Chr2:3820535-3820554 MsG0280006593.01.T01:intron 50.0%
TAACGTCTTCCAGCTGCTCA+AGG + Chr2:3822222-3822241 None:intergenic 50.0%
TACCGCCCTTTCAGATGCAT+TGG - Chr2:3822873-3822892 MsG0280006593.01.T01:intron 50.0%
TCAGAGCTACCACTAGCACT+TGG + Chr2:3822997-3823016 None:intergenic 50.0%
TCAGCAGCCAAGCTAGATAG+TGG + Chr2:3820545-3820564 None:intergenic 50.0%
TCTTGGCAGTAAGGCTGTTG+TGG + Chr2:3819966-3819985 None:intergenic 50.0%
TGCTTAGTGTTGTGGTCACG+AGG + Chr2:3818601-3818620 None:intergenic 50.0%
! TCTCTGCAGGCCTTTAGGTT+AGG - Chr2:3821352-3821371 MsG0280006593.01.T01:intron 50.0%
! TTTTCACTAGGGGGATGGAG+AGG - Chr2:3820451-3820470 MsG0280006593.01.T01:intron 50.0%
!! AGACATTTGGGCATTGGGAC+AGG + Chr2:3822483-3822502 None:intergenic 50.0%
!! GTATGCGCAGAAGGTGTTTG+TGG + Chr2:3819699-3819718 None:intergenic 50.0%
ATCTCCACGAGTACGCCGAA+TGG + Chr2:3820742-3820761 None:intergenic 55.0%
ATTCGGCGTACTCGTGGAGA+TGG - Chr2:3820741-3820760 MsG0280006593.01.T01:intron 55.0%
CTTGGGAGATCACCAGCAAC+CGG + Chr2:3822979-3822998 None:intergenic 55.0%
GCCCAATGCATCTGAAAGGG+CGG + Chr2:3822878-3822897 None:intergenic 55.0%
GGGGAAGTAGAGTATGAGGC+TGG - Chr2:3817854-3817873 MsG0280006593.01.T01:intron 55.0%
GGTGATCTCCCAAGTGCTAG+TGG - Chr2:3822985-3823004 MsG0280006593.01.T01:intron 55.0%
TGGTCGCTCTCTTCTCCCAT+TGG + Chr2:3822844-3822863 None:intergenic 55.0%
! CATGATTTCACGCCGGTTGC+TGG - Chr2:3822964-3822983 MsG0280006593.01.T01:intron 55.0%
! TGGCTTGGGTCTAGGGAGTA+TGG - Chr2:3820988-3821007 MsG0280006593.01.T01:intron 55.0%
GCTGGTCCAGAATCTGCGTG+GGG - Chr2:3817872-3817891 MsG0280006593.01.T01:intron 60.0%
! AGGCTGGTCCAGAATCTGCG+TGG - Chr2:3817870-3817889 MsG0280006593.01.T01:intron 60.0%
! GGCTGGTCCAGAATCTGCGT+GGG - Chr2:3817871-3817890 MsG0280006593.01.T01:intron 60.0%
GCTGCCATTCGGCGTACTCG+TGG - Chr2:3820735-3820754 MsG0280006593.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 3817328 3823298 3817328 ID=MsG0280006593.01;Name=MsG0280006593.01
Chr2 mRNA 3817328 3823298 3817328 ID=MsG0280006593.01.T01;Parent=MsG0280006593.01;Name=MsG0280006593.01.T01;_AED=0.39;_eAED=0.39;_QI=257|0.87|0.88|1|0.87|0.77|9|215|294
Chr2 exon 3817328 3817806 3817328 ID=MsG0280006593.01.T01:exon:1804;Parent=MsG0280006593.01.T01
Chr2 exon 3817979 3818063 3817979 ID=MsG0280006593.01.T01:exon:1803;Parent=MsG0280006593.01.T01
Chr2 exon 3818157 3818210 3818157 ID=MsG0280006593.01.T01:exon:1802;Parent=MsG0280006593.01.T01
Chr2 exon 3818360 3818412 3818360 ID=MsG0280006593.01.T01:exon:1801;Parent=MsG0280006593.01.T01
Chr2 exon 3819433 3819555 3819433 ID=MsG0280006593.01.T01:exon:1800;Parent=MsG0280006593.01.T01
Chr2 exon 3819826 3819909 3819826 ID=MsG0280006593.01.T01:exon:1799;Parent=MsG0280006593.01.T01
Chr2 exon 3820022 3820087 3820022 ID=MsG0280006593.01.T01:exon:1798;Parent=MsG0280006593.01.T01
Chr2 exon 3822647 3822875 3822647 ID=MsG0280006593.01.T01:exon:1797;Parent=MsG0280006593.01.T01
Chr2 exon 3823115 3823298 3823115 ID=MsG0280006593.01.T01:exon:1796;Parent=MsG0280006593.01.T01
Chr2 five_prime_UTR 3823115 3823298 3823115 ID=MsG0280006593.01.T01:five_prime_utr;Parent=MsG0280006593.01.T01
Chr2 five_prime_UTR 3822803 3822875 3822803 ID=MsG0280006593.01.T01:five_prime_utr;Parent=MsG0280006593.01.T01
Chr2 CDS 3822647 3822802 3822647 ID=MsG0280006593.01.T01:cds;Parent=MsG0280006593.01.T01
Chr2 CDS 3820022 3820087 3820022 ID=MsG0280006593.01.T01:cds;Parent=MsG0280006593.01.T01
Chr2 CDS 3819826 3819909 3819826 ID=MsG0280006593.01.T01:cds;Parent=MsG0280006593.01.T01
Chr2 CDS 3819433 3819555 3819433 ID=MsG0280006593.01.T01:cds;Parent=MsG0280006593.01.T01
Chr2 CDS 3818360 3818412 3818360 ID=MsG0280006593.01.T01:cds;Parent=MsG0280006593.01.T01
Chr2 CDS 3818157 3818210 3818157 ID=MsG0280006593.01.T01:cds;Parent=MsG0280006593.01.T01
Chr2 CDS 3817979 3818063 3817979 ID=MsG0280006593.01.T01:cds;Parent=MsG0280006593.01.T01
Chr2 CDS 3817543 3817806 3817543 ID=MsG0280006593.01.T01:cds;Parent=MsG0280006593.01.T01
Chr2 three_prime_UTR 3817328 3817542 3817328 ID=MsG0280006593.01.T01:three_prime_utr;Parent=MsG0280006593.01.T01
Gene Sequence

>MsG0280006593.01.T01

ATGCGGAATAAAGAACCGGTTTTGGATGATGGGGAAGTAGAGTATGAGGCTGGTCCAGAATCTGCGTGGGGTAATTTTGAGGATGATGATGTAATGCAGCAGCAATCTTCTATTCAGGATGATGAAGCCAAGAAATTTCCGTTTGTGGGTGATAAGGAACCACTATCTAGCTTGGCTGCTGAATATCAATCAGGCAGTCCTATATTACTGGAGAAAATCAAGGTGCTTGATGGGCAATATGCTGCCATTCGGCGTACTCGTGGAGATGGAAACTGCTTCTTTCGAGGCTTTATGTTTTCATACCTTGAGCATATTTTGGAAGCTCAAGACAGTGCAGAAATTGATCGCATCAAAGCCAATGTTGAGAGAAGTAGAAAAGCACTTCAGACCTTGGGTTATGCAGAATTGACTTTTGAAGATTTTTTTACGTTATTCCTTGAGCAGCTGGAAGACGTTATTCAAGGGAAAGAGACGTCCATAAGTCATGAGGAGCTTGTTATTAGAAGTCGAGATCAGTCAGTTTCAGATTATGGTGAATTTGTTACATCTGCTGAAATACAGAAGCGCTCAGAATTTTTTGAACCTTTCATTATGGGCTTAACCAATACAACAGTTGAGCAGTTCTGCAAATCAGCTGTTGAGCCAATGGGAGAAGAGAGCGACCATGTTCACATTACCGCCCTTTCAGATGCATTGGGCATTCCAATCCGTGTTGTGTATCTTGACCGTAGCTCATGTGATACTGGTGGTGTCAGTGTAAATCATCATGATTTCACGCCGGTTGCTGGTGATCTCCCAAGTGCTAGTGGTAGCTCTGAAAAGAAGAATCCCTTCATCACATTACTATATCGTCCTGGTCACTATGATATCCTCTATCCAAAGTGA

Protein sequence

>MsG0280006593.01.T01

MRNKEPVLDDGEVEYEAGPESAWGNFEDDDVMQQQSSIQDDEAKKFPFVGDKEPLSSLAAEYQSGSPILLEKIKVLDGQYAAIRRTRGDGNCFFRGFMFSYLEHILEAQDSAEIDRIKANVERSRKALQTLGYAELTFEDFFTLFLEQLEDVIQGKETSISHEELVIRSRDQSVSDYGEFVTSAEIQKRSEFFEPFIMGLTNTTVEQFCKSAVEPMGEESDHVHITALSDALGIPIRVVYLDRSSCDTGGVSVNHHDFTPVAGDLPSASGSSEKKNPFITLLYRPGHYDILYPK*